Citrus Sinensis ID: 000777
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1288 | 2.2.26 [Sep-21-2011] | |||||||
| O80725 | 1286 | ABC transporter B family | yes | no | 0.961 | 0.963 | 0.755 | 0.0 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.955 | 0.963 | 0.747 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.958 | 0.952 | 0.750 | 0.0 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.968 | 0.980 | 0.724 | 0.0 | |
| Q9SYI3 | 1230 | ABC transporter B family | no | no | 0.952 | 0.997 | 0.698 | 0.0 | |
| Q9SYI2 | 1229 | ABC transporter B family | no | no | 0.948 | 0.994 | 0.702 | 0.0 | |
| Q9M0M2 | 1236 | ABC transporter B family | no | no | 0.952 | 0.992 | 0.645 | 0.0 | |
| Q9FHF1 | 1248 | ABC transporter B family | no | no | 0.954 | 0.985 | 0.605 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.953 | 0.980 | 0.453 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.962 | 0.964 | 0.454 | 0.0 |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1898 bits (4917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 943/1248 (75%), Positives = 1099/1248 (88%), Gaps = 9/1248 (0%)
Query: 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV 102
+VPFYKLF FADS D LMI+G++G+IGNGL PLMTLLFGDLI+ FG+NQ N T DKV
Sbjct: 45 TVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQTN--TTDKV 102
Query: 103 SKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGE 162
SKVA+KFV+LGIG+ A+FLQ++ WMI+GERQA RIR LYLKTILRQD+AFFD +TNTGE
Sbjct: 103 SKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGE 162
Query: 163 VVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222
VVGRMSGDTVLIQDAMGEKVGK +QL+ATF+GGF+IAF++GWLLTLVMLSSIPLL M+G
Sbjct: 163 VVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGA 222
Query: 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282
++AI+I+K +SRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+SNY K LVTAYK+GV
Sbjct: 223 LLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVI 282
Query: 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASP 342
EG + G+GLG + L+VFCSYAL+VWYGGKLIL++GY GGQV+N+++AVLTGSMSLG+ SP
Sbjct: 283 EGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSP 342
Query: 343 CLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIF 402
CLSAF AGQAAA+KMFETI R+P ID+Y T GK+LDDI+GDIEL+DVYF+YPARP+EQIF
Sbjct: 343 CLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIF 402
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
GFS+ ISSGTT ALVGQSGSGKSTV+SLIERFYDPQAG+VLIDGINLKEFQL+WIR KI
Sbjct: 403 RGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKI 462
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
GLVSQEPVLFT SIKDNIAYGK+DATTEEI+ A ELANA+KF+DKLPQG+DT+VGEHGTQ
Sbjct: 463 GLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQ 522
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNRTTV+VAHRLS
Sbjct: 523 LSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLS 582
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
TVRNADMIAVIH+GKIVEKG+H++L++DPEGAYSQLIRLQE K E + Q+ S S+
Sbjct: 583 TVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMS--SI 640
Query: 643 ESLRHSSHRMS-LRRSISRG-SSIGNSSRHSISVSFGLPSGQFADTALG-EPAGPSQPTE 699
ES + SS R S L RS+S+G SS GNSSRHS ++ FG P+G + E +QP
Sbjct: 641 ESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNM-FGFPAGIDGNVVQDQEEDDTTQPKT 699
Query: 700 EVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKD 759
E +V R+A LNKPEIPV++ G+I+A ANGVILPI+G+LISSVI+ FF+PP +LK+D
Sbjct: 700 E-PKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQPPKKLKED 758
Query: 760 SRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSS 819
+ FWA+I++ LG S + PAQ++FFA+AG KL+QRIRSMCFEKV+HMEV WFDEPE+SS
Sbjct: 759 TSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENSS 818
Query: 820 GAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVS 879
G IGARLSADAA++R LVGD+LA+ VQN+S+ AGLIIAF A WQLA ++L MLPLI ++
Sbjct: 819 GTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIALN 878
Query: 880 GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939
G+ MKFMKGFSADAK Y EASQVANDAVGSIRTVASFCAE+KVM +Y KKCE PMK G
Sbjct: 879 GFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKNG 938
Query: 940 IRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQS 999
IRQG+VSG GFG SFF+LF+ YAASFY GARLV+DGK TF VF+VFF+LTM A+ ISQS
Sbjct: 939 IRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQS 998
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQ 1059
SS S DS+KA AAASIFAI+DRESKIDPS ESG +L++VKG+IEL HVSFKYP+RPDVQ
Sbjct: 999 SSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARPDVQ 1058
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
+F+DL L IRAGKTVALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+ L+LKWLRQ
Sbjct: 1059 IFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWLRQ 1118
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGER 1179
Q GLVSQEP+LFN+TIRANIAYGKGGDA+E+EI +++E++NAH FI LQQGYDTMVGER
Sbjct: 1119 QTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMVGER 1178
Query: 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAH 1239
G+QLSGGQKQRVAIARAIVKDPK+LLLDEATSALDAESERVVQDALDRVM NRTT+VVAH
Sbjct: 1179 GIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVVAH 1238
Query: 1240 RLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAST 1287
RLSTIKNAD+IAVVKNGVIVEKGKH+ LINI DG YASL+ LH +A++
Sbjct: 1239 RLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLHLTAAS 1286
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Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
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Score = 1897 bits (4915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 935/1251 (74%), Positives = 1096/1251 (87%), Gaps = 20/1251 (1%)
Query: 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV 102
+VPFYKLF FADS+D LMI GSIGAIGNG+ LP MTLLFGDLI++FG NQNN + VD V
Sbjct: 40 TVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVDVV 99
Query: 103 SKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGE 162
SKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR YLKTILRQD+ FFD ETNTGE
Sbjct: 100 SKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGE 159
Query: 163 VVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222
VVGRMSGDTVLIQDAMGEKVGKF+QL++TF+GGF++AFIKGWLLTLVML+SIPLLAM+G
Sbjct: 160 VVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGA 219
Query: 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282
MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+++YKKF+ +AYKS +Q
Sbjct: 220 AMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQ 279
Query: 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASP 342
+G + G+GLG++ + F SYAL++W+GGK+ILE+GY GG V+NV++ V+ GSMSLG+ SP
Sbjct: 280 QGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSP 339
Query: 343 CLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIF 402
C++AF AGQAAA+KMFETI RKP IDAYD GK+L+DIRGDIEL+DV+FSYPARP+E+IF
Sbjct: 340 CVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIF 399
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
GFS+ I SG TAALVG+SGSGKSTVISLIERFYDP++G VLIDG+NLKEFQL+WIR KI
Sbjct: 400 DGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKI 459
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
GLVSQEPVLF+ SI +NIAYGK++AT EEI+ ATELANAAKFIDKLPQG+DT+VGEHGTQ
Sbjct: 460 GLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQ 519
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+MVNRTTVIVAHRLS
Sbjct: 520 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLS 579
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
TVRNADMIAVIHRGK+VEKG+HS+L++D EGAYSQLIRLQE NK+ + SE+S
Sbjct: 580 TVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDV-------KTSELSS 632
Query: 643 -ESLRHSSHRMSLRRSISRGSSIGNSSRHS----ISVSFGLPSGQFADTALGEPAGPSQP 697
S R+S +L++S+ SS+GNSSRH + ++ GL G + A + G +
Sbjct: 633 GSSFRNS----NLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTA-- 686
Query: 698 TEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELK 757
++E P+V R+A LNKPEIPV+L GT+AA NG I P++G+LIS VIE FFKP HELK
Sbjct: 687 SQEPLPKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELK 746
Query: 758 KDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEH 817
+DSRFWA+I++ALG S ++SP Q Y FAVAG KLI+RIRSMCFEK +HMEV+WFDEP++
Sbjct: 747 RDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQN 806
Query: 818 SSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877
SSG +GARLSADA +RALVGDAL+ VQN+++AA+GLIIAFTASW+LALIILVMLPLIG
Sbjct: 807 SSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIG 866
Query: 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMK 937
++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAEEKVMQ+YKK+CE P+K
Sbjct: 867 INGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIK 926
Query: 938 TGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGIS 997
GI+QG +SG GFG SFF+LF YA SFYAGARLVEDGK TF++VF+VFF+LTM AIGIS
Sbjct: 927 DGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGIS 986
Query: 998 QSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPD 1057
QSS+F+ DS+KAK AAASIFAIIDR+SKID SDE+GT+LE+VKG+IEL H+SF YP+RPD
Sbjct: 987 QSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPD 1046
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117
+Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+GHITLDGVE++KLQLKWL
Sbjct: 1047 IQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWL 1106
Query: 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASEMANAHKFICSLQQGYDTM 1175
RQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E+ANAHKFI S+QQGYDT+
Sbjct: 1107 RQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTV 1166
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTV 1235
VGERG+QLSGGQKQRVAIARAIVK+PKILLLDEATSALDAESERVVQDALDRVM NRTT+
Sbjct: 1167 VGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTI 1226
Query: 1236 VVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 1286
VVAHRLSTIKNAD+IAVVKNGVI EKG HE LI I G YASL+ LH +AS
Sbjct: 1227 VVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQLHMTAS 1277
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1888 bits (4890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 941/1253 (75%), Positives = 1092/1253 (87%), Gaps = 18/1253 (1%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPF+KLF FADS D LMI+G+IGA+GNGL P+MT+LFGD+I+ FG NQN+S+
Sbjct: 58 EKTKTVPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSDV 117
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
DK++KVA+KFVYLG+G+ +A+ LQV+ WMI+GERQA RIR LYL+TILRQD+AFFD ET
Sbjct: 118 SDKIAKVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFDVET 177
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
NTGEVVGRMSGDTVLIQDAMGEKVGK +QL++TF+GGF+IAF +GWLLTLVM+SSIPLL
Sbjct: 178 NTGEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLLV 237
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
MSG +AI+ISKM+SRGQ +YAKAA VVEQT+GSIRTVASFTGEKQA+SNY K LV+AY+
Sbjct: 238 MSGAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAYR 297
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+GV EG + G+GLG + +++FC+YAL+VWYGGK+ILE+GY GGQV+ ++ AVLTGSMSLG
Sbjct: 298 AGVFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSLG 357
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ASPCLSAF AGQAAA+KMFE I RKPEIDA DT GK+LDDIRGDIEL +V FSYPARP
Sbjct: 358 QASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPARPE 417
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
EQIF GFS+SISSG+T ALVGQSGSGKSTV+SLIERFYDPQ+GEV IDGINLKEFQL+WI
Sbjct: 418 EQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKWI 477
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLFT SIK+NIAYGK++AT EEIR ATELANA+KFIDKLPQG+DT+VGE
Sbjct: 478 RSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVGE 537
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE++VQEALDRIMVNRTTV+VA
Sbjct: 538 HGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVA 597
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
HRLSTVRNADMIAVIH+GKIVEKG+HS+L+ DPEGAYSQLIRLQE K++E + D Q+
Sbjct: 598 HRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDSTDEQK-- 655
Query: 639 EISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPT 698
+SMES++ SS R S S S FG P+G DT A P +
Sbjct: 656 -LSMESMKRSSLRKSSLSRSLSKRSSSFS-------MFGFPAG--IDT--NNEAIPEKDI 703
Query: 699 EEVAP----EVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754
+ P +V R+A LNKPEIP+++ G+IAA+ NGVILPI+G+LISSVI+ FFKPP
Sbjct: 704 KVSTPIKEKKVSFFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPE 763
Query: 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814
+LK D+RFWA+I++ LG S ++ PAQ+ FF++AG KL+QRIRSMCFEKV+ MEV WFDE
Sbjct: 764 QLKSDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDE 823
Query: 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874
E+SSGAIGARLSADAA+VR LVGDALA+ VQN+++ AGL+IAF ASWQLA I+L MLP
Sbjct: 824 TENSSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLP 883
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
LIG++GY MKFM GFSADAK YEEASQVANDAVGSIRTVASFCAEEKVM++YKKKCE
Sbjct: 884 LIGLNGYIYMKFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEG 943
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
PM+TGIRQG+VSG GFG SFF+LF+ YAASFYAGARLV+DGK TF VF+VFF+LTM A+
Sbjct: 944 PMRTGIRQGIVSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAV 1003
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
ISQSSS S DS+KA +AAASIFA+IDRESKIDPSDESG +L++VKG+IEL H+SFKYPS
Sbjct: 1004 AISQSSSLSPDSSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFKYPS 1063
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
RPDVQ+F+DL L IRAGKT+ALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+ LQL
Sbjct: 1064 RPDVQIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQL 1123
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDT 1174
KWLRQQ GLVSQEPVLFN+TIRANIAYGKGGDATE EI +A+E++NAH FI LQQGYDT
Sbjct: 1124 KWLRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQGYDT 1183
Query: 1175 MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTT 1234
MVGERG+QLSGGQKQRVAIARAIVKDPK+LLLDEATSALDAESERVVQDALDRVM NRTT
Sbjct: 1184 MVGERGVQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTT 1243
Query: 1235 VVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAST 1287
VVVAHRLSTIKNAD+IAVVKNGVIVEKGKHE LINI DG YASL+ LH SAST
Sbjct: 1244 VVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLHLSAST 1296
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1844 bits (4776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 920/1270 (72%), Positives = 1077/1270 (84%), Gaps = 22/1270 (1%)
Query: 30 HDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTF 89
H+ K EK ++VP YKLF FADS D LMI GS+GAIGNG+CLPLMTLLFGDLI++F
Sbjct: 14 HEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPLMTLLFGDLIDSF 73
Query: 90 GDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQ 149
G NQNN + VD VSKV +KFVYLG+G A+FLQV CWMITGERQA +IR YLKTILRQ
Sbjct: 74 GKNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRSNYLKTILRQ 133
Query: 150 DVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLV 209
D+ FFD ETNTGEVVGRMSGDTV IQDAMGEKVGKF+QL++TF+GGF +AF KGWLLTLV
Sbjct: 134 DIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAFAKGWLLTLV 193
Query: 210 MLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNY 269
ML+SIP LAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+++Y
Sbjct: 194 MLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSY 253
Query: 270 KKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVA 329
KK++ +AYKS +Q+G + G+GLG+++ + F SYAL++W+GGK+ILE+GY GG V+NV++
Sbjct: 254 KKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGKMILEKGYTGGSVINVIII 313
Query: 330 VLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDV 389
V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+L DIRGDIEL+DV
Sbjct: 314 VVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDIRGDIELKDV 373
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449
+FSYPARP+E+IF GFS+ I SG TAALVG+SGSGKSTVI+LIERFYDP+AGEVLIDGIN
Sbjct: 374 HFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKAGEVLIDGIN 433
Query: 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLP 509
LKEFQL+WIR KIGLV QEPVLF+ SI +NIAYGK++AT +EI+VATELANAAKFI+ LP
Sbjct: 434 LKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLP 493
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
QG+DT VGEHGTQLSGGQKQRIAIARAILKDPR+LLLDEATSALD ESE+VVQEALDR+M
Sbjct: 494 QGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVM 553
Query: 570 VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESE 629
VNRTTV+VAHRLSTVRNADMIAVIH GK+VEKG+HS+L++D GAYSQLIR QE NK
Sbjct: 554 VNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQEINKGH- 612
Query: 630 QTIDGQRKSEISMESLRHSSHRMSLRRSISRG--SSIGNSSRHSISVSFGLPSGQFADTA 687
D + S S R+S+ +S S+ G SS GNSSRH GL FA
Sbjct: 613 ---DAKPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHHSLNVLGL----FAGLD 665
Query: 688 LG--------EPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYG 739
LG E G + ++E +V R+A LNKPEIPV+L GT+ A NG I P++G
Sbjct: 666 LGSGSQRVGQEETGTT--SQEPLRKVSLTRIAALNKPEIPVLLLGTVVAAINGAIFPLFG 723
Query: 740 LLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM 799
+LIS VIE FFKP +LKKDSRFWA+I++ALG S ++SP+Q Y FAVAG KLI+RI+SM
Sbjct: 724 ILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKLIRRIQSM 783
Query: 800 CFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAF 859
CFEK +HMEVSWFDEPE+SSG +GARLS DAA +RALVGDAL+ VQN ++AA+GLIIAF
Sbjct: 784 CFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAASGLIIAF 843
Query: 860 TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFC 919
TASW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFC
Sbjct: 844 TASWELALIILVMLPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFC 903
Query: 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATF 979
AEEKVMQ+Y K+CE P+K G++QG +SG GFG SFF+LF YA SFYA ARLVEDGK TF
Sbjct: 904 AEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLVEDGKTTF 963
Query: 980 SDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDV 1039
DVF+VFF+LTM AIGISQSS+F+ DS+KAK AAASIFAIIDR+SKID SDE+GT+LE+V
Sbjct: 964 IDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENV 1023
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
KG+IEL H+SF YP+RP +Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+
Sbjct: 1024 KGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDS 1083
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASE 1157
G ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E
Sbjct: 1084 GQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAE 1143
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
+ANAHKFI S+QQGYDT+VGE+G+QLSGGQKQRVAIARAIVK+PKILLLDEATSALDAES
Sbjct: 1144 LANAHKFISSIQQGYDTVVGEKGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAES 1203
Query: 1218 ERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYAS 1277
ER+VQDALDRV+ NRTTVVVAHRLSTIKNAD+IA+VKNGVI E G HE LI I G YAS
Sbjct: 1204 ERLVQDALDRVIVNRTTVVVAHRLSTIKNADVIAIVKNGVIAENGTHETLIKIDGGVYAS 1263
Query: 1278 LIALHSSAST 1287
L+ LH +AS
Sbjct: 1264 LVQLHMTASN 1273
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI3|AB5B_ARATH ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1795 bits (4649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 876/1255 (69%), Positives = 1055/1255 (84%), Gaps = 28/1255 (2%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+KG T++VPFYKLF F+DS D LMI+GSIGAI NG+C PLMTLLFG+LI+ G N
Sbjct: 2 KKGNLEANTKTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPN 61
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
QNN E V++VSKV + VYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+
Sbjct: 62 QNNEEIVERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIG 121
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD E TGEVVGRMSGDTVLI DAMGEKVGKF+QL++TF+GGF+IAF++GWLLTLVML+
Sbjct: 122 FFDVEMTTGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLT 181
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLLAMSG +AI++++ SS+ Q AYAKA++VVEQT+GSIRTVASFTGEKQAMS+YK+
Sbjct: 182 SIPLLAMSGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKEL 241
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
+ AYKS V++G G+GLG++ L+ F +YAL W+GG++IL +GY GG V+NVMV V++
Sbjct: 242 INLAYKSNVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVS 301
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
S++LG+ASPCL+AF AG+AAA+KMFETI R+P ID +D GK+L+DIRG+IELRDV FS
Sbjct: 302 SSIALGQASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFS 361
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP E++F GFS+ I SGTT ALVG+SGSGKSTVISLIERFYDP +G+VLIDG++LKE
Sbjct: 362 YPARPKEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKE 421
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLF+ SI +NI YGK+ AT EEI+ A++LANAAKFIDKLP G+
Sbjct: 422 FQLKWIRGKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGL 481
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 482 ETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 541
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
TTVIVAHRLSTVRNAD+IAVIHRGKIVE+G+HS+L++D EGAYSQL+RLQE NKES+
Sbjct: 542 TTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESK--- 598
Query: 633 DGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPA 692
R S+ SRG++ S SV GL +GQ
Sbjct: 599 -------------RLEISDGSISSGSSRGNNSTRQDDDSFSV-LGLLAGQ---------- 634
Query: 693 GPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKP 752
++ ++E++ +V R+A LNKPEIP+++ GT+ NG I PI+G+L + VIE FFK
Sbjct: 635 DSTKMSQELSQKVSFTRIAALNKPEIPILILGTLVGAVNGTIFPIFGILFAKVIEAFFKA 694
Query: 753 PHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWF 812
PHELK+DSRFW++I++ LG + ++ P +Y FA+AG +LI+RIRSMCFEKV+HMEV WF
Sbjct: 695 PHELKRDSRFWSMIFVLLGVAAVIVYPTTNYLFAIAGGRLIRRIRSMCFEKVVHMEVGWF 754
Query: 813 DEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVM 872
DEP +SSGA+GARLSADAA +R LVGD+L V+N+++ GLIIAFTASW++A+IILV+
Sbjct: 755 DEPGNSSGAMGARLSADAALIRTLVGDSLCLSVKNVASLVTGLIIAFTASWEVAIIILVI 814
Query: 873 LPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKC 932
+P IG++GY Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAEEKVM++YKK+C
Sbjct: 815 IPFIGINGYIQIKFMKGFSADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRC 874
Query: 933 EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMT 992
E +K+GI+QG++SG GFG SFF+L++ YA+ FY GARLV+ G+ F+DVF+VF +LT+T
Sbjct: 875 EDTIKSGIKQGLISGVGFGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTLT 934
Query: 993 AIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY 1052
A+GISQ+SSF+ DS+K K AA SIF IIDR SKID DESG +LE+VKG+IEL H+SF Y
Sbjct: 935 AVGISQASSFAPDSSKGKGAAVSIFRIIDRISKIDSRDESGMVLENVKGDIELCHISFTY 994
Query: 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+RPDVQVFRDL L IRAG+TVALVGESGSGKSTV+SLLQRFYDPD+GHITLDGVE++KL
Sbjct: 995 QTRPDVQVFRDLCLSIRAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKL 1054
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQG 1171
+LKWLRQQMGLV QEPVLFNDTIRANIAYGKGG +ATEAEI AASE+ANAH+FI S+Q+G
Sbjct: 1055 RLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGGEEATEAEIIAASELANAHRFISSIQKG 1114
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN 1231
YDT+VGERG+QLSGGQKQRVAIARAIVK+PKILLLDEATSALDAESERVVQDALDRVM N
Sbjct: 1115 YDTVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVN 1174
Query: 1232 RTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 1286
RTT+VVAHRLSTIKNAD+IAVVKNGVI EKG HE LINI G YASL+ LH +AS
Sbjct: 1175 RTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLINIEGGVYASLVQLHINAS 1229
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI2|AB3B_ARATH ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1753 bits (4539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 881/1254 (70%), Positives = 1063/1254 (84%), Gaps = 32/1254 (2%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPFYKLF+F+DS D LMI+GSIGAIGNG+ PLMTLLFGDLI++ G NQ+N +
Sbjct: 3 EKTKTVPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDI 62
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
V+ VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+ FFD ET
Sbjct: 63 VEIVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVET 122
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
+TGEVVGRMSGDTVLI +AMGEKVGKF+QL+ATF+GGF++AF+KGWLLTLVML SIPLLA
Sbjct: 123 STGEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLA 182
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
++G M I++++ SSR Q AYAKA++VVEQT+GSIRTVASFTGEKQAM +Y++F+ AY+
Sbjct: 183 IAGAAMPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYR 242
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+ V++G + G+GLG+V + FCSYAL++W+GG++IL++GY GG+VVNVMV V+ SMSLG
Sbjct: 243 ASVKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLG 302
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ +PCL+AF AG+AAA+KMFETI RKP IDA+D GK+L+DIRG+IELRDV FSYPARP
Sbjct: 303 QTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPM 362
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
E++F GFS+ I SG TAALVG+SGSGKS+VISLIERFYDP +G VLIDG+NLKEFQL+WI
Sbjct: 363 EEVFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWI 422
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLF+ SI +NI YGK++AT EEI+ A +LANAA FIDKLP+G++TLVGE
Sbjct: 423 RGKIGLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGE 482
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+M++RTTVIVA
Sbjct: 483 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVA 542
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
HRLSTVRNADMIAVIHRGKIVE+G+HS+L++D EGAY+QLIRLQ+ KE ++
Sbjct: 543 HRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEP-------KRL 595
Query: 639 EISMESLRHSSHRMSLRRSISRGSSIGNSSR----HSISVSFGLPSGQFADTALGEPAGP 694
E S E LR RSI+RGSS +R S+SV GL LG
Sbjct: 596 ESSNE-LRD--------RSINRGSSRNIRTRVHDDDSVSV-LGL---------LGRQEN- 635
Query: 695 SQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754
++ + E + V R+A LNKPE +++ GT+ NG I PI+G+L + VIE FFKPPH
Sbjct: 636 TEISREQSRNVSITRIAALNKPETTILILGTLLGAVNGTIFPIFGILFAKVIEAFFKPPH 695
Query: 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814
++K+DSRFW++I++ LG S ++ P +Y FAVAG +LIQRIR MCFEKV+HMEV WFD+
Sbjct: 696 DMKRDSRFWSMIFVLLGVASLIVYPMHTYLFAVAGGRLIQRIRVMCFEKVVHMEVGWFDD 755
Query: 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874
PE+SSG IG+RLSADAA ++ LVGD+L+ V+N + A +GLIIAFTASW+LA+IILVM+P
Sbjct: 756 PENSSGTIGSRLSADAALIKTLVGDSLSLSVKNAAAAVSGLIIAFTASWKLAVIILVMIP 815
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
LIG++GY Q+KF+KGF+ADAK KYEEASQVANDAVGSIRTVASFCAEEKVM++YKK+CE
Sbjct: 816 LIGINGYLQIKFIKGFTADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRCED 875
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
+K+GI+QG++SG GFG SFF+L++ YA+ FY GARLV+ G+ F+DVF+VF +LTMTAI
Sbjct: 876 TIKSGIKQGLISGVGFGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTMTAI 935
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
GISQ+SSF+ DS+KAK AAASIF IID +S ID DESG +LE+VKG+IEL H+SF Y +
Sbjct: 936 GISQASSFAPDSSKAKGAAASIFGIIDGKSMIDSRDESGLVLENVKGDIELCHISFTYQT 995
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
RPDVQ+FRDL IRAG+TVALVGESGSGKSTV+SLLQRFYDPD+GHITLD VE++KLQL
Sbjct: 996 RPDVQIFRDLCFAIRAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDRVELKKLQL 1055
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD-ATEAEIQAASEMANAHKFICSLQQGYD 1173
KW+RQQMGLV QEPVLFNDTIR+NIAYGKGGD A+EAEI AA+E+ANAH FI S+QQGYD
Sbjct: 1056 KWVRQQMGLVGQEPVLFNDTIRSNIAYGKGGDEASEAEIIAAAELANAHGFISSIQQGYD 1115
Query: 1174 TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRT 1233
T+VGERG+QLSGGQKQRVAIARAIVK+PKILLLDEATSALDAESERVVQDALDRVM NRT
Sbjct: 1116 TVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRT 1175
Query: 1234 TVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAST 1287
TVVVAHRLSTIKNAD+IAVVKNGVIVEKG HE LINI G YASL+ LH SAS+
Sbjct: 1176 TVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLINIEGGVYASLVQLHISASS 1229
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M0M2|AB9B_ARATH ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1612 bits (4175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/1266 (64%), Positives = 995/1266 (78%), Gaps = 39/1266 (3%)
Query: 29 EHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINT 88
E S K K + V F+KLF+FAD D LM +G+I A GNGL P MTL+FG LIN
Sbjct: 2 EEKSSK-KNDGGNQKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINA 60
Query: 89 FGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILR 148
FG + V +V KVAVKF+YL + S + +FLQV+CWM+TGERQ+ IRGLYLKTILR
Sbjct: 61 FG-TTDPDHMVREVWKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILR 119
Query: 149 QDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208
QD+ +FD ETNTGEV+GRMSGDT+LIQDAMGEKVGKF QL+ TFLGGF IAF KG LL
Sbjct: 120 QDIGYFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAG 179
Query: 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268
V+ S IPL+ ++G M++++SKM+ RGQ AYA+A +VVEQT+G+IRTV +FTGEKQA
Sbjct: 180 VLCSCIPLIVIAGAAMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEK 239
Query: 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMV 328
Y+ L AYK+ VQ+GL +G GLG ++ ++FCSY L+VWYG KLI+E+GYNGGQV+NV+
Sbjct: 240 YESKLEIAYKTVVQQGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIF 299
Query: 329 AVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRD 388
AVLTG MSLG+ SP L+AF AG+AAAFKMFETI R P+IDAYD G +L+DIRGDIEL+D
Sbjct: 300 AVLTGGMSLGQTSPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKD 359
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448
VYF YPARP+ QIF+GFS+ + +G T ALVGQSGSGKSTVISLIERFYDP++G+VLID I
Sbjct: 360 VYFRYPARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNI 419
Query: 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508
+LK+ QL+WIR KIGLVSQEPVLF +IK+NIAYGK+DAT +EIR A ELANAAKFIDKL
Sbjct: 420 DLKKLQLKWIRSKIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKL 479
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
PQG+DT+VGEHGTQ+SGGQKQR+AIARAILK+P+ILLLDEATSALDAESE++VQ+AL +
Sbjct: 480 PQGLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNL 539
Query: 569 MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKES 628
M NRTTV+VAHRL+T+R AD+IAV+H+GKIVEKGTH ++++DPEGAYSQL+RLQE +K
Sbjct: 540 MSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSK-- 597
Query: 629 EQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTAL 688
E+ + +R E S++ R S R+S S + + S SF L S F
Sbjct: 598 EEATESER-PETSLDVERSGSLRLS-----SAMRRSVSRNSSSSRHSFSLASNMFF---- 647
Query: 689 GEPAGPSQPTEEVAPE--------VPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGL 740
P T+E+ E V +RLA+LNKPEIPV++ G+IAAM +G + PI+GL
Sbjct: 648 --PGVNVNQTDEMEDEENNVRHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGL 705
Query: 741 LISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMC 800
L+SS I F++P LKKDS FWALIY+ALG +F++ P Q+YFF +AG KLI+RIRSMC
Sbjct: 706 LLSSSINMFYEPAKILKKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMC 765
Query: 801 FEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT 860
F+KV+H E+SWFD D A+ R+LVGDALA IVQNI+T GLIIAFT
Sbjct: 766 FDKVVHQEISWFD---------------DTANSRSLVGDALALIVQNIATVTTGLIIAFT 810
Query: 861 ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920
A+W LALI+L + P I + GY Q KF+ GFSADAK YEEASQVANDAV SIRTVASFCA
Sbjct: 811 ANWILALIVLALSPFIVIQGYAQTKFLTGFSADAKAMYEEASQVANDAVSSIRTVASFCA 870
Query: 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFS 980
EEKVM LY++KC+ P K G+R G++SG GFG SFF L+ F +GA L++ GKATF
Sbjct: 871 EEKVMDLYQQKCDGPKKNGVRLGLLSGAGFGFSFFFLYCINCVCFVSGAGLIQIGKATFG 930
Query: 981 DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK 1040
+VFKVFF+LT+ AIG+SQ+S+ + DSNKAK +AASIF I+D KID S + GT L++V
Sbjct: 931 EVFKVFFALTIMAIGVSQTSAMAPDSNKAKDSAASIFDILDSTPKIDSSSDEGTTLQNVN 990
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G+IE HVSF+YP RPDVQ+FRDL L I +GKTVALVGESGSGKSTV+S+++RFY+PD+G
Sbjct: 991 GDIEFRHVSFRYPMRPDVQIFRDLCLTIPSGKTVALVGESGSGKSTVISMIERFYNPDSG 1050
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
I +D VEIQ +L WLRQQMGLVSQEP+LFN+TIR+NIAYGK G ATE EI AA++ AN
Sbjct: 1051 KILIDQVEIQTFKLSWLRQQMGLVSQEPILFNETIRSNIAYGKTGGATEEEIIAAAKAAN 1110
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
AH FI SL QGYDT VGERG+QLSGGQKQR+AIARAI+KDPKILLLDEATSALDAESERV
Sbjct: 1111 AHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERV 1170
Query: 1221 VQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIA 1280
VQDALDRVM NRTTVVVAHRL+TIKNAD+IAVVKNGVI EKG+HE L+ I G YASL+
Sbjct: 1171 VQDALDRVMVNRTTVVVAHRLTTIKNADVIAVVKNGVIAEKGRHETLMKISGGAYASLVT 1230
Query: 1281 LHSSAS 1286
LH SA+
Sbjct: 1231 LHMSAN 1236
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF1|AB7B_ARATH ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1569 bits (4062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 756/1248 (60%), Positives = 982/1248 (78%), Gaps = 18/1248 (1%)
Query: 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDK 101
+ + FYKLFTFAD D LM+IG++ A+ NGL P M++L G LIN FG + ++ +
Sbjct: 16 QRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFS-DHDHVFKE 74
Query: 102 VSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTG 161
VSKVAVKF+YL +G+ SFLQV+CWM+TGERQ+TRIR LYLKTILRQD+ FFD ETNTG
Sbjct: 75 VSKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNTG 134
Query: 162 EVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221
EV+GRMSGDT+LIQD+MGEKVGKF QL+++F+GGF +AFI G LTL +L +PL+ +G
Sbjct: 135 EVIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGTG 194
Query: 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281
G M ++SK + R Q AY +A +VV+Q +GSIRTV +FTGEKQ+M Y+K L AYKS V
Sbjct: 195 GAMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSMV 254
Query: 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS 341
++GL +G+G+G++M++V+C+Y ++WYG + I+E+GY GGQV+NV+ ++LTG M+LG+
Sbjct: 255 KQGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQTL 314
Query: 342 PCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQI 401
P L++F AG AAA+KMFETI RKP+IDAYD G++L++I+GDIELRDVYF YPARP+ QI
Sbjct: 315 PSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQI 374
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
F GFS+++ +G T ALVGQSGSGKSTVISLIERFYDP++GEVLIDGI+LK+FQ++WIR K
Sbjct: 375 FVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSK 434
Query: 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521
IGLVSQEP+LF +I++NI YGK DA+ +EIR A +LANA+ FIDKLPQG++T+VGEHGT
Sbjct: 435 IGLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGT 494
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581
QLSGGQKQRIAIARAILK+P+ILLLDEATSALDAESE++VQ+AL ++M++RTTV+VAHRL
Sbjct: 495 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRL 554
Query: 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEIS 641
+T+R ADMIAV+ +GK++EKGTH ++++DPEG YSQL+RLQE +K+ E K E+S
Sbjct: 555 TTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKKEEAIDKEPEKCEMS 614
Query: 642 MESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD-TALGEPAGPSQPTEE 700
+E I S +++ GLP D T S T+
Sbjct: 615 LE--------------IESSDSQNGIHSGTLTSPSGLPGVISLDQTEEFHENISSTKTQT 660
Query: 701 V--APEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKK 758
V EV RRLA+LNKPEI V+L G++AA+ +G++ P+ GLL+S I FF+P ++LK
Sbjct: 661 VKKGKEVSLRRLAHLNKPEISVLLLGSLAAVIHGIVFPVQGLLLSRTIRIFFEPSNKLKN 720
Query: 759 DSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHS 818
DS FWALI++ALG ++ P Q+Y FA+AG KLI+RIRS+ F++V+H ++SWFD+ ++S
Sbjct: 721 DSLFWALIFVALGLTDLIVIPLQNYLFAIAGAKLIKRIRSLSFDRVLHQDISWFDDTKNS 780
Query: 819 SGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
SG IGARLS DA++V+++VGD L I+QN++T IIAFTA+W LAL+ L++ P++
Sbjct: 781 SGVIGARLSTDASTVKSIVGDVLGLIMQNMATIIGAFIIAFTANWLLALMALLVAPVMFF 840
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
GY Q+KF+ GF A A+ KYEEASQVA+DAV SIRTVASFCAE+KVM LY++KC+ P +
Sbjct: 841 QGYYQIKFITGFGAKARGKYEEASQVASDAVSSIRTVASFCAEDKVMDLYQEKCDEPKQQ 900
Query: 939 GIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQ 998
G + G+VSG +G S+ L+ + F G+ L+++ +ATF + F+VFF+LT+TA+G++Q
Sbjct: 901 GFKLGLVSGLCYGGSYLALYVIESVCFLGGSWLIQNRRATFGEFFQVFFALTLTAVGVTQ 960
Query: 999 SSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDV 1058
+S+ + D NKAK +AASIF I+D + KID S E GTIL V G+IEL HVSF+YP RPD+
Sbjct: 961 TSTMAPDINKAKDSAASIFDILDSKPKIDSSSEKGTILPIVHGDIELQHVSFRYPMRPDI 1020
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
Q+F DL L I +G+TVALVGESGSGKSTV+SLL+RFYDPD+G I LD VEIQ L+L WLR
Sbjct: 1021 QIFSDLCLTISSGQTVALVGESGSGKSTVISLLERFYDPDSGKILLDQVEIQSLKLSWLR 1080
Query: 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGE 1178
+QMGLVSQEPVLFN+TI +NIAYGK G ATE EI A++ AN H FI SL QGY+T VGE
Sbjct: 1081 EQMGLVSQEPVLFNETIGSNIAYGKIGGATEEEIITAAKAANVHNFISSLPQGYETSVGE 1140
Query: 1179 RGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVA 1238
RG+QLSGGQKQR+AIARAI+KDPKILLLDEATSALDAESERVVQDALD+VM NRTTVVVA
Sbjct: 1141 RGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQDALDQVMVNRTTVVVA 1200
Query: 1239 HRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 1286
H L+TIK+ADMIAVVKNGVI E G+HE L+ I G YASL+A + SA+
Sbjct: 1201 HLLTTIKDADMIAVVKNGVIAESGRHETLMEISGGAYASLVAFNMSAN 1248
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/1252 (45%), Positives = 824/1252 (65%), Gaps = 24/1252 (1%)
Query: 37 QTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNN- 95
+ +K +S+PF+KLF+FAD D LM +GS+GAI +G +P+ LLFG ++N FG NQ +
Sbjct: 17 EKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDL 76
Query: 96 SETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFD 155
+ V +VS+ ++ FVYLG+ +S+ ++ CWM +GERQ +R YL+ +L+QDV FFD
Sbjct: 77 HQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFD 136
Query: 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIP 215
+ TG++V +S DT+L+QDA+ EKVG F+ ++TFL G ++ F+ W L L+ ++ IP
Sbjct: 137 TDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIP 196
Query: 216 LLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVT 275
+A +GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A++ Y +
Sbjct: 197 GIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQY 256
Query: 276 AYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSM 335
K G + G+A G+GLG I S+AL WY G I +GG+ + + + G M
Sbjct: 257 TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGM 316
Query: 336 SLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395
SLG++ L AF G+AA +K+ E IN++P I GK LD + G+IE +DV FSYP+
Sbjct: 317 SLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPS 376
Query: 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
RP+ IF F+I SG T A+VG SGSGKSTV+SLIERFYDP +G++L+DG+ +K QL
Sbjct: 377 RPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQL 436
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
+++R++IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP+G DT
Sbjct: 437 KFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQ 496
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575
VGE G QLSGGQKQRIAIARA+LKDP+ILLLDEATSALDA SE +VQEALDR+MV RTTV
Sbjct: 497 VGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTV 556
Query: 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+VAHRL T+RN D IAVI +G++VE GTH +L+ GAY+ LIR QE + +
Sbjct: 557 VVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQEMVGTRDFSNPST 615
Query: 636 RKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPS 695
R++ + S S+ +SLR R ++S+ +G AD + +
Sbjct: 616 RRTRSTRLSHSLSTKSLSLRSGSLR------------NLSYSYSTG--ADGRIEMISNAE 661
Query: 696 QPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE 755
+ APE RL LN PE P + G + ++ +G I P + +++S++IE F+ ++
Sbjct: 662 TDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYD 721
Query: 756 -LKKDSRFWALIYLALG---AGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811
+++ ++ + IY+ G G++L+ Q YFF++ G L R+R M ++ EV W
Sbjct: 722 SMERKTKEYVFIYIGAGLYAVGAYLI---QHYFFSIMGENLTTRVRRMMLSAILRNEVGW 778
Query: 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871
FDE EH+S I ARL+ DAA V++ + + ++ I+QN+++ I+AF W+++L+IL
Sbjct: 779 FDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILG 838
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931
PL+ ++ + Q +KGF+ D + + S +A + V +IRTVA+F A+ K++ L+ +
Sbjct: 839 TFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHE 898
Query: 932 CEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTM 991
P K + + SG FG S L+ A + GA LV G +TFS V KVF L +
Sbjct: 899 LRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVI 958
Query: 992 TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
TA ++++ S + + + A S+F+++DR+++IDP D +E ++G+IE HV F
Sbjct: 959 TANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFA 1018
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YPSRPDV VFRD NL+IRAG + ALVG SGSGKS+V+++++RFYDP AG + +DG +I++
Sbjct: 1019 YPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRR 1078
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
L LK LR ++GLV QEP LF TI NIAYGK G ATE+E+ A+ ANAH FI L +G
Sbjct: 1079 LNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDG-ATESEVIDAARAANAHGFISGLPEG 1137
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN 1231
Y T VGERG+QLSGGQKQR+AIARA++K+P +LLLDEATSALDAESE V+Q+AL+R+M+
Sbjct: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRG 1197
Query: 1232 RTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHS 1283
RTTVVVAHRLSTI+ D I V+++G IVE+G H L++ P+G Y+ L+ L +
Sbjct: 1198 RTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQT 1249
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/1267 (45%), Positives = 831/1267 (65%), Gaps = 27/1267 (2%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
E+ K+ E V F +LF FAD D LM IGS+GA +G LPL F DL+N+FG N
Sbjct: 17 EEPKKAE-IRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSN 75
Query: 93 QNNSETV-DKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDV 151
NN E + ++V K A+ F+ +G +S+ +++CWM +GERQ T++R YL+ L QD+
Sbjct: 76 SNNVEKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDI 135
Query: 152 AFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVML 211
FFD E T +VV ++ D V++QDA+ EK+G F+ MATF+ GF++ F W L LV L
Sbjct: 136 QFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTL 195
Query: 212 SSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKK 271
+ +PL+A+ GG+ +SK+S++ Q + ++A ++VEQT+ IR V +F GE +A Y
Sbjct: 196 AVVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSS 255
Query: 272 FLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVL 331
L A K G + GLA G+GLG +VFC YAL +WYGG L+ NGG + M AV+
Sbjct: 256 ALKIAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVM 315
Query: 332 TGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYF 391
G ++LG+++P ++AF + AA K+F I+ KP I+ G LD + G +EL++V F
Sbjct: 316 IGGLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDF 375
Query: 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
SYP+RP+ +I + F +S+ +G T ALVG SGSGKSTV+SLIERFYDP +G+VL+DG +LK
Sbjct: 376 SYPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLK 435
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
+L+W+R++IGLVSQEP LF SIK+NI G+ DA EI A +ANA FI KLP G
Sbjct: 436 TLKLRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDG 495
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
DT VGE G QLSGGQKQRIAIARA+LK+P ILLLDEATSALD+ESEK+VQEALDR M+
Sbjct: 496 FDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIG 555
Query: 572 RTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE-GAYSQLIRLQEANKESEQ 630
RTT+I+AHRLST+R AD++AV+ +G + E GTH +L E G Y++LI++QEA E+
Sbjct: 556 RTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHET-- 613
Query: 631 TIDGQRKSEISMESLRHSSHRMSLRRSI-SRGSSIGNSSRHSISVSFGLPSGQFADTALG 689
+ RKS S R SS R S+ I +R SS G S S L +D +L
Sbjct: 614 AMSNARKS-----SARPSSARNSVSSPIMTRNSSYGRS-----PYSRRLSDFSTSDFSLS 663
Query: 690 EPAG--PSQPTEEVAPEVPTR---RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISS 744
A P+ E++A + RLA +N PE L G++ ++ G + + ++S+
Sbjct: 664 IDASSYPNYRNEKLAFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSA 723
Query: 745 VIETFFKPPHE--LKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFE 802
V+ ++ P HE +K+ ++ L+ + L + + + + Q F+ + G L +R+R
Sbjct: 724 VLSVYYNPDHEYMIKQIDKYCYLL-IGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLS 782
Query: 803 KVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTAS 862
V+ E++WFD+ E+ S I ARL+ DA +VR+ +GD ++ IVQN + F
Sbjct: 783 AVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQ 842
Query: 863 WQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE 922
W+LAL+++ + P++ + Q FM GFS D + + + +Q+A +A+ ++RTVA+F +E
Sbjct: 843 WRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEA 902
Query: 923 KVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982
K+++LY E P+K +G ++G G+G + F L+A YA + + LV+ G + FS
Sbjct: 903 KIVRLYTANLEPPLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKT 962
Query: 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILED-VKG 1041
+VF L ++A G +++ + + D K A S+F ++DR+++I+P D T + D ++G
Sbjct: 963 IRVFMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRG 1022
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E+EL H+ F YPSRPD+Q+FRDL+L+ RAGKT+ALVG SG GKS+V+SL+QRFY+P +G
Sbjct: 1023 EVELKHIDFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGR 1082
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
+ +DG +I+K LK +R+ + +V QEP LF TI NIAYG ATEAEI A+ +A+A
Sbjct: 1083 VMIDGKDIRKYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHEC-ATEAEIIQAATLASA 1141
Query: 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVV 1221
HKFI +L +GY T VGERG+QLSGGQKQR+AIARA+V+ +I+LLDEATSALDAESER V
Sbjct: 1142 HKFISALPEGYKTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSV 1201
Query: 1222 QDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI-NIPDGFYASLIA 1280
Q+ALD+ RT++VVAHRLSTI+NA +IAV+ +G + E+G H +L+ N PDG YA +I
Sbjct: 1202 QEALDQACSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQ 1261
Query: 1281 LHSSAST 1287
L T
Sbjct: 1262 LQRFTHT 1268
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1288 | ||||||
| 224130858 | 1294 | multidrug/pheromone exporter, MDR family | 0.994 | 0.989 | 0.778 | 0.0 | |
| 225437787 | 1297 | PREDICTED: ABC transporter B family memb | 0.997 | 0.990 | 0.779 | 0.0 | |
| 224064756 | 1224 | multidrug/pheromone exporter, MDR family | 0.949 | 0.999 | 0.800 | 0.0 | |
| 356533485 | 1282 | PREDICTED: ABC transporter B family memb | 0.989 | 0.994 | 0.782 | 0.0 | |
| 356499544 | 1282 | PREDICTED: ABC transporter B family memb | 0.990 | 0.995 | 0.778 | 0.0 | |
| 255548261 | 1269 | multidrug resistance protein 1, 2, putat | 0.978 | 0.992 | 0.766 | 0.0 | |
| 224130846 | 1294 | multidrug/pheromone exporter, MDR family | 0.996 | 0.991 | 0.762 | 0.0 | |
| 357442065 | 1289 | ABC transporter B family member [Medicag | 0.991 | 0.990 | 0.769 | 0.0 | |
| 255548259 | 1292 | multidrug resistance protein 1, 2, putat | 0.996 | 0.993 | 0.759 | 0.0 | |
| 255548257 | 1292 | multidrug resistance protein 1, 2, putat | 0.996 | 0.993 | 0.759 | 0.0 |
| >gi|224130858|ref|XP_002320942.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861715|gb|EEE99257.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2063 bits (5345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1006/1293 (77%), Positives = 1159/1293 (89%), Gaps = 12/1293 (0%)
Query: 2 NGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALM 61
NG+ + +EAS SKS E K S G++ + K K E+T++VPF KLF+FADS D LM
Sbjct: 8 NGDKSMDEASTSKSLEVEEKSSGGRGDQQEPVKSKGDEETKTVPFLKLFSFADSTDILLM 67
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+G+IGA+GNG P+M++LFGDL+N+FG NQNN + VD V+KVA+ FVYLGIGS +A+F
Sbjct: 68 ILGTIGAVGNGASFPIMSILFGDLVNSFGQNQNNKDVVDSVTKVALNFVYLGIGSAVAAF 127
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181
LQV CWM+TGERQA RIRG YLKTIL+QDVAFFD ETNTGEVVGRMSGDTVLIQDAMGEK
Sbjct: 128 LQVACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEK 187
Query: 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
VGKF+QL++TF+GGF++AF+KGWLLTLVMLSSIPLL ++G +AI+I++M+SRGQ AYAK
Sbjct: 188 VGKFIQLVSTFIGGFIVAFVKGWLLTLVMLSSIPLLVIAGAGLAIIIARMASRGQTAYAK 247
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301
AA+VVEQ IGSIRTVASFTGEKQA+SNYKKFL TAY SGVQEG AG+GLG+VML+VFCS
Sbjct: 248 AATVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQEGFTAGLGLGIVMLLVFCS 307
Query: 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361
YAL++W+GGK+ILE+GYNGG V+NV+VAVLTGSMSLG+ASPC+SAF AGQAAA+KMFETI
Sbjct: 308 YALAIWFGGKMILEKGYNGGDVINVIVAVLTGSMSLGQASPCMSAFAAGQAAAYKMFETI 367
Query: 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421
NRKPEID+ DT GKILDDI GD+ELRDVYF+YPARP+EQIF+GFS+ I SGTT ALVGQS
Sbjct: 368 NRKPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFAGFSLFIPSGTTTALVGQS 427
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKSTVISLIERFYDPQAGEVLIDG NLKEFQL+WIR+KIGLVSQEPVLF SIKDNIA
Sbjct: 428 GSGKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIGLVSQEPVLFASSIKDNIA 487
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
YGKD ATTEEIR ATELANAAKFIDKLPQGIDT+VGEHGTQLSGGQKQRIAIARAILKDP
Sbjct: 488 YGKDGATTEEIRAATELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKDP 547
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRLSTV NADMIAVI+RGK+VEK
Sbjct: 548 RILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVINADMIAVIYRGKMVEK 607
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661
G+HS+L++DPEGAYSQLIRLQE NKES+Q + +KS +S ESLR SS R+SL+RSISRG
Sbjct: 608 GSHSELLKDPEGAYSQLIRLQEVNKESKQETEDPKKSALSAESLRQSSQRISLKRSISRG 667
Query: 662 SS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPS-----QPTEEVAPEVPTRRLAYLNK 715
SS +G+SSR+S+SVSFGLP+G P P+ P ++ P+VP RLAYLNK
Sbjct: 668 SSGVGHSSRNSLSVSFGLPTG------FNVPDNPTSELEVSPQKQQTPDVPISRLAYLNK 721
Query: 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSF 775
PE+PV++AG+IAA+ NGVILPIYG+L+SSVI+ FF+PP EL+KDS+FWAL+++ LG SF
Sbjct: 722 PEVPVLIAGSIAAILNGVILPIYGILLSSVIKIFFEPPDELRKDSKFWALMFMTLGLASF 781
Query: 776 LLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRA 835
++ P+Q+Y F+VAG KLIQRIRSMCFEKV+HMEV WFDEPEHSSG IGARLSADAA VRA
Sbjct: 782 VVYPSQTYLFSVAGCKLIQRIRSMCFEKVVHMEVGWFDEPEHSSGEIGARLSADAAIVRA 841
Query: 836 LVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK 895
LVGD+L+++VQNI++A AGL+IAF ASWQLAL+ILV+LPLIG++G+ Q+KFMKGFSADAK
Sbjct: 842 LVGDSLSQLVQNIASAVAGLVIAFAASWQLALVILVLLPLIGLNGFVQVKFMKGFSADAK 901
Query: 896 MKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFF 955
YEEASQVANDAVGSIRTVASFCAEEKVMQLY++KCE PM+TGIRQGM+SG GFG SFF
Sbjct: 902 KMYEEASQVANDAVGSIRTVASFCAEEKVMQLYRRKCEGPMRTGIRQGMISGTGFGVSFF 961
Query: 956 LLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAAS 1015
LLF+ YA +FY GA+LV GK F+DVF+VFF+LTM AIGISQSSSF+ DS+KAK AAAS
Sbjct: 962 LLFSVYATTFYVGAQLVRHGKTNFADVFRVFFALTMAAIGISQSSSFAPDSSKAKGAAAS 1021
Query: 1016 IFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVA 1075
IFAIIDR+SKIDPSDESGT L++VKGEIEL H+SFKYPSRPD+++FRDL+L I +GKTVA
Sbjct: 1022 IFAIIDRKSKIDPSDESGTTLDNVKGEIELRHISFKYPSRPDIEIFRDLSLAIHSGKTVA 1081
Query: 1076 LVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135
LVGESGSGKSTV+SLLQRFYDPD+GHITLDG++IQ LQLKWLRQQMGLVSQEPVLFN+TI
Sbjct: 1082 LVGESGSGKSTVISLLQRFYDPDSGHITLDGIDIQSLQLKWLRQQMGLVSQEPVLFNETI 1141
Query: 1136 RANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195
RANIAYGK G+ATEAEI AASE+ANAHKFI LQQGYDT+VGERG QLSGGQKQRVAIAR
Sbjct: 1142 RANIAYGKEGNATEAEILAASELANAHKFISGLQQGYDTVVGERGTQLSGGQKQRVAIAR 1201
Query: 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKN 1255
A+VK PKILLLDEATSALDAESERVVQDALDRVM +RTTVVVAHRLSTIKNAD+IAVVKN
Sbjct: 1202 AMVKSPKILLLDEATSALDAESERVVQDALDRVMVSRTTVVVAHRLSTIKNADVIAVVKN 1261
Query: 1256 GVIVEKGKHENLINIPDGFYASLIALHSSASTS 1288
GVIVEKGKHE LI+I DGFYASL+ALH SASTS
Sbjct: 1262 GVIVEKGKHETLIHIKDGFYASLVALHMSASTS 1294
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437787|ref|XP_002273987.1| PREDICTED: ABC transporter B family member 11 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2034 bits (5270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/1293 (77%), Positives = 1144/1293 (88%), Gaps = 8/1293 (0%)
Query: 1 MNGESNSNEASASKS---QEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSAD 57
+NG++ +EA+ S + E K S +G + DSEK K+ K +VPF+KLF+FADS D
Sbjct: 7 LNGKTYMHEATTSSRGALETETVKSSGQNGKQQDSEKSKEEGKPSTVPFHKLFSFADSTD 66
Query: 58 TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117
LMI G+IGA GNG+C+PLM +LFGDLI++FG NQNN + VD VSKV++KFVYL +G+G
Sbjct: 67 MLLMITGTIGAAGNGICMPLMAILFGDLIDSFGQNQNNKDVVDIVSKVSLKFVYLAVGAG 126
Query: 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
IA+F QV CWM+TGERQA RIR LYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDA
Sbjct: 127 IAAFFQVACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDA 186
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
MGEKVGKF+QL++TF+GGF+IAFIKGWLLTLVMLSSIPLL ++GG M++ +SKM++RGQ
Sbjct: 187 MGEKVGKFIQLVSTFIGGFIIAFIKGWLLTLVMLSSIPLLVIAGGAMSLFLSKMATRGQN 246
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
AYAKAA+VVEQTIGSIRTVASFTGEKQA++ Y +FLV AYKSGV EGLAAG+GLG VM I
Sbjct: 247 AYAKAATVVEQTIGSIRTVASFTGEKQAVTKYNQFLVNAYKSGVFEGLAAGLGLGTVMFI 306
Query: 298 VFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKM 357
+F SYAL+VW+G K+ILE+GY GG V+NV++AVLTGSMSLG+ASPC+SAF AGQAAAFKM
Sbjct: 307 IFASYALAVWFGAKMILEKGYTGGTVLNVIIAVLTGSMSLGQASPCMSAFAAGQAAAFKM 366
Query: 358 FETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAAL 417
F+TI+RKPEID DTKGK L+DI+G+IELRDVYFSYPARP+EQIFSGFS+SI SGTTAAL
Sbjct: 367 FQTIHRKPEIDVSDTKGKKLEDIQGEIELRDVYFSYPARPDEQIFSGFSLSIPSGTTAAL 426
Query: 418 VGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477
VGQSGSGKSTVISLIERFYDP AGEVLIDGINLKEFQL+WIR KIGLVSQEPVLFT SI+
Sbjct: 427 VGQSGSGKSTVISLIERFYDPLAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIR 486
Query: 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
DNIAYGK+ AT EEIR A ELANA+KFIDKLPQG+DT+VGEHGTQLSGGQKQR+AIARAI
Sbjct: 487 DNIAYGKEGATIEEIRAAAELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAI 546
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
LKDPRILLLDEATSALDAESE+VVQEALDRIMVNRTT+IVAHRLSTVRNADMI VIHRGK
Sbjct: 547 LKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTIIVAHRLSTVRNADMIGVIHRGK 606
Query: 598 IVEKGTHSKLVEDPEGAYSQLIRLQEANKESE-QTIDGQRKSEISMESLRHSSHRMSLRR 656
+VEKG+H++L++DPEGAYSQLIRLQE NKESE Q D Q + + S+E R SS RMS R
Sbjct: 607 MVEKGSHTELLKDPEGAYSQLIRLQEVNKESENQATDSQDRPDGSIEFGRQSSQRMSFLR 666
Query: 657 SISRGSS-IGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLN 714
SISRGSS GNSSRHS SVSFGLP+G D A+ + P + E PEVP RRLAYLN
Sbjct: 667 SISRGSSGPGNSSRHSFSVSFGLPTGLGLPDNAIADAEAPR--SSEQPPEVPIRRLAYLN 724
Query: 715 KPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGS 774
KPEIPV+L GT+AA+ NG ILPI+G+LISSVI+TF++PPH+L+KDS FWALI+L LG S
Sbjct: 725 KPEIPVLLLGTVAAIVNGTILPIFGILISSVIKTFYEPPHQLRKDSNFWALIFLVLGVVS 784
Query: 775 FLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVR 834
FL PA++Y F+VAG KLIQR+RSMCFEKV+HMEV WFD+PEHSSGAIGARLSADAA++R
Sbjct: 785 FLAFPARTYLFSVAGCKLIQRVRSMCFEKVVHMEVGWFDQPEHSSGAIGARLSADAATIR 844
Query: 835 ALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADA 894
ALVGDALA++VQN ++A AGL IAF ASWQLA IIL ++PLIG++GY Q+KF+KGFSADA
Sbjct: 845 ALVGDALAQVVQNAASAIAGLAIAFAASWQLAFIILALIPLIGLNGYVQIKFLKGFSADA 904
Query: 895 KMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954
KM YEEASQVANDAVGSIRTVASFCAEEKVM LYKKKCE PM+TGIRQG+VSG GFG SF
Sbjct: 905 KMMYEEASQVANDAVGSIRTVASFCAEEKVMDLYKKKCEGPMRTGIRQGLVSGIGFGVSF 964
Query: 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAA 1014
FLLF YA FYAGARLVE GK TF DVF+VFF+LTM +GISQSSSFS DS+KAKSAAA
Sbjct: 965 FLLFCVYALCFYAGARLVEAGKTTFGDVFRVFFALTMATVGISQSSSFSPDSSKAKSAAA 1024
Query: 1015 SIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTV 1074
SIF IIDR+S IDPSDESGT LE+VKGEIEL H+SFKYP+RPD+Q+FRDL+L IR+GKTV
Sbjct: 1025 SIFTIIDRKSTIDPSDESGTKLENVKGEIELRHISFKYPTRPDIQIFRDLSLTIRSGKTV 1084
Query: 1075 ALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134
ALVGESGSGKSTV++LLQRFYDPD+GHITLDGV+IQ LQL+WLRQQMGLVSQEPVLFNDT
Sbjct: 1085 ALVGESGSGKSTVIALLQRFYDPDSGHITLDGVDIQSLQLRWLRQQMGLVSQEPVLFNDT 1144
Query: 1135 IRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194
IRANIAYGK G TEAE+ AASE+ANAHKFI LQQGYDTMVGERG+QLSGGQKQRVAIA
Sbjct: 1145 IRANIAYGKEGHTTEAEVIAASELANAHKFISGLQQGYDTMVGERGIQLSGGQKQRVAIA 1204
Query: 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVK 1254
RA+VK PKILLLDEATSALDAESERVVQDALDRVM NRTTVVVAHRLSTIK AD+IAVVK
Sbjct: 1205 RAMVKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKGADVIAVVK 1264
Query: 1255 NGVIVEKGKHENLINIPDGFYASLIALHSSAST 1287
NGVIVEKGKHE LINI DGFYASLIALH SAS+
Sbjct: 1265 NGVIVEKGKHETLINIKDGFYASLIALHMSASS 1297
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064756|ref|XP_002301547.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222843273|gb|EEE80820.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2022 bits (5238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1229 (80%), Positives = 1126/1229 (91%), Gaps = 6/1229 (0%)
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MI+G++GAIGNG +P+M++LFGDLIN+FG NQNN + VD VSKV++KFVYLG+GS + S
Sbjct: 1 MILGTVGAIGNGASMPIMSILFGDLINSFGKNQNNKDVVDLVSKVSLKFVYLGVGSAVGS 60
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRG YLKTILRQDVAFFD ETN+GEVVGRMSGDTVLIQDAMGE
Sbjct: 61 FLQVACWMVTGERQAARIRGTYLKTILRQDVAFFDKETNSGEVVGRMSGDTVLIQDAMGE 120
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKF+QL++TF+GGF+I+FIKGWLLTLVMLSSIPLL ++G ++IMI++M+SRGQ AY+
Sbjct: 121 KVGKFIQLVSTFIGGFIISFIKGWLLTLVMLSSIPLLVIAGAGLSIMIARMASRGQTAYS 180
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAASVVEQTIGSIRTVASFTGEKQA+SNYKKFLVTAY SGVQEGLAAG+GLG+VML+VFC
Sbjct: 181 KAASVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVQEGLAAGVGLGIVMLVVFC 240
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL+VW+GG++ILE+GY GG V+NV+VAVLTGSMSLG+ASPC+SAF +GQAAA+KMFE
Sbjct: 241 SYALAVWFGGRMILEKGYTGGDVINVIVAVLTGSMSLGQASPCMSAFASGQAAAYKMFEA 300
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
INRKPEIDA DT+GKILDDIRGDIELRDVYF+YPARP+EQIFSGFS+ I SG+TAALVGQ
Sbjct: 301 INRKPEIDASDTRGKILDDIRGDIELRDVYFNYPARPDEQIFSGFSLFIPSGSTAALVGQ 360
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL+WIR+KIGLVSQEPVLFT SIKDNI
Sbjct: 361 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLKWIREKIGLVSQEPVLFTSSIKDNI 420
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD ATTEEIR A ELANAAKFIDKLPQGIDT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 421 AYGKDMATTEEIRAAAELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKD 480
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI+RGK+VE
Sbjct: 481 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIYRGKMVE 540
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KG+HS+L++DPEGAYSQLIRLQE NKESEQ D Q+KS+IS ESLRHSS ++SL+RSISR
Sbjct: 541 KGSHSELLKDPEGAYSQLIRLQEVNKESEQEADDQKKSDISTESLRHSSQKISLKRSISR 600
Query: 661 GSS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
GSS GNSSR S SV+FGLP+G A E S P ++ P+VP RL YLNKPE+P
Sbjct: 601 GSSDFGNSSRRSFSVTFGLPTGFNAPDNYTEELEAS-PQKQQTPDVPISRLVYLNKPEVP 659
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
V++AG IAA+ NGVI PI+G+LIS VI+TFF+PPHEL+KDS+FWAL+++ LG SF++ P
Sbjct: 660 VLIAGAIAAIINGVIFPIFGILISRVIKTFFEPPHELRKDSKFWALMFMTLGLASFVVYP 719
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
+Q+Y F+VAG KLIQRIRSMCFEK++HMEV WFDEPEHSSGAIGARLSADAA+VR LVGD
Sbjct: 720 SQTYLFSVAGCKLIQRIRSMCFEKMVHMEVGWFDEPEHSSGAIGARLSADAATVRGLVGD 779
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
+L+++VQNI++A AGL+IAF A WQLA +ILV+LPLIG++G+ QMKF+KGFS+DAK
Sbjct: 780 SLSQLVQNIASAVAGLVIAFVACWQLAFVILVLLPLIGLNGFIQMKFLKGFSSDAK---- 835
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE PM+TGIRQG++SG GFG SFFLLF+
Sbjct: 836 EASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPMRTGIRQGLISGAGFGVSFFLLFS 895
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFY GA+LV+ GK TF+DVF+VFF+LTM AIGISQSSSF+ DS+KAK+AAASIF+I
Sbjct: 896 VYATSFYVGAQLVQHGKTTFADVFQVFFALTMAAIGISQSSSFAPDSSKAKAAAASIFSI 955
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
IDR+S+ID SDESGT L++VKGEIEL H+ FKYP+RPD+++FRDL+L I +GKTVALVGE
Sbjct: 956 IDRKSQIDSSDESGTTLDNVKGEIELRHIGFKYPARPDIEIFRDLSLAIHSGKTVALVGE 1015
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKSTV+SLLQRFYDP +GHITLDG++I+ LQLKWLRQQMGLVSQEPVLFN+TIRANI
Sbjct: 1016 SGSGKSTVISLLQRFYDPHSGHITLDGIDIKSLQLKWLRQQMGLVSQEPVLFNETIRANI 1075
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199
AYGK GDATEAEI AASE+ANAHKFI SLQQGYDT+VGERG+QLSGGQKQRVAIARAIVK
Sbjct: 1076 AYGKEGDATEAEILAASELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVK 1135
Query: 1200 DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIV 1259
PKILLLDEATSALDAESERVVQDALDRVM NRTTVVVAHRLSTIKNAD+IAVVKNGVIV
Sbjct: 1136 SPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIV 1195
Query: 1260 EKGKHENLINIPDGFYASLIALHSSASTS 1288
EKGKHE LI+I DGFYASL+ALH SASTS
Sbjct: 1196 EKGKHETLIHIKDGFYASLVALHMSASTS 1224
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533485|ref|XP_003535294.1| PREDICTED: ABC transporter B family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2013 bits (5216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/1288 (78%), Positives = 1143/1288 (88%), Gaps = 13/1288 (1%)
Query: 2 NGESNS-NEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
NGE ++AS S+++ E S N EK KQ EK E+VPF+KLF FADS D L
Sbjct: 5 NGEERKHDDASTSENRAET------STNGEKEEKSKQQEKPETVPFHKLFAFADSTDILL 58
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
M +G+IGAIGNGL LPLMTLLFG +I++FG NQ N+ V++VSKV++KFVYL +GSG+A+
Sbjct: 59 MAVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQRNTNVVEEVSKVSLKFVYLAVGSGLAA 118
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQVT WM+TGERQA RIRGLYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 119 FLQVTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGE 178
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL+ATF+GGF+IAFIKGWLLT+VMLS++PLLA+SG MA++I +M+SRGQ AYA
Sbjct: 179 KVGKFLQLIATFIGGFVIAFIKGWLLTVVMLSTLPLLALSGATMAVIIGRMASRGQTAYA 238
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VML++FC
Sbjct: 239 KAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGFIAGAGLGTVMLVIFC 298
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
YAL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLGEASP LSAF AGQAAA+KMF+T
Sbjct: 299 GYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGEASPSLSAFAAGQAAAYKMFQT 358
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKIL+DI+G+IELRDVYFSYPARP E IF+GFS+ I SGTTAALVGQ
Sbjct: 359 IERKPEIDAYDPNGKILEDIQGEIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQ 418
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQAGEVLIDGINLKEFQL+WIR KIGLVSQEPVLF SIKDNI
Sbjct: 419 SGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNI 478
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGK+ AT EEIR A+ELANAAKFIDKLPQG+DT+V EHGTQLSGGQKQRIAIARAILK+
Sbjct: 479 AYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVCEHGTQLSGGQKQRIAIARAILKN 538
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE+VVQEALDRIMVNRTT++VAHRLSTVRNADMIAVIHRGK+VE
Sbjct: 539 PRILLLDEATSALDAESERVVQEALDRIMVNRTTIVVAHRLSTVRNADMIAVIHRGKMVE 598
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KGTHS+L++DPEGAYSQLIRLQE +KE+E D K+E+S+ES R SS + SL+RSISR
Sbjct: 599 KGTHSELLKDPEGAYSQLIRLQEVSKETEGNADQHDKTELSVESFRQSSQKRSLQRSISR 658
Query: 661 GSSIGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
GSS+GNSSRHS SVSFGLP+G AD L SQP EE APEVP RLA LNKPEIP
Sbjct: 659 GSSLGNSSRHSFSVSFGLPTGVNVADPELEN----SQPKEE-APEVPLSRLASLNKPEIP 713
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
VI+ G++AA+ANGVI PI+G+LISSVI+TF++P E+KKDS FWAL+++ LG SFL+ P
Sbjct: 714 VIVIGSVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSEFWALMFMILGLASFLIIP 773
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
A+ YFF+VAG KLIQRIR MCFEKV++MEVSWFDEPE+SSGAIGARLSADAASVRALVGD
Sbjct: 774 ARGYFFSVAGCKLIQRIRLMCFEKVVNMEVSWFDEPENSSGAIGARLSADAASVRALVGD 833
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
AL +VQN +TA AGLIIAF ASWQLALIILV++PLIGV+GY QMKFMKGFSADAKM YE
Sbjct: 834 ALGLLVQNFATALAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYE 893
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAE+KVM+LYKKKCE PMKTGIRQG++SG GFG SFFLLF
Sbjct: 894 EASQVANDAVGSIRTVASFCAEDKVMELYKKKCEGPMKTGIRQGLISGSGFGVSFFLLFC 953
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFYAGARL++ GK TFSDVF+VFF+LTM AIG+SQSSSF+ DS+KAKSA ASIF I
Sbjct: 954 VYATSFYAGARLMDSGKTTFSDVFQVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGI 1013
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
ID++SKID SD SG+ L+ +KGEIEL HVSFKYPSRPD+Q+FRDL L I +GKTVALVGE
Sbjct: 1014 IDKKSKIDSSDASGSTLDSIKGEIELRHVSFKYPSRPDMQIFRDLRLTIHSGKTVALVGE 1073
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKSTV++LLQRFYDPD+G ITLDGVEI++LQLKWLRQQMGLVSQEPVLFN+++RANI
Sbjct: 1074 SGSGKSTVIALLQRFYDPDSGQITLDGVEIRELQLKWLRQQMGLVSQEPVLFNESLRANI 1133
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199
AYGKGGDATEAEI AA+E+ANAHKFI LQQGYDT+VGERG QLSGGQKQRVAIARAI+K
Sbjct: 1134 AYGKGGDATEAEIIAAAELANAHKFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIK 1193
Query: 1200 DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIV 1259
PKILLLDEATSALDAESERVVQDALD+VM NRTTVVVAHRLSTIKNAD+IAVVKNGVIV
Sbjct: 1194 SPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIV 1253
Query: 1260 EKGKHENLINIPDGFYASLIALHSSAST 1287
EKGKHE LIN+ DGFYASL+ LH+SAST
Sbjct: 1254 EKGKHEKLINLSDGFYASLVQLHTSAST 1281
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499544|ref|XP_003518599.1| PREDICTED: ABC transporter B family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2010 bits (5208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1002/1287 (77%), Positives = 1140/1287 (88%), Gaps = 11/1287 (0%)
Query: 2 NGESNSN-EASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
NGE + EAS S++ E S N EKGKQ EK E+VPF+KLF FADS D L
Sbjct: 5 NGEERKHHEASTSENSAET------STNGEKREKGKQKEKPETVPFHKLFAFADSTDILL 58
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
M +G+IGAIGNGL LPLMTLLFG +I++FG NQ N+ V++VSKV++KFVYL +GSG+A+
Sbjct: 59 MAVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQQNTHVVEEVSKVSLKFVYLAVGSGMAA 118
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQVT WM+TGERQA RIRGLYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 119 FLQVTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGE 178
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL+ATF+GGF+IAF++GWLLT+VMLS++PLLA+SG MA++I +M+SRGQ AYA
Sbjct: 179 KVGKFLQLIATFIGGFVIAFVRGWLLTVVMLSTLPLLALSGATMAVIIGRMASRGQTAYA 238
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VML++FC
Sbjct: 239 KAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGSTAGAGLGTVMLVIFC 298
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
YAL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLG+ASP +SAF AGQAAA+KMF+T
Sbjct: 299 GYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFQT 358
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKIL+DI+G+IELRDV FSYPARP E IF+GFS+ I SGTTAALVGQ
Sbjct: 359 IERKPEIDAYDPNGKILEDIQGEIELRDVDFSYPARPEELIFNGFSLHIPSGTTAALVGQ 418
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQAGEVLIDGINLKEFQL+WIR KIGLVSQEPVLF SIKDNI
Sbjct: 419 SGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNI 478
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGK+ AT EEIR A+ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILK+
Sbjct: 479 AYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKN 538
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTT+IVAHRLSTVRNAD+IAVIHRGK+VE
Sbjct: 539 PRILLLDEATSALDAESERIVQEALDRIMVNRTTIIVAHRLSTVRNADVIAVIHRGKMVE 598
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KGTH +L++DPEGAYSQLIRLQE NKE+E D SE+S+ES R SS + SL+RSISR
Sbjct: 599 KGTHIELLKDPEGAYSQLIRLQEVNKETEGNADQHNNSELSVESFRQSSQKRSLQRSISR 658
Query: 661 GSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPV 720
GSS+GNSSRHS SVSFGLP+G + +P S +E APEVP RLA LNKPEIPV
Sbjct: 659 GSSLGNSSRHSFSVSFGLPTG----VNVADPEHESSQPKEEAPEVPLSRLASLNKPEIPV 714
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
++ G++AA+ANGVI PI+G+LISSVI+TF++P E+KKDS+FWAL+++ LG SFL+ PA
Sbjct: 715 LVIGSVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFWALMFMILGLASFLIIPA 774
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
+ YFFAVAG KLIQRIR MCFEKV++MEVSWFDEPE+SSGAIGARLSADAASVRALVGDA
Sbjct: 775 RGYFFAVAGCKLIQRIRQMCFEKVVNMEVSWFDEPENSSGAIGARLSADAASVRALVGDA 834
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEE 900
L +VQN +T AGLIIAF ASWQLALIILV++PLIGV+GY QMKFMKGFSADAKM YEE
Sbjct: 835 LGLLVQNFATVLAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEE 894
Query: 901 ASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960
ASQVANDAVGSIRTVASFCAE+KVM+LYK KCE PMKTGIRQG++SG GFG SFFLLF
Sbjct: 895 ASQVANDAVGSIRTVASFCAEDKVMELYKNKCEGPMKTGIRQGLISGSGFGVSFFLLFCV 954
Query: 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII 1020
YA SFYAGARLV+ GKATFSDVF+VFF+LTM AIG+SQSSSF+ DS+KAKSA ASIF II
Sbjct: 955 YATSFYAGARLVDAGKATFSDVFRVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGII 1014
Query: 1021 DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGES 1080
D++SKIDP DESG+ L+ VKGEIEL HVSFKYPSRPD+Q+FRDL+L I +GKTVALVGES
Sbjct: 1015 DKKSKIDPGDESGSTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGES 1074
Query: 1081 GSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140
GSGKSTV++LLQRFY+PD+G ITLDG+EI++LQLKWLRQQMGLVSQEPVLFN+TIRANIA
Sbjct: 1075 GSGKSTVIALLQRFYNPDSGQITLDGIEIRELQLKWLRQQMGLVSQEPVLFNETIRANIA 1134
Query: 1141 YGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200
YGKGGDATEAEI AA+EMANAHKFI LQQGYDT+VGERG QLSGGQKQRVAIARAI+K
Sbjct: 1135 YGKGGDATEAEIIAAAEMANAHKFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKS 1194
Query: 1201 PKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVE 1260
PKILLLDEATSALDAESERVVQDALD+VM NRTTVVVAHRLSTIKNAD+IAVVKNGVIVE
Sbjct: 1195 PKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVE 1254
Query: 1261 KGKHENLINIPDGFYASLIALHSSAST 1287
KGKHE LIN+ GFYASL+ LH+SAST
Sbjct: 1255 KGKHEKLINVSGGFYASLVQLHTSAST 1281
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548261|ref|XP_002515187.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545667|gb|EEF47171.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2002 bits (5187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1291 (76%), Positives = 1137/1291 (88%), Gaps = 31/1291 (2%)
Query: 1 MNGESNSNEA-SASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTA 59
+NG ++++EA ++ +EE K SS +G D+EK K EKT SVPF+KLF+FADS D
Sbjct: 7 LNGNTSTHEAGTSKSHEEEKEKKSSTNGLPQDTEKSKGDEKTNSVPFHKLFSFADSKDVI 66
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
LMIIG+I AIGNGL LPLMT++ GD+I+ FG NQN + V VSKV+++FVYL IG+ A
Sbjct: 67 LMIIGTIAAIGNGLALPLMTIVLGDIIDAFGQNQNQ-DVVKVVSKVSLRFVYLAIGAAAA 125
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
SFL C LR V NTGEV+GRMSGDTVLIQDAMG
Sbjct: 126 SFL--PCG-------------------LRNSVCC----XNTGEVIGRMSGDTVLIQDAMG 160
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
EKVGKF+QL++TFLGGF+IAF+KGWLLT VMLSSIPLL ++GGVM+I ISKM+SRGQ AY
Sbjct: 161 EKVGKFIQLVSTFLGGFVIAFVKGWLLTFVMLSSIPLLVIAGGVMSITISKMASRGQTAY 220
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
AKAA+VVEQTIGSIRTVASFTGEKQA+SNYKKFLVTAY SGV EG+A G+GLG++ML+VF
Sbjct: 221 AKAATVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVHEGIATGVGLGVLMLVVF 280
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
CSY+L++W+GGK+ILE+GY GGQV+NV++AVL+GSMSLG+ASPC+SAF AGQAAA+KMFE
Sbjct: 281 CSYSLAIWFGGKMILEKGYTGGQVLNVIIAVLSGSMSLGQASPCMSAFAAGQAAAYKMFE 340
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
TI+R PEIDAYDT+GKIL+DIRGDIELRDVYFSYPARP EQIFSGFS+SI SGTT ALVG
Sbjct: 341 TISRMPEIDAYDTRGKILEDIRGDIELRDVYFSYPARPEEQIFSGFSLSIPSGTTTALVG 400
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
QSGSGKSTVISLIERFYDPQAGEV IDGINLKEFQL+WIR+KIGLVSQEPVLFT SI+DN
Sbjct: 401 QSGSGKSTVISLIERFYDPQAGEVRIDGINLKEFQLKWIREKIGLVSQEPVLFTASIRDN 460
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
IAYGKD ATTEEIR A ELANAAKFIDKLPQG+DT+ GEHGTQLSGGQKQRIAIARAILK
Sbjct: 461 IAYGKDGATTEEIRSAAELANAAKFIDKLPQGLDTMAGEHGTQLSGGQKQRIAIARAILK 520
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599
DPRILLLDEATSALDAESE+VVQEALDRIMVNRTTVIVAHRLST+RNAD+IAVIHRGK+V
Sbjct: 521 DPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTIRNADVIAVIHRGKMV 580
Query: 600 EKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSIS 659
EKG+HS+L+ DP+GAYSQLIRLQE NK+SEQ + ++S++S ES R SS R+SLRRSIS
Sbjct: 581 EKGSHSELLMDPDGAYSQLIRLQEVNKDSEQKPEDHKRSDLSSESFRQSSQRISLRRSIS 640
Query: 660 RGSS-IGNSSRHSISVSFGLPSGQFA-DTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE 717
RGSS +GNSSRHS SVSFGLP+G A D EP P+ E PEVP RRLAYLNKPE
Sbjct: 641 RGSSGVGNSSRHSFSVSFGLPTGINATDNPQEEPT--DSPSPENTPEVPIRRLAYLNKPE 698
Query: 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLL 777
IPV++ G IAA ANGVI PIYG+L+S VI++F++PPHEL+KD+ FWALI++ LG SF++
Sbjct: 699 IPVLIFGAIAACANGVIFPIYGILLSRVIKSFYEPPHELRKDTNFWALIFMTLGLASFVV 758
Query: 778 SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALV 837
P Q YFF VAG++LIQRIR++CFEKV+HMEV WFDEPEHSSGAIGARLSADAA+VRALV
Sbjct: 759 IPLQFYFFGVAGSRLIQRIRTICFEKVVHMEVGWFDEPEHSSGAIGARLSADAATVRALV 818
Query: 838 GDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMK 897
GD+LA++VQN+++A AGL+IAFTASWQLA IIL ++PLIGV+GY Q+KFM+GFSADAKM
Sbjct: 819 GDSLAQMVQNLASAVAGLVIAFTASWQLAFIILALIPLIGVTGYVQVKFMQGFSADAKMM 878
Query: 898 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957
YEEASQVANDAVGSIRTVASFCAEEKVMQ+YKKKCE PMKTGIRQG++SG GFGASFFLL
Sbjct: 879 YEEASQVANDAVGSIRTVASFCAEEKVMQMYKKKCEGPMKTGIRQGVISGMGFGASFFLL 938
Query: 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017
F+ YA SFYAGA+LV+ GK +FSDVF+VFF+LTM A+GISQSSS + DS+KA+SA ASIF
Sbjct: 939 FSVYATSFYAGAQLVKHGKTSFSDVFQVFFALTMAAMGISQSSSLAPDSSKARSAVASIF 998
Query: 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALV 1077
+IIDR+SKIDPSDESG +E+V+GEIEL VSF+YPSRPD+Q+FRDLNL I +GKTVALV
Sbjct: 999 SIIDRQSKIDPSDESGMTIENVRGEIELRRVSFRYPSRPDIQIFRDLNLAIHSGKTVALV 1058
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
GESGSGKSTV+SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFNDTIRA
Sbjct: 1059 GESGSGKSTVISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNDTIRA 1118
Query: 1138 NIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197
NIAYGK GDATEAE AASE+ANAHKFI SLQQGYDT+VGERG+QLSGGQKQRVAIARAI
Sbjct: 1119 NIAYGKDGDATEAETLAASELANAHKFISSLQQGYDTLVGERGVQLSGGQKQRVAIARAI 1178
Query: 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGV 1257
VK PKILLLDEATSALDAESERVVQDALDRVM NRTT+VVAHRLSTI+NAD+IAVVKNGV
Sbjct: 1179 VKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIQNADVIAVVKNGV 1238
Query: 1258 IVEKGKHENLINIPDGFYASLIALHSSASTS 1288
IVEKGKHE LINI DGFYASL++LH++AST+
Sbjct: 1239 IVEKGKHETLINIKDGFYASLVSLHTTASTA 1269
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130846|ref|XP_002320939.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861712|gb|EEE99254.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2001 bits (5185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1291 (76%), Positives = 1141/1291 (88%), Gaps = 8/1291 (0%)
Query: 2 NGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALM 61
NG+ + +EAS SKS E K S G++ + K K E+T++VPF KLF+FADS D LM
Sbjct: 8 NGDKSMDEASTSKSLEVEEKSSGGRGDQQEPVKSKGDEETKTVPFLKLFSFADSTDILLM 67
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+G+IGA+GNG P+M++LFGDL+N+FG NQNN + VD V+KV++ FVYLGIGS +A+F
Sbjct: 68 ILGTIGAVGNGASFPIMSILFGDLVNSFGQNQNNKDVVDLVTKVSLNFVYLGIGSAVAAF 127
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181
LQV CWM+TGERQA RIRG YLKTIL+QDVAFFD ETNTGEVVGRMSGDTVLIQDAMGEK
Sbjct: 128 LQVACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEK 187
Query: 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
VGKF+QL++TF+GGF++AF+KGWLL LVMLSSIPLL +SG +AI+I++M+SRGQ AYAK
Sbjct: 188 VGKFIQLVSTFIGGFIVAFVKGWLLALVMLSSIPLLVISGAGLAIIIARMASRGQTAYAK 247
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301
AA+VVEQ IGSIRTVASFTGEKQA+SNYKKFL TAY SGVQEG AG+GLG+VML+VFC+
Sbjct: 248 AATVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQEGFTAGLGLGIVMLLVFCT 307
Query: 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361
YAL++W+GGK+ILE+GY GG VVNV++AVLTGSMSLG+ASPC+SAF AGQAAA+KMFETI
Sbjct: 308 YALAIWFGGKMILEKGYTGGDVVNVIIAVLTGSMSLGQASPCMSAFAAGQAAAYKMFETI 367
Query: 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421
NRKPEID+ DT GKILDDI GD+ELRDVYF+YPARP+EQIFSGFS+ I SGTT ALVGQS
Sbjct: 368 NRKPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFSGFSLFIPSGTTTALVGQS 427
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKSTVISLIERFYDPQAGEVLIDG NLKEFQL+WIR+KIGLVSQEPVLFT SI+DNIA
Sbjct: 428 GSGKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIGLVSQEPVLFTSSIRDNIA 487
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
YGKD ATTEEIR ELANAAKFIDKLPQG+DT+VGEHGTQ+SGGQKQRIAIARAILKDP
Sbjct: 488 YGKDGATTEEIRAVAELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRIAIARAILKDP 547
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RILLLDEATSALDAESE++VQEALDRIMVNRTT+IVAHRLSTVRN D+I+VIH GKIVEK
Sbjct: 548 RILLLDEATSALDAESERIVQEALDRIMVNRTTLIVAHRLSTVRNVDLISVIHHGKIVEK 607
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661
G+HS+L++DPEGAYSQLIRLQE NKESE + KS+I+MES R SS R+SL RS+SRG
Sbjct: 608 GSHSELLKDPEGAYSQLIRLQEVNKESEHETE-DHKSDITMESFRQSSPRISLERSLSRG 666
Query: 662 SSIGNSSRHSISVSFGLPSGQFA----DTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE 717
SS G + SVS GL + F+ D A GE S + P+ RRLAYLNKPE
Sbjct: 667 SS-GAGNISPFSVSLGLHTAGFSVPDTDNAPGEVEASSHKPK--TPDGLIRRLAYLNKPE 723
Query: 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLL 777
IPV++AG IAA+ NGVI PI+G+L+S+VI+TFF+PPHEL+KDS+FWAL+++ LG SFL+
Sbjct: 724 IPVLIAGAIAAILNGVIFPIFGVLLSNVIKTFFEPPHELRKDSKFWALMFMTLGLASFLV 783
Query: 778 SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALV 837
P Q+Y F+VAG KLIQRIRS+CFEKV+HMEV WFDEPEHSSG IGARLSADAA+VRALV
Sbjct: 784 FPTQTYLFSVAGGKLIQRIRSICFEKVVHMEVGWFDEPEHSSGVIGARLSADAATVRALV 843
Query: 838 GDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMK 897
GD+LA++VQNI++A AGL+IAFTA WQLALIILV++PL+G++G Q+KFMKGFSADAKM
Sbjct: 844 GDSLAQMVQNIASATAGLVIAFTACWQLALIILVLIPLVGLNGIIQIKFMKGFSADAKMM 903
Query: 898 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957
YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCE PM+TGI+QG++ G GFG SFFLL
Sbjct: 904 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEGPMETGIKQGLICGTGFGVSFFLL 963
Query: 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017
F+ YA SFYAGA+LV+ GK TF++VF+VFF+LTM AIGISQ+SSF DS+ AK+AAASIF
Sbjct: 964 FSVYATSFYAGAQLVQHGKTTFTEVFRVFFALTMAAIGISQTSSFGPDSSSAKTAAASIF 1023
Query: 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALV 1077
+IIDR+SK+D SDESGT L+ V+GEIELHH+SFKYP+RPD+Q+FRDL+L I +GKTVALV
Sbjct: 1024 SIIDRKSKMDASDESGTKLDSVRGEIELHHISFKYPTRPDIQIFRDLSLVIHSGKTVALV 1083
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
GESGSGKSTV+SLLQRFYDP +GHITLDGV+IQ LQLKWLRQQMGLVSQEPVLFNDTIRA
Sbjct: 1084 GESGSGKSTVISLLQRFYDPHSGHITLDGVDIQSLQLKWLRQQMGLVSQEPVLFNDTIRA 1143
Query: 1138 NIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197
NIAYGK G ATE EI AASE+ANAH FI SLQQGYDT+VGERG+QLSGGQKQRVAIARAI
Sbjct: 1144 NIAYGKQGKATETEILAASELANAHNFISSLQQGYDTIVGERGVQLSGGQKQRVAIARAI 1203
Query: 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGV 1257
VK P++LLLDEATSALDAESER VQDALDRV+ NRTTVVVAHRLSTIKNAD+IAVVKNGV
Sbjct: 1204 VKSPRVLLLDEATSALDAESERTVQDALDRVVVNRTTVVVAHRLSTIKNADVIAVVKNGV 1263
Query: 1258 IVEKGKHENLINIPDGFYASLIALHSSASTS 1288
IVEKGKH+ LI+I DGFYASL+ALH +AST+
Sbjct: 1264 IVEKGKHDTLIHIKDGFYASLVALHMTASTA 1294
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442065|ref|XP_003591310.1| ABC transporter B family member [Medicago truncatula] gi|355480358|gb|AES61561.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1995 bits (5169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 989/1285 (76%), Positives = 1143/1285 (88%), Gaps = 8/1285 (0%)
Query: 4 ESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMII 63
E+N +EA+ S E+ ++S + + EK K EK E+VPF+KLFTFADS D LMI+
Sbjct: 11 ENNHDEATTS---EKNSTETSSTNVVTNGEKDKTKEKQETVPFHKLFTFADSTDILLMIV 67
Query: 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNS-ETVDKVSKVAVKFVYLGIGSGIASFL 122
G+IGAIGNGL LPLMTLLFG +I++FG NQ+N+ + V++VSKV++KFVYL +GSG+A+FL
Sbjct: 68 GTIGAIGNGLGLPLMTLLFGQMIDSFGSNQSNTTDVVEQVSKVSLKFVYLAVGSGVAAFL 127
Query: 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKV 182
QV+CWM+TGERQA RIRGLYLKTILRQDV FFD ETNTGEVVGRMSGDTVLIQDAMGEKV
Sbjct: 128 QVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKV 187
Query: 183 GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKA 242
GKFLQL+ATF+GGF+IAF KGWLLT+VM+S++P L +SG MA++I +M+S+GQ AYAKA
Sbjct: 188 GKFLQLIATFIGGFVIAFTKGWLLTVVMMSTLPFLVVSGAAMAVIIGRMASKGQTAYAKA 247
Query: 243 ASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302
A VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VM ++FC Y
Sbjct: 248 AHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVFEGTIAGAGLGTVMFVIFCGY 307
Query: 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362
AL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLG+ASP +SAF AGQAAA+KMFETI
Sbjct: 308 ALAVWFGAKMIIEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFETIK 367
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R+PEIDAYD GKIL+DI+G+IEL++VYFSYPARP E IF+GFS+ ISSGTTAALVGQSG
Sbjct: 368 RRPEIDAYDPNGKILEDIQGEIELKEVYFSYPARPEELIFNGFSLHISSGTTAALVGQSG 427
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
SGKSTVISL+ERFYDPQAGEVLIDGIN+KE QL+WIR KIGLVSQEPVLF SIKDNIAY
Sbjct: 428 SGKSTVISLVERFYDPQAGEVLIDGINMKELQLRWIRGKIGLVSQEPVLFASSIKDNIAY 487
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
GKD AT EEIR A+ELANAAKFIDKLPQG+DT+VG+HGTQLSGGQKQRIAIARAILK+PR
Sbjct: 488 GKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKNPR 547
Query: 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
ILLLDEATSALDAESE+VVQEALDRIMVNRTTV+VAHRLSTVRNADMIAVIHRGK+VEKG
Sbjct: 548 ILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKG 607
Query: 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGS 662
THS+L++DPEGAYSQLIRLQE NKESE+T D K E+S ES R SS R SL+RSISRGS
Sbjct: 608 THSELLKDPEGAYSQLIRLQEVNKESEETTDHHGKRELSAESFRQSSQRKSLQRSISRGS 667
Query: 663 SIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVIL 722
SIGNSSRHS SVSFGLP+G + +P PT+E EVP RRLA LNKPEIPV+L
Sbjct: 668 SIGNSSRHSFSVSFGLPTG----VNVADPDLEKVPTKEKEQEVPLRRLASLNKPEIPVLL 723
Query: 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQS 782
G++AA+ANGVILPI+G+LISSVI+TF++P E+KKDS+FWA++++ LG S ++ PA+
Sbjct: 724 IGSLAAIANGVILPIFGVLISSVIKTFYEPFDEMKKDSKFWAIMFMLLGLASLVVIPARG 783
Query: 783 YFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842
YFF+VAG KLIQRIR +CFEKV++MEV WFDEPE+SSGA+GARLSADAASVRALVGDAL
Sbjct: 784 YFFSVAGCKLIQRIRLLCFEKVVNMEVGWFDEPENSSGAVGARLSADAASVRALVGDALG 843
Query: 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902
+VQN+++A AGLIIAF ASWQLALIILV++PLIG++GY QMKFMKGFS DAKM YEEAS
Sbjct: 844 LLVQNLASALAGLIIAFIASWQLALIILVLIPLIGLNGYVQMKFMKGFSGDAKMMYEEAS 903
Query: 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYA 962
QVANDAVGSIRTVASFCAE+KVM+LY+KKCE PMKTGIRQG++SG GFG SFFLLF+ YA
Sbjct: 904 QVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGIISGSGFGVSFFLLFSVYA 963
Query: 963 ASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDR 1022
SFYAGARLV+ G TFSDVF+VFF+LTM AIGISQSSSF+ DS+KAKSA ASIF +ID+
Sbjct: 964 TSFYAGARLVKAGNTTFSDVFRVFFALTMAAIGISQSSSFAPDSSKAKSATASIFGMIDK 1023
Query: 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082
+SKIDPS+ESGT L+ +KGEIEL H+SFKYPSRPD+Q+FRDLNL I +GKTVALVGESGS
Sbjct: 1024 KSKIDPSEESGTTLDSIKGEIELRHISFKYPSRPDIQIFRDLNLTIHSGKTVALVGESGS 1083
Query: 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
GKSTV++LLQRFYDPD+G ITLDG+EI++LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG
Sbjct: 1084 GKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1143
Query: 1143 KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202
KGG ATEAEI AA+E+ANAH+FI LQQGYDT+VGERG QLSGGQKQRVAIARAI+K PK
Sbjct: 1144 KGGIATEAEIIAAAELANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPK 1203
Query: 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262
ILLLDEATSALDAESERVVQDALD+VM NRTTVVVAHRLSTIKNAD+IAVVKNGVIVEKG
Sbjct: 1204 ILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKG 1263
Query: 1263 KHENLINIPDGFYASLIALHSSAST 1287
+HE LIN+ DGFYASL+ LH+SA T
Sbjct: 1264 RHETLINVKDGFYASLVQLHTSAKT 1288
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548259|ref|XP_002515186.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545666|gb|EEF47170.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1990 bits (5155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1290 (75%), Positives = 1148/1290 (88%), Gaps = 6/1290 (0%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
++ + +++E S SK EE K + +G+ + EK EKT SVPF+KLF+FADS D L
Sbjct: 7 VHSDISTHETSTSKGLEEKDKSARANGHPQEMEKSNGEEKTNSVPFHKLFSFADSVDIVL 66
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MIIG+IGA+GNGL +PLMT+ GD I+ FG+NQNN + VD VSKV++KFVYLGIGS +AS
Sbjct: 67 MIIGTIGALGNGLSMPLMTIFLGDTIDAFGNNQNNQDVVDIVSKVSLKFVYLGIGSSVAS 126
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRGLYLKTILRQD+AFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 127 FLQVVCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGE 186
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL++TF+GGFLIAF+KGWLLTLVMLSS+PLL ++G M+IMI++ +S GQ AYA
Sbjct: 187 KVGKFLQLLSTFIGGFLIAFVKGWLLTLVMLSSLPLLVLAGAAMSIMIARTASHGQNAYA 246
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA+VVEQTIGSIRTVASFTGEKQA+ NY+K+LV AY SG EGL G+GLG+ + I+F
Sbjct: 247 KAATVVEQTIGSIRTVASFTGEKQAIRNYEKYLVAAYHSGAHEGLITGLGLGLFVFILFS 306
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL++WYGGK+ILE+GY GG+V+NV++ VLTGS SLG+ASPC+SAF AGQAAA+KMFET
Sbjct: 307 SYALAIWYGGKMILEKGYTGGEVINVILVVLTGSTSLGQASPCMSAFAAGQAAAYKMFET 366
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYDT GK+ DD+ G IEL++VYFSYPARP+EQIFSGFS+SI SG TAALVGQ
Sbjct: 367 IGRKPEIDAYDTSGKVSDDVHGSIELKEVYFSYPARPDEQIFSGFSLSIPSGMTAALVGQ 426
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQ+GEVLIDGINLKE+QL+WIR KIGLVSQEPVLFT SI+DNI
Sbjct: 427 SGSGKSTVISLVERFYDPQSGEVLIDGINLKEYQLKWIRGKIGLVSQEPVLFTSSIRDNI 486
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD+ATTEEIR A ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 487 AYGKDEATTEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 546
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRL+T+RNADMIAVIHRGKIVE
Sbjct: 547 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLTTIRNADMIAVIHRGKIVE 606
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KG+HS+L+ DP+GAY+QLIRLQE N++SE+ +D +++SEIS+ESL SS R SL+RSISR
Sbjct: 607 KGSHSELLADPDGAYAQLIRLQEVNEDSEEAVDERKRSEISLESL--SSQRNSLQRSISR 664
Query: 661 GSS-IGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEI 718
GSS GNS RHS+SV GL +G ++ +L EP Q + PEVP RRLAYLNKPEI
Sbjct: 665 GSSGAGNSHRHSLSVPSGLRTGLNVSENSLAEPEVSLQKKQ--TPEVPIRRLAYLNKPEI 722
Query: 719 PVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLS 778
P ++AG+I A+ +GVI P++G+LIS VIE FFKPPHEL+KDS+FWA+I++ + SFL
Sbjct: 723 PELIAGSIGAIIHGVIFPLFGILISRVIEAFFKPPHELRKDSKFWAIIFVIVAVVSFLAC 782
Query: 779 PAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVG 838
AQ YFFAVAG+KLIQRIRSMCFEKV+HMEV WFD PEHSSGAIGARLSADAASVR+LVG
Sbjct: 783 NAQLYFFAVAGSKLIQRIRSMCFEKVVHMEVGWFDVPEHSSGAIGARLSADAASVRSLVG 842
Query: 839 DALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKY 898
D+LA++VQNI++A AGL+IAFTASWQLA IILV++PL G++ Y Q++F+KGFSADAKM Y
Sbjct: 843 DSLAQMVQNIASAVAGLVIAFTASWQLAFIILVIVPLTGLNAYVQLEFLKGFSADAKMMY 902
Query: 899 EEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLF 958
EEASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE P+KTGIRQG+VSG GFG SFFLLF
Sbjct: 903 EEASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPLKTGIRQGLVSGIGFGVSFFLLF 962
Query: 959 AFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFA 1018
+ YA SFYAGA+LV+ GKATF+DVF+VFF+LT+ A+GISQSSSF+ DS+KAK+A ASIF+
Sbjct: 963 SVYATSFYAGAQLVKHGKATFTDVFQVFFALTVAAMGISQSSSFAPDSSKAKTAVASIFS 1022
Query: 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVG 1078
I+DR+SKIDPSDESG LE+V+G+IE HV+F+YPSRPD+Q+F+DL+L I +GKTVALVG
Sbjct: 1023 ILDRKSKIDPSDESGMTLENVRGDIEFQHVTFRYPSRPDIQIFQDLSLSIHSGKTVALVG 1082
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138
ESGSGKST +SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFN+TIRAN
Sbjct: 1083 ESGSGKSTAISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNETIRAN 1142
Query: 1139 IAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198
IAYGK G+A+EAEI AASE+AN+H+FI SLQQGYDT+VGERG+QLSGGQKQRVAIARAIV
Sbjct: 1143 IAYGKDGNASEAEILAASELANSHEFISSLQQGYDTLVGERGVQLSGGQKQRVAIARAIV 1202
Query: 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVI 1258
K PKILLLDEATSALDAESERVVQDALDRVM RTTVVVAHRLSTI+NAD+IAVVKNG I
Sbjct: 1203 KTPKILLLDEATSALDAESERVVQDALDRVMLKRTTVVVAHRLSTIQNADVIAVVKNGAI 1262
Query: 1259 VEKGKHENLINIPDGFYASLIALHSSASTS 1288
+EKGKHE LI+I +GFYASL+ALH SAST+
Sbjct: 1263 IEKGKHETLIHISNGFYASLVALHVSASTA 1292
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548257|ref|XP_002515185.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545665|gb|EEF47169.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1988 bits (5149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1287 (75%), Positives = 1140/1287 (88%), Gaps = 4/1287 (0%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
++ +++++E S SK EE K + +G+ + EK K EKT SVPF+KLF+FADS D L
Sbjct: 7 IHSDTSTHETSTSKGLEEKDKSARANGHPQEIEKSKGEEKTNSVPFHKLFSFADSVDIVL 66
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MIIG+IGA+GNGL +PLMT+ GD I+ FG+NQNN + VD VSKV++KFVYLGIGS +AS
Sbjct: 67 MIIGTIGALGNGLSMPLMTIFLGDTIDAFGNNQNNQDVVDVVSKVSLKFVYLGIGSSVAS 126
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRGLYLKTILRQD+AFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 127 FLQVVCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGE 186
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL++TFLGGF+IAF+KGWLLTLVMLSS+PLL ++G M+IMI+K++SRGQ AYA
Sbjct: 187 KVGKFLQLVSTFLGGFVIAFVKGWLLTLVMLSSLPLLVLAGAAMSIMIAKIASRGQNAYA 246
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA+VVEQTIGSIRTVASFTGEKQA+ NY+KFL+ AY SG EGL G+GLG+ MLI+FC
Sbjct: 247 KAATVVEQTIGSIRTVASFTGEKQAIRNYEKFLLAAYHSGAHEGLITGLGLGLFMLILFC 306
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL++W+GGK+ILE+GY GG+V+NV++AVLTGS SLG+ASP ++AF AGQAAA+KMFET
Sbjct: 307 SYALAIWFGGKMILEKGYTGGEVINVIIAVLTGSTSLGQASPSMTAFAAGQAAAYKMFET 366
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKI DDI G IELR+VYFSYPARP+EQIFSGFS+SI +G TAALVGQ
Sbjct: 367 IGRKPEIDAYDMSGKISDDIHGSIELREVYFSYPARPDEQIFSGFSLSIPNGMTAALVGQ 426
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISLIERFYDPQ GEVLIDGINLKE+QL+WIR+KIGLVSQEPVLFT SI+DNI
Sbjct: 427 SGSGKSTVISLIERFYDPQGGEVLIDGINLKEYQLKWIREKIGLVSQEPVLFTSSIRDNI 486
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD ATTEEIR A ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 487 AYGKDGATTEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 546
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRL+T+RNAD+IAVIHRG IVE
Sbjct: 547 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLTTIRNADVIAVIHRGNIVE 606
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
+G+HS+L+ P+GAYSQLIRLQE N++SE+ +D ++ EIS+ESL S R
Sbjct: 607 QGSHSELLAYPDGAYSQLIRLQEVNEDSEEAVDEHKRPEISLESLS-SQRNSLRRSISRA 665
Query: 661 GSSIGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
S +GNS RHS+SVSFGL +G ++ +L EP P PEVP RRLAYLNKPEIP
Sbjct: 666 SSRLGNSHRHSLSVSFGLTTGLNVSENSLAEP--EVSPQNNQTPEVPIRRLAYLNKPEIP 723
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
V++AG+IAA+ NGV+ P++G+LIS VIE+FFKPPHEL+KDS+FWA+I++ + S L
Sbjct: 724 VLIAGSIAAIINGVVFPLFGILISRVIESFFKPPHELRKDSKFWAIIFVIVAVVSSLACI 783
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
AQ YFFAVAG+KLIQRIRSMCF+KV+HMEV WFD PEHSSGAIGARLSADAA+VR+LVGD
Sbjct: 784 AQLYFFAVAGSKLIQRIRSMCFDKVVHMEVGWFDVPEHSSGAIGARLSADAAAVRSLVGD 843
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
+LA++VQNI++A AGLIIAFT+SWQLA IILV++PL G++ Y Q+KF++GFSADAKM YE
Sbjct: 844 SLAQMVQNIASAVAGLIIAFTSSWQLAFIILVIVPLTGLNAYVQLKFLRGFSADAKMMYE 903
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE P+KTGIRQG++SG GFG SFFLLF+
Sbjct: 904 EASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPLKTGIRQGLISGIGFGVSFFLLFS 963
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFYAGA+LV+ GK TFSDVF+VFF+LTM +GISQSSSF+ DS+KAKSA AS+F+I
Sbjct: 964 VYATSFYAGAQLVKHGKTTFSDVFQVFFALTMATMGISQSSSFAPDSSKAKSAVASVFSI 1023
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
+DR+SKIDPSDESG LE+VKGEIE HVSF+YPSRPD+Q+F+DL+L I +GKTVALVGE
Sbjct: 1024 LDRKSKIDPSDESGMTLENVKGEIEFRHVSFRYPSRPDIQIFQDLSLSIHSGKTVALVGE 1083
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKST +SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFNDTIRANI
Sbjct: 1084 SGSGKSTAISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNDTIRANI 1143
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199
AYGK G+A+EAEI AASE+AN+H+FI SLQQGYDT+VGERG+QLSGGQKQRVAIARAIVK
Sbjct: 1144 AYGKDGNASEAEILAASELANSHEFISSLQQGYDTLVGERGVQLSGGQKQRVAIARAIVK 1203
Query: 1200 DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIV 1259
PKILLLDEATSALDAESERVVQDALDRVM+NRTTVVVAHRLSTI+NAD+IAVVKNGVIV
Sbjct: 1204 TPKILLLDEATSALDAESERVVQDALDRVMQNRTTVVVAHRLSTIQNADVIAVVKNGVIV 1263
Query: 1260 EKGKHENLINIPDGFYASLIALHSSAS 1286
EKGKHE LI+I +GFYASL+ALH SAS
Sbjct: 1264 EKGKHETLISISNGFYASLVALHVSAS 1290
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1288 | ||||||
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.971 | 0.972 | 0.700 | 0.0 | |
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.973 | 0.981 | 0.693 | 0.0 | |
| TAIR|locus:2196135 | 1273 | ABCB12 "ATP-binding cassette B | 0.982 | 0.994 | 0.673 | 0.0 | |
| TAIR|locus:2141350 | 1229 | ABCB3 "ATP-binding cassette B3 | 0.459 | 0.481 | 0.721 | 0.0 | |
| TAIR|locus:2141365 | 1230 | ABCB5 "ATP-binding cassette B5 | 0.464 | 0.486 | 0.719 | 0.0 | |
| TAIR|locus:2151496 | 1248 | ABCB7 "ATP-binding cassette B7 | 0.471 | 0.486 | 0.617 | 0.0 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.454 | 0.468 | 0.488 | 2.1e-279 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.951 | 0.972 | 0.430 | 2.4e-273 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.965 | 0.966 | 0.426 | 7.6e-270 | |
| DICTYBASE|DDB_G0293438 | 1397 | abcB2 "ABC transporter B famil | 0.708 | 0.653 | 0.404 | 3e-269 |
| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4474 (1580.0 bits), Expect = 0., P = 0.
Identities = 880/1256 (70%), Positives = 1028/1256 (81%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+K ++ EKT++VPFYKLF FADS D LMI+G++G+IGNGL PLMTLLFGDLI+ FG+N
Sbjct: 35 KKDEEHEKTKTVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGEN 94
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
Q N T DKVSKVA+KFV+LGIG+ A+FLQ++ WMI+GERQA RIR LYLKTILRQD+A
Sbjct: 95 QTN--TTDKVSKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIA 152
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD +TNTGEVVGRMSGDTVLIQDAMGEKVGK +QL+ATF+GGF+IAF++GWLLTLVMLS
Sbjct: 153 FFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLS 212
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLL M+G ++AI+I+K +SRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+SNY K
Sbjct: 213 SIPLLVMAGALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKH 272
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
LVTAYK+GV EG + G+GLG + L+VFCSYAL+VWYGGKLIL++GY GGQV+N+++AVLT
Sbjct: 273 LVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLT 332
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
GSMSLG+ SPCLSAF AGQAAA+KMFETI R+P ID+Y T GK+LDDI+GDIEL+DVYF+
Sbjct: 333 GSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFT 392
Query: 393 YPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP+EQ TT ALVGQSGSGKSTV+SLIERFYDPQAG+VLIDGINLKE
Sbjct: 393 YPARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKE 452
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLFT SIKDNIAYGK+DATTEEI+ A ELANA+KF+DKLPQG+
Sbjct: 453 FQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGL 512
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
DT+VGEHGTQLSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 513 DTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 572
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
TTV+VAHRLSTVRNADMIAVIH+GKIVEKG+H++L++DPEGAYSQLIRLQE K E
Sbjct: 573 TTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAA 632
Query: 633 DGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTALG-EP 691
+ Q+ S I FG P+G + E
Sbjct: 633 EEQKMSSIESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNM-FGFPAGIDGNVVQDQEE 691
Query: 692 AGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFK 751
+QP E +V R+A LNKPEIPV++ G+I+A ANGVILPI+G+LISSVI+ FF+
Sbjct: 692 DDTTQPKTE-PKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQ 750
Query: 752 PPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811
PP +LK+D+ FWA+I++ LG S + PAQ++FFA+AG KL+QRIRSMCFEKV+HMEV W
Sbjct: 751 PPKKLKEDTSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGW 810
Query: 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871
FDEPE+SSG IGARLSADAA++R LVGD+LA+ VQN+S+ AGLIIAF A WQLA ++L
Sbjct: 811 FDEPENSSGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLA 870
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931
MLPLI ++G+ MKFMKGFSADAK Y EASQVANDAVGSIRTVASFCAE+KVM +Y KK
Sbjct: 871 MLPLIALNGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKK 930
Query: 932 CEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVFKVFFSLTM 991
CE PMK GIRQG+VS RLV+DGK TF VF+VFF+LTM
Sbjct: 931 CEGPMKNGIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTM 990
Query: 992 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
RESKIDPS ESG +L++VKG+IEL HVSFK
Sbjct: 991 AAMAISQSSSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFK 1050
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YP+RPDVQ+F+DL L IRAGKTVALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+
Sbjct: 1051 YPARPDVQIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKS 1110
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
L+LKWLRQQ GLVSQEP+LFN+TIRANIAYGKGGDA+E+EI +++E++NAH FI LQQG
Sbjct: 1111 LRLKWLRQQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQG 1170
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN 1231
YDTMVGERG+QLSGGQKQRVAIARAIVKDPK+LLLDEATSALDAESERVVQDALDRVM N
Sbjct: 1171 YDTMVGERGIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVN 1230
Query: 1232 RTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAST 1287
RTT+VVAHRLSTIKNAD+IAVVKNGVIVEKGKH+ LINI DG YASL+ LH +A++
Sbjct: 1231 RTTIVVAHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLHLTAAS 1286
|
|
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4453 (1572.6 bits), Expect = 0., P = 0.
Identities = 879/1267 (69%), Positives = 1027/1267 (81%)
Query: 23 SSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLF 82
S G E E+ K EK +VPFYKLF FADS+D LMI GSIGAIGNG+ LP MTLLF
Sbjct: 21 SPKEGEETKKEE-KSEEKANTVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLF 79
Query: 83 GDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142
GDLI++FG NQNN + VD VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR Y
Sbjct: 80 GDLIDSFGKNQNNKDIVDVVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTY 139
Query: 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202
LKTILRQD+ FFD ETNTGEVVGRMSGDTVLIQDAMGEKVGKF+QL++TF+GGF++AFIK
Sbjct: 140 LKTILRQDIGFFDVETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIK 199
Query: 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE 262
GWLLTLVML+SIPLLAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGE
Sbjct: 200 GWLLTLVMLTSIPLLAMAGAAMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGE 259
Query: 263 KQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQ 322
KQA+++YKKF+ +AYKS +Q+G + G+GLG++ + F SYAL++W+GGK+ILE+GY GG
Sbjct: 260 KQAINSYKKFITSAYKSSIQQGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGA 319
Query: 323 VVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382
V+NV++ V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+L+DIRG
Sbjct: 320 VINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRG 379
Query: 383 DIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DIEL+DV+FSYPARP+E+ TAALVG+SGSGKSTVISLIERFYDP++G
Sbjct: 380 DIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGA 439
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VLIDG+NLKEFQL+WIR KIGLVSQEPVLF+ SI +NIAYGK++AT EEI+ ATELANAA
Sbjct: 440 VLIDGVNLKEFQLKWIRSKIGLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAA 499
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
KFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQ
Sbjct: 500 KFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 559
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
EALDR+MVNRTTVIVAHRLSTVRNADMIAVIHRGK+VEKG+HS+L++D EGAYSQLIRLQ
Sbjct: 560 EALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQ 619
Query: 623 EANKESEQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XFGLPSG 681
E NK+ + SE+ GL G
Sbjct: 620 EINKDV-------KTSELSSGSSFRNSNLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLG 672
Query: 682 QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLL 741
+ A + G + ++E P+V R+A LNKPEIPV+L GT+AA NG I P++G+L
Sbjct: 673 SHSQRAGQDETGTA--SQEPLPKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGIL 730
Query: 742 ISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801
IS VIE FFKP HELK+DSRFWA+I++ALG S ++SP Q Y FAVAG KLI+RIRSMCF
Sbjct: 731 ISRVIEAFFKPAHELKRDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCF 790
Query: 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTA 861
EK +HMEV+WFDEP++SSG +GARLSADA +RALVGDAL+ VQN+++AA+GLIIAFTA
Sbjct: 791 EKAVHMEVAWFDEPQNSSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTA 850
Query: 862 SWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921
SW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAE
Sbjct: 851 SWELALIILVMLPLIGINGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAE 910
Query: 922 EKVMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSD 981
EKVMQ+YKK+CE P+K GI+QG +S RLVEDGK TF++
Sbjct: 911 EKVMQMYKKQCEGPIKDGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNN 970
Query: 982 VFKVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKG 1041
VF+VFF+LTM R+SKID SDE+GT+LE+VKG
Sbjct: 971 VFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKG 1030
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+IEL H+SF YP+RPD+Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+GH
Sbjct: 1031 DIELRHLSFTYPARPDIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGH 1090
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASEMA 1159
ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E+A
Sbjct: 1091 ITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELA 1150
Query: 1160 NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
NAHKFI S+QQGYDT+VGERG+QLSGGQKQRVAIARAIVK+PKILLLDEATSALDAESER
Sbjct: 1151 NAHKFISSIQQGYDTVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESER 1210
Query: 1220 VVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
VVQDALDRVM NRTT+VVAHRLSTIKNAD+IAVVKNGVI EKG HE LI I G YASL+
Sbjct: 1211 VVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLV 1270
Query: 1280 ALHSSAS 1286
LH +AS
Sbjct: 1271 QLHMTAS 1277
|
|
| TAIR|locus:2196135 ABCB12 "ATP-binding cassette B12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4338 (1532.1 bits), Expect = 0., P = 0.
Identities = 858/1274 (67%), Positives = 1012/1274 (79%)
Query: 19 VGKDSSMSGNE--HDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLP 76
+ +D + G+ H+ K EK ++VP YKLF FADS D LMI GS+GAIGNG+CLP
Sbjct: 1 MNRDGAGEGDSVSHEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLP 60
Query: 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQAT 136
LMTLLFGDLI++FG NQNN + VD VSKV +KFVYLG+G A+FLQV CWMITGERQA
Sbjct: 61 LMTLLFGDLIDSFGKNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITGERQAA 120
Query: 137 RIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196
+IR YLKTILRQD+ FFD ETNTGEVVGRMSGDTV IQDAMGEKVGKF+QL++TF+GGF
Sbjct: 121 KIRSNYLKTILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGF 180
Query: 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTV 256
+AF KGWLLTLVML+SIP LAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTV
Sbjct: 181 ALAFAKGWLLTLVMLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTV 240
Query: 257 ASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE 316
ASFTGEKQA+++YKK++ +AYKS +Q+G + G+GLG+++ + F SYAL++W+GGK+ILE+
Sbjct: 241 ASFTGEKQAINSYKKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGKMILEK 300
Query: 317 GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKI 376
GY GG V+NV++ V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+
Sbjct: 301 GYTGGSVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKV 360
Query: 377 LDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFY 436
L DIRGDIEL+DV+FSYPARP+E+ TAALVG+SGSGKSTVI+LIERFY
Sbjct: 361 LGDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFY 420
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DP+AGEVLIDGINLKEFQL+WIR KIGLV QEPVLF+ SI +NIAYGK++AT +EI+VAT
Sbjct: 421 DPKAGEVLIDGINLKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQEIKVAT 480
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
ELANAAKFI+ LPQG+DT VGEHGTQLSGGQKQRIAIARAILKDPR+LLLDEATSALD E
Sbjct: 481 ELANAAKFINNLPQGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTE 540
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE+VVQEALDR+MVNRTTV+VAHRLSTVRNADMIAVIH GK+VEKG+HS+L++D GAYS
Sbjct: 541 SERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYS 600
Query: 617 QLIRLQEANKESE-QTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 675
QLIR QE NK + + D S
Sbjct: 601 QLIRCQEINKGHDAKPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHHSLNVLGL 660
Query: 676 F-GLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVI 734
F GL G + E G + ++E +V R+A LNKPEIPV+L GT+ A NG I
Sbjct: 661 FAGLDLGSGSQRVGQEETGTT--SQEPLRKVSLTRIAALNKPEIPVLLLGTVVAAINGAI 718
Query: 735 LPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794
P++G+LIS VIE FFKP +LKKDSRFWA+I++ALG S ++SP+Q Y FAVAG KLI+
Sbjct: 719 FPLFGILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKLIR 778
Query: 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAG 854
RI+SMCFEK +HMEVSWFDEPE+SSG +GARLS DAA +RALVGDAL+ VQN ++AA+G
Sbjct: 779 RIQSMCFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAASG 838
Query: 855 LIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRT 914
LIIAFTASW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRT
Sbjct: 839 LIIAFTASWELALIILVMLPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSIRT 898
Query: 915 VASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVED 974
VASFCAEEKVMQ+Y K+CE P+K G++QG +S RLVED
Sbjct: 899 VASFCAEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLVED 958
Query: 975 GKATFSDVFKVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGT 1034
GK TF DVF+VFF+LTM R+SKID SDE+GT
Sbjct: 959 GKTTFIDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGT 1018
Query: 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094
+LE+VKG+IEL H+SF YP+RP +Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRF
Sbjct: 1019 VLENVKGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRF 1078
Query: 1095 YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEI 1152
YDPD+G ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI
Sbjct: 1079 YDPDSGQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEI 1138
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
AA+E+ANAHKFI S+QQGYDT+VGE+G+QLSGGQKQRVAIARAIVK+PKILLLDEATSA
Sbjct: 1139 IAAAELANAHKFISSIQQGYDTVVGEKGIQLSGGQKQRVAIARAIVKEPKILLLDEATSA 1198
Query: 1213 LDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPD 1272
LDAESER+VQDALDRV+ NRTTVVVAHRLSTIKNAD+IA+VKNGVI E G HE LI I
Sbjct: 1199 LDAESERLVQDALDRVIVNRTTVVVAHRLSTIKNADVIAIVKNGVIAENGTHETLIKIDG 1258
Query: 1273 GFYASLIALHSSAS 1286
G YASL+ LH +AS
Sbjct: 1259 GVYASLVQLHMTAS 1272
|
|
| TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2231 (790.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 427/592 (72%), Positives = 518/592 (87%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPFYKLF+F+DS D LMI+GSIGAIGNG+ PLMTLLFGDLI++ G NQ+N +
Sbjct: 3 EKTKTVPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDI 62
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
V+ VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+ FFD ET
Sbjct: 63 VEIVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVET 122
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
+TGEVVGRMSGDTVLI +AMGEKVGKF+QL+ATF+GGF++AF+KGWLLTLVML SIPLLA
Sbjct: 123 STGEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLA 182
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
++G M I++++ SSR Q AYAKA++VVEQT+GSIRTVASFTGEKQAM +Y++F+ AY+
Sbjct: 183 IAGAAMPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYR 242
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+ V++G + G+GLG+V + FCSYAL++W+GG++IL++GY GG+VVNVMV V+ SMSLG
Sbjct: 243 ASVKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLG 302
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ +PCL+AF AG+AAA+KMFETI RKP IDA+D GK+L+DIRG+IELRDV FSYPARP
Sbjct: 303 QTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPM 362
Query: 399 EQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
E+ TAALVG+SGSGKS+VISLIERFYDP +G VLIDG+NLKEFQL+WI
Sbjct: 363 EEVFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWI 422
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLF+ SI +NI YGK++AT EEI+ A +LANAA FIDKLP+G++TLVGE
Sbjct: 423 RGKIGLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGE 482
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+M++RTTVIVA
Sbjct: 483 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVA 542
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
HRLSTVRNADMIAVIHRGKIVE+G+HS+L++D EGAY+QLIRLQ+ KE ++
Sbjct: 543 HRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPKR 594
|
|
| TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2225 (788.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 430/598 (71%), Positives = 515/598 (86%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+KG T++VPFYKLF F+DS D LMI+GSIGAI NG+C PLMTLLFG+LI+ G N
Sbjct: 2 KKGNLEANTKTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPN 61
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
QNN E V++VSKV + VYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+
Sbjct: 62 QNNEEIVERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIG 121
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD E TGEVVGRMSGDTVLI DAMGEKVGKF+QL++TF+GGF+IAF++GWLLTLVML+
Sbjct: 122 FFDVEMTTGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLT 181
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLLAMSG +AI++++ SS+ Q AYAKA++VVEQT+GSIRTVASFTGEKQAMS+YK+
Sbjct: 182 SIPLLAMSGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKEL 241
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
+ AYKS V++G G+GLG++ L+ F +YAL W+GG++IL +GY GG V+NVMV V++
Sbjct: 242 INLAYKSNVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVS 301
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
S++LG+ASPCL+AF AG+AAA+KMFETI R+P ID +D GK+L+DIRG+IELRDV FS
Sbjct: 302 SSIALGQASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFS 361
Query: 393 YPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP E+ TT ALVG+SGSGKSTVISLIERFYDP +G+VLIDG++LKE
Sbjct: 362 YPARPKEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKE 421
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLF+ SI +NI YGK+ AT EEI+ A++LANAAKFIDKLP G+
Sbjct: 422 FQLKWIRGKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGL 481
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 482 ETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 541
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
TTVIVAHRLSTVRNAD+IAVIHRGKIVE+G+HS+L++D EGAYSQL+RLQE NKES++
Sbjct: 542 TTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESKR 599
|
|
| TAIR|locus:2151496 ABCB7 "ATP-binding cassette B7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2009 (712.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 379/614 (61%), Positives = 498/614 (81%)
Query: 32 SEKGKQTEK----TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLIN 87
+EK K+ + + + FYKLFTFAD D LM+IG++ A+ NGL P M++L G LIN
Sbjct: 2 AEKAKKKKNGGGGNQRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLIN 61
Query: 88 TFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTIL 147
FG + ++ +VSKVAVKF+YL +G+ SFLQV+CWM+TGERQ+TRIR LYLKTIL
Sbjct: 62 VFGFSDHD-HVFKEVSKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTIL 120
Query: 148 RQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207
RQD+ FFD ETNTGEV+GRMSGDT+LIQD+MGEKVGKF QL+++F+GGF +AFI G LT
Sbjct: 121 RQDIGFFDTETNTGEVIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLT 180
Query: 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMS 267
L +L +PL+ +GG M ++SK + R Q AY +A +VV+Q +GSIRTV +FTGEKQ+M
Sbjct: 181 LALLPCVPLIVGTGGAMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMG 240
Query: 268 NYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVM 327
Y+K L AYKS V++GL +G+G+G++M++V+C+Y ++WYG + I+E+GY GGQV+NV+
Sbjct: 241 KYEKKLEIAYKSMVKQGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVI 300
Query: 328 VAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELR 387
++LTG M+LG+ P L++F AG AAA+KMFETI RKP+IDAYD G++L++I+GDIELR
Sbjct: 301 TSILTGGMALGQTLPSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELR 360
Query: 388 DVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447
DVYF YPARP+ Q T ALVGQSGSGKSTVISLIERFYDP++GEVLIDG
Sbjct: 361 DVYFRYPARPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDG 420
Query: 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
I+LK+FQ++WIR KIGLVSQEP+LF +I++NI YGK DA+ +EIR A +LANA+ FIDK
Sbjct: 421 IDLKKFQVKWIRSKIGLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDK 480
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
LPQG++T+VGEHGTQLSGGQKQRIAIARAILK+P+ILLLDEATSALDAESE++VQ+AL +
Sbjct: 481 LPQGLETMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 540
Query: 568 IMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKE 627
+M++RTTV+VAHRL+T+R ADMIAV+ +GK++EKGTH ++++DPEG YSQL+RLQE +K+
Sbjct: 541 LMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKK 600
Query: 628 SEQTIDGQ-RKSEI 640
E+ ID + K E+
Sbjct: 601 -EEAIDKEPEKCEM 613
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1476 (524.6 bits), Expect = 2.1e-279, Sum P(2) = 2.1e-279
Identities = 287/588 (48%), Positives = 400/588 (68%)
Query: 37 QTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNN- 95
+ +K +S+PF+KLF+FAD D LM +GS+GAI +G +P+ LLFG ++N FG NQ +
Sbjct: 17 EKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDL 76
Query: 96 SETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFD 155
+ V +VS+ ++ FVYLG+ +S+ ++ CWM +GERQ +R YL+ +L+QDV FFD
Sbjct: 77 HQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFD 136
Query: 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIP 215
+ TG++V +S DT+L+QDA+ EKVG F+ ++TFL G ++ F+ W L L+ ++ IP
Sbjct: 137 TDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIP 196
Query: 216 LLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVT 275
+A +GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A++ Y +
Sbjct: 197 GIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQY 256
Query: 276 AYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSM 335
K G + G+A G+GLG I S+AL WY G I +GG+ + + + G M
Sbjct: 257 TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGM 316
Query: 336 SLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395
SLG++ L AF G+AA +K+ E IN++P I GK LD + G+IE +DV FSYP+
Sbjct: 317 SLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPS 376
Query: 396 RPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
RP+ T A+VG SGSGKSTV+SLIERFYDP +G++L+DG+ +K QL
Sbjct: 377 RPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQL 436
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
+++R++IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP+G DT
Sbjct: 437 KFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQ 496
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575
VGE G QLSGGQKQRIAIARA+LKDP+ILLLDEATSALDA SE +VQEALDR+MV RTTV
Sbjct: 497 VGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTV 556
Query: 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
+VAHRL T+RN D IAVI +G++VE GTH +L+ GAY+ LIR QE
Sbjct: 557 VVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQE 603
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2628 (930.2 bits), Expect = 2.4e-273, P = 2.4e-273
Identities = 535/1243 (43%), Positives = 775/1243 (62%)
Query: 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETV-D 100
+SV F++LF FAD D LM GS GA+ +G +P+ LLFG+LIN FG NQ++ + D
Sbjct: 27 QSVAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLRRMTD 86
Query: 101 KVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNT 160
+VSK ++ FVYLG+ +S+L++ CWM TGERQ +R YL+ +LRQDV FFD + T
Sbjct: 87 EVSKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDART 146
Query: 161 GEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220
G+VV +S DT+L+QDA+GEKVG F+ ++TFL G ++ F+ W L L+ ++ IP +A +
Sbjct: 147 GDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFA 206
Query: 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280
GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A+++Y + + K G
Sbjct: 207 GGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLG 266
Query: 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEA 340
+ G+A G+G+G I S+AL WY G I +GG+ + + + G +SLG++
Sbjct: 267 YKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQS 326
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQ 400
L AF G+ A +K+ E I ++P I G+ LD++ G+IE ++V FSYP+RP+
Sbjct: 327 FSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPDVM 386
Query: 401 XXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
TAA+VG SGSGKSTV++LIERFYDP G+VL+D +++K QL+W+R
Sbjct: 387 IFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLRD 446
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
+IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP G +T VGE G
Sbjct: 447 QIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGERG 506
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
QLSGGQKQRIAIARA+LK+P+ILLLDEATSALDA SE +VQEALDR+MV RTTV+VAHR
Sbjct: 507 LQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHR 566
Query: 581 LSTVRNADMIAVIHRGKIVEKGTHSKLV-EDPEGAYSQLIRLQEANKESEQTIDGQRKSE 639
LST+R DMIAVI +G++VE GTH +L+ + GAY+ LIR QE + + RKS
Sbjct: 567 LSTIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFRGPSTRKSR 626
Query: 640 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTALGEPAGPSQPTE 699
+ +G AD + + +
Sbjct: 627 ------------SSRLSNSLSTRSLSLRSGSLRNLSYSYSTG--ADGRIEMVSNADNDRK 672
Query: 700 EVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETF-FKPPHELKK 758
AP+ +L LN PE P + G I ++ +G I P + +++S++IE F F+ P+ +++
Sbjct: 673 YPAPKGYFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMER 732
Query: 759 DSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHS 818
+R + IY+ G + + Q YFF++ G L R+R M ++ +V WFD+ E++
Sbjct: 733 KTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENN 792
Query: 819 SGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
S + ARLS DAA V++ + + ++ I+QN+++ ++ F W++A++ILV PL+ +
Sbjct: 793 SSLVAARLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVL 852
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
+ + Q MKGF+ D + + S +A + V +IRTVA+F A++KV+ L+ + P
Sbjct: 853 ANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMH 912
Query: 939 GIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVFKVFFSLTMTXXXXXX 998
+R+ +S LV +TFS V KVF L +T
Sbjct: 913 SLRRSQISGALFGLSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAE 972
Query: 999 XXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDV 1058
++IDP + +E V+G+I+ HV F YPSRPDV
Sbjct: 973 TVSLAPEIVRGGESIRSVFAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPSRPDV 1032
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
VF+D +L+IRAG++ ALVG SGSGKSTV++L++RFYDP AG + +DG +I++L ++ LR
Sbjct: 1033 MVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRSLR 1092
Query: 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGE 1178
++GLV QEPVLF +I NIAYGK G ATE E+ A+++AN H F+ +L +GY T VGE
Sbjct: 1093 LKIGLVQQEPVLFATSIFENIAYGKDG-ATEEEVIEAAKVANMHGFVSALPEGYKTPVGE 1151
Query: 1179 RGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVA 1238
RG+QLSGGQKQR+AIARA++KDP +LLLDEATSALDAESE V+Q+AL+R+MK RT V+VA
Sbjct: 1152 RGVQLSGGQKQRIAIARAVLKDPAVLLLDEATSALDAESECVLQEALERIMKGRTAVLVA 1211
Query: 1239 HRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281
HRLSTI+ D IAVV++G +VE+G H L++ PDG Y+ L+ L
Sbjct: 1212 HRLSTIRGVDSIAVVQDGRVVEQGSHGELVSRPDGAYSRLLQL 1254
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2595 (918.5 bits), Expect = 7.6e-270, P = 7.6e-270
Identities = 539/1264 (42%), Positives = 779/1264 (61%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
E+ K+ E V F +LF FAD D LM IGS+GA +G LPL F DL+N+FG N
Sbjct: 17 EEPKKAE-IRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSN 75
Query: 93 QNNSETV-DKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDV 151
NN E + ++V K A+ F+ +G +S+ +++CWM +GERQ T++R YL+ L QD+
Sbjct: 76 SNNVEKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDI 135
Query: 152 AFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVML 211
FFD E T +VV ++ D V++QDA+ EK+G F+ MATF+ GF++ F W L LV L
Sbjct: 136 QFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTL 195
Query: 212 SSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKK 271
+ +PL+A+ GG+ +SK+S++ Q + ++A ++VEQT+ IR V +F GE +A Y
Sbjct: 196 AVVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSS 255
Query: 272 FLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVL 331
L A K G + GLA G+GLG +VFC YAL +WYGG L+ NGG + M AV+
Sbjct: 256 ALKIAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVM 315
Query: 332 TGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYF 391
G ++LG+++P ++AF + AA K+F I+ KP I+ G LD + G +EL++V F
Sbjct: 316 IGGLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDF 375
Query: 392 SYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
SYP+RP+ + T ALVG SGSGKSTV+SLIERFYDP +G+VL+DG +LK
Sbjct: 376 SYPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLK 435
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
+L+W+R++IGLVSQEP LF SIK+NI G+ DA EI A +ANA FI KLP G
Sbjct: 436 TLKLRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDG 495
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
DT VGE G QLSGGQKQRIAIARA+LK+P ILLLDEATSALD+ESEK+VQEALDR M+
Sbjct: 496 FDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIG 555
Query: 572 RTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE-GAYSQLIRLQEANKESEQ 630
RTT+I+AHRLST+R AD++AV+ +G + E GTH +L E G Y++LI++QEA E+
Sbjct: 556 RTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAM 615
Query: 631 TIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTALGE 690
+ + ++ S F L ++
Sbjct: 616 S-NARKSSARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSL--------SIDA 666
Query: 691 PAGPSQPTEEVAPEVPTR---RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIE 747
+ P+ E++A + RLA +N PE L G++ ++ G + + ++S+V+
Sbjct: 667 SSYPNYRNEKLAFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLS 726
Query: 748 TFFKPPHE--LKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVI 805
++ P HE +K+ ++ L+ + L + + + + Q F+ + G L +R+R V+
Sbjct: 727 VYYNPDHEYMIKQIDKYCYLL-IGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVL 785
Query: 806 HMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865
E++WFD+ E+ S I ARL+ DA +VR+ +GD ++ IVQN + F W+L
Sbjct: 786 KNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRL 845
Query: 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVM 925
AL+++ + P++ + Q FM GFS D + + + +Q+A +A+ ++RTVA+F +E K++
Sbjct: 846 ALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIV 905
Query: 926 QLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVFKV 985
+LY E P+K +G ++ LV+ G + FS +V
Sbjct: 906 RLYTANLEPPLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRV 965
Query: 986 FFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILED-VKGEIE 1044
F L ++ R+++I+P D T + D ++GE+E
Sbjct: 966 FMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVE 1025
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
L H+ F YPSRPD+Q+FRDL+L+ RAGKT+ALVG SG GKS+V+SL+QRFY+P +G + +
Sbjct: 1026 LKHIDFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMI 1085
Query: 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
DG +I+K LK +R+ + +V QEP LF TI NIAYG ATEAEI A+ +A+AHKF
Sbjct: 1086 DGKDIRKYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHEC-ATEAEIIQAATLASAHKF 1144
Query: 1165 ICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDA 1224
I +L +GY T VGERG+QLSGGQKQR+AIARA+V+ +I+LLDEATSALDAESER VQ+A
Sbjct: 1145 ISALPEGYKTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEA 1204
Query: 1225 LDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI-NIPDGFYASLIALHS 1283
LD+ RT++VVAHRLSTI+NA +IAV+ +G + E+G H +L+ N PDG YA +I L
Sbjct: 1205 LDQACSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQR 1264
Query: 1284 SAST 1287
T
Sbjct: 1265 FTHT 1268
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| DICTYBASE|DDB_G0293438 abcB2 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1862 (660.5 bits), Expect = 3.0e-269, Sum P(2) = 3.0e-269
Identities = 379/937 (40%), Positives = 584/937 (62%)
Query: 23 SSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLF 82
S+ + D + K+ E VPF+ LF FA D LMIIG+IGA+ NG+ +P ++++F
Sbjct: 102 STTQSKKLDEGEKKEGEVGPQVPFFSLFRFAKPFDILLMIIGTIGALANGVSMPAISIVF 161
Query: 83 GDLINTFG-DN--QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIR 139
G L+N+F +N N + V+ V+ A+ F+Y+G G + S+++V WM+ GERQA R R
Sbjct: 162 GRLMNSFSPENLADPNFDLVETVTSNAMYFIYIGCGVFVCSYVEVAFWMLAGERQAVRCR 221
Query: 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199
YLK IL+Q++ ++D T + E+ R+S DT+L Q+A+GEK+G FL +TF+ GF++
Sbjct: 222 KAYLKAILKQEIGWYD-VTKSSELSTRISSDTLLFQEAIGEKIGNFLHHTSTFICGFIVG 280
Query: 200 FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASF 259
F+ GW LTLV+ + PL+A +G M M++ ++ +GQ AYAKA V E+ IGSIRTV++F
Sbjct: 281 FVNGWQLTLVIFALTPLIAAAGAFMTKMMADLTKKGQDAYAKAGGVAEEKIGSIRTVSTF 340
Query: 260 TGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYN 319
+GE + Y + L A G ++G+ GIG+G+V L++F +Y+LS WYGGKLI++ +N
Sbjct: 341 SGEPFEVKRYTERLKEALDIGTKKGIMNGIGIGLVFLVLFGTYSLSFWYGGKLIVDRKWN 400
Query: 320 --------GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYD 371
GG V+ V +V+ G+M+LG+ASP +++F G+ AAFK++E ++R +ID +
Sbjct: 401 PVPDRPWQGGDVLTVFFSVIMGAMALGQASPNVASFANGRGAAFKIYEVVDRNSKIDPFS 460
Query: 372 TKGKILDD-IRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVIS 430
T+G+ +++ ++G+IE R++ FSYP+RP+ + TT ALVG SG GKS+VI
Sbjct: 461 TEGRSIEETVQGNIEYRNIGFSYPSRPDVKIFNNFNLTIKKGTTVALVGDSGGGKSSVIG 520
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
L+ERFYDP GEV +DG N+KE + +R+ IGLVSQEPVLF SI +NI YG ++AT +
Sbjct: 521 LLERFYDPDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFANSIAENIRYGNENATMD 580
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+I A + ANA FI LP+G DT VGE G Q+SGGQKQRIAIARA++KDP+ILLLDEAT
Sbjct: 581 QIIEACKTANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPKILLLDEAT 640
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
SALD+++E +VQ++++++M+ RTT+++AHRLST+++AD IAV+ G IVE GTH +L
Sbjct: 641 SALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIGTHPELYA- 699
Query: 611 PEGAYSQLIRLQEANKESEQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670
G Y+QL+ Q+ + D ++K +
Sbjct: 700 LNGVYTQLVNRQQKGGDDG---DKKKKKKSKESSKDESNNNIGPSSISIDKSIQSIGADS 756
Query: 671 XXXXXFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMA 730
GL + D + +P E+ VP R+ L++ + P L G + A
Sbjct: 757 LETSTIGLVNDN--DNKKKKKK-EKKPQEK---SVPIGRILKLSRGDWPHFLIGLVGATL 810
Query: 731 NGVILPIYGLLISSVIETFFKPP-HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789
NG I+P++ ++ S ++ F + EL + SR AL ++ L + L + Q Y F G
Sbjct: 811 NGAIMPVFSIIFSEILGIFQEQDTDELTRRSRNMALWFILLAVVAALANFIQIYCFTFIG 870
Query: 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIS 849
KL +R + FE ++ ++ WFD E+S+G + A L+ +A V+ + L ++QNI
Sbjct: 871 EKLTFNLRRLSFESIMRQDIGWFDLTENSTGRLTANLATEATLVQGMTSQRLGLLIQNIV 930
Query: 850 TAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAV 909
T AGL+IAF + W+L L++L +P+IG +G +M F +GFS K Y E QVA++A+
Sbjct: 931 TIVAGLVIAFVSGWKLTLVVLACVPVIGFAGKVEMDFFQGFSQKGKEAYAECGQVASEAI 990
Query: 910 GSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946
G IRTV+SF E K+++ +++ + P++ R+ VS
Sbjct: 991 GGIRTVSSFTCENKILEKFRQCLQKPIQMSFRKSNVS 1027
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3579 | 0.9681 | 0.9155 | yes | no |
| Q9M1Q9 | AB21B_ARATH | No assigned EC number | 0.7509 | 0.9588 | 0.9529 | no | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.4148 | 0.9479 | 0.9568 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.4129 | 0.9472 | 0.9531 | yes | no |
| O80725 | AB4B_ARATH | No assigned EC number | 0.7556 | 0.9619 | 0.9634 | yes | no |
| P21447 | MDR1A_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.4150 | 0.9518 | 0.9608 | yes | no |
| Q9SYI2 | AB3B_ARATH | No assigned EC number | 0.7025 | 0.9487 | 0.9943 | no | no |
| Q9FWX8 | AB12B_ARATH | No assigned EC number | 0.7244 | 0.9689 | 0.9803 | no | no |
| Q54BT3 | ABCB2_DICDI | No assigned EC number | 0.4384 | 0.9673 | 0.8919 | yes | no |
| Q9FWX7 | AB11B_ARATH | No assigned EC number | 0.7474 | 0.9557 | 0.9632 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pm.C_LG_XIV0249 | multidrug/pheromone exporter, MDR family, ABC transporter family (1294 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1288 | |||
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-160 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-137 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-137 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-136 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-132 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-131 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-130 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-126 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-124 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-119 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-114 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-111 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-110 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-109 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-109 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-107 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-103 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-102 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-96 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-95 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-95 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-93 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-88 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-86 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-83 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-82 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-81 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-81 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-81 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-79 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-79 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-78 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-77 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-76 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-75 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-75 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-71 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-69 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-69 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-68 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-67 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-66 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-65 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-64 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-64 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-64 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-64 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-63 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-62 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-62 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-61 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-60 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-60 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-59 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-59 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-58 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-58 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-58 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-57 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-56 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-55 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-53 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-49 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-48 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-48 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-48 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-48 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-47 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-45 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-45 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-44 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-44 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-44 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-43 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-43 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-43 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-43 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-43 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-43 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-42 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-42 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-42 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-42 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-42 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-42 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-42 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-41 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-41 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-41 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 6e-41 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-41 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-40 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-40 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-40 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-40 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-39 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-39 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-38 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-38 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-38 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-38 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-38 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-38 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-38 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-38 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-38 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-38 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-38 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-38 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-38 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-37 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-37 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-37 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-37 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-37 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-37 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-37 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-36 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-36 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-36 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-36 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-36 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-36 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-36 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-36 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-36 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-35 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-35 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-35 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-35 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-35 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-35 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-35 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-34 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-34 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-34 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-34 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-34 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-34 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-33 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-33 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-33 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-33 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-33 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-33 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-33 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-33 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-33 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-33 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-33 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-33 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-33 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-33 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-32 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 4e-32 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-32 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-31 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-31 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-31 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-31 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-31 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-31 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-31 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-31 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-30 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-30 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-30 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-30 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-30 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-30 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-30 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-30 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-30 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-30 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-30 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-30 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-29 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-29 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-29 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-29 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-29 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-29 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-29 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-29 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-29 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-29 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-29 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 8e-29 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 9e-29 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-29 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-28 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-28 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-28 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-28 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-28 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-28 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-28 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-28 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-28 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-28 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-28 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 8e-28 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-28 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-28 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-27 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-27 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-27 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-27 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-27 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-27 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-27 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-27 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-27 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-27 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-27 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-27 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-27 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-27 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-27 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-27 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-26 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-26 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-26 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-26 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-26 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-26 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-26 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-26 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-26 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-26 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-26 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 9e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-25 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-25 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-25 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-25 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-25 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-25 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-25 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-25 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-25 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-25 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-25 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-25 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-25 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-25 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-25 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-25 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-25 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-25 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-25 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-25 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-25 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-25 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-25 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-25 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-25 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-25 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-25 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-25 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-25 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-24 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-24 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-24 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-24 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-24 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-24 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-24 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-24 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-24 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-24 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-24 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-24 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-24 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-24 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-24 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-24 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-24 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-24 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-24 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-24 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-24 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-24 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-24 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-24 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-24 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-23 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-23 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-23 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-23 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-23 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-23 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-23 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-23 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-23 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-23 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-23 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-23 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-23 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-23 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-23 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-23 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-22 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-22 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-22 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-22 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-22 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-22 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-22 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-22 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-22 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-22 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-22 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-22 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-22 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-22 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-22 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-22 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 6e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-22 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-22 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-22 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-22 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-22 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-21 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-21 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-21 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-21 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-21 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-21 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-21 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-21 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-21 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-21 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-21 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-21 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 7e-21 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 8e-21 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-21 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-21 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-20 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-20 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-20 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-20 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-20 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-20 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-20 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-20 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-20 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-20 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-20 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-20 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-20 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-20 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-20 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-20 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 9e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-19 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-19 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-19 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-19 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-19 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-19 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-19 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-19 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-19 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-19 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-19 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-19 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-19 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-19 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-19 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-18 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-18 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-18 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-18 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-18 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-18 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-18 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-18 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-18 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-18 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-18 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-18 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-18 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-18 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-17 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-17 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-17 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-17 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-17 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-17 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-17 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-17 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-16 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-16 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-16 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-16 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-16 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-16 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-16 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-16 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-16 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-16 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-16 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-16 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-16 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-15 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-15 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-15 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-15 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-15 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-15 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-15 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 5e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-15 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-15 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 8e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-15 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-14 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-14 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-14 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-14 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-14 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-14 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 8e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 8e-14 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-13 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-13 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-13 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-13 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-13 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-13 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-13 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-12 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-12 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-12 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 9e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-11 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-11 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-11 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 8e-11 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-10 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 7e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 7e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-09 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-08 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-08 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-08 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 1e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-08 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-08 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 6e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 5e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 6e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 7e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 5e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 6e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 6e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.003 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.004 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 517 bits (1333), Expect = e-160
Identities = 412/1502 (27%), Positives = 694/1502 (46%), Gaps = 274/1502 (18%)
Query: 6 NSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGS 65
N++ ++EV K+ + G +K KT+ +PF+ F ++ L+ +
Sbjct: 11 NNSGGGNLSIKDEVEKELNKKGTFELYKK----IKTQKIPFFLPFKCLPASHRKLLGVSF 66
Query: 66 IGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125
+ A +G LP +FG ++ N N E V+ + V +GI I SF+
Sbjct: 67 VCATISGGTLPFFVSVFGVIMK----NMNLGENVNDI---IFSLVLIGIFQFILSFISSF 119
Query: 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVG-K 184
C + + ++ +LK++ QD F DN N G +++ D + + +G K
Sbjct: 120 CMDVVTTKILKTLKLEFLKSVFYQDGQFHDN--NPGS---KLTSDLDFYLEQVNAGIGTK 174
Query: 185 FLQLM---ATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
F+ + + FLG ++ + K LTL + PL+ + G V+ K++ + Y
Sbjct: 175 FITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICG-VICNKKVKINKKTSLLYNN 233
Query: 242 -AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
S++E+ + IRTV S+ GEK + + K ++ + +GM+ +
Sbjct: 234 NTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILA 293
Query: 301 SYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQA 352
SYA WYG ++I+ + ++GG V+++++ VL L P ++ +
Sbjct: 294 SYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353
Query: 353 AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSG 412
A ++E INRKP ++ D GK L DI+ I+ ++V F Y R + +I+ + +++ G
Sbjct: 354 ATNSLYEIINRKPLVENND-DGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG 411
Query: 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVL 471
T A VG+SG GKST++ LIER YDP G+++I D NLK+ L+W R KIG+VSQ+P+L
Sbjct: 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLL 471
Query: 472 FTGSIKDNIAY------------------------GKDDATTEEIRVA------------ 495
F+ SIK+NI Y K+ + + A
Sbjct: 472 FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDS 531
Query: 496 ---------------TELANAAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
+E+ + +K F+ LP +TLVG + ++LSGGQKQRI+IA
Sbjct: 532 NELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAV 592
RAI+++P+IL+LDEATS+LD +SE +VQ+ ++ + NR T+I+AHRLST+R A+ I V
Sbjct: 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFV 651
Query: 593 I---HRGK--------------------------------------------IVEKGTHS 605
+ RG I+E+GTH
Sbjct: 652 LSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHD 711
Query: 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIG 665
L+++ G Y +I Q+ + + D + S+ M+S + G+S
Sbjct: 712 ALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSD--MKSSAYKDSERGYDPDEMNGNSKH 769
Query: 666 NSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTR-RLAYLN----KPEIPV 720
+ S S + ++ G + + P+ P R+ Y K ++ +
Sbjct: 770 ENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTI 829
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
I + A G + P++ LL + + T F + L+ +S ++L L + F+
Sbjct: 830 IALSILVA---GGLYPVFALLYAKYVSTLFDFAN-LEANSNKYSLYILVIAIAMFISETL 885
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
++Y+ V G K+ + ++ FE +++ E+S+FD+ +H+ G + A ++ D
Sbjct: 886 KNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRD----------- 934
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVM----LPLI-GVSGYTQMKFMKGFSADAK 895
V + T I+ FT L L+ +VM P++ V T FM+ F+ A+
Sbjct: 935 ----VHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRAR 990
Query: 896 MK-------------------------YEEASQVANDAVGSIRTVASFCAEEKVMQLYKK 930
+ +++ S + +A ++ TV + E+ L +K
Sbjct: 991 LTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEK 1050
Query: 931 KCEAPMKTGIRQGMVSGGGFG----ASFFL-LFAFYAASFYAGARLVEDGKATFSDVFKV 985
+ K R+ +V+ +G A F+ FA++ SF L+ G D K
Sbjct: 1051 AIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSF-----LIRRGTILVDDFMKS 1105
Query: 986 FFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE---DVKGE 1042
F+ T + S DS AK + + +I R+S ID D G ++ D+KG+
Sbjct: 1106 LFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGK 1165
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ V+F+Y SRP+V +++DL + KT A+VGE+GSGKSTV+SLL RFYD H
Sbjct: 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHH 1225
Query: 1103 TL---------------DGVEIQKLQLKWLRQ----QMGLVSQEPVLFND---------- 1133
+ G E Q + +K + + + G ++ +F +
Sbjct: 1226 IVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285
Query: 1134 -------------------------TIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
+I NI +GK DAT +++ A + A +FI SL
Sbjct: 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESL 1344
Query: 1169 QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ----DA 1224
YDT VG G LSGGQKQR+AIARA++++PKILLLDEATS+LD+ SE++++ D
Sbjct: 1345 PNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404
Query: 1225 LDRVMKNRTTVVVAHRLSTIKNADMIAVVKN----GVIVE-KGKHENLINIPDGFYASLI 1279
D+ ++T + +AHR+++IK +D I V N G V+ G HE L+++ DG Y +
Sbjct: 1405 KDKA--DKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYV 1462
Query: 1280 AL 1281
L
Sbjct: 1463 KL 1464
|
Length = 1466 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 429 bits (1106), Expect = e-137
Identities = 208/567 (36%), Positives = 323/567 (56%), Gaps = 17/567 (2%)
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
+L + + + ++ + LLI +I+ EL + L+ L L +L
Sbjct: 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE----LLLLLLLLALLGGVLRAL 71
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
QSY + G K++ +R FEK++ + +S+FD+ SG + +RL+ D +V LV
Sbjct: 72 QSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTV 129
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG-VSGYTQMKFMKGFSADAKMKYE 899
L + +I L++ F+ SW+LALI+L++LPL+ V K K +
Sbjct: 130 LVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVRE-ALG 188
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
E + +++ IR + +F AE++ ++ +++ E + +R + L
Sbjct: 189 ELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAASIFA 1018
G LV G T + F + + I Q S +A +AA +F
Sbjct: 249 GTVLVLALGGFLVLSGSLTVGALA-AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE 307
Query: 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVG 1078
++D E +++ + L+D G IE +VSF YP V +D++ I G+ VA+VG
Sbjct: 308 LLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIVG 362
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138
SGSGKST++ LL R YDP +G I +DG++I+ + L LR+++G+VSQ+P+LF+ TIR N
Sbjct: 363 PSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422
Query: 1139 IAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198
IA G+ DAT+ EI+ A ++ANAH+FI +L GYDT+VGERG+ LSGGQ+QR+AIARA++
Sbjct: 423 IALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481
Query: 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVI 1258
++P IL+LDEATSALD E+E ++QDAL +++K RTT+++AHRLSTIKNAD I V+ NG I
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRI 541
Query: 1259 VEKGKHENLINIPDGFYASLIALHSSA 1285
VE+G HE L+ G YA L A
Sbjct: 542 VERGTHEELLAK-GGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 416 bits (1073), Expect = e-137
Identities = 158/237 (66%), Positives = 195/237 (82%), Gaps = 2/237 (0%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VSF+YPSRPDV + + L+L I GKTVALVG SG GKSTVVSLL+RFYDP +G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
LDGV+I+ L L+WLR Q+GLVSQEPVLF+ TI NI YGK DAT+ E++ A++ AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIH 119
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
FI SL GYDT+VGERG QLSGGQKQR+AIARA++++PKILLLDEATSALDAESE++VQ
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 1223 DALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
+ALDR MK RTT+V+AHRLSTI+NAD+IAV++NG +VE+G H+ L+ G YA L+
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 414 bits (1067), Expect = e-136
Identities = 148/239 (61%), Positives = 193/239 (80%), Gaps = 1/239 (0%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V F YP+RP+ I G S++I G T ALVG SG GKSTV+SL+ERFYDP +GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG+++++ L+W+R +IGLVSQEPVLF G+I +NI YGK DAT EE+ A + AN
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
FI LP G DTLVGE G+QLSGGQKQRIAIARA+L++P+ILLLDEATSALDAESEK+VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
ALDR M RTT+++AHRLST+RNAD+IAV+ G++VE+GTH +L+ +G Y++L++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 416 bits (1071), Expect = e-132
Identities = 196/546 (35%), Positives = 310/546 (56%), Gaps = 2/546 (0%)
Query: 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQAT 136
TL + D+ + ++ +++ + + + + + + GER
Sbjct: 32 AATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVA 91
Query: 137 RIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196
IR ++ +FFD +GEVV R++ DT L+Q +G + L+ +GG
Sbjct: 92 DIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGL 150
Query: 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTV 256
++ FI LT ++L ++PL+ + + + K+S Q A A S +T+G+IRTV
Sbjct: 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTV 210
Query: 257 ASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE 316
+F E S + + AY++ Q + +V+++VF + +W G ++
Sbjct: 211 QAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAG 270
Query: 317 GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKI 376
+ G + + + + S+G S AA ++ E + +P+I A +
Sbjct: 271 KMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTL 330
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
+RG+IE V F+YPARP++ G ++++ G T ALVG SG+GKST+ L+ RFY
Sbjct: 331 PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DPQ+G +L+DG++L++ +R ++ LV Q+PVLF S+ +NI YG+ DAT EE+ A
Sbjct: 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA 450
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
A+A +FI LP+G DT +GE G LSGGQ+QRIAIARAILKD ILLLDEATSALDAE
Sbjct: 451 RAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE++VQ+AL+ +M RTT+I+AHRL+TV AD I V+ +G+IV +GTH++L+ G Y+
Sbjct: 511 SEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYA 569
Query: 617 QLIRLQ 622
+L RLQ
Sbjct: 570 RLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 415 bits (1069), Expect = e-131
Identities = 191/580 (32%), Positives = 324/580 (55%), Gaps = 16/580 (2%)
Query: 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVS 103
+L + L I+ + + L LPL L G +I+ + ++
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPL---LIGRIIDAL------LADLGELL 52
Query: 104 KVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEV 163
++ + + L + G+ LQ G++ +R + +LR ++FFD +G++
Sbjct: 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDL 111
Query: 164 VGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223
+ R++ D + + + + + +G ++ F W L L++L +PLLA+ +
Sbjct: 112 ISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSL 171
Query: 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283
+A K+S R + A + + + +++ IR + +F E + + +++ ++ ++
Sbjct: 172 LARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231
Query: 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343
+ +++L+ L + GG L+L G + ++ +L + +
Sbjct: 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEV 291
Query: 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFS 403
+S AAA ++FE ++ +PE++ K G IE +V FSYP + +
Sbjct: 292 VSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTI---GSIEFENVSFSYP--GKKPVLK 346
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
S SI G A+VG SGSGKST+I L+ R YDP +GE+LIDGI++++ L +RK+IG
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
+VSQ+P+LF+G+I++NIA G+ DAT EEI A +LANA +FI LP G DT+VGE G L
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583
SGGQ+QR+AIARA+L++P IL+LDEATSALD E+E ++Q+AL +++ RTT+I+AHRLST
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526
Query: 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
++NAD I V+ G+IVE+GTH +L+ G Y++L + Q
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-130
Identities = 208/520 (40%), Positives = 305/520 (58%), Gaps = 30/520 (5%)
Query: 112 LGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDT 171
L I S +++ L+ + T R RIR +++LRQD+ FFD E TGE+ R+S DT
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD-ENKTGELTSRLSSDT 268
Query: 172 VLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKM 231
+ ++ V L+ + LG LT+V L ++PL+ ++ V +
Sbjct: 269 QTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLL 328
Query: 232 SSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA-AG-- 288
S Q A AKA V E+ + +RTV SF E+ S +K+ L + ++ LA AG
Sbjct: 329 SEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388
Query: 289 -----IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343
+G+ + +L++ +YGG+L+L + G +V+ ++ LGEA
Sbjct: 389 WTTSVLGMLIQVLVL--------YYGGQLVLTGKVSSGNLVSFLLY----QEQLGEAVRV 436
Query: 344 LSAFGAG--QA--AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNE 399
LS +G QA A+ K+FE ++RKP I T ++ G IE +DV FSYP RP+
Sbjct: 437 LSYVYSGMMQAVGASEKVFEYLDRKPNIP--LTGTLAPLNLEGLIEFQDVSFSYPNRPDV 494
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
+ G + ++ G ALVG SGSGKSTV +L++ Y P G+VL+DG+ L ++ ++
Sbjct: 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519
+++ LV QEPVLF+GS+++NIAYG D EEI A + ANA FI + P G DT VGE
Sbjct: 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
G+QLSGGQKQRIAIARA+++ PR+L+LDEATSALDAE E+++QE R +RT +++AH
Sbjct: 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAH 672
Query: 580 RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
RLSTV AD I V+ +G +VE GTH +L+ED G Y L+
Sbjct: 673 RLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 401 bits (1031), Expect = e-126
Identities = 196/522 (37%), Positives = 297/522 (56%), Gaps = 14/522 (2%)
Query: 765 LIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGA 824
L + L + A+ Y G +++ IR F +I + S+FD+ + SG + +
Sbjct: 62 AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVS 119
Query: 825 RLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQM 884
RL+ D +++++G +L+ ++N GLI+ F S +L ++L+ +PL+ +
Sbjct: 120 RLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFG 179
Query: 885 KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG----- 939
+ ++ S +++ + +A A + +G+IRTV +F E+ + E +
Sbjct: 180 RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239
Query: 940 IRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQS 999
R + + L+F + GA V GK + + + F M A I
Sbjct: 240 TRALLTAI-----VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTL 294
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQ 1059
S + +A AA + ++ E I T+ ++GEIE V+F YP+RPD
Sbjct: 295 SEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQP 354
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
LNL +R G+TVALVG SG+GKST+ LL RFYDP +G I LDGV++++L LR
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGER 1179
+M LV Q+PVLF ++ NI YG+ DAT+ E++AA+ A+AH+FI +L +GYDT +GER
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGER 473
Query: 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAH 1239
G+ LSGGQ+QR+AIARAI+KD ILLLDEATSALDAESE++VQ AL+ +MK RTT+++AH
Sbjct: 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAH 533
Query: 1240 RLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281
RL+T+ AD I V+ G IV +G H LI G YA L L
Sbjct: 534 RLATVLKADRIVVMDQGRIVAQGTHAELIA-KGGLYARLARL 574
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 395 bits (1016), Expect = e-124
Identities = 204/584 (34%), Positives = 312/584 (53%), Gaps = 36/584 (6%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW---- 763
R +Y+ +P ++ +A + L+ +++ F + S W
Sbjct: 4 RLWSYV-RPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFG----GRDRSVLWWVPL 58
Query: 764 ALIYLAL--GAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGA 821
+I LA+ G SF+ +Y + NK+++ IR FEK++ + VS+FD +G
Sbjct: 59 VVIGLAVLRGICSFV----STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGT 112
Query: 822 IGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY 881
+ +R++ D+ V + DA +V+ T I+ SWQL LI++VMLP++ +
Sbjct: 113 LLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMR 172
Query: 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR 941
K ++ S + + + + VA + + R V F + + + + ++
Sbjct: 173 RVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 942 QGMVSGGG-------FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
M S G AS L + A F A A G T D ++
Sbjct: 233 --MTSAGSISSPITQLIASLALAVVLFIALFQAQA-----GSLTAGDFTAFITAMIALIR 285
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
+ ++ ++ + +AA S+F ++D D +E +G++E +V+F+YP
Sbjct: 286 PLKSLTNVNAPMQRGLAAAESLFTLLDSP---PEKDTGTRAIERARGDVEFRNVTFRYPG 342
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
R D ++L I G+TVALVG SGSGKST+V+L+ RFY+PD+G I LDG ++ L
Sbjct: 343 R-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDT 1174
LR+Q+ LVSQ+ VLFNDTI NIAYG+ A AEI+ A A A F+ L G DT
Sbjct: 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 1175 MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTT 1234
+GE G+ LSGGQ+QR+AIARA++KD IL+LDEATSALD ESER+VQ AL+R+M+ RTT
Sbjct: 462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTT 521
Query: 1235 VVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
+V+AHRLSTI+ AD I V+ +G IVE+G H L+ +G YA L
Sbjct: 522 LVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA-RNGLYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 386 bits (993), Expect = e-119
Identities = 204/589 (34%), Positives = 318/589 (53%), Gaps = 28/589 (4%)
Query: 699 EEVAPEVPTRRLAYLNKPEIPVILAG----TIAAMANGVILPIY-GLLISSVIETFFKPP 753
E A RL L+ + P +++ T++++ + +P Y G +I ++ K P
Sbjct: 143 SETAD--LLFRLLGLSGRDWPWLISAFVFLTLSSLG-EMFIPFYTGRVIDTLGGD--KGP 197
Query: 754 HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFD 813
L F L L S + + + F ++ RIR F ++ ++ +FD
Sbjct: 198 PALASAIFFMCL----LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD 253
Query: 814 EPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873
E + +G + +RLS+D ++ + + +++N+ L S +L ++ L+ L
Sbjct: 254 E--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311
Query: 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCE 933
PL+ ++ K + S + + +A+QVA +A+ +RTV SF AEE +K+ E
Sbjct: 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALE 371
Query: 934 APMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTA 993
++ R+ + G + L Y G +LV GK + ++ V F L
Sbjct: 372 ETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL--VSFLLYQEQ 429
Query: 994 IG--ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL-EDVKGEIELHHVSF 1050
+G + S S +A A+ +F +DR+ I + GT+ +++G IE VSF
Sbjct: 430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---GTLAPLNLEGLIEFQDVSF 486
Query: 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110
YP+RPDV V + L + G+ VALVG SGSGKSTV +LLQ Y P G + LDGV +
Sbjct: 487 SYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV 546
Query: 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
+ +L +Q+ LV QEPVLF+ ++R NIAYG D + EI AA++ ANAH FI
Sbjct: 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPN 605
Query: 1171 GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK 1230
GYDT VGE+G QLSGGQKQR+AIARA+V+ P++L+LDEATSALDAE E+++Q+ R
Sbjct: 606 GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRA 663
Query: 1231 NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
+RT +++AHRLST++ AD I V+K G +VE G H+ L+ Y L+
Sbjct: 664 SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG-CYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 355 bits (913), Expect = e-114
Identities = 140/236 (59%), Positives = 184/236 (77%), Gaps = 3/236 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E +V+F+YP V RD++L I AG+TVALVG SGSGKST+V+L+ RFYD D+G I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG +++ L LR+Q+GLVSQ+ LFNDT+ NIAYG+ AT E++ A+ ANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAH 118
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
+FI L +GYDT++GERG++LSGGQ+QR+AIARA++KDP IL+LDEATSALD ESER+VQ
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 1223 DALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
AL+R+MKNRTT V+AHRLSTI+NAD I V+++G IVE+G HE L+ G YA L
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 364 bits (937), Expect = e-111
Identities = 173/529 (32%), Positives = 283/529 (53%), Gaps = 25/529 (4%)
Query: 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVV 164
+A+ + + + L+ G+R + G + + +LR +++F+ + GE++
Sbjct: 196 LAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEII 254
Query: 165 GRMSGDTVLIQDAM-GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223
R+ + I++ + G + + L+ + ++ W LTL++L++IPL + +
Sbjct: 255 SRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY-SWKLTLIVLAAIPLNVLITLI 312
Query: 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFL---VTAYKSG 280
++ + + + A+ S + +TI I TV + E + S + L V
Sbjct: 313 FQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372
Query: 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEA 340
+ L ++ + S L +W+G L+LE GQ+V +L G
Sbjct: 373 EKLALILNTIKSLLQQL---SSVLILWFGAILVLEGELTLGQLV--AFNMLAGYFI---- 423
Query: 341 SPCLSAFGAGQA-----AAFKMFETI-NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYP 394
SP A + I + PE + D L ++G+IE +V F Y
Sbjct: 424 SPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG-DKTLIHLPKLQGEIEFENVSFRYG 482
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+ S+ I G A+VG+SGSGKST++ L+ Y PQ G +L+DG++L +
Sbjct: 483 PDDPPVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID 541
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
L +R+++G V Q+P LF+GSI++NIA G +AT EEI A +LA A +FI+ LP G DT
Sbjct: 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT 601
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
VGE G LSGGQ+QR+A+ARA+L P+ILLLDEATSALD E+E ++ + L +I+ RT
Sbjct: 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTV 661
Query: 575 VIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
+I+AHRLST+R+AD I V+ +GKIVE+G+H +L+ G Y++L + QE
Sbjct: 662 IIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 357 bits (918), Expect = e-110
Identities = 198/514 (38%), Positives = 289/514 (56%), Gaps = 41/514 (7%)
Query: 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841
SY + K++ +R F ++ M VS+FD+ S+G + +R++ D+ V + AL
Sbjct: 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGAL 143
Query: 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEA 901
+V+ ++ I+ F SWQL+LI++V+ P++ ++ K + S + + +
Sbjct: 144 ITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQV 203
Query: 902 SQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM--VSGGG-------FGA 952
+ A + + V F ++V K M+ +QGM VS A
Sbjct: 204 TTSAEQMLKGHKEVLIF-GGQEVETKRFDKVSNRMR---QQGMKMVSASSISDPIIQLIA 259
Query: 953 SFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFF-------SLTMTAIGISQSSSFSSD 1005
S L F YAASF + + G T + VF SLT + ++
Sbjct: 260 SLALAFVLYAASFPSVMDTLTAG--TITVVFSSMIALMRPLKSLT----------NVNAQ 307
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQVFRDL 1064
+ +A ++FAI+D E + D G +E KG+IE +V+F YP + +V R++
Sbjct: 308 FQRGMAACQTLFAILDLEQEKD----EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNI 362
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124
N KI AGKTVALVG SGSGKST+ +LL RFYD D G I LDG +++ L LR Q+ LV
Sbjct: 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422
Query: 1125 SQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184
SQ LFNDTI NIAY + + +I+ A+ MA A FI + G DT++GE G+ LS
Sbjct: 423 SQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTI 1244
GGQ+QR+AIARA+++D IL+LDEATSALD ESER +Q ALD + KNRT++V+AHRLSTI
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 1245 KNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
+ AD I VV++G IVE+G H L+ +G YA L
Sbjct: 543 EKADEILVVEDGEIVERGTHAELLA-QNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 341 bits (878), Expect = e-109
Identities = 128/235 (54%), Positives = 175/235 (74%), Gaps = 2/235 (0%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E ++V F YP + S+ I +G T ALVG SGSGKST+++LI RFYD +G +
Sbjct: 1 VEFKNVTFRYPGDGPP-VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG +++++ L +R++IGLVSQ+ LF ++ +NIAYG+ AT EE+ A ANA +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
FI +LP+G DT++GE G +LSGGQ+QRIAIARA+LKDP IL+LDEATSALD ESE++VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
AL+R+M NRTT ++AHRLST+ NAD I V+ GKIVE+GTH +L+ G Y++L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 359 bits (924), Expect = e-109
Identities = 176/520 (33%), Positives = 275/520 (52%), Gaps = 11/520 (2%)
Query: 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
A+ L LL ++Y A G +L + F ++ + +S+F + S G I
Sbjct: 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGEII 254
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883
+R+ + +R + ++ ++ ++ A L + F SW+L LI+L +PL +
Sbjct: 255 SRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIF 313
Query: 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
++ + + E + + I TV + AE + + + + G +
Sbjct: 314 QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 944 -MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSS 1001
+ S + GA LV +G+ T + F L I I++ S
Sbjct: 374 KLALILNTIKSLLQQL-SSVLILWFGAILVLEGELTLGQLV-AFNMLAGYFISPITRLSQ 431
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVF 1061
+D +AK A + I+D + D++ L ++GEIE +VSF+Y +
Sbjct: 432 LWTDFQQAKVALERLGDILDTPPE-QEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVL- 489
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
DL+L+I G+ VA+VG SGSGKST++ LL Y P G I LDGV++ + L LR+Q+
Sbjct: 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549
Query: 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGL 1181
G V Q+P LF+ +IR NIA G +AT+ EI A+++A AH+FI +L GYDT VGE G
Sbjct: 550 GYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608
Query: 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRL 1241
LSGGQ+QR+A+ARA++ PKILLLDEATSALD E+E ++ L ++++ RT +++AHRL
Sbjct: 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668
Query: 1242 STIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281
STI++AD I V+ G IVE+G HE L+ G YA L
Sbjct: 669 STIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 350 bits (901), Expect = e-107
Identities = 188/566 (33%), Positives = 303/566 (53%), Gaps = 13/566 (2%)
Query: 59 ALMIIGSIGAIGNGLCLPLMTLLFGDLIN-TFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117
A +++ + I + L L++ FG + V + + L + G
Sbjct: 14 AGLVLAGVAMILVAATESTLAALLKPLLDDGFG-----GRDRSVLWWVPLVVIGLAVLRG 68
Query: 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
I SF+ + IR + +L V+FFD + TG ++ R++ D+ + A
Sbjct: 69 ICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASA 127
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
+ ++ T +G F++ W LTL+++ +P+L++ ++ + ++S Q
Sbjct: 128 ATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQN 187
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
+ + +V E+T+ R V F G+ + + ++ A I + LI
Sbjct: 188 SMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI 247
Query: 298 VFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKM 357
+ A+ ++ G + A++ L + + G AAA +
Sbjct: 248 ASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESL 307
Query: 358 FETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAAL 417
F ++ PE D T + ++ RGD+E R+V F YP R S+ I G T AL
Sbjct: 308 FTLLDSPPEKD---TGTRAIERARGDVEFRNVTFRYPGRDRP-ALDSISLVIEPGETVAL 363
Query: 418 VGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477
VG+SGSGKST+++LI RFY+P +G++L+DG +L ++ L +R+++ LVSQ+ VLF +I
Sbjct: 364 VGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423
Query: 478 DNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
+NIAYG+ + A EI A A A F+DKLP G+DT +GE+G LSGGQ+QR+AIARA
Sbjct: 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596
+LKD IL+LDEATSALD ESE++VQ AL+R+M RTT+++AHRLST+ AD I V+ G
Sbjct: 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDG 543
Query: 597 KIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+IVE+GTH++L+ G Y+QL +Q
Sbjct: 544 RIVERGTHNELL-ARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 326 bits (838), Expect = e-103
Identities = 132/236 (55%), Positives = 169/236 (71%), Gaps = 4/236 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+F Y P V +D++ I AGK VA+VG SGSGKST++ LL RFYD +G I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG +I+++ L LR+ +G+V Q+ VLFNDTI NI YG+ DAT+ E+ A++ A H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIH 117
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
I GYDT+VGERGL+LSGG+KQRVAIARAI+K+P ILLLDEATSALD +ER +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1223 DALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
AL V K RTT+V+AHRLSTI NAD I V+K+G IVE+G HE L+ G YA +
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 335 bits (862), Expect = e-102
Identities = 174/496 (35%), Positives = 268/496 (54%), Gaps = 43/496 (8%)
Query: 801 FEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI---I 857
FE++I + ++W + S A+ L AL G L + ++++T A ++ +
Sbjct: 96 FERIIQLPLAWHSQ-RGSGRALHTLLRG----TDALFGLWLEFMREHLATLVALVVLLPL 150
Query: 858 AFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVAS 917
A +W+L+L+++V+ + + M+ K A + Y + +DA+G++ V S
Sbjct: 151 ALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQS 210
Query: 918 FC---AEEKVMQLYKKKC-EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE 973
+ AE + ++ A M + S AS + A GA LV+
Sbjct: 211 YNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAI----LVLGAALVQ 266
Query: 974 DGKATFSDVFKVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAA----------SIFAIIDR 1022
G+ +V F IG + Q +F N+ AA ++ + D
Sbjct: 267 KGQLRVGEVV-AFVGFATLLIGRLDQVVAFI---NQVFMAAPKLEEFFEVEDAVPDVRDP 322
Query: 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082
ID L VKG +E VSF Y + Q D++ + + G+TVA+VG +G+
Sbjct: 323 PGAID--------LGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGA 372
Query: 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
GKST+++LLQR +DP +G I +DG +I+ + LR+ + +V Q+ LFN +I NI G
Sbjct: 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 1143 KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202
+ DAT+ E++AA+E A AH FI GYDT+VGERG QLSGG++QR+AIARA++KDP
Sbjct: 433 RP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491
Query: 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262
IL+LDEATSALD E+E V+ ALD +MK RTT ++AHRLST++NAD I V NG +VE G
Sbjct: 492 ILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 1263 KHENLINIPDGFYASL 1278
+ L+ G +A+L
Sbjct: 552 SFDELVAR-GGRFAAL 566
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 320 bits (821), Expect = 3e-96
Identities = 194/572 (33%), Positives = 321/572 (56%), Gaps = 29/572 (5%)
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLI-NTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ + I N M L L+ + FG + S V K + V + L I GI
Sbjct: 27 LIVAGVALILNAASDTFMLSLLKPLLDDGFG-KADRS--VLKWMPLVV--IGLMILRGIT 81
Query: 120 SFLQVTC--WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
SF+ C W ++G+ T R L+ ++ V+FFD ++ TG ++ R++ D+ + +
Sbjct: 82 SFISSYCISW-VSGKVVMTMRRRLF-GHMMGMPVSFFDKQS-TGTLLSRITYDSEQVASS 138
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
+ ++ A+ +G F++ F W L+L+++ P+++++ V++ +S Q
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQN 198
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
+ + EQ + + V F G++ + K + G++ A+ I ++ LI
Sbjct: 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLI 258
Query: 298 VFCSYALS-VWYGGKL--ILEEGYNGGQVV--NVMVAVLTGSMSLGEASPCLSAFGAGQA 352
S AL+ V Y +++ G V + M+A++ SL + + F G A
Sbjct: 259 A--SLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVN---AQFQRGMA 313
Query: 353 AAFKMFETINRKPEIDAYDTKGKI-LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISS 411
A +F ++ + E D +GK ++ +GDIE R+V F+YP + + I +
Sbjct: 314 ACQTLFAILDLEQEKD----EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPA 368
Query: 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471
G T ALVG+SGSGKST+ +L+ RFYD GE+L+DG +L+++ L +R ++ LVSQ L
Sbjct: 369 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428
Query: 472 FTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F +I +NIAY + + + E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QR
Sbjct: 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI 590
IAIARA+L+D IL+LDEATSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I
Sbjct: 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEI 548
Query: 591 AVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
V+ G+IVE+GTH++L+ G Y+QL ++Q
Sbjct: 549 LVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 2e-95
Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 3/239 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V F+Y P + S +I +G A+VG SGSGKST++ L+ RFYD +G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG +++E L +R+ IG+V Q+ VLF +I NI YG+ DAT EE+ A + A
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
I + P G DT+VGE G +LSGG+KQR+AIARAILK+P ILLLDEATSALD +E+ +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
AL + RTT+++AHRLST+ NAD I V+ G+IVE+GTH +L+ G Y+++ + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 303 bits (779), Expect = 5e-95
Identities = 113/228 (49%), Positives = 169/228 (74%), Gaps = 2/228 (0%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G+IE +V FSY + + + SI G T A+VG +G+GK+T+I+L+ RFYDPQ G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
++LIDGI++++ + +R IG+V Q+ LF+G+I +NI G+ +AT EE+ A + A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI KLP G DT++GE+G LS G++Q +AIARA+L+DP+IL+LDEATS +D E+EK++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
QEAL+++M RT++I+AHRLST++NAD I V+ GKI+E+GTH +L+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 298 bits (766), Expect = 3e-93
Identities = 112/228 (49%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
GEIE +V+F Y V +D+N I+ G+TVA+VG +G+GK+T+++LL RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
I +DG++I+ + K LR +G+V Q+ LF+ TI NI G+ +AT+ E+ A++ A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAG 117
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
AH FI L GYDT++GE G LS G++Q +AIARA+++DPKIL+LDEATS +D E+E++
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 1221 VQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI 1268
+Q+AL+++MK RT++++AHRLSTIKNAD I V+ +G I+E+G H+ L+
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 3e-88
Identities = 127/264 (48%), Positives = 172/264 (65%), Gaps = 7/264 (2%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
L ++G +E DV FSY Q S G T A+VG +G+GKST+I+L++R +
Sbjct: 328 LGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DPQ+G +LIDG +++ +R+ I +V Q+ LF SI+DNI G+ DAT EE+R A
Sbjct: 386 DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAA 445
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E A A FI++ P G DT+VGE G QLSGG++QR+AIARA+LKDP IL+LDEATSALD E
Sbjct: 446 ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+E V+ ALD +M RTT I+AHRLSTVRNAD I V G++VE G+ +LV G ++
Sbjct: 506 TEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV-ARGGRFA 564
Query: 617 QLIR----LQEANKESEQTIDGQR 636
L+R LQE + + +G
Sbjct: 565 ALLRAQGMLQEDERRKQPAAEGAN 588
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 290 bits (745), Expect = 1e-86
Identities = 173/458 (37%), Positives = 257/458 (56%), Gaps = 31/458 (6%)
Query: 833 VRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSA 892
+R ++ + L +V+ A +I+ W AL LV + L + + F
Sbjct: 56 LRWILFNILPTLVEISLVA---VILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRR 112
Query: 893 DAKMKYEEASQVANDAVGSIRTVASFCAEE-------KVMQLYKKKCEAPMKTGIRQGMV 945
+A+ A D++ + TV F EE ++ Y+K A +K + ++
Sbjct: 113 LMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEK---AAIKVHVSLLVL 169
Query: 946 SGGGFGASFFLLFAFY-AASFYAGARLVEDGKATFSDVFKV---FFSLTMTAIGISQSSS 1001
+ FG + +F+ A VE+G+ T D+ V F L++ + S
Sbjct: 170 N---FGQT--AIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYR 224
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY-PSRPDVQV 1060
+ +A + +F ++D E+++ + ++ + G + +VSF Y P RP +
Sbjct: 225 ---EIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP---I 278
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
++ I GKTVA+VGESG+GKST++ LL RFYD ++G IT+DG +I+ + + LR+
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERG 1180
+G+V Q+ VLFNDTI NI YG DAT E+ AA+E A H FI SL +GYDT VGERG
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYG-RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397
Query: 1181 LQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHR 1240
L+LSGG+KQRVAIAR I+K+P IL+LDEATSALD +E+ +Q AL V RTT+V+AHR
Sbjct: 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHR 457
Query: 1241 LSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
LSTI +AD I V+ NG IVE+G HE L+ G YA +
Sbjct: 458 LSTIIDADEIIVLDNGRIVERGTHEELLA-AGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 270 bits (691), Expect = 9e-83
Identities = 115/240 (47%), Positives = 164/240 (68%), Gaps = 5/240 (2%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I HV F+Y +PD + +++L+I+ G+ V +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
+ +DG ++ WLR+Q+G+V QE VLFN +IR NIA G + E + A+++A A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSME-RVIEAAKLAGA 117
Query: 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVV 1221
H FI L +GYDT+VGE+G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ESE +
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 1222 QDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281
+ + RT +++AHRLST+KNAD I V++ G IVE+G H+ L+ +G YA L L
Sbjct: 178 MRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQL 236
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 9e-82
Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 44/214 (20%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VSF YP RP V +D++L I+ G+ VA+VG SGSGKST++ LL R YDP +G I
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DGV+++ L L+ LR+ + V Q+P LF+ TIR NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
LSGGQ+QR+AIARA+++DP IL+LDEATSALD E+E ++
Sbjct: 97 --------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136
Query: 1223 DALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNG 1256
+AL + K +T +V+AHRLSTI++AD I V+ +G
Sbjct: 137 EALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 2e-81
Identities = 115/221 (52%), Positives = 158/221 (71%), Gaps = 1/221 (0%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
+KG ++ +V+F YP+RPD V +D++ + G+ ALVG SGSGKSTVV+LL+ FY P
Sbjct: 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
G + LDG I + + K+L ++ LV QEPVLF +++ NIAYG + E ++ A++
Sbjct: 67 QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFE-CVKEAAQ 125
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
A+AH FI L GYDT VGE+G QLSGGQKQRVAIARA++++P++L+LDEATSALDAES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 1218 ERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVI 1258
E+ VQ AL + RT +V+AHRLST++ AD I V+ G I
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 3e-81
Identities = 111/221 (50%), Positives = 159/221 (71%)
Query: 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
D ++G ++ ++V F+YP RP+ + S ++ G ALVG SGSGKSTV++L+E FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 438 PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
PQ G+VL+DG + +++ +++ K+ LV QEPVLF S++DNIAYG + E ++ A +
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A+A FI +L G DT VGE G+QLSGGQKQR+AIARA++++P++L+LDEATSALDAES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
E+ VQ+AL RT +++AHRLSTV AD I V+ G+I
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 7e-81
Identities = 156/441 (35%), Positives = 236/441 (53%), Gaps = 52/441 (11%)
Query: 206 LTLVMLSSIPLLAM-SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264
LT V++ S+ A+ S V I+ ++ + + + A + +VE G I T+ + E Q
Sbjct: 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTG-IETIKATATEPQ 338
Query: 265 AMSNYKKFL---VTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGG 321
+ + + L V A G AG + ++ + F A+ +W+G L
Sbjct: 339 FQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTF---AILLWFGAHL--------- 386
Query: 322 QVVNVMVAVLTGSMSLGEASPCLSAFG--AGQ--------AAAFKMFE----TINRKPEI 367
V+ G++S G+ L AF AG+ A ++ F+ + R +I
Sbjct: 387 --------VIGGALSPGQ----LVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDI 434
Query: 368 -----DAYDTKGKILDDIRGDIELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQS 421
+ L ++RG I ++ F Y P P ++ S ++ I G +VG S
Sbjct: 435 LNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPS 492
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKST+ L++R Y PQ G+VL+DG++L W+R+++G+V QE VLF+ SI+DNIA
Sbjct: 493 GSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
A E + A +LA A FI +LPQG +T VGE G LSGGQ+QRIAIARA++ +P
Sbjct: 553 LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RIL+ DEATSALD ESE ++ + I RT +I+AHRLSTVR D I V+ +G+I E
Sbjct: 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
Query: 602 GTHSKLVEDPEGAYSQLIRLQ 622
G H +L+ G Y++L + Q
Sbjct: 673 GRHEELLALQ-GLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 3e-79
Identities = 92/214 (42%), Positives = 130/214 (60%), Gaps = 43/214 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V FSYP RP + S++I G A+VG SGSGKST++ L+ R YDP +GE+
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG++L++ L+ +RK I V Q+P LF+G+I++NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
LSGGQ+QRIAIARA+L+DP IL+LDEATSALD E+E ++ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
AL + +T +++AHRLST+R+AD I V+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 8e-79
Identities = 162/526 (30%), Positives = 260/526 (49%), Gaps = 30/526 (5%)
Query: 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
AL LA+ L ++Y FA +++ + + + ++ + + +F+ G
Sbjct: 182 ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTV 239
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPL-----IGV 878
AR+ L G AL ++ + L + F S L +++ L + V
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLDLLFVVVF-LAVMFFYSPTLTGVVIGSLVCYALLSVFV 298
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
+ + F A A+ ++V I T+ + E + + ++ A +
Sbjct: 299 GPILRKRVEDKFERSA-----AATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAA 353
Query: 939 GIR-QGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGIS 997
R + + G F A + GA LV G + + + M A ++
Sbjct: 354 SFRVTNLGNIAGQAIELIQKLTF-AILLWFGAHLVIGGALSPGQLV----AFNMLAGRVT 408
Query: 998 QS----SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYP 1053
Q + D + A + I++ S +P L +++G I ++ F+Y
Sbjct: 409 QPVLRLAQLWQDFQQTGIALERLGDILN--SPTEPRSAGLAALPELRGAITFENIRFRY- 465
Query: 1054 SRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
PD +V +LNL I+ G+ + +VG SGSGKST+ LLQR Y P G + +DGV++
Sbjct: 466 -APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA 524
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGY 1172
WLR+QMG+V QE VLF+ +IR NIA G A + A+++A AH FI L QGY
Sbjct: 525 DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG-APFEHVIHAAKLAGAHDFISELPQGY 583
Query: 1173 DTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR 1232
+T VGE+G LSGGQ+QR+AIARA+V +P+IL+ DEATSALD ESE ++ + + + R
Sbjct: 584 NTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGR 643
Query: 1233 TTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
T +++AHRLST++ D I V++ G I E G+HE L+ + G YA L
Sbjct: 644 TVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 6e-78
Identities = 117/240 (48%), Positives = 158/240 (65%), Gaps = 4/240 (1%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I V F Y +P+ I S+ I G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VL+DG +L W+R+++G+V QE VLF SI+DNIA + E + A +LA A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
FI +LP+G DT+VGE G LSGGQ+QRIAIARA++ +PRIL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ I RT +I+AHRLSTV+NAD I V+ +G+IVE+G+H +L+ G Y+ L +LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL-AENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 1e-77
Identities = 141/366 (38%), Positives = 208/366 (56%), Gaps = 7/366 (1%)
Query: 255 TVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL 314
TV F E+ Y L T K+ ++ ++ + L +F + + L +
Sbjct: 134 TVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV-LNFGQTAIFSTGLRVMMTMSALGV 192
Query: 315 EEGYNG-GQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTK 373
EEG G +VNV + S+ L KMF+ ++ + E+
Sbjct: 193 EEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVS-DAPD 251
Query: 374 GKILDDIR-GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432
L +R G + +V F+Y P I +G S +I G T A+VG+SG+GKST++ L+
Sbjct: 252 APPLWPVRLGAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL 309
Query: 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEI 492
RFYD +G + IDG ++++ Q +R+ IG+V Q+ VLF +I NI YG+ DAT EE+
Sbjct: 310 FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A E A FI LP+G DT VGE G +LSGG+KQR+AIAR ILK+P IL+LDEATSA
Sbjct: 370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429
Query: 553 LDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
LD +E+ +Q AL + RTT+++AHRLST+ +AD I V+ G+IVE+GTH +L+
Sbjct: 430 LDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL-AAG 488
Query: 613 GAYSQL 618
G Y+++
Sbjct: 489 GLYAEM 494
|
Length = 497 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 264 bits (676), Expect = 3e-76
Identities = 190/592 (32%), Positives = 303/592 (51%), Gaps = 45/592 (7%)
Query: 704 EVPTRRLAYLN--KPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSR 761
+V R L+YLN K + +I+ I A + PI L +I+ K D
Sbjct: 5 QVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPI---LFGRIIDAISS-----KSD-- 54
Query: 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM----CFEKVIHMEVSWFDEPEH 817
L LAL AG + + A ++L R+ F ++I M +SW +
Sbjct: 55 --VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RG 111
Query: 818 SSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLII---AFTASWQLALIILVMLP 874
+S A+ L A L G L + Q+++T A ++ AF W+L+++++V+
Sbjct: 112 TSNALHTLLRA----TETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF---CAEEKVMQLYKKK 931
L + M+ K A + Y + +D++ ++ V S+ AE ++ +
Sbjct: 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNN 227
Query: 932 C-EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLT 990
A + SG AS + G LV G+ + +V F
Sbjct: 228 LLSAQYPVLDWWALASGLNRMASTISMMCI----LVIGTVLVIKGELSVGEVI-AFIGFA 282
Query: 991 MTAIG-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTI--LEDVKGEIELHH 1047
IG + Q S F + A A + D E + +E L +VKG +E H
Sbjct: 283 NLLIGRLDQMSGFI---TQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRH 339
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
++F++ + Q D++ + +AG+TVA+VG +G+GK+T+++LLQR YDP G I +DG+
Sbjct: 340 ITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397
Query: 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICS 1167
+I + + LR+ + V Q+ LFN +IR NI G+ AT+ E+ A++ A AH FI
Sbjct: 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILK 456
Query: 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDR 1227
GYDT+VGERG +LSGG++QR+AIARAI+K+ IL+LDEATSALD E+E V++A+D
Sbjct: 457 RSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516
Query: 1228 VMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
+ KNRTT ++AHRLST++NAD++ + G ++EKG + LI DG + L+
Sbjct: 517 LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ-KDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 7e-75
Identities = 159/561 (28%), Positives = 260/561 (46%), Gaps = 32/561 (5%)
Query: 732 GVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNK 791
G+ + L++ ++ + +L + ++ L L+ + A K
Sbjct: 13 GIAIIAQAALLADILTKLIE--GQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAK 70
Query: 792 LIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTA 851
+ +R + +K+ + ++ + +G+ + L ++ +
Sbjct: 71 VRASLRQLVLDKLAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVP 128
Query: 852 AAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGS 911
LI F +W ALI+L+ PLI + K S S D +
Sbjct: 129 LLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRG 188
Query: 912 IRTVASFCAEEKVMQLYKKKCE----APMKTGIRQGMVSGGGFGASFFLLFAFYAAS--- 964
+ T+ +F E + +K E A M +R +S +L F S
Sbjct: 189 LETLRAFGRTEATEERIRKDSEDFRKATMSV-LRIAFLSS-------AVLEFFAYLSIAL 240
Query: 965 --FYAGARLVEDGKATFSDVFKVFFSLTMTA---IGISQSSSFSSDSNKAKSAAASIFAI 1019
Y G RL+ +G T F F L + + SF + ++AA +F +
Sbjct: 241 VAVYIGFRLLGEGDLTL---FAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTL 297
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
++ S E + + EI L ++SF+YP DLNL I+AG+ ALVG
Sbjct: 298 LESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGA 355
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SG+GKST+++LL F P G I ++G++++ L + R+Q+ VSQ P LF TIR NI
Sbjct: 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199
+ DA++ EI AA + A +F+ G DT++GE G LSGGQ QR+A+ARA++
Sbjct: 416 LLARP-DASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473
Query: 1200 DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIV 1259
+LLLDE T+ LDAE+E+++ AL + K +T +V+ HRL +AD I V+ NG +V
Sbjct: 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLV 533
Query: 1260 EKGKHENLINIPDGFYASLIA 1280
E+G HE L + G YA+L+
Sbjct: 534 EQGTHEEL-SEKQGLYANLLK 553
|
Length = 559 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 263 bits (674), Expect = 8e-75
Identities = 163/511 (31%), Positives = 257/511 (50%), Gaps = 28/511 (5%)
Query: 765 LIYLALGAG-----SFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSS 819
L LA+G F+L +SYF VAG K + + FE+V+ + + P S
Sbjct: 186 LWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRME--ARPA-SV 242
Query: 820 GAIGARLSADAASVRALVGDA-LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
G+ +L + SVR A L ++ L+IA L + LV +PLI +
Sbjct: 243 GSFANQLR-EFESVRDFFTSATLTALIDLPFALLFLLVIAIIG-GPLVWVPLVAIPLILL 300
Query: 879 SGYTQMKFMKG-FSADAKMKYEEASQ---VANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
G ++ S A+ E++Q V +++ + T+ + AE + + +++ A
Sbjct: 301 PGL----LLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAA 356
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
++G++ +S + F+ A G L+ DG+ T + L+ A+
Sbjct: 357 LARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVM-LSGRAL 415
Query: 995 G-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL--EDVKGEIELHHVSFK 1051
+ Q + + +AK+A S+ ++ + E L ++GEIE +VSF
Sbjct: 416 APLGQLAGLLTRYQQAKTALQSLDELMQLPVE---RPEGTRFLHRPRLQGEIEFRNVSFA 472
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YP + +++L IR G+ VA++G GSGKST++ LL Y P G + LDGV+I++
Sbjct: 473 YPGQETP-ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
+ LR+ +G V Q+P LF T+R NIA G A + EI A+E+A +F+ G
Sbjct: 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY-ADDEEILRAAELAGVTEFVRRHPDG 590
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN 1231
D +GERG LSGGQ+Q VA+ARA+++DP ILLLDE TSA+D SE +D L R +
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG 650
Query: 1232 RTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262
+T V+V HR S + D I V+ NG IV G
Sbjct: 651 KTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 1e-71
Identities = 155/559 (27%), Positives = 241/559 (43%), Gaps = 53/559 (9%)
Query: 718 IPVILAGTIA-AMANGVILPIYGLLISSVIETFF---KPPHELKKDSRFWALIYLALGAG 773
LA + +++ L++ V++ +P EL +
Sbjct: 1 ARRALALLALLGVLGALLIIAQAWLLARVVDGLISAGEPLAEL----LPALGALALVLLL 56
Query: 774 SFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASV 833
LL Q A A + ++R E V + W G + V
Sbjct: 57 RALLGWLQERAAARAAAAVKSQLRERLLEAVAALGPRWL-----QGRPSGELATLALEGV 111
Query: 834 RALVGDALARIVQNISTAAAGLIIA---FTASWQLALIILVMLPLIGVSGYTQMKFMK-- 888
AL G + Q + L I F W LI+L+ PLI + FM
Sbjct: 112 EALDGYFARYLPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPI-------FMILI 164
Query: 889 GFSADAKMK--YEEASQVAN---DAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
G++A A + + S+++ D + + T+ F + ++ E + +R
Sbjct: 165 GWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVL 224
Query: 944 MVSGGGFGASFFL-LFAFYAASF---YAGARLVEDGKATFSDVFKVF-----FSLTMTAI 994
++ F +S L LFA + + Y G RL+ G + V F L
Sbjct: 225 RIA---FLSSAVLELFATLSVALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLP---- 276
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
+ Q + +AA ++FA++D + + +E VS YP
Sbjct: 277 -LRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAP--VTAAPAPSLEFSGVSVAYPG 333
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
R R ++ + G+ VALVG SG+GKST+++LL F DP G I ++GV +
Sbjct: 334 RR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDT 1174
R Q+ V Q P LF TI NI + DA++AEI+ A E A +F+ +L QG DT
Sbjct: 392 DSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIREALERAGLDEFVAALPQGLDT 450
Query: 1175 MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTT 1234
+GE G LSGGQ QR+A+ARA ++D +LLLDE T+ LDAE+E V +AL + + RT
Sbjct: 451 PIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV 510
Query: 1235 VVVAHRLSTIKNADMIAVV 1253
++V HRL+ AD I V+
Sbjct: 511 LLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 1e-69
Identities = 94/221 (42%), Positives = 140/221 (63%), Gaps = 1/221 (0%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G IE R+V FSYP + + S++I +G A++G+ GSGKST++ L+ Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
VL+DG ++++ +R+ IG V Q+ LF G+++DNI G A E I A ELA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
F++K P G+D +GE G LSGGQ+Q +A+ARA+L DP ILLLDE TSA+D SE+ +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
+E L +++ ++T +I+ HR S + D I V+ G+IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 3e-69
Identities = 155/536 (28%), Positives = 244/536 (45%), Gaps = 97/536 (18%)
Query: 133 RQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFL--QLMA 190
+ A + +L ILR V FF + + G++ R+ + ++V +FL QL
Sbjct: 224 KLAVGMSARFLWHILRLPVRFFA-QRHAGDIASRVQ---------LNDQVAEFLSGQLAT 273
Query: 191 TFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIM-------ISKM----SSRGQGAY 239
T L ++ F L+ML P+L + G A + +S+ + R Q
Sbjct: 274 TALDAVMLVF-----YALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDA 328
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSN----YKKFLVTAYKSGVQEGLAAGIGLGMVM 295
K V + SI T+ + E S K L + GV + + +
Sbjct: 329 GKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTS 388
Query: 296 LIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAF 355
L + AL + GG ++E G +++G L AF Q+
Sbjct: 389 L----NSALILVVGGLRVME-----------------GQLTIG----MLVAF---QSLMS 420
Query: 356 KMFETIN-------RKPEIDA---------------YDTKGKILDD-------IRGDIEL 386
E +N E++ + + + G +EL
Sbjct: 421 SFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVEL 480
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446
R++ F Y + + FS+++ G ALVG SGSGKST+ L+ Y P +GE+L D
Sbjct: 481 RNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539
Query: 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFID 506
GI +E + + + +V Q+ LF G+++DN+ ++ A + A I
Sbjct: 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVIT 599
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
P G D + E G LSGGQ+QR+ IARA++++P IL+LDEATSALD E+EK++ + L
Sbjct: 600 SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
Query: 567 RIMVNR--TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
R R T +IVAHRLST+R+ D I V+ RGK+V++GTH +L GAY++LIR
Sbjct: 660 R----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 4e-68
Identities = 86/224 (38%), Positives = 145/224 (64%), Gaps = 7/224 (3%)
Query: 1041 GEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
G+IE +VS +Y RP++ V ++++ I+ G+ V +VG +GSGKS+++ L R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA-YGKGGDATEAEIQAASEM 1158
G I +DGV+I K+ L LR ++ ++ Q+PVLF+ TIR+N+ +G+ ++ E+ A E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALER 115
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
+F+ SL G DT+V E G LS GQ+Q + +ARA+++ KIL+LDEAT+++D E++
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 1219 RVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262
++Q + K+ T + +AHRL TI ++D I V+ G +VE
Sbjct: 176 ALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 2e-67
Identities = 93/222 (41%), Positives = 138/222 (62%), Gaps = 2/222 (0%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G IE +VSF YP++ + +++L IRAG+ VA++G GSGKST++ LL Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ LDG +I++L LR+ +G V Q+ LF T+R NI G A + I A+E+A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG-APLADDERILRAAELAG 118
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
F+ G D +GERG LSGGQ+Q VA+ARA++ DP ILLLDE TSA+D SE
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1221 VQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262
+++ L +++ ++T +++ HR S + D I V+ +G IV G
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 2e-66
Identities = 109/278 (39%), Positives = 173/278 (62%), Gaps = 4/278 (1%)
Query: 349 AGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSIS 408
AG+AAA K+F + K ++ ++ +I L ++ F YP S +++
Sbjct: 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLT 343
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
I +G ALVG SG+GKST+++L+ F P GE+ ++GI+L++ + RK+I VSQ
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P LF G+I++NI + DA+ EEI A + A +F+ K P G+DT++GE G LSGGQ
Sbjct: 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQA 462
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
QR+A+ARA+L +LLLDE T+ LDAE+E+++ +AL + +T +++ HRL +AD
Sbjct: 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADAD 522
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK 626
I V+ G++VE+GTH +L E +G Y+ L++ QE +
Sbjct: 523 RIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-65
Identities = 112/244 (45%), Positives = 167/244 (68%), Gaps = 3/244 (1%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
L +++G +E R + F + + Q S +G T A+VG +G+GK+T+I+L++R Y
Sbjct: 328 LPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DP G++LIDGI++ + +RK I V Q+ LF SI++NI G++ AT EE+ A
Sbjct: 386 DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAA 445
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ A A FI K G DTLVGE G +LSGG++QR+AIARAILK+ IL+LDEATSALD E
Sbjct: 446 KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+E V+ A+D + NRTT I+AHRLSTVRNAD++ + +G+++EKG+ +L++ +G +
Sbjct: 506 TEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFY 564
Query: 617 QLIR 620
+L+R
Sbjct: 565 KLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 1e-64
Identities = 138/431 (32%), Positives = 233/431 (54%), Gaps = 37/431 (8%)
Query: 196 FLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG-QGAYAKAASVVEQTIGSIR 254
+IA I G L+ V L +IPL+ + G ++ +S+++ + + + A +VE ++ +
Sbjct: 278 LVIAIIGGPLV-WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVE-SLSGLE 335
Query: 255 TVASFTGEKQAMSNYKKFLVTAYKSGVQ-EGLAAGI--------GLGMVMLIVFCSYALS 305
T+ + E + +++ + +SG++ L+ L V ++V Y +S
Sbjct: 336 TIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS 395
Query: 306 VWYGGKLILEEGYNGGQVVNVMVAVLTGSM--SLGEASPCLSAFGAGQA-AAFKMFETIN 362
G+L + GG + VM L+G LG+ + L+ + QA A + + +
Sbjct: 396 D---GELTM-----GGLIACVM---LSGRALAPLGQLAGLLTRYQ--QAKTALQSLDELM 442
Query: 363 RKPEIDAYDTKGKILD--DIRGDIELRDVYFSYPARPNEQI--FSGFSISISSGTTAALV 418
+ P + L ++G+IE R+V F+YP ++ S++I G A++
Sbjct: 443 QLP--VERPEGTRFLHRPRLQGEIEFRNVSFAYP---GQETPALDNVSLTIRPGEKVAII 497
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
G+ GSGKST++ L+ Y P G VL+DG+++++ +R+ IG V Q+P LF G+++D
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557
Query: 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
NIA G A EEI A ELA +F+ + P G+D +GE G LSGGQ+Q +A+ARA+L
Sbjct: 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+DP ILLLDE TSA+D SE+ ++ L R + +T V+V HR S + D I V+ G+I
Sbjct: 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
Query: 599 VEKGTHSKLVE 609
V G +++E
Sbjct: 678 VADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 1e-64
Identities = 98/245 (40%), Positives = 135/245 (55%), Gaps = 4/245 (1%)
Query: 349 AGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSIS 408
G AAA +F ++ P A +E V +YP R S +
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRP--ALRPVSFT 344
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
+ G ALVG SG+GKST+++L+ F DP G + ++G+ L + R +I V Q
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P LF G+I +NI + DA+ EIR A E A +F+ LPQG+DT +GE G LSGGQ
Sbjct: 405 PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQA 464
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
QR+A+ARA L+D +LLLDE T+ LDAE+E V EAL + RT ++V HRL+ AD
Sbjct: 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALAD 524
Query: 589 MIAVI 593
I V+
Sbjct: 525 RIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 3e-64
Identities = 147/505 (29%), Positives = 240/505 (47%), Gaps = 90/505 (17%)
Query: 816 EHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL----IILV 871
++S+G + +R + +R ++ + + + A L + F SW+LAL + LV
Sbjct: 229 QYSTGDLASRAMG-ISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF---CAEEKVMQLY 928
+ + V G Q++ + E + +++ V I ++ AE +
Sbjct: 288 AIAVTLVLGLLQVRK-------ERRLLELSGKISGLTVQLINGISKLRVAGAENRA---- 336
Query: 929 KKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASF------YAGARLVEDGKATFSDV 982
FA +A F A+ +E+ F+ V
Sbjct: 337 -----------------------------FARWAKLFSRQRKLELSAQRIENLLTVFNAV 367
Query: 983 FKVFFSLTMTAIGISQ--SSSFSSDSNKAKSAAASIF---------AIIDRESKIDPSDE 1031
V S + A IS + S S A + A F +I + I +
Sbjct: 368 LPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWER 427
Query: 1032 SGTILE-------------DVKGEIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALV 1077
+ ILE + G IE+ V+F+Y RPD + D++L+I G+ VA+V
Sbjct: 428 AKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIV 485
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
G SGSGKST++ LL F P++G + DG ++ L ++ +R+Q+G+V Q L + +I
Sbjct: 486 GPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545
Query: 1138 NIAYGKGGDA--TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195
NIA G A T E A+ MA + I ++ G T++ E G LSGGQ+QR+ IAR
Sbjct: 546 NIA----GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601
Query: 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKN 1255
A+V+ P+ILL DEATSALD ++ +V ++L+R+ T +V+AHRLSTI+NAD I V+
Sbjct: 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDA 659
Query: 1256 GVIVEKGKHENLINIPDGFYASLIA 1280
G +V++G ++ L+ G +A L
Sbjct: 660 GRVVQQGTYDELMARE-GLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 5e-64
Identities = 128/473 (27%), Positives = 203/473 (42%), Gaps = 42/473 (8%)
Query: 838 GDALARIVQNIST------------AAAGLIIAFTA------SWQLAL----IILVMLPL 875
GD L R+V ++ A ++IA S LAL I+L++L +
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 876 IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAP 935
I Y + + F A D V + F AE+ + +
Sbjct: 175 IPTLFY---RAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231
Query: 936 MKTGIRQGMVSG-GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVF-KVFFSLTMTA 993
+K +Q +G + A V G +
Sbjct: 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALE 290
Query: 994 IGISQSSSFSSDSNKAKS----AAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVS 1049
+F + A AS + D + +EL +VS
Sbjct: 291 -------AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVS 343
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
F YP + + ++ NL + G+ VA++G SGSGKST++ LL +DP G ITL+GVEI
Sbjct: 344 FTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI 402
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ 1169
L + LR+ + +++Q LF+ T+R N+ DA++ E+ AA + K + S
Sbjct: 403 ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAP 461
Query: 1170 QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
G +T +GE G +LSGG+++R+A+ARA++ D + LLDE T LD +ER V L
Sbjct: 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521
Query: 1230 KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALH 1282
+ +T ++V HRL ++ D I V+ NG I+E+G H L+ +G Y L L
Sbjct: 522 EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQLD 573
|
Length = 573 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 5e-63
Identities = 154/487 (31%), Positives = 242/487 (49%), Gaps = 32/487 (6%)
Query: 147 LRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206
LR V+FF + TG++ R G + + + G + L + L L+ F W L
Sbjct: 220 LRLPVSFFRQYS-TGDLASRAMGISQIRRILSGSTLTTLLSGIFALLNLGLM-FYYSWKL 277
Query: 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSI---RTVASFTGEK 263
LV ++ + V+ ++ + R K + + Q I I R + E
Sbjct: 278 ALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGA---EN 334
Query: 264 QA----MSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYN 319
+A + + + E L +L V S AL L+ G +
Sbjct: 335 RAFARWAKLFSRQRKLELSAQRIENLLTVFN---AVLPVLTSAAL-FAAAISLLGGAGLS 390
Query: 320 GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDA---YDTKGKI 376
G + A + S ++ + S L + A ++E KP ++A D
Sbjct: 391 LGSFLAFNTAFGSFSGAVTQLSNTLISI----LAVIPLWERA--KPILEALPEVDEAKTD 444
Query: 377 LDDIRGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
+ G IE+ V F Y RP+ I S+ I G A+VG SGSGKST++ L+ F
Sbjct: 445 PGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495
P++G V DG +L +Q +R+++G+V Q L +GSI +NIA G T +E A
Sbjct: 503 ETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GGAPLTLDEAWEA 561
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+A A+ I +P G+ T++ E G LSGGQ+QR+ IARA+++ PRILL DEATSALD
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ +V E+L+R+ V R +++AHRLST+RNAD I V+ G++V++GT+ +L+ EG +
Sbjct: 622 RTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLF 678
Query: 616 SQLIRLQ 622
+QL R Q
Sbjct: 679 AQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 1e-62
Identities = 82/224 (36%), Positives = 144/224 (64%), Gaps = 6/224 (2%)
Query: 382 GDIELRDVYFSYPARPNEQ-IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
GDIE ++V Y RPN + S SI G +VG++GSGKS+++ + R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVATELA 499
G +LIDG+++ + L +R +I ++ Q+PVLF+G+I+ N+ +G+ + EE+ A E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+F++ LP G+DT+V E G LS GQ+Q + +ARA+L+ +IL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
++Q+ + + T + +AHRL T+ ++D I V+ +G++VE +
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 1e-62
Identities = 165/576 (28%), Positives = 284/576 (49%), Gaps = 42/576 (7%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
L++ I AI L + +I+T+ ++ + +++ + I I
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM----GTLGIISIGLIIAYIIQQIL 212
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++Q+ + G+R + I Y+K + ++FF TGE+V R + D I DA+
Sbjct: 213 SYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALA 270
Query: 180 EKV-GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
+ FL + + G + + LL L+ L SIP+ A+ + +K++ A
Sbjct: 271 STILSLFLDMWILVIVGLFLVR-QNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQA 329
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQA-------MSNY-KKFLVTAYKSGVQEGLAAGIG 290
A S + + + I T+ S T E + +Y K Q+ + A
Sbjct: 330 NAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTK 389
Query: 291 LGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVV--NVMVAVLTGSM-SLGEASPCLSAF 347
L + ++I+ W G L++ GQ++ N +++ + ++ P L
Sbjct: 390 LILNVVIL--------WTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKL--- 438
Query: 348 GAGQAAAFKMFETINRKPEIDAYDTKGKILD---DIRGDIELRDVYFSYPARPNEQIFSG 404
QAA +N +D+ K ++ GDI + DV +SY I S
Sbjct: 439 ---QAARVA-NNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSD 492
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
S++I + +VG SGSGKST+ L+ F+ ++GE+L++G +LK+ +R+ I
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552
Query: 465 VSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
+ QEP +F+GSI +N+ G K++ + +EI A E+A I+ +P G T + E G+ +
Sbjct: 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583
SGGQKQRIA+ARA+L D ++L+LDE+TS LD +EK + L + ++T + VAHRLS
Sbjct: 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSV 671
Query: 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+ +D I V+ GKI+E+G+H +L+ D G Y+ LI
Sbjct: 672 AKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 2e-61
Identities = 127/482 (26%), Positives = 235/482 (48%), Gaps = 43/482 (8%)
Query: 160 TGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219
+G+++ R+ D + + +L+++A + ++ + L+ SIPL +
Sbjct: 114 SGDLLNRLVADVDALDNL-------YLRVIAPAVVALVLIAVVTIGLSFF---SIPLALL 163
Query: 220 SGGVMAIM------ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF- 272
G ++ ++ + + R GA+ Q ++R+ FT Q + F
Sbjct: 164 LGLILLLLLLIIPTLFYRAGRKFGAHLA------QGRAALRS--QFTDWVQGQAELLIFG 215
Query: 273 ----LVTAYKSGVQEGLAAGIGL----GMVMLIVFCSYALSVWYGGKLILEEGYNGGQVV 324
TA ++ L A G+ I+ L V + + G
Sbjct: 216 AEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQ 275
Query: 325 NVMVAVLTGSMSLGEASPCLS--AF---GAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379
L + EA L+ AF G A+A ++ + +++KPE+ +
Sbjct: 276 PGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT---FPDEQTAT 332
Query: 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
+ELR+V F+YP + + F+++++ G A++G+SGSGKST++ L+ +DPQ
Sbjct: 333 TGQALELRNVSFTYPGQQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
G + ++G+ + Q +R+ I +++Q LF+G+++DN+ DA+ EE+ A +
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
K ++ P G++T +GE G +LSGG+++R+A+ARA+L D + LLDE T LD +E+
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
V L +T ++V HRL + D I V+ GKI+E+GTH++L+ + G Y +L
Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLY 570
Query: 620 RL 621
+L
Sbjct: 571 QL 572
|
Length = 573 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 3e-60
Identities = 95/269 (35%), Positives = 163/269 (60%), Gaps = 5/269 (1%)
Query: 352 AAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISS 411
A+A ++ E +KPE+ + T D + + L +V F+YP +P + G S+ I +
Sbjct: 309 ASARRINEITEQKPEVT-FPTTSTAAAD-QVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKA 365
Query: 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471
G AL+G++G GKST++ L+ R +DPQ GE+L++G + ++ +R+ I +VSQ L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
F+ +++DN+ +A+ E + + K ++ +G++ +GE G QLSGG+++R+
Sbjct: 426 FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484
Query: 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591
IARA+L D +LLLDE T LDAE+E+ + E L N+T +++ HRL+ + D I
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544
Query: 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
V+ G+I+E+GTH +L+ +G Y QL +
Sbjct: 545 VMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 5e-60
Identities = 104/266 (39%), Positives = 163/266 (61%), Gaps = 7/266 (2%)
Query: 1011 SAAAS-IFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIR 1069
SAA S I A++ + E + + +GE++++ F YP D ++N ++
Sbjct: 284 SAAYSRIRAMLAEAPVVKDGSEP---VPEGRGELDVNIRQFTYPQT-DHPALENVNFTLK 339
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129
G+ + + G +GSGKST++SL+QR +D G I + + KLQL R ++ +VSQ P
Sbjct: 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399
Query: 1130 LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189
LF+DT+ NIA G+ DAT+ EI+ + +A+ H I L QGYDT VGERG+ LSGGQKQ
Sbjct: 400 LFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458
Query: 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADM 1249
R++IARA++ + +IL+LD+A SA+D +E + L + + RT ++ AHRLS + A
Sbjct: 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASE 518
Query: 1250 IAVVKNGVIVEKGKHENLINIPDGFY 1275
I V+++G I ++G H+ L G+Y
Sbjct: 519 ILVMQHGHIAQRGNHDQLAQQS-GWY 543
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-59
Identities = 82/216 (37%), Positives = 139/216 (64%), Gaps = 4/216 (1%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464
+ ++ +G ALVG SG+GK+++++ + F P G + I+GI L+E W RK +
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW-RKHLSW 427
Query: 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524
V Q P L G+++DN+ G DA+ E+++ A E A ++F+ LPQG+DT +G+ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584
GQ QR+A+ARA+L+ ++LLLDE T++LDA SE++V +AL+ +TT++V H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
D I V+ G+IV++G +++L + G ++ L+
Sbjct: 548 AQWDQIWVMQDGQIVQQGDYAELSQAG-GLFATLLA 582
|
Length = 588 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 3e-59
Identities = 100/242 (41%), Positives = 150/242 (61%), Gaps = 9/242 (3%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G +EL +++F Y S + + + +L ++ G+ VALVG SGSGKST+ L+ Y P +G
Sbjct: 476 GYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDAT--EAEIQAASEM 1158
I DG+ +++ + L + +V Q+ LF T+R N+ D T +A++ A +
Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW---DPTIPDADLVRACKD 591
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
A H I S GYD + E G LSGGQ+QR+ IARA+V++P IL+LDEATSALD E+E
Sbjct: 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE 651
Query: 1219 RVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
+++ D L R + T ++VAHRLSTI++ D I V++ G +V++G HE L + G YA L
Sbjct: 652 KIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG-GAYARL 708
Query: 1279 IA 1280
I
Sbjct: 709 IR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 211 bits (541), Expect = 2e-58
Identities = 95/269 (35%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 1011 SAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRA 1070
++A I I +++ ++ S + + L++VSF YP +P V + L+L+I+A
Sbjct: 309 ASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKA 365
Query: 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130
G+ VAL+G +G GKST++ LL R +DP G I L+G I LRQ + +VSQ L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR 1190
F+ T+R N+ +A++ + + K + +G + +GE G QLSGG+++R
Sbjct: 426 FSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRR 483
Query: 1191 VAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMI 1250
+ IARA++ D +LLLDE T LDAE+ER + + L +N+T +++ HRL+ ++ D I
Sbjct: 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRI 543
Query: 1251 AVVKNGVIVEKGKHENLINIPDGFYASLI 1279
V+ NG I+E+G H+ L+ G Y L
Sbjct: 544 CVMDNGQIIEQGTHQELLA-QQGRYYQLK 571
|
Length = 574 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 220 bits (561), Expect = 4e-58
Identities = 189/714 (26%), Positives = 327/714 (45%), Gaps = 105/714 (14%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSE---------KGKQTEKTESVPFYKLFT 51
MNG S SAS + D + S N + + + + + ++F+
Sbjct: 763 MNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFS 822
Query: 52 FA-DSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFV 110
+ D AL I+ + GL P+ LL+ ++T D N +K S + +
Sbjct: 823 YKKDVTIIALSIL-----VAGGL-YPVFALLYAKYVSTLFDFANLEANSNKYS---LYIL 873
Query: 111 YLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNT-GEVVGRMSG 169
+ I I+ L+ + GE+ ++ + IL Q+++FFD + + G + ++
Sbjct: 874 VIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINR 933
Query: 170 DTVLIQDAMGEKVGKFLQLMATFLGGFLIAF----IKGWLLTLVMLSSIPLLAMSGGVMA 225
D L++ + + F + FL +++F I +LT + + A+ + A
Sbjct: 934 DVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTA 993
Query: 226 I--MISKMSSRGQGAYAKAAS---------VVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274
+ K ++ +A + ++++ ++ TV + E + +K +
Sbjct: 994 NKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAID 1053
Query: 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGS 334
+ K ++ L + G + + W+G LI V + M ++ T
Sbjct: 1054 YSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTI---LVDDFMKSLFTFL 1110
Query: 335 MSLGEASPCLSAFGAGQAAAF---KMFETINRKPEIDAYDTKG---KILDDIRGDIELRD 388
+ A +S G + A K + I RK ID D G K +DI+G IE+ D
Sbjct: 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMD 1170
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI--- 445
V F Y +RPN I+ + S S T A+VG++GSGKSTV+SL+ RFYD + ++
Sbjct: 1171 VNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKN 1230
Query: 446 ----DGINLKEFQ----------------------------------------------- 454
D N +++Q
Sbjct: 1231 EHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYN 1290
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
L+ +R +VSQEP+LF SI +NI +GK+DAT E+++ A + A +FI+ LP DT
Sbjct: 1291 LKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDT 1350
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
VG +G LSGGQKQRIAIARA+L++P+ILLLDEATS+LD+ SEK++++ + I ++
Sbjct: 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410
Query: 573 TTVIVAHRLSTVRNADMIAVIHR----GKIVE-KGTHSKLVEDPEGAYSQLIRL 621
T + +AHR+++++ +D I V + G V+ GTH +L+ +G Y + ++L
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 7e-58
Identities = 152/527 (28%), Positives = 246/527 (46%), Gaps = 81/527 (15%)
Query: 135 ATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG 194
A +R + + + RQ F+ TG+++ R + D + A GE V L L+ + +
Sbjct: 68 AVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGV---LTLVDSLVM 123
Query: 195 GFLIAFIK----GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR-------GQGAYAKAA 243
G + + W LTL+ L +P VMAIMI + + Q A++
Sbjct: 124 GCAVLIVMSTQISWQLTLLALLPMP-------VMAIMIKRYGDQLHERFKLAQAAFSSLN 176
Query: 244 SVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG----------IGLGM 293
++++ SIR + +F G + S F A +G + A I +GM
Sbjct: 177 DRTQESLTSIRMIKAF-GLEDRQSA--LFAADAEDTGKKNMRVARIDARFDPTIYIAIGM 233
Query: 294 VMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGA---- 349
L L++ G + V+ GS++LG+ + + G
Sbjct: 234 ANL-------LAIGGGSWM-----------------VVNGSLTLGQLTSFVMYLGLMIWP 269
Query: 350 -------------GQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPAR 396
G AA ++ + P + + + + RG++++ F+YP
Sbjct: 270 MLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT 326
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
+ + ++ G + G +GSGKST++SLI+R +D G++ I L + QL
Sbjct: 327 -DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD 385
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
R ++ +VSQ P LF+ ++ +NIA G+ DAT +EI LA+ I +LPQG DT V
Sbjct: 386 SWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEV 445
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
GE G LSGGQKQRI+IARA+L + IL+LD+A SA+D +E + L + RT +I
Sbjct: 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVII 505
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
AHRLS + A I V+ G I ++G H +L + G Y + R Q+
Sbjct: 506 SAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRYQQ 551
|
Length = 569 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 9e-57
Identities = 97/254 (38%), Positives = 156/254 (61%), Gaps = 8/254 (3%)
Query: 378 DDIR----GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433
+D R G I++ +V F+Y R + + ++S+ S ALVG +GSGKST+ SL+
Sbjct: 331 NDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM 388
Query: 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493
+Y GE+ +DG L +R+ + +V Q+PV+ + N+ G+D + E++
Sbjct: 389 GYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQVW 447
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A E A+ LP G+ T +GE G LS GQKQ +A+AR +++ P+IL+LDEAT+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 554 DAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
D+ +E+ +Q+AL + + T V++AHRLST+ AD I V+HRG+ VE+GTH +L+ +G
Sbjct: 508 DSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QG 566
Query: 614 AYSQLIRLQEANKE 627
Y Q+ +LQ A +E
Sbjct: 567 RYWQMYQLQLAGEE 580
|
Length = 592 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 3e-56
Identities = 82/217 (37%), Positives = 140/217 (64%), Gaps = 3/217 (1%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
LN + AG+ +ALVG SG+GK+++++ L F P G + ++G+E+++L + R+ +
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 1124 VSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQL 1183
V Q P L + T+R N+ G DA++ ++Q A E A +F+ L QG DT +G++ L
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486
Query: 1184 SGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLST 1243
S GQ QR+A+ARA+++ ++LLLDE T++LDA SE++V AL+ + +TT++V H+L
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
Query: 1244 IKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIA 1280
+ D I V+++G IV++G + L G +A+L+A
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAG-GLFATLLA 582
|
Length = 588 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 6e-55
Identities = 99/228 (43%), Positives = 142/228 (62%), Gaps = 4/228 (1%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G I++ +VSF Y R D V +++NL + + VALVG +GSGKST+ SLL +Y G
Sbjct: 339 GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
I LDG + L LRQ + +V Q+PV+ DT AN+ G+ D +E ++ A E
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQ 454
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
+ SL G T +GE+G LS GQKQ +A+AR +V+ P+IL+LDEAT+ +D+ +E+
Sbjct: 455 LAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514
Query: 1221 VQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI 1268
+Q AL V ++ T VV+AHRLSTI AD I V+ G VE+G H+ L+
Sbjct: 515 IQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 4e-53
Identities = 146/525 (27%), Positives = 245/525 (46%), Gaps = 50/525 (9%)
Query: 776 LLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRA 835
+LS Q + V G +L I + + + +S+F +G I +R + ++ + A
Sbjct: 211 ILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFTDASSIIDA 268
Query: 836 LVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK 895
L L+ + GL + L L+ L+ +P+ V + + DA
Sbjct: 269 LASTILSLFLDMWILVIVGLFLVRQNM-LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAM 327
Query: 896 MKYEEASQVANDA----VGSIRTVASFCAEEKVMQL-------YKKKCEAPMKT-GIRQG 943
+A+ V N + + I T+ S +E + Y K K +Q
Sbjct: 328 ----QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383
Query: 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKV-----FFSLTMTAIGISQ 998
+ + + +L + GA LV GK T + +F + I Q
Sbjct: 384 IKAVTKLILNVVIL--------WTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQ 435
Query: 999 SSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES----GTILEDVKGEIELHHVSFKYPS 1054
K AA + E + S+ T L ++ G+I ++ VS+ Y
Sbjct: 436 P----------KLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY 485
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
+ D++L I+ +VG SGSGKST+ LL F+ +G I L+G ++ +
Sbjct: 486 --GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDT 1174
LRQ + + QEP +F+ +I N+ G + ++ EI AA E+A I ++ GY T
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQT 603
Query: 1175 MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTT 1234
+ E G +SGGQKQR+A+ARA++ D K+L+LDE+TS LD +E+ + + L ++++T
Sbjct: 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTI 662
Query: 1235 VVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
+ VAHRLS K +D I V+ +G I+E+G H+ L++ +GFYASLI
Sbjct: 663 IFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD-RNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 3e-49
Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 13/302 (4%)
Query: 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT-GSMSLGEA---- 340
A +G + +L + ++W GG G++ V +AVL ++ EA
Sbjct: 236 ATALGAALTLLAAGLAVLGALWAGG-----PAVADGRLAPVTLAVLVLLPLAAFEAFAAL 290
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKG-KILDDIRGDIELRDVYFSYPARPNE 399
+AAA ++ E ++ + + + +ELRD+ YP
Sbjct: 291 PAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAP 348
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
+ G S+ + G A++G SGSGKST+++ + DP GEV +DG+ + +R
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519
+++ + +Q+ LF ++++N+ + DAT EE+ A E A ++ LP G+DT++GE
Sbjct: 409 RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
G +LSGG++QR+A+ARA+L D ILLLDE T LDAE+ + E L + RT V++ H
Sbjct: 469 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
Query: 580 RL 581
L
Sbjct: 529 HL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 1e-48
Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 12/279 (4%)
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+ I A L PL+ F D + ++ +S +++ + + +G
Sbjct: 5 ILLLILAGATALVFPLLLGRFLDSLIDGNGDERSS-------LISLAILLIAVGVLQGLL 57
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFD---NETNTGEVVGRMSGDTVLIQDAM 178
LQ GER RIR + +LRQ + + + GE+ R++ D I+D +
Sbjct: 58 LQG--SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGL 115
Query: 179 GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
G+K+G F Q +AT +GGF++ F GW LTLV+L+ +PLL + V+A + K++ + Q A
Sbjct: 116 GDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKA 175
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298
YAKA SV E+++ IRTV +F E+ + Y K L A K+G+++ + AG+ G+ LI
Sbjct: 176 YAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLIS 235
Query: 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSL 337
+ SYAL++W+G L++ G + G V + L S L
Sbjct: 236 YLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-48
Identities = 129/448 (28%), Positives = 208/448 (46%), Gaps = 49/448 (10%)
Query: 818 SSGAIGARLSADAAS-----VRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVM 872
G + RL AD + VR +V +A +V + AA ++ S ALI+
Sbjct: 108 RRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVL-----SVPAALILAAG 162
Query: 873 LPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV----MQLY 928
L L G S A E+A + + T A A E V +
Sbjct: 163 LLLAGF-------VAPLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAA 215
Query: 929 KKKCEAPMK--TGIRQGMVSGGGFGASFFLLFAFYA--ASFYAGARLVEDGK---ATFS- 980
+ E + T + + GA+ LL A A + +AG V DG+ T +
Sbjct: 216 LAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAV 275
Query: 981 ------DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI-DPSDESG 1033
F+ F +L A +++ ++AA I ++D + + S +
Sbjct: 276 LVLLPLAAFEAFAALPAAAQQLTR----------VRAAAERIVEVLDAAGPVAEGSAPAA 325
Query: 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093
+ K +EL +S YP V ++L + G+ VA++G SGSGKST+++ L
Sbjct: 326 GAVGLGKPTLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAG 383
Query: 1094 FYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQ 1153
DP G +TLDGV + L +R+++ + +Q+ LF+ T+R N+ + DAT+ E+
Sbjct: 384 LLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARP-DATDEELW 442
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
AA E ++ +L G DT++GE G +LSGG++QR+A+ARA++ D ILLLDE T L
Sbjct: 443 AALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502
Query: 1214 DAESERVVQDALDRVMKNRTTVVVAHRL 1241
DAE+ + + L + RT V++ H L
Sbjct: 503 DAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 2e-48
Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 30/237 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
IEL ++ Y D +D++L I G+ AL+G SG GKST++ LL R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1098 DAGHITLDGVEIQKLQLK--WLRQQMGLVSQEPVLFNDTIRANIAYG------KGGDATE 1149
D G + LDG +I L + LR+++G+V Q+P F +I N+AYG K + +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1150 AEIQAASEMANAHKFICSLQQGYDTMVGER--GLQLSGGQKQRVAIARAIVKDPKILLLD 1207
++ A A V +R L LSGGQ+QR+ +ARA+ +P++LLLD
Sbjct: 118 ERVEEALRKA-----------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 1208 EATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
E TSALD S +++ + + K T V+V H + AD A + NG +VE G
Sbjct: 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 2e-48
Identities = 89/241 (36%), Positives = 125/241 (51%), Gaps = 31/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IELRD+ Y + S+ I G AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 439 QAGEVLIDG--INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GEVL+DG I + + +R+++G+V Q+P F GSI DN+AYG K +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 491 EIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
E RV L AA + D+L H LSGGQ+QR+ +ARA+ +P +LLLD
Sbjct: 118 E-RVEEALRKAALWDEVKDRL----------HALGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSK 606
E TSALD S ++E + + T VIV H + R AD A + G++VE G +
Sbjct: 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226
Query: 607 L 607
+
Sbjct: 227 I 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 2e-47
Identities = 72/220 (32%), Positives = 122/220 (55%), Gaps = 42/220 (19%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ +++VSF YP + + QV ++L+L+++ G+ +AL+G SGSGKST++ LL P G I
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
TLDGV + L+ K L + +++Q P LF+ T+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
G + SGG++QR+A+AR +++D I+LLDE T LD +ER +
Sbjct: 96 -----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138
Query: 1223 DALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262
+ V+K++T + + H L+ I++ D I ++NG I+ +G
Sbjct: 139 SLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 6e-45
Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 29/226 (12%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
EL ++SF YP D++L I+ G+ V +VG +GSGKST++ LL P +G +
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG---KGGDATEAEIQAASEM 1158
+DG ++ KL LK LR+++GLV Q P F T+ +A+G G E E + +
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1159 ANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+VG GL LSGGQKQRVAIA + DP ILLLDE T+
Sbjct: 120 E---------------LVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
Query: 1213 LDAESERVVQDALDRVMKNRTTVVVA-HRLSTIKN-ADMIAVVKNG 1256
LD R + + L ++ T+++ H L + AD + V+++G
Sbjct: 165 LDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 8e-45
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 49/219 (22%)
Query: 1043 IELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+ +VSF+YP P V R+++ I G+++A++G SGSGKST+ L+ P +G
Sbjct: 1 LEVENVSFRYPGAEPP---VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ LDG +I + L +G + Q+ LF+ +I NI
Sbjct: 58 RVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------- 96
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
LSGGQ+QR+ +ARA+ +P+IL+LDE S LD E ER
Sbjct: 97 ----------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134
Query: 1221 VQDALDRV-MKNRTTVVVAHRLSTIKNADMIAVVKNGVI 1258
+ A+ + T +V+AHR T+ +AD I V+++G +
Sbjct: 135 LNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 1e-44
Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 49/220 (22%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +VS +Y V D++L I AG+ VAL+G SGSGKST++ + +PD+G I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1103 TLDGVEIQKL--QLKWLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMA 1159
+DG ++ L +L LR+++G+V Q+ LF + T+ NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1160 NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
LSGGQ+QRVA+ARA+ DP +LLLDE TSALD + R
Sbjct: 101 -----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137
Query: 1220 VVQDALDRVMKN--RTTVVVAHRLS-TIKNADMIAVVKNG 1256
V+ L + T V+V H L + AD + V+++G
Sbjct: 138 EVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-44
Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 5/234 (2%)
Query: 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
P+ L +G + + ++ P + + + ++ ++AG+ + ++G SGSGKST
Sbjct: 319 LPAAAERMPLPAPQGALSVERLTAAPPGQKKP-ILKGISFALQAGEALGIIGPSGSGKST 377
Query: 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD 1146
+ LL + P +G + LDG ++++ + L + +G + Q+ LF+ TI NIA G +
Sbjct: 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIAR-FGEE 436
Query: 1147 ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLL 1206
A ++ A+ +A H+ I L QGYDT +GE G LSGGQ+QR+A+ARA+ DP +++L
Sbjct: 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVL 496
Query: 1207 DEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKNADMIAVVKNGVI 1258
DE S LD+E E + A+ K R T VV+AHR S + + D I V+++G I
Sbjct: 497 DEPNSNLDSEGEAALAAAILAA-KARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 6e-44
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 44/216 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ +V F YP + S SI G + A++G SGSGKST+ LI P +G V
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+DG ++ ++ + +G + Q+ LF+GSI +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
LSGGQ+QR+ +ARA+ +PRIL+LDE S LD E E+ + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 564 ALDRI-MVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
A+ + T +++AHR T+ +AD I V+ G++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-43
Identities = 79/235 (33%), Positives = 138/235 (58%), Gaps = 5/235 (2%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
L + +G + + +V+ P R ++ ++AG+ +A++G SGSGKST+ L+ +
Sbjct: 310 LPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAE-IQA 1154
P +G + LDG ++++ + + +G + Q+ LF T+ NIA + G+ + E I
Sbjct: 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIA--RFGENADPEKIIE 426
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
A+++A H+ I L GYDT++G G LSGGQ+QR+A+ARA+ DPK+++LDE S LD
Sbjct: 427 AAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 1215 AESERVVQDALDRVMKNR-TTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI 1268
E E+ + +A+ + T VV+ HR S + D I V+++G I G+ + ++
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 1e-43
Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 2/224 (0%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G + + +V P + G S S+ +G A++G SGSGKST+ LI + P +
Sbjct: 314 EGHLSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS 372
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
G V +DG +LK++ + K IG + Q+ LF G++ +NIA ++A E+I A +LA
Sbjct: 373 GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAG 432
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+ I +LP G DT++G G LSGGQ+QRIA+ARA+ DP++++LDE S LD E E+
Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492
Query: 561 VQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+ A+ + T V++ HR S + D I V+ G+I G
Sbjct: 493 LANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-43
Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 41/219 (18%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + +V FSYP + +Q+ S+ + G AL+G+SGSGKST++ L+ PQ GE+
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+DG+ + + + + I +++Q P LF ++++N+
Sbjct: 60 TLDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
G + SGG++QR+A+AR +L+D I+LLDE T LD +E+ +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
+ ++ ++T + + H L+ + + D I + GKI+ +G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-43
Identities = 82/242 (33%), Positives = 130/242 (53%), Gaps = 23/242 (9%)
Query: 1043 IELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
IEL +VS + V D++L+I G+ ++G SG+GKST++ L+ P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1101 HITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAYG-KGGDATEAEIQA- 1154
+ +DG ++ L +L+ LRQ++G++ Q L + T+ N+A+ + +AEI+
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+E+ G QLSGGQKQRVAIARA+ +PKILL DEATSALD
Sbjct: 122 VAELLE--------LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 1215 AESERVVQDALDRVMKNR----TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
E+ + + + L + NR T V++ H + +K D +AV+ G +VE+G +
Sbjct: 174 PETTQSILELLKDI--NRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231
Query: 1270 IP 1271
P
Sbjct: 232 NP 233
|
Length = 339 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 4e-43
Identities = 76/224 (33%), Positives = 133/224 (59%), Gaps = 25/224 (11%)
Query: 1041 GEIELHHVSFKYPSRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
GEIE+ ++S +Y PD+ V ++++ K++AG+ + +VG +G+GKST++ L RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI-AYGKGGDATEAEIQAASEM 1158
G I +DG++I + L+ LR + ++ Q+P LF+ TIR+N+ + + ++ EI A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE---YSDEEIYGALR- 118
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
V E GL LS GQ+Q + +ARA++K P++L+LDEAT+++D ++
Sbjct: 119 -----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161
Query: 1219 RVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262
++Q + N T + +AHRL TI + D I V+ G + E
Sbjct: 162 ALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 6e-43
Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 32/247 (12%)
Query: 384 IELRDVYFSYPARPNEQI--FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
IEL +V ++ + S+ I G ++G SG+GKST++ LI P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 442 EVLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEI 492
V +DG + L E +L+ +R+KIG++ Q L + ++ +N+A+ G A ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ- 120
Query: 493 RVAT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
RVA EL + D+ P QLSGGQKQR+AIARA+ +P+ILL DEAT
Sbjct: 121 RVAELLELVGLSDKADRYP-----------AQLSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 551 SALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
SALD E+ + + E L I NR T V++ H + V+ D +AV+ +G++VE+GT S
Sbjct: 170 SALDPETTQSILELLKDI--NRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVS 227
Query: 606 KLVEDPE 612
++ +P+
Sbjct: 228 EVFANPK 234
|
Length = 339 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 1e-42
Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 43/230 (18%)
Query: 1043 IELHHVSFKYPSRPDVQVF--RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + SF + S F +D+NL++ G+ VA+VG GSGKS+++S L + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDAT--EAEIQAASEM 1158
+++ G + VSQEP + N TIR NI +GK D E I+A
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKA---- 103
Query: 1159 ANAHKFICSLQQ-------GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
C+L+ G T +GE+G+ LSGGQKQR+++ARA+ D I LLD+ S
Sbjct: 104 -------CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLS 156
Query: 1212 ALDAES-----ERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNG 1256
A+DA E + L + N+T ++V H+L + +AD I V+ NG
Sbjct: 157 AVDAHVGRHIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 2e-42
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
EL+++ FSYP S++I G +VG +GSGKST++ L+ P +GEVL
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVAT 496
+DG +L + L+ +R+K+GLV Q P F ++++ +A+G ++ E + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL D+ P LSGGQKQR+AIA + DP ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 557 SEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGK 597
+ + E L ++ T+I+ H L + AD + V+ GK
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-42
Identities = 83/247 (33%), Positives = 131/247 (53%), Gaps = 31/247 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL ++ + R V + ++L +R G+ +A++G SGSGKST++ L+ PD+G +
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAYG--KGGDATEAEIQAAS 1156
+DG +I L +L LR++MG++ Q LF+ T+ N+A+ + +E EI+
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 1157 EMANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
L+ VG RG +LSGG K+RVA+ARA+ DP++LL DE T
Sbjct: 118 LEK--------LE-----AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 1211 SALDAESERVVQDALDRV--MKNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENL 1267
+ LD + V+ D + + T+++V H L T AD IAV+ +G IV +G E L
Sbjct: 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
Query: 1268 INIPDGF 1274
D
Sbjct: 225 RASDDPL 231
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 4e-42
Identities = 84/228 (36%), Positives = 130/228 (57%), Gaps = 10/228 (4%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
L +G + + + + P + + I G S ++ +G ++G SGSGKST+ L+
Sbjct: 327 PLPAPQGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385
Query: 436 YDPQAGEVLIDGINLKEFQLQWIR----KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491
+ P +G V +DG +L+ QW R + IG + Q+ LF G+I +NIA ++A E+
Sbjct: 386 WPPTSGSVRLDGADLR----QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ A LA + I +LPQG DT +GE G LSGGQ+QRIA+ARA+ DP +++LDE S
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 552 ALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTVRNADMIAVIHRGKI 598
LD+E E + A+ T V++AHR S + + D I V+ G+I
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 4e-42
Identities = 71/223 (31%), Positives = 125/223 (56%), Gaps = 22/223 (9%)
Query: 382 GDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G+IE+ ++ Y P+ + S + +G +VG++G+GKST+I + RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
G++ IDGI++ L+ +R + ++ Q+P LF+G+I+ N+ D+ + EEI A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP-FDEYSDEEIYGALR--- 118
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
V E G LS GQ+Q + +ARA+LK PR+L+LDEAT+++D ++ +
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+Q+ + N T + +AHRL T+ + D I V+ G++ E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 5e-42
Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 26/243 (10%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IEL +VS + V +D++L + G+ ++G SG+GKST++ + P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEI 1152
+ +DG ++ L +L+ R+++G++ Q L + T+ N+A G E +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1153 QAASEMAN-AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
E+ K Y QLSGGQKQRV IARA+ +PK+LL DEATS
Sbjct: 122 LELLELVGLEDK-----ADAYPA-------QLSGGQKQRVGIARALANNPKVLLCDEATS 169
Query: 1212 ALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268
ALD E+ + + L + + T V++ H + +K D +AV++ G +VE+G E +
Sbjct: 170 ALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
Query: 1269 NIP 1271
P
Sbjct: 230 ANP 232
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 7e-42
Identities = 89/256 (34%), Positives = 146/256 (57%), Gaps = 7/256 (2%)
Query: 1029 SDESGTILEDVKGEIELHHVSFKYPS--RPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
S S + L + GEI++H + +Y + +P V + + I+ G+ V + G +GSGKS+
Sbjct: 6 SGSSNSGLVGLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSS 62
Query: 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD 1146
+ R D G I +DG++I KL L LR ++ ++ Q+P+LF+ +IR N+
Sbjct: 63 LSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC--K 120
Query: 1147 ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLL 1206
T+ + A E+A + SL G D +V E G S GQ+Q +ARA V+ IL++
Sbjct: 121 CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIM 180
Query: 1207 DEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHEN 1266
DEAT+++D +E ++Q + +RT V +AHR+STI +AD++ V+ G++VE EN
Sbjct: 181 DEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPEN 240
Query: 1267 LINIPDGFYASLIALH 1282
L+ DG +ASL+
Sbjct: 241 LLAQEDGVFASLVRTD 256
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 1e-41
Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 33/233 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S Y S V+ DL+L + G+ +AL+G SG GK+T++ L+ PD+G I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQAASEM 1158
+DG ++ + + R+ +G+V Q+ LF + T+ NIA+G +G E + +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 1159 ANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+VG GL +LSGGQ+QRVA+ARA+ ++P +LLLDE SA
Sbjct: 116 E---------------LVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
Query: 1213 LDAESERVVQDALDRVMKNR--TTVVVAHRLS-TIKNADMIAVVKNGVIVEKG 1262
LDA+ +++ L + + TT+ V H + AD IAV+ G IV+ G
Sbjct: 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 2e-41
Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 28/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IELR + S+ R + G + + G A++G SGSGKST++ LI P +GEV
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRV 494
LIDG + L E +L +R+++G++ Q LF ++ +N+A+ + V
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 495 AT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
E D P +LSGG K+R+A+ARA+ DP +LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYP-----------AELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 553 LDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
LD + V+ + + + + T+++V H L T AD IAV++ GKIV +GT
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 2e-41
Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 27/240 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++SF Y +P + DL+ I G+ ++G +GSGKST++ L P +G +
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYGK---------GGDATEAEI 1152
LDG +I L K L +++ V Q P F T+ + G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+ A E+ + D LSGG++QRV IARA+ ++ ILLLDE TS
Sbjct: 120 EEALELLGLEHLA---DRPVDE--------LSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 1213 LDAESERVVQDALDRVMK--NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLIN 1269
LD + V + L + + T V+V H L+ + AD + ++K+G IV +G E ++
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 4e-41
Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 31/246 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL++V + + S+S+ G ++G+SG+GKST+I I P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIR 493
VL+DG + L +L+ R++IG++ Q L + ++ +N+A G A EE R
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEE-R 120
Query: 494 VAT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
V EL D P QLSGGQKQR+ IARA+ +P++LL DEATS
Sbjct: 121 VLELLELVGLEDKADAYP-----------AQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Query: 552 ALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606
ALD E+ + + L I NR T V++ H + V+ D +AV+ +G++VE+GT +
Sbjct: 170 ALDPETTQSILALLRDI--NRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
Query: 607 LVEDPE 612
+ +P+
Sbjct: 228 VFANPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 6e-41
Identities = 70/275 (25%), Positives = 134/275 (48%), Gaps = 3/275 (1%)
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
+L + + G ++ LL+ +++ + + A++ +A+G LL
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
Y G ++ +R+ +++ + +S+FD +S G + +RL+ D + +R +GD
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDT--NSVGELTSRLTNDVSKIRDGLGDK 118
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEE 900
L Q+++T G I+ F W+L L++L +LPL+ + K ++ + + Y +
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 901 ASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960
A VA +++ IRTV +F EE ++ Y K E K GI++ + +G FG + + +
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLS 238
Query: 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG 995
YA + + GA LV G + VF F SL + G
Sbjct: 239 YALALWFGAYLVISGGLSVGTVF-AFLSLGLQLSG 272
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 7e-41
Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 29/238 (12%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+E+ ++S +P+ V+ D++ I+ G+T+ LVGESGSGKST+ + P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPV-----------LFNDTIRANIAYGKGGDA 1147
I DG ++ KL K R+++ +V Q+P+ + +R + K
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 1148 TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207
EA + + + + +LSGGQ+QRVAIARA+ +PK+L+ D
Sbjct: 122 KEAVLLLLVGVGLPEEVL-----------NRYPHELSGGQRQRVAIARALALNPKLLIAD 170
Query: 1208 EATSALDAESERVVQDALD--RVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
E TSALD + + D L + T + + H L + AD +AV+ G IVE+G
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 34/240 (14%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E++++ S+P + S SI G T LVG+SGSGKST+ I P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 443 VLIDG---INLKEFQLQWIRKKIGLVSQEPV-----LFTGSIKDNIA-----YGKDDATT 489
++ DG + L + RK+I +V Q+P+ T I + IA +GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMT--IGEQIAEPLRIHGKLSKKE 119
Query: 490 EEIRVATELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
L + +++ P +LSGGQ+QR+AIARA+ +P++L+
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLI 168
Query: 546 LDEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
DE TSALD + + + L ++ + T + + H L V AD +AV++ GKIVE+G
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-40
Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
IE+RD+ Y ++ ++ I AL+G SG GKST++ + R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 437 DP-----QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-----K 484
D GEVL+DG N+ + + +R+++G+V Q+P F SI DN+AYG
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 485 DDATTEEIRVATELANAA-----KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
D +EI V + L AA K D+L + LSGGQ+QR+ IARA+
Sbjct: 118 KDKELDEI-VESSLKKAALWDEVK--DRL--------HKSALGLSGGQQQRLCIARALAV 166
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
P +LL+DE TSALD S ++E + + T VIV H + R +D A + G++
Sbjct: 167 KPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
Query: 599 VEKGTHSKLVEDPE 612
VE G K+ +P+
Sbjct: 227 VEFGPTDKIFTNPK 240
|
Length = 253 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 33/210 (15%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+E+ +VS Y V D++L + G+ VALVG SG GKST++ ++ P +G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KGGDATEAEIQAASE 1157
+ +DG + G V Q+ L T+ N+A G +G EA +A
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1158 MANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
+ +VG G QLSGG +QRVA+ARA+ DP +LLLDE S
Sbjct: 116 LE---------------LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160
Query: 1212 ALDAESERVVQDALDRVM-KNRTTVV-VAH 1239
ALDA + +Q+ L + + TV+ V H
Sbjct: 161 ALDALTREQLQEELLDIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 3e-40
Identities = 84/244 (34%), Positives = 129/244 (52%), Gaps = 34/244 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S + D +V + ++L + G+ V ++G SGSGKST++ L +PD+G I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1103 TLDGVEI-QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQAAS 1156
T+DG ++ K + LR+++G+V Q+ LF + T+ N+ K EA +A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 1157 EMAN---AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
+ A K D QLSGGQ+QRVAIARA+ DPK++L DE TSAL
Sbjct: 120 LLEKVGLADKA--------DAYPA----QLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 1214 DAESERVVQDALDRVMKN-----RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267
D E V + LD VMK+ T ++V H + + AD + + G I+E+G E
Sbjct: 168 DPEL---VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Query: 1268 INIP 1271
+ P
Sbjct: 224 FDNP 227
|
Length = 240 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 5e-40
Identities = 69/237 (29%), Positives = 124/237 (52%), Gaps = 25/237 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +++ KY D ++ ++ G+ L+G +G+GK+T++ +L P +G I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI-----AYGKGGDATEAEIQAAS 1156
+ G ++ K + +R+++G V QEP L+ + T+R N+ YG + E I+
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
E+ L+ + V LSGG KQR++IA A++ DP++L+LDE TS LD E
Sbjct: 122 ELFG-------LEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 1217 SERVVQDALDRVMKNR--TTVVVA-HRLSTI-KNADMIAVVKNGVIVEKGKHENLIN 1269
S R + + L R + T++++ H L + D + ++ +G I+ +G E L
Sbjct: 171 SRREIWELL-RELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 26/229 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL+ + +Y + + S+++ G AL+G SG GK+T++ LI P +GE+
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV--AT 496
LIDG ++ + R+ IG+V Q+ LF ++ +NIA+G RV
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL +++ P +LSGGQ+QR+A+ARA+ ++P +LLLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYP-----------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 557 SEKVVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
+ ++E L + TT+ V H + AD IAV++ G+IV+ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 5e-39
Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 25/241 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++ F YP + S+ I G L+G +GSGKST++ L+ P +GEV
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 444 LIDGINLKEFQLQW-IRKKIGLVSQEPV--LFTGSIKDNIAYG------KDDATTEEIRV 494
L+DG++ + +R+K+GLV Q P LF +++D +A+G + E +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A EL + +D+ P LSGGQKQR+AIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 555 AESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + + E L ++ +T +IV H L V AD + V+ GKI+ G +++ D
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 612 E 612
E
Sbjct: 231 E 231
|
Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-38
Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 29/243 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S YP+ + +D++L I G+ VAL+G SG+GKST++ L +P +G +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1103 TLDGVEIQKLQLKWLRQ---QMGLVSQEPVLFND-TIRANIAYGKGGDA----------T 1148
+DG +I KL+ K LRQ Q+G++ Q+ L ++ N+ G+ G
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 1149 EAEIQAASEMANAHKFICSLQQ-GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207
+ E Q A +L++ G +R QLSGGQ+QRVAIARA+++ PK++L D
Sbjct: 119 KEEKQRALA---------ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILAD 169
Query: 1208 EATSALDAESERVVQDALDRV--MKNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKH 1264
E ++LD S R V D L R+ + T +V H++ + AD I +K+G IV G
Sbjct: 170 EPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP 229
Query: 1265 ENL 1267
L
Sbjct: 230 AEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 82/261 (31%), Positives = 136/261 (52%), Gaps = 26/261 (9%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+IE ++V +S ++I S+ G +VG SG+GKST+I LI R DP G
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+LIDG+++K + +R+KIG+V Q+P LF G++KDNI YG + + V L+
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + + LSGG+ QR++IAR + +P +LLLDE TSALD S ++++
Sbjct: 120 LNKEYATRDVK--------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 563 EALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
E + ++ +N T + + H + R D A +++G +VE +P+ ++L
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231
Query: 620 RLQEANKESEQTIDGQRKSEI 640
I G+ K E+
Sbjct: 232 ------------IQGKLKEEV 240
|
Length = 241 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 21/241 (8%)
Query: 1043 IELHHVSFKYPSRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ + ++S Y +++L+I G+T+ +VGESGSGKST+ LL P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1102 ITLDGVEIQKLQ-LKWLRQQMGLVSQEPVL-FND--TIRANIA---YGKGGDATEAEIQA 1154
I LDG + + K + + +V Q+P N T+ ++ G ++ I
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+ L + R +LSGGQ+QR+AIARA++ +PK+L+LDE TSALD
Sbjct: 124 LLDQVG-------LPPSFLD---RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 1215 AESERVVQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
+ + + L + K R T + ++H L+ +++ D IAV+ NG IVE G E L++ P
Sbjct: 174 VSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHP 233
Query: 1272 D 1272
Sbjct: 234 S 234
|
Length = 252 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 48/220 (21%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL++V Y + + + S++I +G AL+G SGSGKST++ I +P +G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN 500
LIDG +L E +L +R++IG+V Q+ LF ++ +NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
LSGGQ+QR+A+ARA+ DP +LLLDE TSALD + +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 561 VQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597
V+ L + + T V+V H L AD + V+ GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-38
Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 30/224 (13%)
Query: 384 IELRDVYFSYPARPNEQ--IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I + D F++ + E ++ + G A+VG GSGKS+++S + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL-------LG 53
Query: 442 EV-LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
E+ + G + I VSQEP + G+I++NI +GK D+ E++ A L
Sbjct: 54 ELEKLSG------SVSVP-GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL 106
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES- 557
++ LP G T +GE G LSGGQKQRI++ARA+ D I LLD+ SA+DA
Sbjct: 107 E---PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 558 ----EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
E + L + N+T ++V H+L + +AD I V+ G+
Sbjct: 164 RHIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-38
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 20/230 (8%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
K +E+ +VS + D D++L I+ G+ V L+G SG GK+T++ ++ F P +
Sbjct: 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYGK--GGDATEAEI-QAA 1155
G I LDG +I + + ++ +G+V Q LF + T+ N+A+G +AEI
Sbjct: 60 GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
E L+ D QLSGGQ+QRVA+ARA+V +PK+LLLDE SALDA
Sbjct: 118 EEALELVG----LEGFADRKPH----QLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 1216 ESERVVQDALDRVMKNR--TTVVVAH-RLSTIKNADMIAVVKNGVIVEKG 1262
+ ++ L + + T V V H + + +D IAV+ +G I + G
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219
|
Length = 352 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-38
Identities = 79/238 (33%), Positives = 126/238 (52%), Gaps = 29/238 (12%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
IEL +VS Y V+ +D+NL+I AG+ VA+VG SGSGKST ++ L + P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1099 AGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFND-TIRANIA-----YGKGGDAT 1148
+G + ++G ++ KL K L R+++G V Q L D T+ N+ GK
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 1149 EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDE 1208
+ + E+ D ++ ++ +LSGGQ+QRVAIARA++ +PKI+L DE
Sbjct: 119 KRAAEELLEVLG----------LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE 168
Query: 1209 ATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKH 1264
T LD+++ + V + L + K +T ++V H K AD + +K+G I E+
Sbjct: 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEEELD 226
|
Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-38
Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E+R+V +Y S+S+ G ALVG SG GKST++ +I P +GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG---KDDATTEEIRVATEL 498
VL+DG + G V Q+ L ++ DN+A G + E A EL
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 499 ANA---AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ F + P QLSGG +QR+A+ARA+ DP +LLLDE SALDA
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 556 ESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVI--HRGKIVE 600
+ + +QE L I +T ++V H + V AD + V+ G+IV
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-38
Identities = 80/230 (34%), Positives = 124/230 (53%), Gaps = 31/230 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ + V + ++L ++ G+ V ++G SGSGKST++ + +PD+G I
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQAA 1155
+DG+++ K + LRQ++G+V Q+ LF + T+ NI KG EAE
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE---- 113
Query: 1156 SEMANAHKFICSLQQ-GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
A + L++ G QLSGGQ+QRVAIARA+ +PK++L DE TSALD
Sbjct: 114 ---ERALEL---LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
Query: 1215 AESERVVQDALDRVMKN-----RTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258
E +V + LD VMK+ T VVV H + + AD + + +G I
Sbjct: 168 PE---LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 6e-38
Identities = 80/238 (33%), Positives = 137/238 (57%), Gaps = 5/238 (2%)
Query: 1040 KGEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
+G +E + +Y R D+ V R +N+ I G+ V +VG +G+GKS++ L R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
G I +DG+ I K+ L LR ++ ++ Q+PVLF+ ++R N+ ++ E+ A E+
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL--DPFSQYSDEEVWWALEL 1397
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
A+ F+ +L D E G LS GQ+Q V +ARA+++ KIL+LDEAT+A+D E++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 1219 RVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276
++Q + ++ T + +AHRL+TI + + V+ G + E G NL+ FY+
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYS 1515
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 6e-38
Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 47/218 (21%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S +Y + D++L + G+ L+G +G+GK+T++ ++ PD+G I
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+ G +I+K + +++++G + +EP L
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSL-------------------------------- 84
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
Y+ + L+LSGG KQR+A+A+A++ DP++L+LDE TS LD ES R
Sbjct: 85 ---------YENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 1223 DALDRVMKNRTTVVVA-HRLSTIKN-ADMIAVVKNGVI 1258
+ L + K T++++ H L + D +A++ NG I
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 7e-38
Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 38/255 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+R+V S+ + S+ I G L+G SG GK+T++ +I F P +GE+
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG-----KDDATTEEIRV--A 495
L+DG ++ + ++ IG+V Q LF ++++N+A+G K + RV A
Sbjct: 63 LLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL F D+ P QLSGGQ+QR+A+ARA++ +P++LLLDE SALDA
Sbjct: 121 LELVGLEGFADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 556 ESEKVVQEALDRIMVNR--TTVIVAHRLS---TVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ + +++ L + T V V H + +D IAV++ G+I + GT
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAM--SDRIAVMNDGRIEQVGT------- 220
Query: 611 PEGAYSQLIRLQEAN 625
PE Y + A+
Sbjct: 221 PEEIYERPATRFVAD 235
|
Length = 352 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 8e-38
Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 24/266 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R++ Y ++ G S + G L+G +G+GK+T++ ++ P +GE+
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY------GKDDATTEEIRVAT 496
L+ G ++ + + +R++IG V QEP L+ ++++N+ + + E I
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL +K + LSGG KQR++IA A+L DP +L+LDE TS LD E
Sbjct: 122 ELFGLEDKANKKVRT-----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
S + + E L + T ++ H L D + +++ GKI+ +GT +L E G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 614 AYSQLIRLQEANKESEQTIDGQRKSE 639
+ + K E
Sbjct: 231 KGVIELEPERLELAELLEGLKLVKGE 256
|
Length = 293 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 8e-38
Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 27/236 (11%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIRKK 461
S + G T LVG+SGSGKST+ ++ P +G ++ DG ++L +L+ +R++
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR 368
Query: 462 IGLVSQEPVLFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG- 517
I +V Q+P ++ D +A E +R+ + A + + LVG
Sbjct: 369 IQMVFQDPYSSLNPRMTVGDILA--------EPLRIHGGGSGAER--RARVAELLELVGL 418
Query: 518 --EHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
E +LSGGQ+QR+AIARA+ +P++L+LDE SALD + V L +
Sbjct: 419 PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 572 R--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624
T + ++H L+ VR AD +AV++ G+IVE+G K+ E+P+ Y++ +L A
Sbjct: 479 LGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTR--KLLAA 532
|
Length = 539 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 9e-38
Identities = 82/254 (32%), Positives = 129/254 (50%), Gaps = 36/254 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VS +Y ++ D+NL I G+ + L+G SGSGK+T + ++ R +P +G I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQA-ASE 1157
+DG +I L LR+++G V Q+ LF + T+ NIA G D + I+ A E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD--KERIKKRADE 116
Query: 1158 MANAHKFICSLQQGYDTMVG--ERGL------QLSGGQKQRVAIARAIVKDPKILLLDEA 1209
+ + +VG +LSGGQ+QRV +ARA+ DP ILL+DE
Sbjct: 117 LLD--------------LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162
Query: 1210 TSALDAESERVVQDALDRVMKN--RTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHEN 1266
ALD + + +Q+ + + K +T V V H + +K AD IAV+ G IV+ +
Sbjct: 163 FGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDE 222
Query: 1267 LINIP-DGFYASLI 1279
++ P + F
Sbjct: 223 ILANPANDFVEDFF 236
|
Length = 309 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-37
Identities = 78/239 (32%), Positives = 121/239 (50%), Gaps = 26/239 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE ++SF+YP +D++L+I G+ V L+G +GSGKST++ LL P +G +
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1103 TLDGVEIQKLQLKW-LRQQMGLVSQEPV--LFNDTIRANIAYGKGGDATEAEIQAASEMA 1159
+DG++ + LRQ++GLV Q P LF T+ +A+G E E+
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE-----EIE 116
Query: 1160 NAHKFICSLQQGYDTMVGERGLQ------LSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
+VG L LSGGQKQRVAIA + P+ILLLDE T+ L
Sbjct: 117 ERVAEAL-------ELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169
Query: 1214 DAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
D + R + + L ++ + +T ++V H L + AD + V+ +G I+ G + N
Sbjct: 170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 1e-37
Identities = 89/281 (31%), Positives = 158/281 (56%), Gaps = 26/281 (9%)
Query: 382 GDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G I+ DV Y RP + G S IS +VG++G+GKS++++ + R + +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGK-DDATTEEIRVATEL 498
G +LIDG ++ +F L +RK +G++ Q PVLF+G+++ N+ + + +DA E + E
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWE---SLER 1350
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+ I + G+D V E G S GQ+Q +++ARA+L+ +IL+LDEAT+A+D ++
Sbjct: 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
++Q+ + + T +I+AHRL+T+ + D I V+ G++VE T L+ + A+S++
Sbjct: 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
Query: 619 IR---------LQ---------EANKESEQTIDGQRKSEIS 641
++ L+ +E + +DGQRK S
Sbjct: 1471 VQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLAS 1511
|
Length = 1622 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 3e-37
Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 35/244 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ S+ ++++ G S+S+ G ++G SGSGKST++ + +P +G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 444 LIDGIN-LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG--------KDDATTEEIR 493
+DG + + + +R+K+G+V Q+ LF ++ +N+ K +A E
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA--REK- 116
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + ++K+ G+ + QLSGGQ+QR+AIARA+ DP+++L DE TSAL
Sbjct: 117 -------ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 554 DAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
D E V E LD +M + T +IV H + R AD + + +GKI+E+G +
Sbjct: 168 DPEL---VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Query: 608 VEDP 611
++P
Sbjct: 224 FDNP 227
|
Length = 240 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-37
Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 61/215 (28%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++SF+Y R +++L ++AG+ VALVG +GSGKST++ + P +G I
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163
+DG +I KL L+ +R I Y
Sbjct: 58 IDGKDIAKLPLE------------------ELRRRIGYV--------------------- 78
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
QLSGGQ+QRVA+ARA++ +P +LLLDE TS LD S + +
Sbjct: 79 -----------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121
Query: 1224 ALDR-VMKNRTTVVVAHRLSTIKNA-DMIAVVKNG 1256
L + RT ++V H + A D + V+K+G
Sbjct: 122 LLRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-37
Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IE+ ++ Y ++ ++ I AL+G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 439 QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
G+VL DG ++ K+ + +R+++G+V Q+P F SI DNIAYG KD +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
EI V L AA L + + + LSGGQ+QR+ IARA+ +P +LLLDE T
Sbjct: 119 EI-VEESLKKAA-----LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVE 609
SALD + ++E + + T VIV H + R +D A + G++VE G ++
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232
Query: 610 DPE 612
+P+
Sbjct: 233 NPK 235
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 4e-37
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 26/233 (11%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL++V Y + + ++ I +G A+VG SGSGKST+++L+ P +GE
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 443 VLIDGIN---LKEFQLQWIR-KKIGLVSQE-PVLFTGSIKDNI---AYGKDDATTEEIRV 494
VLI+G + L E +L +R KKIG V Q +L ++ +N+ + R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 495 ATELAN----AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
A EL + + K P ++LSGGQ+QR+AIARA++ +P+I+L DE T
Sbjct: 122 AEELLEVLGLEDRLLKKKP-----------SELSGGQQQRVAIARALINNPKIILADEPT 170
Query: 551 SALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
LD+++ K V E L + +T ++V H + AD + + GKI E+
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 6e-37
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 28/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ F Y +P I S SI G ++G +GSGKST++ + P++GEV
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK----------DDATTEEI 492
L+DG ++ + + KK+ V Q P G ++ + + G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A EL D+ +D LSGG++QR+ IARA+ ++ ILLLDE TS
Sbjct: 120 EEALELLGLEHLADR---PVDE--------LSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 553 LDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
LD + V E L + T V+V H L+ R AD + ++ GKIV +GT
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 6e-37
Identities = 81/230 (35%), Positives = 114/230 (49%), Gaps = 26/230 (11%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
IEL ++S Y + VQ + ++L I G+ VA+VG SGSGKST ++ L R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1099 AGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEA 1150
+G + +DG +I KL K L R+ +G V Q L D T N+ G E
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
+A + L + +LSGGQ+QRVAIARA+ DPKI+L DE T
Sbjct: 118 RERAEELLERVG-----LGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPT 168
Query: 1211 SALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKNADMIAVVKNGVI 1258
LD+E+ + V + L + K T VVV H + AD I +++G I
Sbjct: 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-36
Identities = 81/251 (32%), Positives = 132/251 (52%), Gaps = 42/251 (16%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ V+ + R + ++L + G+ +A++G SGSGKST++ L+ PD G I
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAYG--KGGDATEAEIQAAS 1156
+DG +I +L +L +R++MG++ Q+ LF+ T+ N+A+ + E+ I+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 1157 EMANAHKFICSLQQGYDTMVGERGL-------QLSGGQKQRVAIARAIVKDPKILLLDEA 1209
M L+ +VG RG +LSGG ++RVA+ARAI DP++L LDE
Sbjct: 126 LMK--------LE-----LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 1210 TSALDAESERV-------VQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261
TS LD S V + DAL T ++V H L ++ AD +AV+ +G ++ +
Sbjct: 173 TSGLDPISAGVIDELIRELNDALG-----LTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 1262 GKHENLINIPD 1272
G E L+ D
Sbjct: 228 GTPEELLASDD 238
|
Length = 263 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-36
Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 26/249 (10%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E+EL +V + +V +D+NL I G+ V L+G SG GKST++ ++ +P +G
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-----KGGDATEAEIQAA 1155
I +DG ++ L + ++ + +V Q L+ + T+ NIA+G + ++
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+++ L+ ++ + LQLSGGQ+QRVA+ARA+V+ PK+ LLDE S LDA
Sbjct: 118 AKL-------LGLEH----LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1216 ESERVVQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272
+ +++ + ++ + TT+ V H AD I V+ +G I + G L P
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226
Query: 1273 G-FYASLIA 1280
F A I
Sbjct: 227 NLFVAGFIG 235
|
Length = 338 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 34/244 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL++V S+ + ++ ++ I G L+G SG GKST++ +I +P +GE+
Sbjct: 4 LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG------KDDATTEEIRVAT 496
LIDG ++ + + ++ I +V Q L+ ++ +NIA+G + ++
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+L +++ P QLSGGQ+QR+A+ARA+++ P++ LLDE S LDA+
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 557 SE----KVVQEALDRIMVNRTTVIVAHRL---STVRNADMIAVIHRGKIVEKGTHSKLVE 609
+++ +R+ TT+ V H T+ AD I V++ G+I + GT +L E
Sbjct: 168 LRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYE 223
Query: 610 DPEG 613
P
Sbjct: 224 RPAN 227
|
Length = 338 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 72/212 (33%), Positives = 127/212 (59%), Gaps = 1/212 (0%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
I G + G++GSGKS++ R D G+++IDGI++ + L +R ++ ++ Q+
Sbjct: 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P+LF+GSI+ N+ T + + A E+A + LP G+D +V E G S GQ+
Sbjct: 104 PILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
Q +ARA ++ IL++DEAT+++D +E ++Q+ + +RT V +AHR+ST+ +AD
Sbjct: 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDAD 222
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
++ V+ RG +VE T L+ +G ++ L+R
Sbjct: 223 LVLVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-36
Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 45/222 (20%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++S Y R V DL+L I AG+ V ++G +G+GKST++ L P +G I
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163
LDG ++ L K L +++ V Q A E+
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ----------------------------ALELLGLAH 89
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
+ ++ LSGG++QRV +ARA+ ++P ILLLDE TS LD + + +
Sbjct: 90 L---ADRPFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 1224 ALDRVMK--NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKG 1262
L R+ + +T V+V H L+ + AD + ++K+G IV +G
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 4e-36
Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 26/224 (11%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
D++L +R G+ ++G SGSGKST++ + R +P +G + +DG +I + K LR+
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMV 1176
++ +V Q L + T+ N+A+G E+Q + +L+ V
Sbjct: 101 RKKISMVFQSFALLPHRTVLENVAFG-------LEVQGVPRAEREERAAEALEL-----V 148
Query: 1177 GERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK 1230
G G +LSGG +QRV +ARA+ DP ILL+DEA SALD R +QD L R+
Sbjct: 149 GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 1231 N--RTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIP 1271
+T V + H L ++ D IA++K+G +V+ G E ++ P
Sbjct: 209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 5e-36
Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 30/243 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V Y + +++I G L+G SGSGK+T + +I R +P +GE+
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
LIDG ++ + +R+KIG V Q+ LF ++ +NIA G D ++ A E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR--ADE 116
Query: 498 LA-----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
L + +++ D+ P +LSGGQ+QR+ +ARA+ DP ILL+DE A
Sbjct: 117 LLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGA 165
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVE 609
LD + K +QE + + + +T V V H + ++ AD IAV+ G+IV+ T +++
Sbjct: 166 LDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
Query: 610 DPE 612
+P
Sbjct: 226 NPA 228
|
Length = 309 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 7e-36
Identities = 78/239 (32%), Positives = 127/239 (53%), Gaps = 27/239 (11%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLK 1115
V+ D++ +R G+T+ LVGESGSGKST+ +L P +G I DG ++ +L+
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 1116 WLRQQMGLVSQEPVLFND---TIRANIAY--GKGGDATEAEIQAASEMANAHKFICSLQQ 1170
LR+++ +V Q+P + T+ +A G + AE +A +A + +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRAR--VAELLELVG---- 417
Query: 1171 GYDTMVGERGL-----QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDAL 1225
+ L +LSGGQ+QRVAIARA+ +PK+L+LDE SALD + V + L
Sbjct: 418 -----LPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLL 472
Query: 1226 DRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYA-SLIA 1280
+ + T + ++H L+ ++ AD +AV+ +G IVE+G E + P Y L+A
Sbjct: 473 KDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531
|
Length = 539 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 8e-36
Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 29/243 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S YP Q +D+NL+I G+ VA++G SG+GKST++ L DP +G I
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDA----------T 1148
+GV+I KL +L+ LR+ +G++ Q+ L ++ N+ G+ G +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 1149 EAEIQAASEMANAHKFICSLQQ-GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207
+ + A + +L++ G +R LSGGQ+QRVAIARA+V+ PKI+L D
Sbjct: 122 KEDKAQA---------LDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILAD 172
Query: 1208 EATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKH 1264
E ++LD ES + V D L + + T +V H++ K AD I +K G IV G
Sbjct: 173 EPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232
Query: 1265 ENL 1267
L
Sbjct: 233 SEL 235
|
Length = 258 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 8e-36
Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 9/232 (3%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V Y + + ++ I+ G L+G SGSGK+T + +I R +P +GE+
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
IDG +++E +R+KIG V Q+ LF ++++NIA + ++
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ P + +LSGGQ+QR+ +ARA+ DP +LL+DE ALD + +Q
Sbjct: 119 ALVGLDPA---EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 563 EALDRI--MVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
E R+ + +T V V H + R AD IA++ G+IV+ GT +++ P
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 28/245 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
IE+ +++ Y + + +++NL I + AL+G SG GKST++ L R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1098 DAGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG--KGGDATEAEIQ 1153
G + DG +I +K+ + LR+++G+V Q+P F +I NIAYG G + E+
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 1154 AASEMANAHKFICSLQQG--YDTMVGER----GLQLSGGQKQRVAIARAIVKDPKILLLD 1207
E SL++ +D V +R L LSGGQ+QR+ IARA+ +P++LLLD
Sbjct: 119 EIVEE--------SLKKAALWDE-VKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD 169
Query: 1208 EATSALDAESERVVQDALDRVMKNRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHEN 1266
E TSALD + +++ + + K T V+V H + + +D A +G +VE G E
Sbjct: 170 EPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229
Query: 1267 LINIP 1271
+ P
Sbjct: 230 IFTNP 234
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 2e-35
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 35/209 (16%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ VS + V D+NL + G+ VA++G SG GKST++ L+ P +G +
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KGGDATEAEIQAASEM 1158
LDG + +G V QE L T+ N+A G +G EA +A +
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 1159 ANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+VG G QLSGG +QRVAIARA+ PK+LLLDE A
Sbjct: 116 E---------------LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160
Query: 1213 LDAESERVVQDALDRVMK--NRTTVVVAH 1239
LDA + +QD L R+ + +T ++V H
Sbjct: 161 LDALTREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 22/231 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I +++V ++ + D++L I++G+ VAL+G SG+GKST++ ++ PDAG
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 1102 ITLDGVEIQKLQLKWLRQ-QMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQA-A 1155
I L+G + + +R ++G V Q LF + T+ NIA+G + +EAEI+A
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 1156 SEMANAHKFICSLQQGYDTMVGER-GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
E+ + L+ + +R QLSGGQ+QRVA+ARA+ +PK+LLLDE ALD
Sbjct: 119 EELLR----LVQLEG-----LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 169
Query: 1215 AESERVVQDALDRVMKNR--TTVVVAHRLS-TIKNADMIAVVKNGVIVEKG 1262
A+ + ++ L ++ TTV V H ++ AD + V+ G I + G
Sbjct: 170 AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220
|
Length = 345 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-35
Identities = 77/245 (31%), Positives = 127/245 (51%), Gaps = 17/245 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+ +Y + +LNL+I G+ + L+G SGSGK+T + ++ R +P +G I
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQAASEM 1158
+DG +I++ LR+++G V Q+ LF + T+ NIA + +A +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
A Y +LSGGQ+QRV +ARA+ DP +LL+DE ALD +
Sbjct: 119 ALVGLDPAEFADRYPH-------ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 1219 RVVQDALDRVMK--NRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP-DGF 1274
+Q+ R+ + +T V V H + + AD IA++KNG IV+ G + ++ P + F
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
Query: 1275 YASLI 1279
A +
Sbjct: 232 VAEFV 236
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 4e-35
Identities = 77/231 (33%), Positives = 140/231 (60%), Gaps = 6/231 (2%)
Query: 381 RGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
RG +E R+ Y R + + + +++I G +VG++G+GKS++ + R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGKDDATTEEIRVATEL 498
GE++IDG+N+ + L +R KI ++ Q+PVLF+GS++ N+ + + + EE+ A EL
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ--YSDEEVWWALEL 1397
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+ F+ LP +D E G LS GQ+Q + +ARA+L+ +IL+LDEAT+A+D E++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
++Q + + T + +AHRL+T+ + + V+ +G++ E G S L++
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 4e-35
Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 19/226 (8%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQ 439
IEL+++ +Y + Q G S+SI G A+VG SGSGKST ++ ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 440 AGEVLIDGIN---LKEFQLQWIR-KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRV 494
+GEV +DG + L E +L R + IG V Q L + +N+ +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPK 114
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A + ++++ G+ + + ++LSGGQ+QR+AIARA+ DP+I+L DE T LD
Sbjct: 115 KERRERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 555 AESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+E+ K V E L + T V+V H AD I + GKI
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-35
Identities = 83/234 (35%), Positives = 128/234 (54%), Gaps = 27/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R V S+ R I G + + G A++G SGSGKST++ LI P GE+
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
LIDG + L E +L IRK++G++ Q+ LF+ ++ +N+A+ + T + EL
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 500 NAAKFIDKLPQGIDTLVGEHG-------TQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
+ KL LVG G ++LSGG ++R+A+ARAI DP +L LDE TS
Sbjct: 126 -----LMKL-----ELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
LD S V+ E + + + T ++V H L ++ AD +AV+ GK++ +GT
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 5e-35
Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 27/238 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++S YP+ Q +++NL I G+ VA++G SG+GKST++ + R +P +G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1103 TLDGVEIQKLQ---LKWLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDA----------T 1148
L+G +I KL+ L+ LR+++G++ Q L T+ N+ +G+ G +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1149 EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDE 1208
E + + A + G +R QLSGGQ+QRVAIARA+ + P ++L DE
Sbjct: 120 EEDKERALS--------ALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 1209 ATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
++LD ++ + V D L R+ K T ++ H++ K AD I +K G IV G
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 6e-35
Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 32/257 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ +R++ Y + S+ I G T +VG+SGSGKST+ L+ P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 443 VLIDGINLKEFQ-LQWIRKKIGLVSQEPVLFTGS------IKDNIA-----YGKDDATTE 490
+L+DG L + + + + +V Q+P S + ++ +G +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDP---YSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ ++ F+D+ P +LSGGQ+QRIAIARA++ +P++L+LDE T
Sbjct: 121 IAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 551 SALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
SALD + + L + R T + ++H L+ V + D IAV+ G+IVE G +L
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229
Query: 608 VEDPEGAYSQLIRLQEA 624
+ P Y++ L EA
Sbjct: 230 LSHPSHPYTRE--LLEA 244
|
Length = 252 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 6e-35
Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 48/218 (22%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R++ Y + S+++ G L+G +G+GK+T+I +I P +GE+
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
+ G ++K+ + ++++IG + +EP L+ ++++N+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+LSGG KQR+A+A+A+L DP +L+LDE TS LD ES +
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 563 EALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKI 598
E L + T++++ H L D +A+++ G+I
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-34
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 44/221 (19%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ ++ Y R + S+SI +G ++G +G+GKST++ + P +GE+L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
+DG +L + + +KI V Q A EL A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
D+ + LSGG++QR+ +ARA+ ++P ILLLDE TS LD + + E
Sbjct: 91 ADR---PFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 565 LDRI--MVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
L R+ +T V+V H L+ R AD + ++ G+IV +G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ V S+ + ++S+ G A++G SG GKST++ LI P +GEV
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
L+DG + IG V QE L ++ DN+A G E +
Sbjct: 61 LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL A F DK P QLSGG +QR+AIARA+ P++LLLDE ALDA
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 557 SEKVVQEALDRIM--VNRTTVIVAH 579
+ + +Q+ L R+ +T ++V H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-34
Identities = 78/215 (36%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE H+VS YP V D++L IR G+ + L G SG+GK+T++ LL P G +
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIAY-----GKGGDATEAEIQ 1153
+ G ++ +L QL LR+++G+V Q+ +L + T+ N+A GK + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1154 AASEMAN-AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
AA HK +Q LSGG++QRVAIARAIV P +LL DE T
Sbjct: 120 AALRQVGLEHKADAFPEQ------------LSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 1213 LDAESERVVQDALDRVMKNRTTVVVA-HRLSTIKN 1246
LD + + D L R+ K TTV+VA H LS +
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 3e-34
Identities = 77/239 (32%), Positives = 134/239 (56%), Gaps = 22/239 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ +V FSYP N S I+ G A++G +GSGKST+ ++ PQ+GE+
Sbjct: 8 IKVENVSFSYPNSEN-NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGS-IKDNIAYGKDDA--TTEEIR-VATEL 498
IDGI + + L+ IRKKIG++ Q P F G+ ++D+IA+G ++ ++++ + +L
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 499 ANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A ++DK PQ LSGGQKQR+AIA + +P I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 556 ESEKVVQEALDRIMVNRT-TVI-VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++ +++ + + R T+I + H + AD + V GK++ +G +++ + E
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
|
Length = 271 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 4e-34
Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 23/237 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
EIE VS+ S ++ +D+++K G +VG SG+GKST++ L+ R DP G
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG---KGGDATEAEIQAASEM 1158
I +DGV+I+ + + LR+++G+V Q+P LF T++ NI YG KG + E +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS--- 116
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
I L + Y T LSGG+ QRV+IAR + +P++LLLDE TSALD S
Sbjct: 117 ------IVGLNKEYAT---RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
Query: 1219 RVVQDALDRVMKNR---TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
++++ + + +KN+ T + + H + K D A + G++VE K + P
Sbjct: 168 EIIEELIVK-LKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223
|
Length = 241 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 6e-34
Identities = 85/264 (32%), Positives = 150/264 (56%), Gaps = 15/264 (5%)
Query: 1026 IDPSDESGTILEDVK--------GEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVAL 1076
ID E+ ++E+ + G I+ V +Y RP++ V L+ +I + V +
Sbjct: 1213 IDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGI 1270
Query: 1077 VGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136
VG +G+GKS++++ L R + + G I +DG +I K L LR+ +G++ Q PVLF+ T+R
Sbjct: 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330
Query: 1137 ANI-AYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195
N+ + + DA ++ + E A+ I G D V E G S GQ+Q +++AR
Sbjct: 1331 FNLDPFNEHNDA---DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLAR 1387
Query: 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKN 1255
A+++ KIL+LDEAT+A+D ++ ++Q + K+ T +++AHRL+TI + D I V+
Sbjct: 1388 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDA 1447
Query: 1256 GVIVEKGKHENLINIPDGFYASLI 1279
G +VE ENL++ ++ ++
Sbjct: 1448 GRVVEFDTPENLLSNEGSAFSKMV 1471
|
Length = 1622 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-33
Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 42/250 (16%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST----VVSLLQRFYDPDAGHIT 1103
V F V RD++ ++ G+ + +VGESGSGKST ++ LL +G +
Sbjct: 13 VEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 1104 LDGVEIQKLQLKWLRQQMG----LVSQEPV-LFN------DTIRANIAYGKGGDATEAEI 1152
LDG ++ L + +R+ G ++ Q+P+ N D IR + G EA
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARK 131
Query: 1153 QAASEMANAHKFICSLQQGYDTMVG--ERGL------QLSGGQKQRVAIARAIVKDPKIL 1204
+A + VG + QLSGG +QRV IA A+ PK+L
Sbjct: 132 RAVELLE---------------QVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLL 176
Query: 1205 LLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261
+ DE T+ALD ++ + D L + + + + H L + AD + V+ G IVE
Sbjct: 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236
Query: 1262 GKHENLINIP 1271
G E +++ P
Sbjct: 237 GPTEEILSNP 246
|
Length = 539 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-33
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 60/215 (27%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ ++ F Y R S+++ +G ALVG +GSGKST++ I P +GE+L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
IDG ++ + L+ + + I Y
Sbjct: 58 IDGKDIAKLPLEEL------------------RRRIGY---------------------- 77
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
+PQ LSGGQ+QR+A+ARA+L +P +LLLDE TS LD S + + E
Sbjct: 78 ---VPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 565 LDRIMV-NRTTVIVAHRLSTVRNA-DMIAVIHRGK 597
L + RT +IV H A D + V+ GK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 38/233 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+++++ S+ + + G +++ G ++G SGSGKST++ I +P +G +
Sbjct: 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY------GKDDATTEEIRV 494
+IDG + + + +R+K+G+V Q+ LF ++ +NI G A EE
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-- 115
Query: 495 ATEL---ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A EL A D P QLSGGQ+QR+AIARA+ +P+++L DE TS
Sbjct: 116 ALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTS 164
Query: 552 ALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
ALD E +V E LD +M + T V+V H + R AD + + G+I
Sbjct: 165 ALDPE---LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-33
Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 25/224 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIR-KK 461
S+ + G ++G SGSGKST++ I R +P +G+VLIDG + +L+ +R KK
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 462 IGLVSQEPVLFTG-SIKDNIAYG---KDDATTEEIRVATE---LANAAKFIDKLPQGIDT 514
I +V Q L ++ +N+A+G + E A E L + K P
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---- 159
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
+LSGG +QR+ +ARA+ DP ILL+DEA SALD + +Q+ L R+ + +
Sbjct: 160 -------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK 212
Query: 573 TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
T V + H L +R D IA++ G++V+ GT +++ +P Y
Sbjct: 213 TIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY 256
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-33
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 28/239 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + + F YP S S+ G A+VG +GSGKST+ L+ P+AG +
Sbjct: 6 IRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGS-IKDNIAYGKD------DATTEEIRVA 495
+ G+ L E + +R+++G+V Q P F G+ ++D++A+G + + E + A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
F+++ P +LSGGQKQR+AIA + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 556 ESEKVVQEALD--RIMVN--RTTVI-VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
+E L+ R + TV+ + H L AD + V+++G+I+E+GT ++ +
Sbjct: 174 RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-33
Identities = 76/243 (31%), Positives = 143/243 (58%), Gaps = 8/243 (3%)
Query: 381 RGDIELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
RG I+ DV+ Y P P + G S +S +VG++G+GKS++++ + R + +
Sbjct: 1232 RGSIKFEDVHLRYRPGLP--PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA--YGKDDATTEEIRVATE 497
G ++ID ++ +F L +R+ + ++ Q PVLF+G+++ NI +DA E A E
Sbjct: 1290 KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE---ALE 1346
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A+ ID+ P G+D V E G S GQ+Q +++ARA+L+ +IL+LDEAT+++D +
Sbjct: 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ ++Q + + T +++AHRL+T+ + D I V+ G+++E + +L+ A+ +
Sbjct: 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
Query: 618 LIR 620
++
Sbjct: 1467 MVH 1469
|
Length = 1495 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-33
Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 54/248 (21%)
Query: 1043 IELHHVSFKYP-SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IEL ++S +P + +++L I AG+ ++G SG+GKST++ + P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFN----DTIRANIAY-----GKGGDATE 1149
+ +DG ++ L +L+ R+Q+G++ Q FN T+ N+A G +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQH---FNLLSSRTVFDNVALPLELAGT----PK 114
Query: 1150 AEIQAA----------SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199
AEI+A S+ A+ Y QLSGGQKQRVAIARA+
Sbjct: 115 AEIKARVTELLELVGLSDKADR----------YPA-------QLSGGQKQRVAIARALAS 157
Query: 1200 DPKILLLDEATSALDAESERVVQDALDRVMKNR----TTVVVAHRLSTIKN-ADMIAVVK 1254
+PK+LL DEATSALD + R + + L + NR T V++ H + +K D +AV+
Sbjct: 158 NPKVLLCDEATSALDPATTRSILELLKDI--NRELGLTIVLITHEMDVVKRICDRVAVID 215
Query: 1255 NGVIVEKG 1262
G +VE+G
Sbjct: 216 AGRLVEQG 223
|
Length = 343 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 82/251 (32%), Positives = 119/251 (47%), Gaps = 34/251 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL +VS Y ++L I+ G+ L+G SG GK+T++ L+ F P +G I
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQAAS 1156
LDG +I L ++ + V Q LF T+ NIA+G + + A
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 1157 EMAN----AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
++ A++ QLSGGQ+QRVAIARA+V +PK+LLLDE A
Sbjct: 116 DLVQLEGYANRKPS---------------QLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
Query: 1213 LDAESERVVQDALDRVMKNR--TTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLIN 1269
LD + + +Q L R+ K T V V H + +D IAV+ G I + G E +
Sbjct: 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220
Query: 1270 IP-DGFYASLI 1279
P + F A I
Sbjct: 221 EPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-33
Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 33/277 (11%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-- 439
+E+++ V F A + G S + G +VG+SGSGKS + I
Sbjct: 2 LEVKNLSVSFPTDAGVV-KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 440 ---AGEVLIDGINL---KEFQLQWIR-KKIGLVSQEPV-----LFTGSIKDNIA-----Y 482
GE+L DG +L E +L+ IR K+I ++ Q+P+ + T I D IA +
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT--IGDQIAEVLRLH 118
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
GK + E A EL D + + + +LSGG +QR+ IA A+ +P+
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDP-----ERRLKSYPHELSGGMRQRVMIAMALALNPK 173
Query: 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTT--VIVAHRLSTVRN-ADMIAVIHRGKIV 599
+L+ DE T+ALD + + + L + + T +++ H L V AD +AV++ G+IV
Sbjct: 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233
Query: 600 EKGTHSKLVEDPEGAYSQ-LIRLQEANKESEQTIDGQ 635
E+G ++ ++P+ Y++ L+ E I G
Sbjct: 234 EEGPVEEIFKNPKHPYTRGLLNSLPRLGERLPPIPGS 270
|
Length = 316 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-33
Identities = 81/251 (32%), Positives = 124/251 (49%), Gaps = 27/251 (10%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
IE+ ++ Y D +D+NL I K AL+G SG GKST++ L R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 1096 DPD-----AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG-KGGDA 1147
D G + LDG I K+ + LR+++G+V Q+P F +I N+AYG +
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 1148 TEAEIQAASEMANAHKFICSLQQG--YDTMVGER----GLQLSGGQKQRVAIARAIVKDP 1201
+ E+ E SL++ +D V +R L LSGGQ+QR+ IARA+ P
Sbjct: 118 KDKELDEIVES--------SLKKAALWDE-VKDRLHKSALGLSGGQQQRLCIARALAVKP 168
Query: 1202 KILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLS-TIKNADMIAVVKNGVIVE 1260
++LL+DE TSALD S +++ + + K T V+V H + + +D A G +VE
Sbjct: 169 EVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228
Query: 1261 KGKHENLINIP 1271
G + + P
Sbjct: 229 FGPTDKIFTNP 239
|
Length = 253 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 3e-33
Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 31/237 (13%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL+++ +P + S+ I +G ++G SG+GKST+I I P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATEL 498
VL+DG + L E +L+ R++IG++ Q L + ++ DN+A EL
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL------------PLEL 109
Query: 499 ANAAK-FIDKLPQGIDTLVG--EHG----TQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A K I + LVG + QLSGGQKQR+AIARA+ +P++LL DEATS
Sbjct: 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 552 ALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
ALD + + + E L I NR T V++ H + V+ D +AVI G++VE+GT
Sbjct: 170 ALDPATTRSILELLKDI--NRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-33
Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 11/210 (5%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+ + G ++G +GSGKS ++ I F P +G++L++G ++ L ++ I V
Sbjct: 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISYV 76
Query: 466 SQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524
Q LF ++ NIAYG ++ + ++ A+ + GID L+ LS
Sbjct: 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKPETLS 131
Query: 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI-VAHRLS 582
GG++QR+AIARA++ +P+ILLLDE SALD +++ ++E L +I TV+ V H
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 583 TVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
AD +A++ GK+++ G ++ + P
Sbjct: 192 EAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-33
Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 15/233 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I++ +VSF YP+ + ++++ +I G+ VA++G +GSGKST+ +L P +G I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+DG+ I K LK +R+++G++ Q P T+ +IA+G E + +M
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG-----LENKKVPPKKM-- 119
Query: 1161 AHKFICSLQQ--GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
I L + G + + + LSGGQKQRVAIA + +P+I++ DE+TS LD + +
Sbjct: 120 -KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 1219 RVVQDALDRVMKNRTTVVVA--HRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
R ++ + + K R +++ H + AD + V G ++ +GK + ++N
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
|
Length = 271 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 6e-33
Identities = 71/215 (33%), Positives = 118/215 (54%), Gaps = 14/215 (6%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
++++L++ G ++G +GSGKS ++ + F PD+G I L+G +I L ++ +
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73
Query: 1122 GLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGER 1179
V Q LF + T+ NIAYG K + EI+ ++ + + G D ++ +
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER--KVLEIAEML-----GIDHLLNRK 126
Query: 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVV--V 1237
LSGG++QRVAIARA+V +PKILLLDE SALD ++ +++ L ++ K V V
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186
Query: 1238 AHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
H AD +A++ NG +++ GK E + P
Sbjct: 187 THDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 7e-33
Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 43/253 (16%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-----AGH 1101
VSF + V+ ++ +++ G+ + +VGESGSGKS + + G
Sbjct: 8 SVSFPTDAGV-VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 1102 ITLDGVEIQKLQLKWLRQ----QMGLVSQEPVL-FN------DTIRANIAYGKGGDATEA 1150
I DG ++ L K LR+ ++ ++ Q+P+ N D I + G + +
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKE 126
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVG----ERGL-----QLSGGQKQRVAIARAIVKDP 1201
+ A E+ +VG ER L +LSGG +QRV IA A+ +P
Sbjct: 127 AKERAIELLE--------------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172
Query: 1202 KILLLDEATSALDAESERVVQDALDRVMKNRTT--VVVAHRLSTIKN-ADMIAVVKNGVI 1258
K+L+ DE T+ALD + + D L + + + T +++ H L + AD +AV+ G I
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232
Query: 1259 VEKGKHENLINIP 1271
VE+G E + P
Sbjct: 233 VEEGPVEEIFKNP 245
|
Length = 316 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 20/211 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQLQWIRKKIGLVSQE 468
A++G SG GK+T++ I R D G++ G ++ + + RKK+G+V Q+
Sbjct: 33 AIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQK 92
Query: 469 PVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
P F SI DN+A+G K + I V L AA + D++ ++ + GT+
Sbjct: 93 PTPFPMSIYDNVAFGPRIHGVKSKHKLDRI-VEESLKKAALW-DEVKSELN----KPGTR 146
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQ+QR+ IARA+ +P ++LLDE TSALD + + +++ L+ + N T VIV H +
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG 206
Query: 583 -TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+R AD IA ++RG+++E G ++VE P+
Sbjct: 207 QAIRIADYIAFMYRGELIEYGPTREIVERPK 237
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 32/239 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I +VS YP + RD++ I G+ V L G SG+GKST++ L+ P G I
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQ 1153
++G ++ +L ++ +LR+Q+G+V Q+ L D T+ N+A GK +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 1154 AASEMAN-AHKFICSLQQGYDTMVGERGL--QLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
++ HK R L QLSGG++QRVAIARAIV P +LL DE T
Sbjct: 120 EVLDLVGLKHK--------------ARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165
Query: 1211 SALDAESERVVQDALDRVMKNRTTVVVA-HRLSTI--KNADMIAVVKNGVIVEKGKHEN 1266
LD + + + + + TTV++A H L + ++A +++G +V
Sbjct: 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA-LEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 4e-32
Identities = 82/252 (32%), Positives = 124/252 (49%), Gaps = 27/252 (10%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
++ I++R++ F Y ++ I+ A +G SG GKST++ R
Sbjct: 6 MVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62
Query: 436 YD--PQ---AGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG----- 483
Y+ P+ GE+L+DG N+ + + +R K+G+V Q+P F SI DNIA+G
Sbjct: 63 YELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE 122
Query: 484 KDDATTEEIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
K + RV L AA + DKL Q G LSGGQ+QR+ IAR I
Sbjct: 123 KLSRAEMDERVEWALTKAALWNEVKDKLHQS--------GYSLSGGQQQRLCIARGIAIR 174
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIV 599
P +LLLDE SALD S ++E + + + T VIV H + R +D A ++ G+++
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234
Query: 600 EKGTHSKLVEDP 611
E G + P
Sbjct: 235 EFGNTDTIFTKP 246
|
Length = 260 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-32
Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 20/221 (9%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
D +L + G+ ++G SGSGKST+V LL R +P G I +DG +I KL LR+
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQAASEMANAHKFICSLQQGYD 1173
++ +V Q L + T+ N+A+G +G E E +A + L+ D
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV-----GLEGYAD 159
Query: 1174 TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN-- 1231
+LSGG +QRV +ARA+ DP ILL+DEA SALD +QD L +
Sbjct: 160 KYPN----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 1232 RTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIP 1271
+T V + H L ++ D IA++K+G IV+ G E ++ P
Sbjct: 216 KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 7e-32
Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 39/232 (16%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++ Y P V D++ +++ G+ +A+VG +G+GKST++ + P +G I
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQE-------PVLFNDTIRANIAYGKG--GDATEAEIQA 1154
+ G ++K R+++G V Q P+ D + + KG ++A+
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDE 1208
E A + VG L +LSGGQ+QRV +ARA+V+DP +LLLDE
Sbjct: 113 VDE---ALE-----------RVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158
Query: 1209 ATSALDAESERVVQDALDRV-MKNRTTVVVAHRLSTI-KNADMIAVVKNGVI 1258
+ +D +++ + + L + + T +VV H L + + D + ++ V+
Sbjct: 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-31
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 22/233 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ Y S+ VQ RD++ + G+ L+GE+G+GK+T++ ++ PD+G +
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAAS 1156
T+DGV+ + ++R+++G++ E L+ T R N+ Y G +A I S
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+ L + D VGE S G KQ+VAIARA+V DP IL+LDE TS LD
Sbjct: 119 KRLQ-------LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIR 167
Query: 1217 SERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267
+ R D + ++ + R + +H + ++ D + V+ G +V +G E L
Sbjct: 168 TRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 90/248 (36%), Positives = 125/248 (50%), Gaps = 23/248 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 440
I+ RDV F Y + G S+ I + A +G SG GKST + L R D P
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 441 --GEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ IDG N+ K Q+ +RK +G+V Q P F SI +N+AYG KD+A
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ RV L AA L + + E LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 121 Q-RVEETLKGAA-----LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S V+E + + + T VIV H + R +D A + G++VE K+
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234
Query: 610 DPEGAYSQ 617
+PE +Q
Sbjct: 235 NPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 4e-31
Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 23/244 (9%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---- 437
G I ++D+ Y + Q ++ I AL+G SG GKST + + R D
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 438 -PQAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDAT 488
GEVL+DG ++ + + +RK++G+V Q+P F SI DN+AYG KD
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
+EI V L AA + D++ + + LSGGQ+QR+ IARA+ +P +LL+DE
Sbjct: 119 LDEI-VEKSLKGAALW-DEVKDRLK----KSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 549 ATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKL 607
TSALD S ++E + + + T VIV H + R +D A G+IVE G L
Sbjct: 173 PTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
Query: 608 VEDP 611
+P
Sbjct: 233 FTNP 236
|
Length = 250 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 4e-31
Identities = 84/248 (33%), Positives = 126/248 (50%), Gaps = 28/248 (11%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--P 1097
G+I + + Y D Q + +NL I + AL+G SG GKST + L R D P
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 1098 DA---GHITLDGVEIQKLQLKW--LRQQMGLVSQEPVLFNDTIRANIAYGK--GGDATEA 1150
G + LDG +I K + LR+++G+V Q+P F +I N+AYG G +
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKK 117
Query: 1151 EIQAASEMANAHKFICSLQQG--YDTMVGER----GLQLSGGQKQRVAIARAIVKDPKIL 1204
++ E SL+ +D V +R L LSGGQ+QR+ IARA+ +P++L
Sbjct: 118 KLDEIVEK--------SLKGAALWDE-VKDRLKKSALGLSGGQQQRLCIARALAVEPEVL 168
Query: 1205 LLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGK 1263
L+DE TSALD S +++ + + K+ T V+V H + + +D A NG IVE G
Sbjct: 169 LMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228
Query: 1264 HENLINIP 1271
+L P
Sbjct: 229 TVDLFTNP 236
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 5e-31
Identities = 83/241 (34%), Positives = 124/241 (51%), Gaps = 20/241 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IE RD+ Y +EQ S+ I A++G SG GKST + I R D
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 439 QAGEVLIDGINLKEFQLQ--WIRKKIGLVSQEPVLFTGSIKDNIAYG---KDDATTEEIR 493
GE+ G N+ + + +R++IG+V Q+P F SI DN+AYG + + R
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
V L AA + D++ +D G LSGGQ+QR+ IARAI DP ++L+DE SAL
Sbjct: 157 VEESLRRAALW-DEVKDQLD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211
Query: 554 DAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAV-IHRGKIVEKGTHSKLVEDP 611
D + +++ ++ + T VIV H + R +D AV + G++VE K+ E+P
Sbjct: 212 DPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENP 271
Query: 612 E 612
E
Sbjct: 272 E 272
|
Length = 285 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-31
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 57/248 (22%)
Query: 384 IELRDVYFSYPARPNEQ------IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
+E++++ +P G S SI G T LVG+SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 438 PQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493
P +GE+L +G ++ KE + + + + + V
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPE------------------------ 100
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
+F+ + P H +LSGGQ+QRI IARA+ +P++++ DE SAL
Sbjct: 101 ---------EFLYRYP---------H--ELSGGQRQRIGIARALALNPKLIVADEPVSAL 140
Query: 554 DAESE-KVVQEALD-RIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
D + +++ D + + T + ++H LS VR +D IAV++ GKIVE G ++ +
Sbjct: 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
Query: 611 PEGAYSQL 618
P Y++
Sbjct: 201 PLHPYTKA 208
|
Length = 268 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 8e-31
Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 29/219 (13%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
L ++S K+ + + DLNL I GK A++GESGSGKST+++++ D+G + L
Sbjct: 1 LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 1105 DGVEIQKLQ----LKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASEM 1158
+G E L K+ R+++G + Q L N+T+ N+ G K ++ E +
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKR----- 112
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQ------LSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
K +L++ VG LSGG++QRVA+ARAI+K P ++L DE T +
Sbjct: 113 ---EKKKEALEK-----VGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGS 164
Query: 1213 LDAESERVVQDALDRVMK-NRTTVVVAHRLSTIKNADMI 1250
LD ++ V D L + +T ++V H K AD +
Sbjct: 165 LDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 8e-31
Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 24/225 (10%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116
Q D+NL++ G VAL+G SGSGKST++ ++ PD+G I L+G + ++ +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 1117 LRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
+++G V Q LF T+R NIA+G EI+ + + L+ +
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFG-------LEIRKHPKAKIKARVEELLE-----L 117
Query: 1176 VGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
V GL QLSGGQ+QRVA+ARA+ +P++LLLDE ALDA+ + ++ L ++
Sbjct: 118 VQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLH 177
Query: 1230 K--NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIP 1271
+ TTV V H ++ AD I V+ NG I + G + + + P
Sbjct: 178 DEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 9e-31
Identities = 63/227 (27%), Positives = 121/227 (53%), Gaps = 23/227 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +++ +Y + + ++L + G L+G +G+GK+T++ +L P +G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG---KGGDATE--AEIQAAS 1156
+DG ++ K Q + LR+++G + QE ++ N T+R + Y KG + E A +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
E+ N L +G LSGG ++RV IA+A+V DP IL++DE T+ LD E
Sbjct: 116 ELVN-------LGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 1217 SERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
++ L + ++R ++ H + +++ + +AV+ G +V +G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 30/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IEL +V Y G S+ I G L+G SG GK+T++ LI F P +GE+
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
L+DG ++ L ++ + V Q LF ++ +NIA+G E + A
Sbjct: 58 LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+L + ++ P QLSGGQ+QR+AIARA++ +P++LLLDE ALD +
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLS---TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
K +Q L R+ + T V V H T+ +D IAV+++GKI + GT ++ E+P
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTM--SDRIAVMNKGKIQQIGTPEEIYEEP 222
Query: 612 E 612
Sbjct: 223 A 223
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ D++F Y + + G S+SI G+ AL+G +G+GKST++ + Y PQ G V
Sbjct: 5 IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVA 495
+ G + +W+R K+GLV Q+P +F+ ++ D++A+G D + A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ F DK P LS GQK+R+AIA + DP +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
++ + E LDR+ TVIVA H + AD + V+ G+++ +G S L ++
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 81/246 (32%), Positives = 119/246 (48%), Gaps = 29/246 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
+E+R++ Y +Q S+ I A +G SG GKST++ R D
Sbjct: 26 LEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 439 QAGEVLIDG--INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ +DG I K+ + +R+++G+V Q P F SI +N+ YG + +
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 491 EIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
E V L AA + D+L E+ LSGGQ+QR+ IARAI +P +LLLD
Sbjct: 143 EA-VERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSK 606
E TSALD S ++E + + T VIV H + R +D A ++ GK+VE G
Sbjct: 194 EPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253
Query: 607 LVEDPE 612
L P
Sbjct: 254 LFTSPA 259
|
Length = 272 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-30
Identities = 80/233 (34%), Positives = 110/233 (47%), Gaps = 27/233 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDG--INL 450
E I G + AL+G SGSGKST + + R D G++L G IN
Sbjct: 33 KEAIK-GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA-- 502
KE + +RK IG+V Q P F SI +NI + KD +EI V T L AA
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALW 150
Query: 503 -KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+ D L + LSGGQ+QR+ IARAI P ILL+DE SALD S +
Sbjct: 151 DQVKDDL--------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL 202
Query: 562 QEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
+E + + N T +IV H + R +D A + G ++E + +P+
Sbjct: 203 EETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKL 255
|
Length = 267 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 34/234 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+ YP +N+ I AG+ V LVG SG+GKST++ L+ + P +G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIAY-----GKGGDATEAEIQ 1153
++G ++ L + +LR+++G+V Q+ +L + + N+A+ G +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1154 AASEMAN-AHKFICSLQQGYDTMVGERGL--QLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
AA E+ +HK R L +LSGG++QRVAIARAIV P IL+ DE T
Sbjct: 119 AALELVGLSHK--------------HRALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164
Query: 1211 SALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIV-EKGK 1263
LD ++ + + L ++ K TTVVVA +++ ++ VI E+GK
Sbjct: 165 GNLDPDTTWEIMNLLKKINKAGTTVVVA-----THAKELVDTTRHRVIALERGK 213
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+ +++ Y +RP V D++L + G+ AL+G +G+GKST++ + P +G
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 1102 ITLDGVEIQKLQLKWLR-----QQMGLVSQEPVLFNDTIRANIAYGKGG------DATEA 1150
I + G ++K + K LR Q+ + P+ D + YGK G +
Sbjct: 61 IKIFGKPVRK-RRKRLRIGYVPQKSSVDRSFPITVKDVVLLG-RYGKKGWFRRLNKKDKE 118
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
++ A E D +GE LSGGQKQRV +ARA+ ++P +LLLDE
Sbjct: 119 KVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 1211 SALDAESERVVQDALDR-VMKNRTTVVVAHRLST-IKNADMIAVVKNGVI 1258
+ +D ++ + D L + +T ++V H L + D + + +I
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-30
Identities = 88/305 (28%), Positives = 161/305 (52%), Gaps = 18/305 (5%)
Query: 974 DGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033
+ +A F+ + S T+ ++ S +A A S+ ++ + ID E+
Sbjct: 1163 ENQAGFASTMGLLLSYTLNI-----TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEAT 1217
Query: 1034 TILED--------VKGEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGK 1084
I+E+ +G I+ V +Y RP + V L+ + + V +VG +G+GK
Sbjct: 1218 AIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGK 1275
Query: 1085 STVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG 1144
S++++ L R + + G I +D ++ K L LR+ + ++ Q PVLF+ T+R NI
Sbjct: 1276 SSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI--DPF 1333
Query: 1145 GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKIL 1204
+ +A++ A E A+ I G D V E G S GQ+Q +++ARA+++ KIL
Sbjct: 1334 SEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKIL 1393
Query: 1205 LLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKH 1264
+LDEAT+++D ++ ++Q + K+ T +V+AHRL+TI + D I V+ +G ++E
Sbjct: 1394 VLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSP 1453
Query: 1265 ENLIN 1269
+ L++
Sbjct: 1454 QELLS 1458
|
Length = 1495 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-30
Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 15/222 (6%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
Q ++ + +G+ AL+G SGSGKST++ +I P +G + ++G + +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--D 71
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTLV 516
+KIG V Q LF +++DNIA+G EIR + A+ +++L + ++ L
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGL------EIRKHPKAKIKAR-VEELLELVQLEGLG 124
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTT 574
+ QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+ K ++ L ++ V+ TT
Sbjct: 125 DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT 184
Query: 575 VIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
V V H AD I V+ GKI + G+ ++ + P +
Sbjct: 185 VFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 3e-30
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
+ ++ FSY + +I S+ + +G AL G++G+GK+T+ ++ +G +L
Sbjct: 1 RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
++G +K + RK IG V Q+ LFT S+++ + G + + T L
Sbjct: 59 LNGKPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVL---- 111
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
L + L H LSGGQKQR+AIA A+L +L+ DE TS LD ++ + V
Sbjct: 112 ---KDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 563 EALDRIMVNRTTVIVA 578
E + + VIV
Sbjct: 167 ELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 66/246 (26%)
Query: 1043 IELHHVSFKYPSR------PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ ++ +P V+ ++ I+ G+T+ LVGESG GKST+ L+ +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1097 PDAGHITLDGVEIQKL----QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152
P +G I +G +I KL + + + + + V R
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY---R---------------- 105
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
H+ SGGQ+QR+ IARA+ +PK+++ DE SA
Sbjct: 106 -------YPHEL-------------------SGGQRQRIGIARALALNPKLIVADEPVSA 139
Query: 1213 LDAESERVVQDALDRVMK------NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHE 1265
LD VQ + ++K T + ++H LS ++ +D IAV+ G IVE G E
Sbjct: 140 LDV----SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTE 195
Query: 1266 NLINIP 1271
+ + P
Sbjct: 196 EVFSNP 201
|
Length = 268 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 30/247 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 440
+ RDV Y + +F + I T A +G SG GKST + + R D
Sbjct: 20 MRARDVSVFYGE--KQALF-DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76
Query: 441 --GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-------KDDATT 489
G++ +DG ++ + +L + R ++G+V Q+P F SI +N+AYG + A
Sbjct: 77 VTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Query: 490 EEIRVATELANAAKF---IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
+EI V T L A + D+L E GT LSGGQ+QR+ IARAI P ++L+
Sbjct: 137 DEI-VETSLRKAGLWEEVKDRL--------HEPGTGLSGGQQQRLCIARAIAVSPEVILM 187
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHS 605
DE SALD + V+E +D + N T VIV H + R + A H G +VE G
Sbjct: 188 DEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247
Query: 606 KLVEDPE 612
K+ +P+
Sbjct: 248 KMFTNPD 254
|
Length = 267 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 5e-30
Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 17/225 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +V+ ++ + DLNL I G+ V L+G SG GK+T + ++ +P +G I
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASEMAN 1160
+ G ++ L K + + +V Q L+ + T+ NIA+G K + EI
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREV- 114
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
A + ++ + QLSGGQ+QRVA+ RAIV++PK+ L+DE S LDA+
Sbjct: 115 AELL------QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ 168
Query: 1221 VQDALDRVMKN--RTTVVVAH-RLSTIKNADMIAVVKNGVIVEKG 1262
++ L R+ + TT+ V H ++ + AD IAV+ +G I + G
Sbjct: 169 MRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-30
Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 25/224 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWI-RKK 461
++I+ G ++G SGSGKST + ++ R +P AG++ IDG N+ + +L+ + RKK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 462 IGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDT 514
IG+V Q+ LF +I N + G + E+ +L ++ + P
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---- 128
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNR 572
+LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L ++ + +
Sbjct: 129 -------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 573 TTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
T V + H L +R D I ++ G+IV+ GT +++ +P Y
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 8e-30
Identities = 74/245 (30%), Positives = 130/245 (53%), Gaps = 28/245 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ ++ +YP ++ S+SI+ G AL+G SG+GKST++ + +P +G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 444 LIDGI---NLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT---------- 489
LIDG LK L+ +R++IG++ Q+ L S+ +N+ G+ +
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 490 -EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
EE + A ++++ G+ + QLSGGQ+QR+AIARA+++ P+++L DE
Sbjct: 119 KEEKQRALAA------LERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 549 ATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605
++LD S + V + L RI T ++ H++ R AD I + G+IV G +
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
Query: 606 KLVED 610
+L ++
Sbjct: 231 ELTDE 235
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-30
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 36/249 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ +YP Q ++ I+ G A++G SG+GKST++ + DP +GE+
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTGSIKD-----NIAYGKDDATT------ 489
L +G LK +L+ +R+ IG++ Q+ L + N+ G+ T+
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNL----VPRLSVLENVLLGRLGYTSTWRSLF 117
Query: 490 -----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544
E+ A + +DK Q T LSGGQ+QR+AIARA+++ P+I+
Sbjct: 118 GLFSKEDKAQALDALERVGILDKAYQRAST--------LSGGQQQRVAIARALVQQPKII 169
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
L DE ++LD ES K V + L I T ++ H++ + AD I + G+IV
Sbjct: 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229
Query: 602 GTHSKLVED 610
G S+L ++
Sbjct: 230 GPASELTDE 238
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-29
Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 21/230 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + +V + A S+ I SG AL+G SG+GKST++ +I P AG +
Sbjct: 3 IRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 444 LIDGINLKEFQLQWIRK-KIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV-AT 496
++G L + +R K+G V Q LF ++ DNIA+G K+ + EIR
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL + ++ L + QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+
Sbjct: 120 ELLRLVQ--------LEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171
Query: 557 SEKVVQEALDRIM--VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
K ++ L ++ + TTV V H + AD + V+++G+I + G
Sbjct: 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 2e-29
Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWL-R 1118
D +L I G+ ++G SGSGKST V +L R +P AG I +DG I K +L+ + R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ-GYDTMV 1176
+++G+V Q+ LF + TI N + G E+ E K + L+ G +
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLG-------PELLGWPEQERKEKALELLKLVGLEEYE 123
Query: 1177 GERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN--RTT 1234
+LSGG +QRV +ARA+ +P ILL+DEA SALD +QD L ++ +T
Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 1235 VVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP 1271
V + H L I+ D I ++K G IV+ G + ++ P
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 2e-29
Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 27/230 (11%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQL 455
+Q ++ I AL+G SG GKST + R D A G V I+G ++K +
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYG---------KDDATTEEIRVATELANAAKF-- 504
+RK +G+V Q+P +F SI +NI+Y KD+ EE V L F
Sbjct: 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDE---EEALVVDCLQKVGLFEE 131
Query: 505 -IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DKL Q + LSGGQ+QR+ IARA+ P++LLLDE TSALD S V++E
Sbjct: 132 VKDKLKQ--------NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE 183
Query: 564 ALDRIMVNRTTVIVAHRLST-VRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
L + N + ++V H + R AD A H G+++E G + E+P+
Sbjct: 184 LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233
|
Length = 246 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-29
Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 58/287 (20%)
Query: 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFS 406
FG A K+ +D +K +IL + + D S
Sbjct: 14 FGKNPKRALKL---------LDQGKSKAEILKKTGLVVGVNDA----------------S 48
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--------LKEFQLQWI 458
+ + G ++G SGSGKST++ L+ R +P GE+L+DG + L+E +
Sbjct: 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR---- 104
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEI-RVATELANAAKFIDKLPQG 511
RKKI +V Q L ++ +N+A+ G A EE A EL + DK P
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-- 162
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--M 569
+LSGG +QR+ +ARA+ DP ILL+DEA SALD +Q+ L +
Sbjct: 163 ---------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 570 VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ +T V + H L +R D IA++ G+IV+ GT +++ +P Y
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY 260
|
Length = 386 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 36/232 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ ++ SY RP + S+S+ G AL+G +G+GKST++ I P +GE+
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA------------YGKDDAT 488
I G +++ + R +IG V Q+ + F ++KD + K D
Sbjct: 62 KIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-- 116
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
E++ A E D+ +GE LSGGQKQR+ +ARA+ ++P +LLLDE
Sbjct: 117 KEKVDEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDE 165
Query: 549 ATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598
+ +D +K + + L + +T ++V H L V D + ++R I
Sbjct: 166 PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 402 FSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
F++ I + + G SG+GKST++ I P G ++++G L + + +
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 459 ----RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513
++KIGLV Q+ LF ++++N+A+G E R++ + +D L G+D
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS-----VDELLDLL--GLD 122
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VN 571
L+ + QLSGG+KQR+A+ARA+ P +LLLDE SALD + L +I +N
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 572 RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
+ V H LS AD I V+ G++ G
Sbjct: 183 IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 23/240 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+ +VS ++ + D++L I +G+ VAL+G SGSGK+T++ L+ PD+G
Sbjct: 2 SIEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQA- 1154
I G + + ++ + +G V Q LF T+ N+A+G + EAEI+A
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
E+ + + L Y QLSGGQ+QRVA+ARA+ +PK+LLLDE ALD
Sbjct: 117 VHELLKLVQ-LDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
Query: 1215 AESERVVQDALDRVMK--NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIP 1271
A+ + ++ L R+ + TTV V H ++ AD + V+ G I + G + + + P
Sbjct: 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 17/219 (7%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+ I SG AL+G SGSGK+T++ LI P +G +L G + + +Q + +G V
Sbjct: 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ--ERNVGFV 79
Query: 466 SQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ-----GIDTLVGEH 519
Q LF ++ DN+A+G ++ +E A+ K+ + +D L +
Sbjct: 80 FQHYALFRHMTVFDNVAFGL------RVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIV 577
QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+ K ++ L R+ ++ TTV V
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFV 193
Query: 578 AHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
H + AD + V+++G+I + GT ++ + P +
Sbjct: 194 THDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-29
Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 49/311 (15%)
Query: 403 SGFSISISSGTTAALVGQSGSGKST----VISLIERFYDPQAGEVLIDGIN---LKEFQL 455
S + G +VG+SGSGKST ++ L+ +GEV++DG + L E ++
Sbjct: 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM 85
Query: 456 QWIR-KKIGLVSQEPV-----LFTGSIKDNIA--------YGKDDATTEEIRV--ATELA 499
+ +R K+I ++ Q+P+ + T I D I + +A + + L
Sbjct: 86 RKLRGKRIAMIFQDPMTSLNPVMT--IGDQIREALRLHGKGSRAEARKRAVELLEQVGLP 143
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ + D+ P QLSGG +QR+ IA A+ P++L+ DE T+ALD ++
Sbjct: 144 DPER-RDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 560 VVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ + L + + + H L V AD + V+++G+IVE G +++ +P+ Y+
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYT 251
Query: 617 QLIRLQEA--NKESEQTIDGQRKSEISMESL---RHSSHRMSLRRSISRGSSIGNSSRHS 671
+ L A E+ I R+ + E L R+ S R R+ +
Sbjct: 252 R--GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRK--GLFVRERGEVKAV 307
Query: 672 ISVSFGLPSGQ 682
VSF L G+
Sbjct: 308 DDVSFDLREGE 318
|
Length = 539 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 23/205 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V +YP G +ISIS+G LVG SG+GKST++ LI + P +G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 444 LIDGI---NLKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAYGKD--DATTEEIR---- 493
++G +L+ + ++R+KIG+V Q+ +L ++ +N+A+ + EIR
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A EL + LP +LSGG++QR+AIARAI+ P IL+ DE T L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 554 DAESEKVVQEALDRIMVNRTTVIVA 578
D ++ + L +I TTV+VA
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 23/228 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +SF+Y +R D++ +R G+ VAL+G +G+GKST+ SLL R Y G I
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAAS 1156
++ G ++++ L + +G+V Q+P L D ++R N+ Y G A I
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+ G ++ +L+GG ++RV IARA++ P +LLLDE T LD
Sbjct: 118 A-----------RLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 1217 SER-VVQDALDRVMKNRTTVVVA-HRLSTIKNADMIAVVKNGVIVEKG 1262
S + +V+ A H + I+ D + V+ G ++ G
Sbjct: 167 SRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADG 214
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-29
Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 17/225 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S + + +V +L+L I G+ + L+G SG GK+TV+ L+ F PD+G I
Sbjct: 15 VELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASEMAN 1160
LDG +I + + + + V Q LF + T+ N+A+G + AEI +
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEI--TPRVME 127
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
A + + L++ + QLSGGQ+QRVAIARA+V PK+LLLDE+ SALD + +
Sbjct: 128 ALRMV-QLEE----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQ 182
Query: 1221 VQDALDRVMK--NRTTVVVAH-RLSTIKNADMIAVVKNGVIVEKG 1262
+Q+ L + + T V V H + + +D I V+++G I + G
Sbjct: 183 MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
Length = 375 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 5e-29
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 23/210 (10%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
L+G SG GK+T++ L+ F P +G +++DG ++ + I +V Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 476 IKDNIAYG----KDDATTEEIRV--ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+++N+A+G K + RV A L +F D+ P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS-TVRN 586
R+A+ARA++ P+ILLLDE SALD + +Q L I + T V V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 587 ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+D IA++ +GKI + GT ++ E+P +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 5e-29
Identities = 72/221 (32%), Positives = 121/221 (54%), Gaps = 3/221 (1%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V R ++ +I + V +VG +GSGKST++ R + G I ++G EI L+ LR+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGER 1179
Q ++ Q+PVLF+ T+R N+ +A+ AE+ AA E+ + + S +G D+ V E
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNV--DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEG 1442
Query: 1180 GLQLSGGQKQRVAIARAIVK-DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVA 1238
G S GQ+Q + +ARA++K +L+DEAT+ +D +R +Q + T + +A
Sbjct: 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIA 1502
Query: 1239 HRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
HRL T+ D I V+ +G + E G L+ + S++
Sbjct: 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-29
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 38/231 (16%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ D+ SY P + S + G A+VG +G+GKST++ I P +G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA------------YGKDDATT 489
+ G L++ RK+IG V Q + F S++D + K D
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-- 110
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
++ A E ++ D+ I +LSGGQ+QR+ +ARA+++DP +LLLDE
Sbjct: 111 AKVDEALERVGLSELADRQ---IG--------ELSGGQQQRVLLARALVQDPDLLLLDEP 159
Query: 550 TSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
+ +D ++++ + E L + T ++V H L V D + +++R +
Sbjct: 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 8e-29
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 32/216 (14%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL--KEFQLQWIRKKIG 463
+I I G L+G +GSGKST+I + P +G+++IDG+++ K+ +L IRKK+G
Sbjct: 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG 86
Query: 464 LVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVATELA--NAAKFIDKLPQGID 513
LV Q P LF +I+ +IA+G ++ ++ A + + + DK P
Sbjct: 87 LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP---- 142
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM---- 569
+LSGGQK+R+AIA + +P+IL+LDE T+ LD K E L++I
Sbjct: 143 -------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP---KGRDEILNKIKELHK 192
Query: 570 -VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT 603
N T ++V+H + V + AD I V+++GK +GT
Sbjct: 193 EYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 9e-29
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 27/232 (11%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--K 451
+QI ++ I A +G SG GKST + R D GE+ IDGI++
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
+ + +R K+G+V Q+P F SI DN+AYG LA K +D++ +
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK---------LHGLAKNKKKLDEIVEK 128
Query: 512 IDTLVG----------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
T VG + +LSGGQ+QR+ IARAI P +LL+DE SALD + V+
Sbjct: 129 SLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + N T ++V H + + +D +A G+IVE T ++ ++P+
Sbjct: 189 ENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQ 240
|
Length = 251 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-29
Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 27/241 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VS + QV +++L I G+ V ++G SGSGKST++ + + + +G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG----KGGDATEAEIQAA 1155
+DG+++ K+ + +RQ+ G+V Q+ LF T N+ +G +G EAE QA
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+A G +LSGGQ+QRVAIARA+ PK++L DE TSALD
Sbjct: 119 ELLAKV---------GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169
Query: 1216 ESE----RVVQDALDRVMKNRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINI 1270
E +V+QD + M T V+V H + K A + + G I E G + LI
Sbjct: 170 ELRHEVLKVMQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
Query: 1271 P 1271
P
Sbjct: 227 P 227
|
Length = 240 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 32/251 (12%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--K 451
+Q + ++ I AL+G SG GKST + + R D GEVL+DG N+ K
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFI 505
+ + +RK++G+V Q+P F SI DN+AYG KD ++I V L AA +
Sbjct: 77 DVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKI-VEWALKKAALWD 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
+ + + + +LSGGQ+QR+ IAR I P ++L+DE TSALD S +++ +
Sbjct: 136 E-----VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM 190
Query: 566 DRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624
+ T VIV H + R +D A G ++E K+ +P+
Sbjct: 191 VELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ------------ 238
Query: 625 NKESEQTIDGQ 635
KE+E I G+
Sbjct: 239 KKETEDYISGR 249
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 27/228 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ F Y + + S + G +++G +GSGKST + LI+ + ++G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKD------DATTEEIRVA 495
+IDG L E + IR KIG+V Q P F G +++D++A+G + + E + A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL F ++ P +LSGGQKQR+AIA A+ P+I++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 556 ESE----KVVQEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKI 598
E K ++ D + TVI + H L V +D + V+ G++
Sbjct: 174 EGRLELIKTIKGIRDD---YQMTVISITHDLDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 34/239 (14%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ L DV FSY P F +++ +G A++G SG+GKST+++LI F P +GE
Sbjct: 1 MLALDDVRFSYGHLPMR-----FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE 55
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDAT--TEEIRVATELA 499
+LI+G++ + + ++ QE LF ++ NI G E R E A
Sbjct: 56 ILINGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA 113
Query: 500 NA----AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A A F+ +LP +LSGGQ+QR+A+AR ++++ ILLLDE SALD
Sbjct: 114 AAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALD- 161
Query: 556 ESEKVVQEALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+ E L + T ++V H AD + + G+I +G+ +L+
Sbjct: 162 --PALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-28
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 426 STVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG 483
ST++ LI P +G +L+DG + + +RK+IG+V Q+P LF ++++N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 484 KD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
A E F+D+ P LSGGQKQR+AIARA+LK P+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 543 ILLLDEATS 551
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 46/256 (17%)
Query: 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG------ 441
DVY+ ++ G S+ I + AL+G SG GKST + + R D
Sbjct: 52 DVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106
Query: 442 ------EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------------ 483
++ DG+NL E +RK++G+V Q P F SI++NI+YG
Sbjct: 107 VELDGQDIYQDGVNLVE-----LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLL 161
Query: 484 -----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
+DD E+ V L AA L ++ + ++ LSGGQ+QR+ IAR +
Sbjct: 162 ARLLGRDDKDAEDELVERSLRQAA-----LWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAV-IHRG 596
DP ++L+DE SALD + +++ ++ + T V+V H + R +D AV + G
Sbjct: 217 VDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGG 276
Query: 597 KIVEKGTHSKLVEDPE 612
++VE K+ E+PE
Sbjct: 277 ELVEYDDTDKIFENPE 292
|
Length = 305 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 62/220 (28%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL ++ ++ V+ ++L +R G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG + V F DA A I
Sbjct: 58 LVDG--------------------KEVSFASPR----------DARRAGIA--------- 78
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL-DAESERVV 1221
MV QLS G++Q V IARA+ ++ ++L+LDE T+AL AE ER+
Sbjct: 79 ------------MV----YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122
Query: 1222 QDALDRVMKNRTTVV-VAHRLSTIKN-ADMIAVVKNGVIV 1259
+ R+ V+ ++HRL + AD + V+++G +V
Sbjct: 123 -KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 38/241 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +V +YP + S I G L G SG+GKST++ LI P G++
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRV 494
L++G LK ++ ++R++IG+V Q+ L ++ +N+A GK RV
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRR-RV 118
Query: 495 --ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
+L LP +QLSGG++QR+AIARAI+ P +LL DE T
Sbjct: 119 SEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 553 LDAESEKVVQEALDRIMVNR--TTVIVA-HRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
LD + + + I NR TTV++A H L V HR +E G +LV
Sbjct: 168 LDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR-----HRVLALEDG---RLVR 217
Query: 610 D 610
D
Sbjct: 218 D 218
|
Length = 223 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 30/223 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---KEFQLQWIRKKI 462
S+ + +G ++G SG+GKST+I + P +G V++DG +L +L R++I
Sbjct: 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQI 84
Query: 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID---TLVG- 517
G++ Q L + ++ N+A + EL N K D++ + + LVG
Sbjct: 85 GMIFQHFNLLSSRTVFGNVA------------LPLELDNTPK--DEIKRKVTELLALVGL 130
Query: 518 -----EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MV 570
+ + LSGGQKQR+AIARA+ +P++LL DEATSALD + + + E L I +
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 571 NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +++ H + V R D +AVI G+++E+GT S++ P+
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPK 233
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 29/249 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ + F Y AR S ++ G AL+G +G+GKST+ SL+ R Y Q G++
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
+ G +L+ + + +G+V Q+P L S++ N+ Y G A R+A
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARA-RIAEL 116
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
LA G+ + +L+GG ++R+ IARA+L P +LLLDE T LD S
Sbjct: 117 LAR---------LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Query: 558 EKVVQEALDRIMVNRTTVIV---AHRLSTVRNADMIAVIHRGKIVEKGTHSKL-----VE 609
+ + R + + V H + + D + V+HRG+++ G ++L
Sbjct: 168 RAAITAHV-RALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGA 226
Query: 610 DPEGAYSQL 618
D E A+ L
Sbjct: 227 DLEAAFLAL 235
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-28
Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 8/212 (3%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QK 1111
Q+ D+NL I + A +G SG GKST + R D P+ G + +DG+++
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
+ LR ++G+V Q+P F +I N+AYG + E+ L +
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE 138
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN 1231
+ + +LSGGQ+QR+ IARAI P +LL+DE SALD + V+++ + + KN
Sbjct: 139 LGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN 198
Query: 1232 RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
T +VV H + K +D +A ++G IVE
Sbjct: 199 FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230
|
Length = 251 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-28
Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 1085 STVVSLLQRFYDPDAGHITLDGVEIQKL-QLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
ST++ L+ P +G I LDG + L K LR+++G+V Q+P LF + T+R N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1143 KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202
+A + A E F+ E LSGGQKQRVAIARA++K PK
Sbjct: 61 LRDKEADARAEEALERVGLPDFL----------DREPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1203 ILLLDEATS 1211
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-28
Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 5/230 (2%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G + ++D+ Y N + S SIS G L+G++GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKYTEGGN-AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGKDDATTEEIRVATELAN 500
++ IDG++ LQ RK G++ Q+ +F+G+ + N+ YGK + EEI E
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
I++ P +D ++ + G LS G KQ + +AR++L +ILLLDE ++ LD + +V
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+++ L + + T ++ HR+ + VI K+ + + KL+ +
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-28
Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKEFQ 454
Q S+ AL+G SG GKST + + R D P A GE+L+DG N+ +
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79
Query: 455 LQWI--RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFID 506
+ + R+++G+V Q+P F SI +N+AYG KD A E RV L +AA
Sbjct: 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE-RVERSLRHAA---- 134
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
L + + E LSGGQ+QR+ IARA+ +P +LL+DE SALD + + ++E +
Sbjct: 135 -LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIH 193
Query: 567 RIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T +IV H + R +D+ A + GK++E G ++ P
Sbjct: 194 ELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR 240
|
Length = 253 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-28
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL +V + N ++ I+ G L+G SG GK+T + +I +P +G +
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
I G ++ + L + I +V Q L+ ++ DNIA+G + + + A
Sbjct: 58 YIGGRDVTD--LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + I+ L+ QLSGGQ+QR+A+ RAI+++P++ L+DE S LDA+ ++
Sbjct: 116 ELL-----QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 563 EALDRIM--VNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKG 602
L R+ + TT+ V H ++ + AD IAV++ G+I + G
Sbjct: 171 AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 7e-28
Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 32/241 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + S+ +++ S ++I++G L+G SG GK+TV+ LI F P +G +
Sbjct: 15 VELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT--EEI--RV--AT 496
++DG ++ + + + V Q LF ++ +N+A+G T EI RV A
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ +F + P QLSGGQ+QR+AIARA++ P++LLLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 557 SEKVVQEALDRIM--VNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
K +Q L + + T V V H L+ +D I V+ G+I + GT ++ E+
Sbjct: 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTM---SDRIVVMRDGRIEQDGTPREIYEE 235
Query: 611 P 611
P
Sbjct: 236 P 236
|
Length = 375 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 8e-28
Identities = 57/227 (25%), Positives = 114/227 (50%), Gaps = 24/227 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L ++ Y ++ G S+++ G L+G +G+GK+T++ ++ P +G +
Sbjct: 1 LQLENLTKRYG---KKRALDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATT-EEIRVAT 496
IDG ++ + Q Q +R++IG + QE ++ ++++ + Y G +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL N K LSGG ++R+ IA+A++ DP IL++DE T+ LD E
Sbjct: 116 ELVNLGDRAKKKIG-----------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ L + +R ++ H + V + + +AV+++GK+V +G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-28
Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 42/237 (17%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI--------Q 1110
V ++L+++ G+ VA++G SGSGK+T++ + P+AG I + + I Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 1111 KLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQAASEMANAHKFI 1165
K ++ LRQ +G V Q LF + T+ NI G KG EA +A +A
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAK----- 131
Query: 1166 CSLQQGYDTMVGERGLQ------LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
VG G + LSGGQ+QRVAIARA+ P+++L DE TSALD E
Sbjct: 132 ----------VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE--- 178
Query: 1220 VVQDALDRVM----KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
+V + L+ + + RT V+V H +S ++ AD + G IVE+G + L P
Sbjct: 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 9e-28
Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 25/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE- 442
+E + V F+YP + + S SI G+ AL+G +GSGKST+ LI P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 443 --VLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDD---ATTEEIRVA 495
+ +DGI L + IR+K+G+V Q P F G ++ D++A+G ++ E I++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 496 TELAN---AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++ +ID P LSGGQKQR+AIA + +P+I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 553 LDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
LD ++ + + + ++ N T + + H + AD + V+ GK++ +G+ ++
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 611 PE 612
E
Sbjct: 234 VE 235
|
Length = 282 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 9e-28
Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 19/231 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-----EVLIDGINL-KEF 453
Q ++ I + AL+G SG GKST++ + R D G ++ +DG ++
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDK 507
+ +R K+G+V Q+P F SI +N+AYG KD +E+ V L AA
Sbjct: 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAA----- 130
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
L + + H LSGGQ+QR+ IAR I +P ++L+DE TSALD + ++E ++
Sbjct: 131 LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190
Query: 568 IMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ N T VIV H + R +D A G++VE + +P+ +Q
Sbjct: 191 LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQ 241
|
Length = 249 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 19/211 (9%)
Query: 1063 DLNLKIR---AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQLK 1115
D LKI + + G SG+GKST++ + PD G I L+G + +K+ L
Sbjct: 12 DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71
Query: 1116 WLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDT 1174
++++GLV Q+ LF + +R N+A+G + + E+ + G D
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDL--------LGLDH 123
Query: 1175 MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NR 1232
++ QLSGG+KQRVA+ARA+ P++LLLDE SALD + L ++ K N
Sbjct: 124 LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 1233 TTVVVAHRLSTI-KNADMIAVVKNGVIVEKG 1262
+ V H LS AD I V+++G + G
Sbjct: 184 PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 71/216 (32%), Positives = 118/216 (54%), Gaps = 27/216 (12%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI--QKLQLKWLRQQ 1120
++N++I G+ V L+G +GSGKST++ L P +G I +DGV+I +K++L +R++
Sbjct: 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84
Query: 1121 MGLVSQEP--VLFNDTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQGYD 1173
+GLV Q P LF +TI +IA+G + E ++ A + Y+
Sbjct: 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YE 135
Query: 1174 TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--- 1230
+ +LSGGQK+RVAIA + +PKIL+LDE T+ LD + + L+++ +
Sbjct: 136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR---DEILNKIKELHK 192
Query: 1231 --NRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGK 1263
N T ++V+H + + K AD I V+ G +G
Sbjct: 193 EYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-27
Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 44/234 (18%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
+D++L ++ G+ V L+G SG GK+T++ ++ AG I G +I +L + +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQAASEMANAHKFICSLQQGYDT 1174
+ G+V Q LF N T+ NIAYG +G E + +E+ +
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-ERVAELLD-------------- 120
Query: 1175 MVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV 1228
+VG G QLSGGQ+QRVA+ARA+ P +LLLDE SALDA V++ L
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR----VREHLRTE 176
Query: 1229 MK------NRTTVVVAH----RLSTIKNADMIAVVKNGVIVEKGKHENLINIPD 1272
++ TT++V H LS AD I V+ +GVI + G + + P
Sbjct: 177 IRQLQRRLGVTTIMVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHPA 227
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-27
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 27/230 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S + V+ ++L +R G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1103 TLDGVEIQKLQLKWLRQQMG--LVSQEPVLFND-TIRANIAYG-----KGG--DATEAEI 1152
+DG + + G V QE L + ++ NI G + G D
Sbjct: 66 LIDGKPVAFSSPR-DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+A +A DT+VG+ LS Q+Q V IARA+ D ++L+LDE T+A
Sbjct: 125 RARELLARL-GLDIDP----DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 1213 LD-AESERVVQDALDRVMKNRTTVV-VAHRLSTIK-NADMIAVVKNGVIV 1259
L E+ER+ D + R+ ++ ++HRL + AD I V+++G +V
Sbjct: 176 LTVKETERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 37/267 (13%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---- 437
IE+ + YF + I ++ I + AL+G SG GKST I + R D
Sbjct: 4 IEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPG 58
Query: 438 -PQAGEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-----KDDATT 489
G + +DG+++ + + + RKK+G+V Q+P F SI DN+AYG +DD
Sbjct: 59 FRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDF 118
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
E RV L AA + D++ +D + LSGGQ+QR+ IAR I P ++L+DE
Sbjct: 119 IEERVEESLKAAALW-DEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLV 608
SALD S +++ + ++ + T VIV H + R + + G+I+E G ++
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233
Query: 609 EDPEGAYSQLIRLQEANKESEQTIDGQ 635
+P+ +K +E I G+
Sbjct: 234 INPK------------DKRTEDYITGR 248
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 27/232 (11%)
Query: 1043 IELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + H+SF+YP + ++ D++ + G+ VA+VG +GSGKST+ LL P+AG
Sbjct: 6 IRVEHISFRYPDAATYALK---DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKGGDATEAE-----IQ 1153
IT+ G+ + + + +R+Q+G+V Q P T++ ++A+G E +
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
A F L + +LSGGQKQRVAIA + P I++LDEATS L
Sbjct: 123 QALRQVGMEDF---LNR--------EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 1214 DAESERVVQDALDRVMKNRTTVVV---AHRLSTIKNADMIAVVKNGVIVEKG 1262
D R V + + R +K + + V H L AD + V+ G I+E+G
Sbjct: 172 DPRGRREVLETV-RQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 20/223 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQLQ-- 456
+ISI AL+G SG GKST++ R D G++L +G N+ +
Sbjct: 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQ 510
+R+KIG+V Q P F SI +N+AYG K+ T + I V L AA L
Sbjct: 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI-VEKSLKGAA-----LWD 137
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ + + LSGGQ+QR+ IAR + +P ++L+DE SALD + +++ ++ +
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 571 NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D ++ GK++E +++ E+P
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 16/219 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y V DL+L + G+ L+G +G+GK+T + +L P +G
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIA-YG--KGGDATEAEIQAASEM 1158
++G I+ K RQ +G Q LF++ T+R ++ Y KG +E + E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EE 113
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
+ L + LSGG K+++++A A++ P +LLLDE TS LD S
Sbjct: 114 VELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169
Query: 1219 RVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNG 1256
R + D + V K R+ ++ H + + D IA++ +G
Sbjct: 170 RAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ ++SF Y ++ DL+L + AG+ +AL G++G+GK+T+ +L +G I
Sbjct: 1 RIENISFSYKKGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG-KGGDATEAEIQAA----- 1155
L+G I+ K R+ +G V Q+ LF D++R + G K DA + +
Sbjct: 59 LNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 1156 -SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+ H LSGGQKQR+AIA A++ +L+ DE TS LD
Sbjct: 116 LYALKERHPLS-----------------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
Query: 1215 AESERVVQDALDRVMKNRTTVVVA-HRLSTIKN-ADMIAVVKNGVIV 1259
++ V + + + V+V H + D + ++ NG IV
Sbjct: 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V +YP S+ I G L G SG+GK+T++ L+ P G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAY-----GKDDATTEEIRV 494
I G + L+ QL +R++IG+V Q+ +L ++ +N+A GK + RV
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK-EREIQRRV 118
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A + + L D QLSGG++QR+AIARAI+ P +LL DE T LD
Sbjct: 119 GA----ALRQVG-LEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLD 169
Query: 555 AESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIAVIHRGKIVEKG 602
+ + + + L R+ TTVIVA H LS V V HR I++ G
Sbjct: 170 PDLSERILDLLKRLNKRGTTVIVATHDLSLVDR-----VAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-27
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 22/209 (10%)
Query: 1076 LVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDT 1134
L+G SG GK+T++ LL F PD+G I LDG ++ + + + +V Q LF + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 1135 IRANIAYG---KGGDATE--AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189
+ N+A+G + E + A + + + QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQ-----------LEEFADRKPHQLSGGQQQ 107
Query: 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLS-TIKN 1246
RVA+ARA+V PKILLLDE SALD + +Q L + + T V V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1247 ADMIAVVKNGVIVEKGKHENLINIPDGFY 1275
+D IA+++ G I + G E + P +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 70/237 (29%), Positives = 118/237 (49%), Gaps = 24/237 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ + F+Y + + L+L I G AL+G +G+GKST++ L Y P G +
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK-----GGDATEAEIQAA 1155
+ G E+ KW+R ++GLV Q+P +F+ T+ ++A+G D E ++ A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 1156 SEMANAHKFICSLQQGYDTMVGERG-LQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+ F ++ LS GQK+RVAIA + DP +++LDE + LD
Sbjct: 123 LKAVRMWDF------------RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
Query: 1215 AESERVVQDALDRVMKNRTTVVVA-HRLS-TIKNADMIAVVKNGVIVEKGKHENLIN 1269
+ + + LDR+ TV+VA H + + AD + V+K G ++ +G L +
Sbjct: 171 PRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD 227
|
Length = 274 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 5e-27
Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 19/214 (8%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---Q 1113
D +V + ++L I G+ VA+VG SGSGKST++ LL +P +G + +G + KL +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1114 LKWLR-QQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEMANAHKFICSL 1168
LR +++G + Q L D T N+A EA+ + A EM
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-ERAYEMLEK------- 128
Query: 1169 QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV 1228
G + + R +LSGG++QRVAIARA+V P ++L DE T LD + +++ D + +
Sbjct: 129 -VGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 1229 MKNRTT--VVVAHRLSTIKNADMIAVVKNGVIVE 1260
+ T +VV H L K D + +K+G +
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 5e-27
Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 23/243 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
I +DV+ SY N + G S+ AL+G SG GKST + + R D
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 439 QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ +G N+ + L +RK++G+V Q+P F S+ DN+AYG KD +
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ RV L AA + + D L + SGGQ+QRI IARA+ P+++LLDE T
Sbjct: 122 Q-RVEESLKQAAIW----KETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S ++E L + T ++V H L R +D A + G ++E G ++
Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235
Query: 610 DPE 612
P+
Sbjct: 236 APK 238
|
Length = 251 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-27
Identities = 84/269 (31%), Positives = 131/269 (48%), Gaps = 20/269 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I L +V +SYP ++ I G ++G++GSGKST+ + PQ G+V
Sbjct: 2 IRLENVSYSYP--DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 444 LIDGINLKEF-QLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDDATTE--EIRVATEL 498
L+ GI+ +F +LQ IRK +G+V Q P F G ++++++A+G ++ EIR +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A A ++K LSGGQ Q +A+A + +P L+ DE TS LD +S
Sbjct: 120 ALAEIGLEKYRH-------RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 559 KVVQEALDRIMVN-RTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY-- 615
V E + ++ +T V + H L + +AD I V+ RGKIV +G ++ D
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLG 232
Query: 616 ---SQLIRLQEANKESEQTIDGQRKSEIS 641
LI L E K I + S S
Sbjct: 233 LTPPSLIELAENLKMHGVVIPWENTSSPS 261
|
Length = 274 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-27
Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 15/204 (7%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVL 471
A+ G+SGSGK+T+I LI P GE++++G L K L +++IG V QE L
Sbjct: 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARL 86
Query: 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F S++ N+ YG A E R+ + + I+ L GI L+G +LSGG+KQR
Sbjct: 87 FPHLSVRGNLRYGMKRARPSERRI-----SFERVIELL--GIGHLLGRLPGRLSGGEKQR 139
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNA 587
+AI RA+L PR+LL+DE +ALD + + L+R+ + V+H L V R A
Sbjct: 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199
Query: 588 DMIAVIHRGKIVEKGTHSKLVEDP 611
D + V+ G++ G +++ P
Sbjct: 200 DRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-27
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 30/200 (15%)
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ- 1110
YP P+V + LN G+ +AL+G +G+GKST++ L P +G + +DG +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1111 -KLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK---GGDATEAEIQAASEMANAHKF 1164
+ L RQ++GLV Q+P LF + ++A+G G +EAE++ A
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL--SEAEVERRVREAL---- 112
Query: 1165 ICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
T VG GL LSGG+K+RVAIA A+ P +LLLDE T+ LD
Sbjct: 113 ---------TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163
Query: 1219 RVVQDALDRVMKNRTTVVVA 1238
+ L R+ TVV++
Sbjct: 164 EQMLAILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-27
Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 23/221 (10%)
Query: 1032 SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
+++ +I++ +++F Y +++NL I + A +G SG GKST++
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
Query: 1092 QRFYD--PD---AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG 1144
R Y+ P+ G I LDG I K + LR ++G+V Q+P F +I NIA+G
Sbjct: 60 NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG-- 117
Query: 1145 GDATEAEIQAASEMANAHKFICSLQQGY------DTMVGERGLQLSGGQKQRVAIARAIV 1198
E + +EM ++ +L + D + + G LSGGQ+QR+ IAR I
Sbjct: 118 --VRLFEKLSRAEMDERVEW--ALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIA 172
Query: 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAH 1239
P++LLLDE SALD S +++ + + ++ T V+V H
Sbjct: 173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-27
Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 17/202 (8%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--- 454
++ I +++I G A++G+SGSGKST++++I +G+V ++G
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 455 -LQWIRKKIGLVSQEPVLF-TGSIKDNIAYG---KDDATTEEIRVATELANAAKFIDKLP 509
++ R+K+G + Q L ++++N+ G K + E+ E KL
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
Q I +LSGG++QR+A+ARAILK P ++L DE T +LD ++ V + L +
Sbjct: 130 QKI--------YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 570 -VNRTTVIVAHRLSTVRNADMI 590
+T +IV H + AD +
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 18/224 (8%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQLK 1115
Q D+N++I K AL+G SG GKST + R D A G + ++G +++ +
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 1116 WLRQQMGLVSQEPVLFNDTIRANIAYG-------KGGDATEAEIQAASEMANAHKFICSL 1168
LR+ +G+V Q+P +F +I NI+Y K D EA + + + +
Sbjct: 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVV------DCLQKVGLF 129
Query: 1169 QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV 1228
++ D + + L LSGGQ+QR+ IARA+ PK+LLLDE TSALD S V+++ L +
Sbjct: 130 EEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL 188
Query: 1229 MKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
N + ++V H + K AD A G ++E G+ + P
Sbjct: 189 SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232
|
Length = 246 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-26
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 15/226 (6%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
D + +++NL I AL+G SG GKST + L R D GHI LDGV+I
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG---KGGDATEAEIQAASEMANAHKFIC 1166
+ + LR+++G+V Q+P F +I N+AYG G D + + E A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD 1226
++ D + L LSGGQ+QR+ IAR I P+++L+DE SALD S ++D +
Sbjct: 135 EVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 1227 RVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP 1271
++ ++ T V+V H + + + + NG I+E G + + P
Sbjct: 191 KLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236
|
Length = 250 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 68/245 (27%), Positives = 128/245 (52%), Gaps = 28/245 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ YP +Q +++I+ G A++G SG+GKST++ I R +P +G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT---------- 489
L++G L+ +L+ +R++IG++ Q L ++ +N+ +G+
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 490 -EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
E+ A ++++ G+ + QLSGGQ+QR+AIARA+ + P ++L DE
Sbjct: 120 EEDKERALSA------LERV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 549 ATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
++LD ++ K V + L RI T +I H++ + AD I + G+IV G S
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 606 KLVED 610
+L ++
Sbjct: 232 ELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 30/205 (14%)
Query: 1057 DVQVF-------RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITL 1104
DV VF D++L I A +G SG GKST + L R D G ITL
Sbjct: 24 DVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83
Query: 1105 DGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG---KGGDATEAEIQAASEMA 1159
DG +I +L + LR ++G+V Q+P F +I N+AYG G ++AE+ E
Sbjct: 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVET- 142
Query: 1160 NAHKFICSLQQG--YDTM---VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
SL++ ++ + + E G LSGGQ+QR+ IARAI P+++L+DE SALD
Sbjct: 143 -------SLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 1215 AESERVVQDALDRVMKNRTTVVVAH 1239
+ V++ +D + +N T V+V H
Sbjct: 196 PIATAKVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 23/234 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L V F Y P +L + AG+ VA++G SG+GKST+++L+ F P +G I
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG-KGGDATEAEIQAASEMAN 1160
++GV+ + + ++ QE LF T+ NI G G AE + E A
Sbjct: 57 LINGVDH--TASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD----AE 1216
A + G+ + +LSGGQ+QRVA+AR +V++ ILLLDE SALD AE
Sbjct: 115 AQVGL----AGFLKRLPG---ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167
Query: 1217 SERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
+V D + T ++V H AD + + NG I +G + L++
Sbjct: 168 MLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 82/219 (37%), Positives = 113/219 (51%), Gaps = 28/219 (12%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQLQ--WIRKK 461
I G AL+G SG GKSTV+ + R D G VL DG +L + ++ +R++
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 462 IGLVSQEPVLFTGSIKDNIAYGKD----DATTEEIRVATELANAAKF---IDKLPQGIDT 514
IG+V Q+P F SI +NIA+G +E+ V L AA + DKL
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL-VERSLRKAAVWDECKDKL------ 148
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
E G LSGGQ+QR+ IAR I +P ++L+DE SALD S ++E + + N T
Sbjct: 149 --NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 575 VIVAHRL-STVRNADMIAVIHRGKIVEKGTHSK---LVE 609
VIV H + VR +DM A + VE G+ K LVE
Sbjct: 207 VIVTHNMQQAVRVSDMTA-FFNAEEVEGGSGGKVGYLVE 244
|
Length = 269 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 60/210 (28%), Positives = 110/210 (52%), Gaps = 16/210 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +V + + +++ +RAG+ + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+G +I L+ + RQQ+ +Q P LF DT+ N+ + Q ++ +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF---------PWQIRNQQPDPA 115
Query: 1163 KFICSLQQGY--DTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
F+ L++ DT++ + +LSGG+KQR+++ R + PK+LLLDE TSALD ++
Sbjct: 116 IFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
Query: 1221 VQDALDRVMKNRTTVV--VAHRLSTIKNAD 1248
V + + R ++ + V V H I +AD
Sbjct: 176 VNEIIHRYVREQNIAVLWVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-26
Identities = 120/479 (25%), Positives = 209/479 (43%), Gaps = 78/479 (16%)
Query: 841 LARIVQNISTAAAGLIIAFTASWQ-LALIIL----VMLPLIGVSGYTQMKFMKGFSADAK 895
LA + I +A +I+A W L +L VM+ ++ ++ MK K + A
Sbjct: 431 LATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMK-TKTYQV-AH 488
Query: 896 MKYEEAS-QVANDAVGSIRTVASFCAEEKVMQLY------KKKCEAPMKTGIRQG----- 943
MK ++ ++ N+ + I KV++LY K E GIRQ
Sbjct: 489 MKSKDNRIKLMNEILNGI----------KVLKLYAWELAFLDKVE-----GIRQEELKVL 533
Query: 944 -----MVSGGGFG---ASFFLLFAFYAASFYAGARLVEDGKATFSDV--FKVF-FSLTMT 992
+ + G F F + +A + D + F + F + F L +
Sbjct: 534 KKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNIL 593
Query: 993 AIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP-SDESGTILEDVKGEIELHHVSFK 1051
+ IS S + + I +++P S E TI I +H+ +F
Sbjct: 594 PMVISSIVQASVSLKRLR--------IFLSHEELEPDSIERRTIKPGEGNSITVHNATFT 645
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
+ +R + I G VA+VG+ G GKS+++S L D GH+ + G
Sbjct: 646 W-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----- 699
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDAT--EAEIQAASEMANAHKFICSLQ 1169
+ V Q+ + ND++R NI +GK + + ++A + + + L
Sbjct: 700 --------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLE----ILP 747
Query: 1170 QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDAL---D 1226
G T +GE+G+ LSGGQKQRV++ARA+ + I L D+ SA+DA + + + + +
Sbjct: 748 SGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE 807
Query: 1227 RVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSA 1285
V+KN+T ++V H +S + D+I V+ G I E G ++ L+ DG +A + ++
Sbjct: 808 GVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTYAPD 865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 21/184 (11%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
H+S Y +P D++L I +G+ V ++G SG GK+T+++L+ F P G I L+G
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 1107 VEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KG-GDATEAEIQAASEMANA 1161
I+ + G+V Q L + N+A+G +G A EI A +M
Sbjct: 67 RRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI--AHQMLA- 118
Query: 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVV 1221
+ L+ + QLSGG +QRV IARA+ +P++LLLDE ALDA + +
Sbjct: 119 ---LVGLEGAEHKYI----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
Query: 1222 QDAL 1225
Q+ L
Sbjct: 172 QELL 175
|
Length = 259 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-26
Identities = 72/205 (35%), Positives = 103/205 (50%), Gaps = 16/205 (7%)
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124
+L + G+ VA++G SG+GKST+++L+ F +P +G I ++ L ++ + ++
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSML 75
Query: 1125 SQEPVLFND-TIRANIAYG-KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQ 1182
QE LF T+R NI G G AE Q A + Q G + Q
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDA-------AQQVGIADYLDRLPEQ 128
Query: 1183 LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM---KNRTTVVVAH 1239
LSGGQ+QRVA+AR +V+ ILLLDE SALD R AL + + + RT ++V H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALD-PLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 1240 RLS-TIKNADMIAVVKNGVIVEKGK 1263
LS A IAVV G I
Sbjct: 188 HLSDARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 7e-26
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YP P ++ G + + G AL+G +G+GKST++ + PQ+G VLIDG L
Sbjct: 1 YPGGP--EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 453 FQ--LQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVATELANAA 502
+ L R+++GLV Q+P LF + ++A+G + +R A A+
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
++ LSGG+K+R+AIA A+ P +LLLDE T+ LD + +
Sbjct: 119 GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 563 EALDRIMVNRTTVIVA 578
L R+ TV+++
Sbjct: 168 AILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-----HITLDGVEI-QKL 1112
Q + +NL I A + AL+G SG GKST++ L R D G +T+DG +I +
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYG--KGGDATEAEIQAASEMANAHKFICSLQQ 1170
+ LR ++G+V Q+P F +I N+AYG G + + E + +L
Sbjct: 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG---AALWD 133
Query: 1171 GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK 1230
+ LSGGQ+QR+ IAR I +P ++L+DE TSALD + +++ ++ + K
Sbjct: 134 EVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
Query: 1231 NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
N T V+V H + + +D A G +VE + + + P
Sbjct: 194 NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235
|
Length = 249 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 9e-26
Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 25/247 (10%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS----LIERFY 436
IE+RD+ S+ ++ G ++ I T AL+G SGSGKST++ LIE +
Sbjct: 1 MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 437 DPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGSIKDNIAYG-------KDDA 487
+ + +GEV +DG ++ + + +R+++ +V Q P + SI +N+A G K
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 488 TTEE-IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
+E +R A E A+ D++ +D G +LSGGQ+QR+ IARA+ P +LL
Sbjct: 118 ELQERVRWALE---KAQLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLA 170
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHS 605
DE T+ LD E+ ++ + + T V+V H R +D +A +++G+IVE G
Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230
Query: 606 KLVEDPE 612
++ +P
Sbjct: 231 EVFTNPR 237
|
Length = 250 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 26/253 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ D+ SY Q S G L+G++G+GK+T++ +I P +G+V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
IDG++ ++R+KIG++ E L+ + ++N+ Y G +
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK-----AR 113
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+A +K + L + +D VGE S G KQ++AIARA++ DP IL+LDE TS LD +
Sbjct: 114 IAELSKRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 558 EKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV-----ED 610
+ + + ++ R + +H + V D + V+H+G++V +G+ L +
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRN 228
Query: 611 PEGAYSQLIRLQE 623
E ++ ++L+E
Sbjct: 229 LEEIFAFALKLEE 241
|
Length = 245 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 80/259 (30%), Positives = 123/259 (47%), Gaps = 44/259 (16%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
E +E+ +++ Y D Q D++++I + A +G SG GKST++ R D
Sbjct: 22 EQTA--LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76
Query: 1097 P-DA----GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG---KG-- 1144
D G I LDG I +K+ + LR+++G+V Q P F +I N+ YG +G
Sbjct: 77 LVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIN 136
Query: 1145 -----GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199
+A E ++ A+ L + E LSGGQ+QR+ IARAI
Sbjct: 137 NRRVLDEAVERSLRGAA-----------LWDEVKDRLHENAFGLSGGQQQRLVIARAIAI 185
Query: 1200 DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAH------RLSTIKNADMIAVV 1253
+P++LLLDE TSALD S +++ + + T V+V H R+S D A +
Sbjct: 186 EPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVS-----DYTAFM 240
Query: 1254 KNGVIVEKGKHENLINIPD 1272
G +VE G + L P
Sbjct: 241 YMGKLVEYGDTDTLFTSPA 259
|
Length = 272 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-25
Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 8/223 (3%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ G S I+ +VG++GSGKST++ R + GE+ ++G + + L+ +R+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVG 517
+ ++ Q+PVLF G+++ N+ D +A++ E+ A EL + + +GID+ V
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNV----DPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 518 EHGTQLSGGQKQRIAIARAILK-DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
E G+ S GQ+Q + +ARA+LK +L+DEAT+ +D ++ +Q + T +
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+AHRL TV D I V+ G + E G+ +LV + + + ++
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 16/240 (6%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA 1099
++E +SF Y D Q D++L+ + AL+G SG GKST + L R D P A
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 1100 ---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG--KGGDATEAEI 1152
G I LDG I + + LR+++G+V Q+P F +I N+AYG G +A +
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL 122
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
E + H +L + E L LSGGQ+QR+ IARA+ +P++LL+DE SA
Sbjct: 123 AERVERSLRH---AALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 1213 LDAESERVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP 1271
LD + + +++ + + T ++V H + + +D+ A G ++E G E + P
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239
|
Length = 253 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-25
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA- 1099
G I + H+ Y + V DL+L+I AG+ +AL+G+SG GK+T++ + F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1100 -GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAAS 1156
G I + ++ ++ + L+ Q LF + + N+A+G + +A+I A
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADI--AE 116
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+A+A K + G QLSGG +QR+AIARAI +P +LLLDE SALDA
Sbjct: 117 RVADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN 171
Query: 1217 SERVVQD---ALDRVMKNRTTVVVAH-RLSTIKNADMIAVVKNGVIVEKGKHENLINIP- 1271
+++ AL + T + V H + + AD ++K+G + G+ + L + P
Sbjct: 172 IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPA 231
Query: 1272 DGFYASLI 1279
DGF A +
Sbjct: 232 DGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 11/207 (5%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA 1099
+I+ V+F Y D + ++++I VA +G SG GKST + L R D P
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 1100 ---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQA 1154
G I +DG I + +Q+ LR+ +G+V Q P F +I N+AYG + +
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+ K + D + E LSGGQ+QR+ IARA+ P +LL+DE SALD
Sbjct: 120 RQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
Query: 1215 AESERVVQDALDRVMKNRTTVVVAHRL 1241
S V++ + + K+ T V+V H +
Sbjct: 179 PISTAKVEELIHELKKDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 76/219 (34%), Positives = 125/219 (57%), Gaps = 15/219 (6%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWIR-KK 461
S++I G ++G SGSGKST++ L+ R +P G+VLIDG+++ + +L+ +R KK
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ-GIDTLVGEH 519
I +V Q L ++ DN A+G + A + E K +D L Q G++ +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAG-----INAE-ERREKALDALRQVGLENYAHSY 161
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIV 577
+LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L ++ RT V +
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 578 AHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+H L +R D IA++ G++V+ GT +++ +P Y
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 35/236 (14%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---------- 450
+ G + S+++G AL+G SGSGKST++ ++ G++ ++G L
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 451 ---KEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG----KDDATTEEIRVATELANAA 502
E L+ +R KIG+V Q LF ++ DN+ A E + A EL +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
DK QLSGGQ+QR+AIARA+ P+++L DE TSALD E +V
Sbjct: 135 GLADKADH--------MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVG 183
Query: 563 EALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
E L+ I + T ++V H + R AD + +G+IVE+G ++ P+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPK 239
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 27/246 (10%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439
IE + VY+ + + G + I AL+G SG GKST++ R + +
Sbjct: 5 IETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEE 59
Query: 440 A---GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATT 489
A GEV + G N+ + I R+++G+V Q P F +I DN+A G +
Sbjct: 60 ARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSK 119
Query: 490 EEI--RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
+E+ RV L AA L + + ++ + LSGGQ+QR+ IARA+ P+ILL+D
Sbjct: 120 KELDERVEWALKKAA-----LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMD 174
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHR-LSTVRNADMIAVIHRGKIVEKGTHSK 606
E T+ +D ++E L + T V+V H R +D +A ++ GK++E G K
Sbjct: 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234
Query: 607 LVEDPE 612
+ E+PE
Sbjct: 235 VFENPE 240
|
Length = 253 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 80/268 (29%), Positives = 137/268 (51%), Gaps = 52/268 (19%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ D++ Y +E + G S+ ++G +++G SGSGKST + I P AG +
Sbjct: 7 LEVEDLHKRYG--EHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 444 LIDG--INLK-----------EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
++G I LK + QLQ +R ++G+V Q L++ ++ +N+
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 484 --KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
K +A + A K++ K+ GI + LSGGQ+QR+AIARA+ +P
Sbjct: 124 VSKAEA----------IERAEKYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEP 171
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHR 595
++L DE TSALD E +V E L ++M + RT V+V H + R+ + + +H+
Sbjct: 172 EVMLFDEPTSALDPE---LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ 227
Query: 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
GKI E+G ++ +P+ RL++
Sbjct: 228 GKIEEEGPPEQVFGNPQSP-----RLKQ 250
|
Length = 256 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-25
Identities = 88/289 (30%), Positives = 139/289 (48%), Gaps = 35/289 (12%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ S + G A+ G +GSGKS+++ +I +P G++ G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF---IDKLPQGIDTLVG 517
+I Q + G+IKDNI +G + +E R T + A + I P+ T++G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRY-TSVIKACQLEEDIALFPEKDKTVLG 543
Query: 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVI 576
E G LSGGQ+ RI++ARA+ KD + LLD + LD +EK + E+ L ++M N+T ++
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQR 636
V +L ++ AD I ++H G GT S+L S L+ L E+ +R
Sbjct: 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGL-----EAFDNFSAER 658
Query: 637 KSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD 685
++ I E+LR R SI G S S +I SF P +FA+
Sbjct: 659 RNSILTETLR--------RVSID-GDSTVFSGPETIKQSFKQPPPEFAE 698
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 24/265 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E RD+ +SYP + G + G AL+G +G+GKST+ P +GEV
Sbjct: 2 LETRDLKYSYP--DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELA 499
LI G I + L +RK +G+V Q P LF ++++++A+G + + V +
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
A K + +G + H LSGGQK+R+AIA + P I++LDE TS LD
Sbjct: 120 EALKAVGM--EGFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 560 VVQEALDRIMVNR---TTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ + L + N+ T +I H + V AD + V+ GKI+++GT ++ D E
Sbjct: 175 QIMKLLYDL--NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIR 232
Query: 616 SQLIRL-------QEANKESEQTID 633
+RL + NKE I
Sbjct: 233 KANLRLPRVAHLIEILNKEDNLPIK 257
|
Length = 275 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-25
Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 16/277 (5%)
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGT-ILEDVKGEIELHHVSFKYPSRPDVQVFRDL 1064
+N ++ S +I + D +D SG + IE ++ Y D Q D+
Sbjct: 2 TNNEMTSDESSDGLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDV 58
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DA----GHITLDGVEI--QKLQLKWL 1117
++ I + A++G SG GKST + + R D DA G +T G + + L
Sbjct: 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118
Query: 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVG 1177
R+++G+V Q+P F +I N+AYG + +I E + +L +
Sbjct: 119 RRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRR---AALWDEVKDQLD 175
Query: 1178 ERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVV 1237
GL LSGGQ+QR+ IARAI DP+++L+DE SALD + ++D ++ + + T V+V
Sbjct: 176 SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIV 235
Query: 1238 AHRL-STIKNADMIAV-VKNGVIVEKGKHENLINIPD 1272
H + + +D AV + G +VE + + P+
Sbjct: 236 THNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPE 272
|
Length = 285 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-25
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 14/234 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH- 1101
+E HVSF YP D++ I G AL+G +GSGKST+ L+ PD
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1102 --ITLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKGGDATEAEIQAASE 1157
IT+DG+ + + +R+++G+V Q P T+ ++A+G E E
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG-----LENRAVPRPE 119
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
M + + + G + LSGGQKQRVAIA + +PKI++LDE+TS LD
Sbjct: 120 MIKIVRDVLA-DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178
Query: 1218 ERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
+ + + ++ K N T + + H + AD + V+ +G ++ +G + +
Sbjct: 179 KEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232
|
Length = 282 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 28/237 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL +VS + + + DL+ ++ G+ A+VG +G+GK+T++SLL + P +G +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1103 TLDGVEIQKLQLKW-LRQQMGLVS---QEPVLFNDTIRANIAYGK-------GGDATEAE 1151
TL G K + + LR+++GLVS E +T+R + G D T +
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 1152 IQAASEMANAHKFICSLQQGYDTMVGERGL-QLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
+ AA + L+ + +R LS G+++RV IARA+VKDP++L+LDE
Sbjct: 149 LAAAQWL---------LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 1211 SALDAES-ERVVQDALDRVMKNRTT--VVVAHRLSTI-KNADMIAVVKNGVIVEKGK 1263
LD + E+++ + + V H I ++K G +V +GK
Sbjct: 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 32/243 (13%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--KEFQLQWIR 459
+ I A++G SG GKST I + R + G++L N+ K + ++ +R
Sbjct: 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGID 513
+G+V Q+P F SI DN+ YG KD T +EI V L AA + D+L +
Sbjct: 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-VEKSLRGAAIW-DELKDRLH 162
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
+ LSGGQ+QR+ IAR + +P ++L+DE TSALD S V+E + + + +
Sbjct: 163 D----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218
Query: 574 TVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
+IV H + R +D A G + E K+ +P ++K +E I
Sbjct: 219 IIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP------------SDKRTEDYI 266
Query: 633 DGQ 635
G+
Sbjct: 267 TGR 269
|
Length = 271 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 66/209 (31%), Positives = 111/209 (53%), Gaps = 15/209 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ---KLQLK 1115
QV D+NL+I G+ V L G SGSGK+T+++L+ G + + G E+ + +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 1116 WLRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDT 1174
LR+ +G + Q L T R N+ + + + A + ++ G
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNV---QMALELQPNLSYQEARERARAMLEAV--GLGD 133
Query: 1175 MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR-- 1232
+ LSGGQKQRVAIARA+V PK++L DE T+ALD++S R V + + ++ + +
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193
Query: 1233 TTVVVAH--RLSTIKNADMIAVVKNGVIV 1259
T ++V H R+ + AD I +++G ++
Sbjct: 194 TILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 26/226 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +++FKY + D++ ++ G+ ++++G +GSGKST V L+ + ++G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG---KGGDATE--AEIQAA 1155
+DG + + + +R ++G+V Q P T+ ++A+G KG E + A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1156 SEMANAHKFICSLQQGYDTMVGERG-LQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
E+ F ER +LSGGQKQRVAIA A+ PKI++LDEATS LD
Sbjct: 125 LELVGMQDF------------KEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 1215 AESE----RVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNG 1256
E + ++ D T + + H L + +D + V+KNG
Sbjct: 173 PEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 26/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFS--GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I ++V F Y + + F+ S +I G ++VG +GSGKST+ L+ ++G
Sbjct: 8 IVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFTGSI-KDNIAYGKD------DATTEEIR 493
E+ + + + + +RK IG+V Q P F GSI K ++A+G + D +
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + + + D P LSGGQKQR+AIA + +P +++LDEATS L
Sbjct: 125 EALKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 554 DAESEKVVQEALDRIMVNRTTVIVA--HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
D ++ + + + + ++ I++ H LS AD + V+++G + ++GT +++ +
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 612 EG 613
E
Sbjct: 234 EE 235
|
Length = 269 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 4e-25
Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 44/281 (15%)
Query: 1027 DPSDESGTILEDVKGEIELHHVSFKYPS-----RPDVQVFR---DLNLKIRAGKTVALVG 1078
P E +L +V+ + +P R V R ++L +R G+T+ LVG
Sbjct: 267 PPLPEDAPVLLEVED------LRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG 320
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWLRQQMGLVSQEPV-LFNDT 1134
ESGSGKST+ L R G I DG +I L +++ LR++M +V Q+P +
Sbjct: 321 ESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP- 378
Query: 1135 IRANIA---------YGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGER-GLQLS 1184
R + + A E + + + G D R + S
Sbjct: 379 -RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV---------GLDPATRNRYPHEFS 428
Query: 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLS 1242
GGQ+QR+AIARA++ P+++LLDE TSALD + V D L + + + + ++H L+
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488
Query: 1243 TIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYA-SLIAL 1281
++ + V+++G IVE+G E + P Y +L+A
Sbjct: 489 VVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAA 529
|
Length = 534 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-25
Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 34/228 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L V + Y P E F ++++ G A++G SG+GKST+++LI F +P +G +
Sbjct: 1 LALDKVRYEYEHLPME-----FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG-----KDDATTEE-IRVAT 496
++ + L ++ + ++ QE LF +++ NI G K +A +E + A
Sbjct: 56 KVNDQS--HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ A ++D+LP+ QLSGGQ+QR+A+AR +++ ILLLDE SALD
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-- 160
Query: 557 SEKVVQEALDRIMV-----NRTTVIVAHRLS-TVRNADMIAVIHRGKI 598
+ +E L + RT ++V H LS A IAV+ +GKI
Sbjct: 161 -PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-25
Identities = 56/185 (30%), Positives = 103/185 (55%), Gaps = 9/185 (4%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116
D ++ +++L +RAG+ +A+ G SG GKST++ ++ P +G + +G ++ L+ +
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMV 1176
RQQ+ +Q P LF DT+ N+ + + AA + + D+++
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALD------LLARFALP-DSIL 127
Query: 1177 GERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTT 1234
+ +LSGG+KQR+A+ R + PKILLLDE TSALD ++R +++ + R + +N
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV 187
Query: 1235 VVVAH 1239
+ + H
Sbjct: 188 LWITH 192
|
Length = 223 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 7e-25
Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 21/229 (9%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI-- 1109
+ + +++ +KI + A++G SG GK+T++ + R D P G I G +I
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI-CSL 1168
+L + R+++G+V Q+P F +I N+A+G I + + SL
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG-------PRIHGVKSKHKLDRIVEESL 127
Query: 1169 QQG--YDTM---VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
++ +D + + + G +LSGGQ+QR+ IARA+ +P+++LLDE TSALD + + ++
Sbjct: 128 KKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 1224 ALDRVMKNRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIP 1271
L+ + +N T V+V H + I+ AD IA + G ++E G ++ P
Sbjct: 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERP 236
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 7e-25
Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 24/246 (9%)
Query: 1042 EIELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+I V +Y P + + D+N+ I +G VA++G +GSGKST++ L P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 1100 GHITLDGVEIQ----KLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEA 1150
G +T+ I +LK LR+++G+V Q E LF +T+ +I +G G +A
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVGERG-LQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
+ Q A EM + + G + R +LSGGQ +RVAIA + +P++L+LDE
Sbjct: 122 K-QKAREMI---ELV-----GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172
Query: 1210 TSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHEN 1266
T+ LD + + + + ++ K TTV+V H + AD I V+ G + +G
Sbjct: 173 TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232
Query: 1267 LINIPD 1272
+ PD
Sbjct: 233 IFADPD 238
|
Length = 290 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-25
Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 21/224 (9%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
F+ + VQ ++ ++ G+ L+G +G+GK+T + +L +PDAG T+DG
Sbjct: 8 TKRFRDVKKT-VQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG 66
Query: 1107 VEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAASEMAN 1160
++ K + R+++G VS L++ T R N+ Y G GD A ++ ++
Sbjct: 67 FDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG 125
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
+ + D VG S G +Q+VAIARA+V DP +LLLDE T+ LD + R
Sbjct: 126 MEELL-------DRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 1221 VQDALDRVMKNRTTVVVA-HRLSTIKN-ADMIAVVKNGVIVEKG 1262
+++ + ++ ++ + H + ++ D + V+ G +V +G
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-25
Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 26/221 (11%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINL-----KEFQLQWI 458
I S A++G SG GKST + I R D P G ++ DG ++ E L
Sbjct: 62 ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL--- 118
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGI 512
RKKIG+V Q+P F SI DNIAYG D EEI V L AA + D++ +
Sbjct: 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI-VEKSLRKAALW-DEVSDRL 176
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
D ++ LSGGQ+QR+ +AR + +P ILLLDE TSALD ++ +++ + + +
Sbjct: 177 D----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232
Query: 573 TTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D + G +VE ++L +P+
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPK 273
|
Length = 286 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-25
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 40/221 (18%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I L ++S Y RP + +++L + G+ + LVG +G+GKST++ +L +PD+G +
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASE-MA 1159
T ++G +SQEP L T+ + G AE++ A +A
Sbjct: 61 TRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1160 NAH-KFICSLQQGYDTMVGER----------GLQ----------LSGGQKQRVAIARAIV 1198
+ + + L+ + + G GL LSGG ++RVA+ARA++
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAH 1239
++P +LLLDE T+ LD ES ++D L R T +VV+H
Sbjct: 170 EEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 19/238 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ F Y + +G S SI+ G +++GQ+GSGKST LI+ ++ G+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDDA---TTEEIRVATEL 498
IDG L + +R+KIG+V Q P F G +++D++A+G ++ E I+ E
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD---- 554
A +D +LSGGQKQR+A+A I P I++LDE+TS LD
Sbjct: 125 LLAVNMLD--------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
E +V+ E ++ + T + + H L ++D I V+ G+I+++ S+L E
Sbjct: 177 QEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232
|
Length = 277 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 8e-25
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 19/225 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L + F Y +P +L G+ A+VG SGSGKST+++L+ F P +G +
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKG-GDATEAEIQAASEMAN 1160
++GV++ + + ++ QE LF T+ N+ G G AE + A E+A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
A + G + +LSGG++QRVA+AR +V+D +LLLDE +ALD
Sbjct: 114 A-------RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
Query: 1221 VQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
+ D + + T ++V H+ K A + + NG I +G
Sbjct: 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 20/225 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L + FSY +P F ++ + G A+VG SGSGKST+++LI F PQ+G V
Sbjct: 1 VRLDKIRFSYGEQPMH-----FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDAT--TEEIRVATELAN 500
LI+G+++ + + ++ QE LF +++ N+ G T E R A E+A
Sbjct: 56 LINGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
A G+ L +LSGG++QR+A+AR +++D +LLLDE +ALD
Sbjct: 114 AR-------VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
Query: 561 VQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ + + + T ++V H+ + A + + G+I +G
Sbjct: 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 78/243 (32%), Positives = 121/243 (49%), Gaps = 16/243 (6%)
Query: 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-- 1096
+K ++E +++ Y + Q D+NL I K AL+G SG GKST + L R D
Sbjct: 1 MKIKMESKNLNLWYGEK---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 1097 PDA---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG--GDATE 1149
+ G + LDG I + + + LR+++G+V Q+P F +I N+AYG G +
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDK 117
Query: 1150 AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
E+ E A +L + + L+LSGGQ+QR+ IAR I P ++L+DE
Sbjct: 118 KELDKIVEWALKKA---ALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 1210 TSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268
TSALD S ++D + + K T V+V H + +D A G ++E K E +
Sbjct: 175 TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
Query: 1269 NIP 1271
P
Sbjct: 235 LEP 237
|
Length = 251 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 9e-25
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 20/236 (8%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK 1111
D + +++ I AL+G SG GKST + L R D G + LDG +I +
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 1112 --LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG--KGGDAT---------EAEIQAASEM 1158
+ L LR+++G+V Q P F +IR NI+YG K GD + A E+
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
+L + + + L LSGGQ+QR+ IAR + DP+++L+DE SALD +
Sbjct: 177 VERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIAT 236
Query: 1219 RVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAV-VKNGVIVEKGKHENLINIPD 1272
++D ++ + + T VVV H + + +D AV + G +VE + + P+
Sbjct: 237 SKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPE 292
|
Length = 305 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 41/238 (17%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-----EVLIDG---INL 450
+ + G + + G A++G SGSGK+T++ I P+AG ++ ID ++
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRVATELANAAKFI 505
++ ++ +R+ +G V Q LF ++ +NI G K + E A EL AK
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL--AK-- 131
Query: 506 DKLPQGIDTLVGEHGTQ------LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
VG G + LSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 132 ----------VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE--- 178
Query: 560 VVQEALDRIMV----NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+V E L+ I RT VIV H +S R+ AD + +G+IVE+G L DP+
Sbjct: 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQ 236
|
Length = 250 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-25
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLIDGINLKEFQLQWI 458
++S+ G ALVG+SGSGKS I P GE+L+DG L L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP--LSIR 60
Query: 459 RKKIGLVSQEPV-----LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI-------D 506
+ I + Q P LFT + ++ E +R +L+ A+ +
Sbjct: 61 GRHIATIMQNPRTAFNPLFT--MGNHA--------IETLRSLGKLSKQARALILEALEAV 110
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
LP + ++ ++ QLSGG QR+ IA A+L +P L+ DE T+ LD ++ V + L
Sbjct: 111 GLPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
Query: 567 RIMVNRTTVI--VAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ T I + H L V R AD +AV+ G+IVE+GT ++ +P+ ++
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-24
Identities = 91/303 (30%), Positives = 148/303 (48%), Gaps = 35/303 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + + F++ AR +G + SI G A+VGQ G GKS+++S + D G V
Sbjct: 637 ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+ G + V Q+ + S+++NI +GK E L A
Sbjct: 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGK---ALNEKYYQQVLEACAL 739
Query: 504 FID--KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
D LP G T +GE G LSGGQKQR+++ARA+ + I L D+ SA+DA K +
Sbjct: 740 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799
Query: 562 QEAL---DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
E + + ++ N+T ++V H +S + D+I V+ GKI E G++ +L+ +GA+++
Sbjct: 800 FEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELL-QRDGAFAEF 858
Query: 619 IRLQEANKESEQTID--------GQRKSEISMES--LRHSSHRMSLRRSISRGSSI-GNS 667
+R A E + ++ G+ K +E+ L L+R +S SS G+
Sbjct: 859 LR-TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQ 917
Query: 668 SRH 670
SRH
Sbjct: 918 SRH 920
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-24
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 19/224 (8%)
Query: 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVS-LLQRFYDPDAGHITLDGV 1107
F + S+ + ++NL + G VA+VG +G GK++++S +L + + G
Sbjct: 621 YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT 680
Query: 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICS 1167
Q+ W+ FN T+R NI +G D E +A A H
Sbjct: 681 VAYVPQVSWI-------------FNATVRDNILFGSPFDPERYE-RAIDVTALQHDL--D 724
Query: 1168 LQQGYD-TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDA-L 1225
L G D T +GERG+ +SGGQKQRV++ARA+ + + + D+ SALDA R V D +
Sbjct: 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784
Query: 1226 DRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
++ +T V+V ++L + D I +V G+I E+G +E L N
Sbjct: 785 KDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448
+ SY +P S++I+SG ++G SG GK+T+++LI F P G + ++G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 449 NLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
+++ + G+V Q L ++ DN+A+G I A A + +
Sbjct: 68 -----RIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQML-- 117
Query: 508 LPQGIDTLVGEHGT------QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
LVG G QLSGG +QR+ IARA+ +P++LLLDE ALDA + + +
Sbjct: 118 ------ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
Query: 562 QEAL 565
QE L
Sbjct: 172 QELL 175
|
Length = 259 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 34/218 (15%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK---EFQLQ 456
Q+ ++ I+ G L G SGSGK+T+++LI Q G + + G L E +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 457 WIRKKIGLVSQ-----------EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505
+R+ IG + Q + V ++ N++Y + + A L + +
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDH---L 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D P LSGGQKQR+AIARA++ P+++L DE T+ALD++S + V E +
Sbjct: 136 DYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184
Query: 566 DRIMVNR--TTVIVAH--RLSTVRNADMIAVIHRGKIV 599
++ + T +IV H R+ V AD I + GK++
Sbjct: 185 QKLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 80/236 (33%), Positives = 119/236 (50%), Gaps = 34/236 (14%)
Query: 416 ALVGQSGSGKSTVISLIERFYD--PQ---AGEVLI--DGINL--KEFQLQWIRKKIGLVS 466
AL+G SG GKST + R +D P GE+++ D +N+ E +R +I +V
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 467 QEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
Q+P F SI +N+AYG K + EE RV L NAA L + +G+
Sbjct: 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAA-----LWDEVKDRLGDLA 159
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
LSGGQ+QR+ IARA+ DP ILL DE TSALD + ++E + + T +IV H
Sbjct: 160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN 219
Query: 581 L-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+ R +D A ++ G+++E G + P+ NK++E I G+
Sbjct: 220 MQQAARVSDYTAYMYMGELIEFGATDTIFIKPK------------NKQTEDYITGR 263
|
Length = 265 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 20/238 (8%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--KEFQLQWI 458
+I I + AL+G SG GKST + + R D G V+ +G N+ F + +
Sbjct: 27 NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R+KIG+V Q P F SI DNI+YG T++ + E+ + L + +
Sbjct: 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT 146
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
+ LSGGQ+QR+ IAR + +P ++L+DE TSALD S ++E + + + T +IV
Sbjct: 147 NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206
Query: 579 HRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
H + R +D A G I E+ + +L +P+ N ++E+ I G+
Sbjct: 207 HNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPK------------NTKTEEYISGK 252
|
Length = 254 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 23/221 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S++I G AL+G SG GKST++ ++ F P AG++++DG++L + ++ I ++
Sbjct: 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMM 96
Query: 466 SQEPVLFTG-SIKDNIAYG--KDDATTEEI--RVAT--ELANAAKFIDKLPQGIDTLVGE 518
Q LF +++ NIA+G +D EI RV L + +F + P
Sbjct: 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-------- 148
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ-EALDRI-MVNRTTVI 576
QLSGGQ+QR+A+AR++ K P++LLLDE ALD + +Q E +D + V T V+
Sbjct: 149 ---QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 577 VAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
V H + + A IA+++RGK V+ G ++ E P YS
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 69/230 (30%), Positives = 126/230 (54%), Gaps = 18/230 (7%)
Query: 1043 IELHHVS-FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIAYGKGGDATEAEI--QAA 1155
+ +DG ++ L +L R+Q+G++ Q +L + T+ N+A D T + +
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV 121
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+E+ + L +D+ LSGGQKQRVAIARA+ +PK+LL DEATSALD
Sbjct: 122 TELLA----LVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 1216 ESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
+ + + + L + + T +++ H + +K D +AV+ NG ++E+G
Sbjct: 174 ATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 21/234 (8%)
Query: 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I L +VS+ Y + + D+NL I G A +G +GSGKST++ LL + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1101 HITLDGVEI----QKLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEAE 1151
+ +D I + +K +R+++GLV Q E LF +T+ ++A+G G EAE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1152 IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
A ++A L +++ + +LSGGQ +RVAIA + +PKIL+LDE T+
Sbjct: 123 ALAREKLA--------LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
Query: 1212 ALDAESERVVQDALDRVMKNRTTVV-VAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
LD + + + ++ ++ T+V V H + + N AD + V++ G +V GK
Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 8/228 (3%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDPQA---GEVLIDGINLK 451
++ I +I I + + ++G SGSGKST++ ++ R YD + G+VL G ++
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ +RK++G+V Q+P F SI DNIAY +E R ++ L +
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ + +QLSGGQ+QR+ IARA+ P++LL+DE TS +D + + +++ + +
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201
Query: 571 NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
VIV+H V R AD +A ++ G++VE G+ +++ P+ ++
Sbjct: 202 EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 29/245 (11%)
Query: 384 IELRDVYFSY-PARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I +V ++Y P E Q + G A+VGQ+GSGKST+I I P G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 442 EVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGK-------DDAT 488
V +D I + K+ ++ +RK+IG+V Q E LF +++ I +G D+
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
R+ +L + + + P Q+SGGQ ++IAI + +P I++LDE
Sbjct: 123 NYAHRLLMDLGFSRDVMSQSP-----------FQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 549 ATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHS 605
T+ LD +S++ V L + N+T ++V+H ++ V R AD + V+ G IV + +
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231
Query: 606 KLVED 610
+L +D
Sbjct: 232 ELFKD 236
|
Length = 286 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 48/241 (19%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTV---ISLIERFYDPQAGEVLIDGINLKEF---QLQW 457
G S ++ G T A+VG+SG GKST+ +++IE P GE+ G +L + +
Sbjct: 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKL 89
Query: 458 IRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEE-IRVATELANAAKFIDKLPQ 510
+R+KI +V Q P YG K EE + + T L +AA+ +K
Sbjct: 90 LRQKIQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSL-SAAERREKA-L 135
Query: 511 GIDTLVG---EHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ- 562
+ VG EH + SGGQ+QRIAIARA++ DP +++ DE SALD VQ
Sbjct: 136 AMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----VQA 191
Query: 563 EALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ L+ +M + + V ++H LS V + AD + V++ G+ VEKGT ++ +P Y+
Sbjct: 192 QVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYT 251
Query: 617 Q 617
Q
Sbjct: 252 Q 252
|
Length = 327 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-24
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 13/238 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-- 441
I++R V F Y Q+ ++ A++G SG GKST++ + R D +G
Sbjct: 5 IKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 442 ---EVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVA 495
VL+D N+ L + RK++G+V Q+P F SI DN+A+G + TT + R+
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL- 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ + L + + + G LSGGQ+QR+ IAR + +P ++L+DE SALD
Sbjct: 121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
S ++E + + N T IV H + R +D + G +VE G ++ P
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238
|
Length = 251 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-24
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 20/223 (8%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQL 1114
Q D+N + GK A+VG++GSGKST++ + P G +T+D + I + +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 1115 KWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEAEIQAASEMANAHKFICSLQ 1169
+ +R+++G+V Q E LF DT+ I +G + E + AH+ + L
Sbjct: 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK-------NYAHRLLMDLG 133
Query: 1170 QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
D M + Q+SGGQ +++AI + +P I++LDE T+ LD +S+R V L +
Sbjct: 134 FSRDVM-SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192
Query: 1230 --KNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLIN 1269
+N+T ++V+H ++ + + AD + V+K G IV + + L
Sbjct: 193 TDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
|
Length = 286 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 33/244 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L+ ++ Y + Q D+ L G+T+ L+G SG+GKS+++ +L P +G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1103 TLDG------VEIQKLQLKWLRQQMGLVSQE----PVLFNDTIRANIAYGKGGDATEAEI 1152
+ G ++ LR+ +G+V Q+ P L T++ N+ EA
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNL--------IEAPC 108
Query: 1153 QA-----ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207
+ +A A K + L+ L LSGGQ+QRVAIARA++ +P++LL D
Sbjct: 109 RVLGLSKDQALARAEKLLERLR--LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD 166
Query: 1208 EATSALDAE-SERVVQDALDRVMKNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHE 1265
E T+ALD E + ++V + T V+V H + K A + ++NG IVE+G
Sbjct: 167 EPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
Query: 1266 NLIN 1269
Sbjct: 227 CFTQ 230
|
Length = 242 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-24
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVV-SLLQRFYDPDAGHITLDGVEIQ 1110
+ P V + RD+++ + GK ++G +GSGKST++ SLL +F EI
Sbjct: 668 FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-------------EIS 713
Query: 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
+ ++ W + + V Q+ + N T+R NI + DA A + A ++ + L
Sbjct: 714 EGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDA--ARLADAVRVSQLEADLAQLGG 770
Query: 1171 GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE-SERVVQDALDRVM 1229
G +T +GE+G+ LSGGQK RV++ARA+ + + LLD+ SALDA ERVV++ +
Sbjct: 771 GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830
Query: 1230 KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIA 1280
+T V+ H++ + AD + + +G + G + + YA+L A
Sbjct: 831 AGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS--LYATLAA 879
|
Length = 1560 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 23/248 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V + Q+ ++I G ++G SGSGKST++ I + + +G++
Sbjct: 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 444 LIDGINLK--EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN 500
++DG+ + + + IR++ G+V Q+ LF + +N+ +G A + A
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE-- 558
+ K+ G+ + ++LSGGQ+QR+AIARA+ P+++L DE TSALD E
Sbjct: 119 E--LLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174
Query: 559 --KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
KV+Q+ + M T VIV H + A + I +G+I E G L+++P
Sbjct: 175 VLKVMQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQ- 230
Query: 616 SQLIRLQE 623
RLQE
Sbjct: 231 ----RLQE 234
|
Length = 240 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-24
Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 31/249 (12%)
Query: 383 DIELRDVYFSYPAR-PNEQI-FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
DI + V Y + P E+ ++SI SG+ A++G +GSGKST++ + P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 441 GEVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYG-------KDDA 487
G V I + K +L+ +RKK+G+V Q E LF +++ +I +G ++DA
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLL 546
A + I+ + G+ + +LSGGQ +R+AIA + +P +L+L
Sbjct: 122 ----------KQKAREMIELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVL 169
Query: 547 DEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
DE T+ LD + K + E ++ TTV+V H + AD I V+H+G + +GT
Sbjct: 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
Query: 604 HSKLVEDPE 612
++ DP+
Sbjct: 230 PREIFADPD 238
|
Length = 290 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 20/223 (8%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122
D++L I G+ AL+G SG GKST++ +L F P AG I LDGV++ + ++ +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPIN 94
Query: 1123 LVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA-ASEMANAHKFICSLQQGYDTMVGER 1179
++ Q LF + T+ NIA+G K +AEI + +EM + +Q+ +
Sbjct: 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLG----LVHMQE----FAKRK 146
Query: 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE-SERV---VQDALDRVMKNRTTV 1235
QLSGGQ+QRVA+AR++ K PK+LLLDE ALD + +R+ V D L+RV T V
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV--GVTCV 204
Query: 1236 VVAH-RLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYAS 1277
+V H + + A IA++ G V+ G+ E + P Y++
Sbjct: 205 MVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSA 247
|
Length = 377 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 22/241 (9%)
Query: 384 IELRDVYFSYPA-RPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I L++V ++Y A P E + +++I G+ A +G +GSGKST++ L+ + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 442 EVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGKDD--ATTEEIR 493
V +D + K ++ IRKK+GLV Q E LF ++ ++A+G + + EE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE-- 120
Query: 494 VATELANAAKFIDKLPQ-GID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A LA +KL GI +L ++ +LSGGQ +R+AIA + +P+IL+LDE T+
Sbjct: 121 -AEALAR-----EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
Query: 552 ALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609
LD + K + ++ + T V+V H + V N AD + V+ +GK+V G + +
Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
Query: 610 D 610
D
Sbjct: 235 D 235
|
Length = 280 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 24/247 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
++ I G A+ G +GSGK++++ LI +P G++ G +I
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFS 103
Query: 466 SQEPVLFTGSIKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
SQ + G+IK+NI +G D+ + + A +L I K P+ +T++GE G L
Sbjct: 104 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED---ITKFPEKDNTVLGEGGITL 160
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLS 582
SGGQ+ RI++ARA+ KD + LLD LD +EK + E+ + ++M N+T ++V ++
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
++ AD I ++H G GT S+L S+L+ ++ S +R++ I
Sbjct: 221 HLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSA-----ERRNSILT 275
Query: 643 ESLRHSS 649
E+LR S
Sbjct: 276 ETLRRFS 282
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-24
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 16/223 (7%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
+D +L I G+ ++G SGSGKST+V LL R +P G + +DGV+I K+ LR+
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ-GYDTM 1175
++ +V Q L + T+ N A+G E+ + K + +L+Q G +
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFG-------MELAGINAEERREKALDALRQVGLENY 157
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRT 1233
+LSGG +QRV +ARA+ +P ILL+DEA SALD +QD L ++ RT
Sbjct: 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRT 217
Query: 1234 TVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIPDGFY 1275
V ++H L ++ D IA+++NG +V+ G + ++N P Y
Sbjct: 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 17/227 (7%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKE 452
++Q ++ + GT AL+G SG GK+T + I R +D P A G +L+DG ++
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 453 FQLQWI--RKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEE----IRVATELANAAKFI 505
++ + R+++G+V Q+P F T S+ DN+ G A + + VA A
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D++ + T T LSGGQ+QR+ IARA+ +P ILL+DE TSALD S +++ +
Sbjct: 136 DEVKDRLKT----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM 191
Query: 566 DRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+ T +IV H + R +D + G +VE G +L +P
Sbjct: 192 TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-24
Identities = 79/259 (30%), Positives = 122/259 (47%), Gaps = 47/259 (18%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + S+ + G S+++ G AL+G++G+GKST++ ++ Y P +GE+
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 444 LIDGINLKEFQLQWIRKK----IGLVSQEPVLFTG-SIKDNIAYGK---------DDATT 489
LIDG K R I V QE L S+ +NI G+ D
Sbjct: 66 LIDG---KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122
Query: 490 EEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
A + + +L ID TLVG+ LS Q+Q + IARA+ D R+L+LD
Sbjct: 123 RRR--------ARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILD 170
Query: 548 EATSALD-AESE---KVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
E T+AL E+E +++ + + ++HRL V AD I V+ G++V G
Sbjct: 171 EPTAALTVKETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVV--G 225
Query: 603 THSKLVEDPEGAYSQLIRL 621
T E E +L+RL
Sbjct: 226 TRPTAAETSE---DELVRL 241
|
Length = 500 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 6e-24
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 17/237 (7%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA- 440
G I + + +Y A + S+ I +G AL+G+SG GK+T++ I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 441 -GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATEL 498
G + I +L ++ + L+ Q LF ++DN+A+G + +A +
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+A K + G+ QLSGG +QRIAIARAI +P +LLLDE SALDA
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 559 KVVQE---ALDRIMVNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
++E AL + T + V H + + AD ++ G++ G L + P
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 47/255 (18%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
+++I + A +G SG GKSTV+ + R ++ P A GEVL+DG +L +
Sbjct: 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83
Query: 459 RKKIGLVSQEPVLF-TGSIKDNIAYG----------KDDATTEEIRVATELANAAKFIDK 507
R+ IG+V Q P F T SI+DN+ G D E+ L N K D+
Sbjct: 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK--DR 141
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
L + G LSGGQ+QR+ IARAI +P +LL+DE SALD S +++ ++
Sbjct: 142 L--------DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193
Query: 568 IMVNRTTVIVAHRL-STVRNAD------MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
+ + T VIV H + R +D + A G++VE K+ +P
Sbjct: 194 LKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNP--------- 244
Query: 621 LQEANKESEQTIDGQ 635
K +E I G+
Sbjct: 245 ---TQKATEDYISGR 256
|
Length = 258 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 79/266 (29%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 440
I DV+ Y + G + + AL+G SG GKST + + R D P
Sbjct: 6 ITSSDVHLFYGKF---EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 441 --GEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
G V + G N+ + +RK++G+V Q+P F SI +N+ YG KD A +
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
E V T L AA + + + + E LSGGQ+QR+ IAR + P ++LLDE T
Sbjct: 123 EA-VETSLKQAAIWDE-----VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S ++ L + T ++V H + R +D A G ++E ++
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236
Query: 610 DPEGAYSQLIRLQEANKESEQTIDGQ 635
+P+ KE+E I G+
Sbjct: 237 NPK------------EKETEDYITGR 250
|
Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 24/231 (10%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+HH+S ++ + + + L ++ G+TVA+VG SGSGKST++++L DP +G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1102 ITLDGVEIQKL---QLKWLR-QQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQ--- 1153
+ L G + KL LR + +G V Q L N T N+A E++
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA-------LPLELRGES 119
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
+A A A + ++ G + QLSGG++QRVA+ARA P +L DE T L
Sbjct: 120 SADSRAGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNL 177
Query: 1214 DAESERVVQDALDRVMKNR----TTVVVAHRLSTIKNADMIAVVKNGVIVE 1260
D + + D L NR T V+V H D +++G +VE
Sbjct: 178 DRATGDKIADLL--FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 9e-24
Identities = 82/264 (31%), Positives = 128/264 (48%), Gaps = 38/264 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ V+ ++ + V LN + AG+ VAL+G SGSGKST++ +L D G I
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 1103 TLDGVEIQKLQ-------------LKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KG 1144
++G ++ + L+ +R ++G+V Q LF + T+ N+ G
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117
Query: 1145 GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKIL 1204
EAE +A E+ + + L D M QLSGGQ+QRVAIARA+ PK++
Sbjct: 118 MARAEAEKRAM-ELLD----MVGLADKADHMPA----QLSGGQQQRVAIARALAMRPKVM 168
Query: 1205 LLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261
L DE TSALD E V + + R+ + T ++V H + + AD + G IVE+
Sbjct: 169 LFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228
Query: 1262 GKHENLINIPD-----GFYASLIA 1280
GK + + P F + +IA
Sbjct: 229 GKPDEIFRQPKEERTREFLSKVIA 252
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 38/237 (16%)
Query: 416 ALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINLKEFQLQW--IRKKIGLVSQE 468
AL+G SGSGKST++ I R D P+ G ++ +G N+ + +RK+IG+V Q+
Sbjct: 35 ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94
Query: 469 PVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---KFIDKLPQGIDTLVGEH 519
P F SI +N+ YG KD +E V L A+ + D+L D+ +G
Sbjct: 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEA-VEKSLKGASIWDEVKDRLH---DSALG-- 148
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGGQ+QR+ IAR + P+I+LLDE TSALD S ++E L + + T ++V
Sbjct: 149 ---LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTR 205
Query: 580 RLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+ R +D G ++E ++ +P +KE+E I G+
Sbjct: 206 SMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP------------KHKETEDYISGK 250
|
Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-23
Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++ YFS+ ++ S ++ + G+ A+VG +G GK+++IS + P++
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEE--IRVATELAN 500
++ IR + V Q +F +++DNI +G D E I V T L +
Sbjct: 675 VV------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDV-TALQH 721
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEK 559
+D LP G T +GE G +SGGQKQR+++ARA+ + + + D+ SALDA +
Sbjct: 722 D---LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607
V + + + +T V+V ++L + D I ++H G I E+GT+ +L
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEEL 826
|
Length = 1622 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 70/236 (29%), Positives = 103/236 (43%), Gaps = 26/236 (11%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA----GHITLDGVEIQKLQLKWLR 1118
DLNL ++ G+ +ALVGESGSGKS + P G I LDG + L L
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSIRG 61
Query: 1119 QQMGLVSQEPV-LFND--TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
+ + + Q P FN T+ + A E A I +
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNH--------AIETLRSLGKLSKQARALILEALEAVGLP 113
Query: 1176 VGERGL-----QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK 1230
E L QLSGG QRV IA A++ +P L+ DE T+ LD ++ V L + +
Sbjct: 114 DPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1231 NRTT--VVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYA-SLIALH 1282
T +++ H L + AD +AV+ +G IVE+G + + P L++ H
Sbjct: 174 LFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 79/264 (29%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQ 439
E+R+ F Y R + + ++ I A +G SG GKST + + + D
Sbjct: 82 EIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 440 AGEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYGK-----DDATTEEI 492
GE+ G N + ++ + R +IG+V Q+P F SI DN+AYG +D E
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
V L +AA + D++ +D + G LSGGQ+QR+ IARAI +P +LL+DE TSA
Sbjct: 201 IVEKSLKSAALW-DEVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255
Query: 553 LDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDP 611
LD + ++E + + + +IV H ++ R +D ++G I E G
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE-------- 307
Query: 612 EGAYSQLIRLQEANKESEQTIDGQ 635
++ I + NK ++ I G+
Sbjct: 308 ----TKTIFIHPKNKRTKDYISGK 327
|
Length = 329 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 31/195 (15%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ H+ Y +P D+NL + +G+ + ++G SG GK+T+++L+ F G I
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-------TIRANIAYGK--GGDATEAEIQ 1153
TLDG ++ G ++ V+F + ++ N+A+G G ++
Sbjct: 59 TLDGKPVE-----------GPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE 107
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
A +M + G + QLSGGQ+QRV IARA+ +P++LLLDE AL
Sbjct: 108 IAHQMLK--------KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159
Query: 1214 DAESERVVQDALDRV 1228
DA + +Q L ++
Sbjct: 160 DAFTREQMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 62/195 (31%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVL 471
AL G SGSGK+++I++I P G + ++G L K L +++IG V Q+ L
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F +++ N+ YG + + + + L GI+ L+ + LSGG+KQR
Sbjct: 88 FPHYTVRGNLRYGMWKSMRAQF---------DQLVALL--GIEHLLDRYPGTLSGGEKQR 136
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNA 587
+AI RA+L P +LL+DE ++LD ++ + L+R+ +N + V+H L V R A
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196
Query: 588 DMIAVIHRGKIVEKG 602
D + V+ GK+ G
Sbjct: 197 DRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 17/238 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I +VSF+Y S +D++ I G+ ++VG +GSGKST+ L+ +G I
Sbjct: 8 IVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ I + LR+ +G+V Q P ++ ++A+G A +
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYD--------E 118
Query: 1161 AHKFICSLQQGYDTMVGERGLQ---LSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
H+ + + D M+ + LSGGQKQRVAIA + +P +++LDEATS LD ++
Sbjct: 119 MHRRVSEALKQVD-MLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177
Query: 1218 ERVVQDALDRVM--KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDG 1273
+ + D + +V N T + + H LS AD + V+ G + ++G + + +
Sbjct: 178 RQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 39/247 (15%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ K R QV D++L I +G+ VAL+G SGSGK+T++ ++ +GHI
Sbjct: 3 IEIANIK-KSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---------KGGDATEAEI 1152
G ++ +L + +++G V Q LF T+ NIA+G A +A++
Sbjct: 60 RFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV 117
Query: 1153 QAASEMAN-AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
EM AH L Y QLSGGQKQRVA+ARA+ +P+ILLLDE
Sbjct: 118 TQLLEMVQLAH-----LADRYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFG 165
Query: 1212 ALDAESERVVQDALDRVMKNR------TTVVVAH-RLSTIKNADMIAVVKNGVIVEKGKH 1264
ALDA+ V+ L R ++ T+V V H + ++ AD + V+ G I + G
Sbjct: 166 ALDAQ----VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221
Query: 1265 ENLINIP 1271
+ + P
Sbjct: 222 DQVWREP 228
|
Length = 353 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 12/234 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE RD+ +SY +++ + + + A++G +G+GKST+ P +G V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
LI G + + ++ +RK +GLV Q P +F+ +++ +IA+G + +E VA +++A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+ G++ L LSGG+K+R+AIA I +P++L+LDE T+ LD + K +
Sbjct: 122 LHML-----GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 562 QEALDRIMVN--RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ L+ + T + H+L V AD I V+ +G+IV GT ++ P+
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 27/225 (12%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-K 1115
Q+ ++L + G+ VAL+G +G+GK+T++ + P +G I DG +I L +
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 1116 WLRQQMGLVSQEPVLFND-TIRANI---AYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
R +G V + +F + T+ N+ AY + +A ++ E+ L++
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPR------LKER 125
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ---DALDRV 1228
+ G LSGG++Q +AIARA++ PK+LLLDE + L + ++V+ +A+ +
Sbjct: 126 RKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIREL 178
Query: 1229 MKNRTTVVV----AHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
T+++ A I AD V++ G +V +G L+
Sbjct: 179 RDEGVTILLVEQNARFALEI--ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 79/222 (35%), Positives = 109/222 (49%), Gaps = 30/222 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
+ I A +G SG GKST++ R D P G+V G NL + +
Sbjct: 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---KFIDKLP 509
R++IG+V Q+P F SI DNIAYG K D +E+ V L AA + DKL
Sbjct: 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGD--MDEL-VERSLRQAALWDEVKDKLK 146
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
Q G LSGGQ+QR+ IARAI P ++L+DE SALD S ++E + +
Sbjct: 147 QS--------GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198
Query: 570 VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT-HSKLVE 609
T +IV H + R +DM A + ++ E G + LVE
Sbjct: 199 EQYTIIIVTHNMQQAARVSDMTAFFN-VELTEGGGRYGYLVE 239
|
Length = 264 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 37/239 (15%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E ++S + R + D++L +R G+ VA++G +G+GKST++ L PD+G +
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYGK-----GGDATEAEIQAAS 1156
L+G + L ++ ++ Q L F T+ +A G+ +A + AA
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA- 118
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV------KDPKILLLDEAT 1210
+A Q + G QLSGG++QRV +AR + P+ LLLDE T
Sbjct: 119 -LA---------QVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 1211 SALD-AESERVVQDALDRVMKNRTTV-VVAHRLSTIKN-----ADMIAVVKNGVIVEKG 1262
SALD A V++ A + V VV H L N AD I ++ G +V G
Sbjct: 169 SALDLAHQHHVLRLARQLAHERGLAVIVVLHDL----NLAARYADRIVLLHQGRLVADG 223
|
Length = 258 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 3e-23
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 23/234 (9%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVE 1108
S + + ++L + AL+G SG GKST + L R D + G I +G
Sbjct: 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 1109 I--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG------KGGDATEAEIQAASEMAN 1160
I K+ L LR+++G+V Q+P F ++ N+AYG K + + ++ + + A
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAA 132
Query: 1161 AHKFICSLQQGYDTMVGERGLQ-LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
K + D + +R Q SGGQ+QR+ IARA+ PK++LLDE TSALD S
Sbjct: 133 IWK------ETKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS 184
Query: 1220 VVQDALDRVMKNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLINIPD 1272
+++ L + T ++V H L + +D A + NG ++E G E + P
Sbjct: 185 EIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPK 238
|
Length = 251 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 15/249 (6%)
Query: 1031 ESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSL 1090
E+G EDV ++S Y D + +D+ +KI ++G SGSGKST++ +
Sbjct: 2 EAGKSAEDV------FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKV 55
Query: 1091 LQRFYDPDAGHITLDGV------EIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYGK 1143
L R + I +DG +I ++ LR+++G+V Q+P F + +I NIAY
Sbjct: 56 LNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPL 115
Query: 1144 GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKI 1203
+ + + + + + ++ YD + QLSGGQ+QR+ IARA+ PK+
Sbjct: 116 KSHGIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKV 174
Query: 1204 LLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKG 1262
LL+DE TS +D + + ++ + + V+V+H + + AD +A + NG +VE G
Sbjct: 175 LLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWG 234
Query: 1263 KHENLINIP 1271
+ P
Sbjct: 235 SSNEIFTSP 243
|
Length = 257 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 20/225 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIRK 460
S+ + G L+G +G+GK+T+ +LI FY P +G V+ G L ++ R
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI--ARL 79
Query: 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATT--------EEIRVATELANAAKFI-DKLPQ 510
I Q LF G ++ +N+A G + E A+ + + +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-- 137
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-- 568
G+ L LS GQ++R+ IARA+ P++LLLDE + L+ E + + E + +
Sbjct: 138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +++ H + V AD I V++ G+++ +GT ++ +P
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242
|
Length = 250 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-23
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 19/237 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L+ ++ Y + Q D+ L G+T+ L+G SG+GKS+++ +L P +G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1103 TLDGVEIQ------KLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAA 1155
+ G ++ LR+ +G+V Q+ L+ + T++ N+ ++ QA
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA- 118
Query: 1156 SEMANAHKFICSLQQGYDTMVGER-GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+A A K + L+ +R L LSGGQ+QRVAIARA++ +P++LL DE T+ALD
Sbjct: 119 --LARAEKLLKRLRL---KPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
Query: 1215 AE-SERVVQDALDRVMKNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLIN 1269
E + ++V + T V+V H + K A + ++NG IVE+G
Sbjct: 174 PEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230
|
Length = 242 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 23/216 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
+++I GT L+G SG GK+TV+ L+ P G++ IDG ++ +Q ++ I +V
Sbjct: 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMV 83
Query: 466 SQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
Q LF S+ +N+ YG + + ++ A EL + A F D+ +D
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY---VD----- 135
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVI 576
Q+SGGQ+QR+A+ARA++ P++LL DE S LDA + ++E + + N T++
Sbjct: 136 ---QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192
Query: 577 VAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
V H S +D + V+++GKI++ G+ +L P
Sbjct: 193 VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 57/214 (26%), Positives = 104/214 (48%), Gaps = 20/214 (9%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
+N K+R G+ +G +G+GK+T + +L P +G + G ++ + + + +R+ +
Sbjct: 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSI 68
Query: 1122 GLVSQEPVLFND-TIRANIA-----YGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
G+V Q + D T R N+ YG D E + E+ L + D
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELF-------ELGEAADRP 121
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTV 1235
VG SGG ++R+ IA +++ P +L LDE T+ LD + R + D + + + T+
Sbjct: 122 VG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 1236 VV-AHRLSTI-KNADMIAVVKNGVIVEKGKHENL 1267
++ H + K D IA++ +G I+ +G E L
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 22/197 (11%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK 1111
+ + ++++ K AL+G SGSGKST + L R D G I G++I +
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 1112 --LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG--KGGDATEAEIQAASEMANAHKFICS 1167
+ + +R+ +G+V Q P F +I NI + + G + + E S
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET--------S 143
Query: 1168 LQQG--YDTM---VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
L+Q +D + + + L LSGGQ+QR+ IARAI P ILL+DE SALD S ++
Sbjct: 144 LKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLE 203
Query: 1223 DALDRVMKNRTTVVVAH 1239
+ + + KN T ++V H
Sbjct: 204 ETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 4e-23
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 25/227 (11%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIR 459
S S+ G L+G +G+GK+T+ +LI F P +G VL DG L ++ R
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI--AR 74
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYG---------KDDATTEEIRVATELANAA-KFIDKL 508
IG Q P LF ++ +N+ E R A E A + + L
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-GL 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDR 567
D GE LS GQ++R+ IARA+ DP++LLLDE + L E+E++ E +
Sbjct: 134 ADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIRE 188
Query: 568 IMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T ++V H + V + AD + V+ +G+++ +GT ++ +P
Sbjct: 189 LRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 5e-23
Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 45/242 (18%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-------- 1110
+V + ++L+ AG ++++G SGSGKST + + P AG I ++G EI+
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 1111 -----KLQLKWLRQQMGLVSQEPVLFN----DTIRANIAYGKGGDATEAEIQA-----AS 1156
K QL+ LR ++G+V Q FN T+ N+ EA + A
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQH---FNLWSHMTVLENV--------IEAPVHVLGVSKAE 128
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+ A K++ + G LSGGQ+QRVAIARA+ +P+++L DE TSALD E
Sbjct: 129 AIERAEKYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE 186
Query: 1217 SERVVQDALDRVMKN-----RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270
+V + L +VM++ RT VVV H + ++ + + + G I E+G E +
Sbjct: 187 ---LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
Query: 1271 PD 1272
P
Sbjct: 243 PQ 244
|
Length = 256 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-23
Identities = 79/245 (32%), Positives = 117/245 (47%), Gaps = 40/245 (16%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKS-TVISLIERFYDPQA----GEVLIDGINL---K 451
+ G S I +G T ALVG+SGSGKS T +S++ P A G +L DG +L
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 452 EFQLQWIR-KKIGLVSQEPV-----LFTGSIKDNIA------YGKDD----ATTEEIRVA 495
E QL+ +R KIG++ QEP+ L T I +A G A E+
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHT--IGKQLAEVLRLHRGLSRAAARARALELLEL 141
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ K +D P +LSGGQ+QR+ IA A+ +P +L+ DE T+ALD
Sbjct: 142 VGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTALDV 190
Query: 556 ESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + + + + H L VR AD + V+ G+IVE GT L P+
Sbjct: 191 TVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ 250
Query: 613 GAYSQ 617
Y++
Sbjct: 251 HPYTR 255
|
Length = 534 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 98.6 bits (245), Expect = 5e-23
Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 10/220 (4%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ + YFS+ S +I I +G +VGQ G GKS+++ I G+V
Sbjct: 1 VQVTNGYFSWG--SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 444 LIDGINLKEFQLQWIRKK----IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
N E + R + + +Q+P L ++++NI +G + + T+
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDAC 117
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SE 558
+ ID LP G T +GE G LSGGQ+QRI +ARA+ ++ I+ LD+ SALD S+
Sbjct: 118 SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177
Query: 559 KVVQEALDRIMVN--RTTVIVAHRLSTVRNADMIAVIHRG 596
++QE + + + + RT V+V H+L + +AD I + G
Sbjct: 178 HLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-23
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 16/223 (7%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQLKWLR 1118
D + + A+ G SGSGK+T++ L+ PD G I L+G + + + L +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 1119 QQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVG 1177
+++G V QE LF ++R N+ YG A +E + + E + I L G ++G
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFE-----RVIELL--GIGHLLG 126
Query: 1178 ERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTV 1235
+LSGG+KQRVAI RA++ P++LL+DE +ALD + + L+R+ +
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 1236 VVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYAS 1277
V+H L + AD + V+++G + G + PD + +
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLA 229
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 6e-23
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 21/222 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
S+ + A++G SG GKSTV+ I R +D P A G++L+D ++ + I
Sbjct: 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK------DDATTEEIRVATELANAAKFIDKLPQG 511
R+++G+V Q+P F SI DN+ G + + +EI V + L A L
Sbjct: 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI-VESSLKRVA-----LWDE 137
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
+ + + +LSGGQ+QR+ IAR I P ++L+DE SALD S ++E ++ +
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 572 RTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D A + G +VE G K+ PE
Sbjct: 198 YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 7e-23
Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++ + ++ Y + +V D++L ++ G+ +G +G+GK+T + ++ PD+G I
Sbjct: 1 LKTNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANI-AYGKGGDATEAEIQAASEMAN 1160
T DG QK +++G + + P + N T R N+ + + I ++
Sbjct: 58 TFDGKSYQKNIEAL--RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG 115
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
L+ V S G KQR+ IA A++ +P +L+LDE T+ LD + +
Sbjct: 116 -------LKDSAKKKVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE 164
Query: 1221 VQDALDRVMKNRTTVVVA-HRLSTI-KNADMIAVVKNGVIVEKG 1262
+++ + + TV+++ H LS I K AD I ++ G ++E+G
Sbjct: 165 LRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 8e-23
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 32/239 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + Y A Q ++ G T L+G SG+GKS+++ ++ P++G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 444 LIDGINLK------EFQLQWIRKKIGLVSQEPVLFTG-SIKDNI--------AYGKDDAT 488
I G + + ++ +R+ +G+V Q+ L+ ++++N+ KD A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
++ L + D+ P LSGGQ+QR+AIARA++ +P++LL DE
Sbjct: 120 ARAEKLLKRL-RLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 549 ATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
T+ALD E + ++V + T VIV H + R A + + G IVE+G S
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 9e-23
Identities = 75/233 (32%), Positives = 113/233 (48%), Gaps = 25/233 (10%)
Query: 1046 HHVSFKYPS------RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+S Y V +++L +++G+TVAL+G SG GKST+ LL P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 1100 GHITLDGVEIQKL---QLKWLRQQMGLVSQEPV-LFN--DTIRANIA--YGKGGDATEAE 1151
G+++ G + KL Q K R+ + +V Q+ + N T+R I +AE
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE 126
Query: 1152 IQA-ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
A ASEM A S+ +R QLSGGQ QRV +ARA+ +PK+L+LDEA
Sbjct: 127 RLARASEMLRAVDLDDSVLD-------KRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179
Query: 1211 SALDAESERVVQDALDRVMKNRTT--VVVAHRLSTIKN-ADMIAVVKNGVIVE 1260
S LD + V L ++ + T + + H L ++ + V+ NG IVE
Sbjct: 180 SNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 1e-22
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 61/219 (27%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + + + G S+S+ G AL+G++G+GKST++ ++ Y P +GE+
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG + V F S +D A A
Sbjct: 58 LVDG--------------------KEVSFA-SPRD--------------------ARRA- 75
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQ 562
GI + QLS G++Q + IARA+ ++ R+L+LDE T+AL AE E++
Sbjct: 76 -------GIAMV-----YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF- 122
Query: 563 EALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIV 599
+ + R+ VI ++HRL V AD + V+ G++V
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 19/220 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S+S+ G L+G SG GK+T++ +I AG + G ++ Q +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+ G+V Q LF ++ DNIAYG + VA +A + G+ +
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERK 130
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESEKVVQE--ALDRIMVNRTTV 575
+ QLSGGQ+QR+A+ARA+ P +LLLDE SALDA E + E L R + TT+
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTI 189
Query: 576 IVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+V H LS AD I V++ G I + GT ++ P
Sbjct: 190 MVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHP 226
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 1e-22
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF 453
+Q S+ I + AL+G SG GKST I + R D G+V I+G ++ E
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84
Query: 454 QLQWI--RKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELA-NAAKFIDKL 508
+ + RK +G+V Q+P F SI DN+AYG A +++ E A +A D+
Sbjct: 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET 144
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
+ + LSGGQ+QR+ IAR + P+I+L DE TSALD S +++ + +
Sbjct: 145 SDRLKS----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200
Query: 569 MVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T VIV H + R +D G+++E G ++ +P
Sbjct: 201 KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPR 245
|
Length = 258 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 1e-22
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 8/215 (3%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINL--KEFQLQWI 458
++SI A++G SG GKST I + P GE+ +G N+ + L +
Sbjct: 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
RK IG+V Q+ F SI DN+AYG T+ + E+ + L + +
Sbjct: 92 RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
LSGGQ+QR+ IARA+ +P +LL+DE TSALD S + ++E + ++ T VIV
Sbjct: 152 QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVT 211
Query: 579 HRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
H + R +D A + G++VE +K+ +P+
Sbjct: 212 HNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 48/233 (20%), Positives = 105/233 (45%), Gaps = 23/233 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++R++ +Y S+++ G L+G +G+GK+T + ++ P +G
Sbjct: 1 LQIRNLTKTYKKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
I+G +++ + R+ +G Q LF ++++++ + G + +
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG--------LPKSEI 110
Query: 498 LANAAKFIDK--LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ L + LSGG K+++++A A++ P +LLLDE TS LD
Sbjct: 111 KEEVELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
S + + + + + R+ ++ H + D IA++ GK+ G+ +L
Sbjct: 167 ASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-22
Identities = 77/261 (29%), Positives = 131/261 (50%), Gaps = 28/261 (10%)
Query: 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
+D+R ++ + + G S+++ G T LVG+SGSGKST+ + R
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHLRAV-DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP 338
Query: 438 PQAGEVLIDG---INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV 494
Q GE+ DG L +++ +R+++ +V Q+P GS+ + G+ E +RV
Sbjct: 339 SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY---GSLSPRMTVGQ--IIEEGLRV 392
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHG----------TQLSGGQKQRIAIARAILKDPRIL 544
+AA ++ + I+ L E G + SGGQ+QRIAIARA++ P ++
Sbjct: 393 HEPKLSAA---ERDQRVIEALE-EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELI 448
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
LLDE TSALD + V + L + + + ++H L+ VR + V+ GKIVE+
Sbjct: 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508
Query: 602 GTHSKLVEDPEGAYSQ-LIRL 621
G + +P+ Y++ L+
Sbjct: 509 GPTEAVFANPQHEYTRALLAA 529
|
Length = 534 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-22
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 36/252 (14%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS-TVVSLLQRFYDPDAGH----I 1102
V+F V+ + ++ I AG+T+ALVGESGSGKS T +S+L P A H I
Sbjct: 14 VAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72
Query: 1103 TLDGVEIQKL---QLKWLR-QQMGLVSQEPVLFND---TIRANIA------YGKGGDATE 1149
DG ++ QL+ +R ++G++ QEP+ + TI +A G A
Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAAR 132
Query: 1150 AEIQAASE---MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLL 1206
A E + K + + +LSGGQ+QRV IA A+ +P +L+
Sbjct: 133 ARALELLELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIA 181
Query: 1207 DEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
DE T+ALD + + D L + + + H L ++ AD + V+++G IVE G
Sbjct: 182 DEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241
Query: 1264 HENLINIPDGFY 1275
E L P Y
Sbjct: 242 TETLFAAPQHPY 253
|
Length = 534 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-22
Identities = 72/303 (23%), Positives = 127/303 (41%), Gaps = 58/303 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I L ++ +Y RP + S++++ G LVG++G+GKST++ ++ +P +GE
Sbjct: 3 MITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG-------KDDATTEEIRV 494
V ++G +SQEP L ++ D + G + +
Sbjct: 60 VTRPK-----------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHG-----------------TQLSGGQKQRIAIARAI 537
A ++ L + +D E + LSGG ++R+A+ARA+
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH-R--LSTVRNADMIAVIH 594
L++P +LLLDE T+ LD ES + +++ L R T ++V+H R L V A I +
Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSHDRYFLDNV--ATHILELD 224
Query: 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSL 654
RGK+ G YS + + E +++ E+ + R
Sbjct: 225 RGKLTPYK----------GNYSSYLEQKAERLRQEAAAYEKQQKEL--AKEQEWIRRGKA 272
Query: 655 RRS 657
S
Sbjct: 273 AAS 275
|
Length = 530 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 97.1 bits (243), Expect = 2e-22
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 19/217 (8%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117
+ D++ +R G+ L+G +G+GK+T+ +L+ F P +G + DG +I L
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-E 71
Query: 1118 RQQMGLVS--QEPVLFND-TIRANIA--------YGKGGDATEAEIQAASEMANAHKFIC 1166
++G+ Q P LF + T+ N+ G E + A E A
Sbjct: 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131
Query: 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL-DAESERVVQDAL 1225
L D GE LS GQ++R+ IARA+ DPK+LLLDE + L E+E + +
Sbjct: 132 GLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIR 187
Query: 1226 DRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNG-VIVE 1260
+ + T ++V H + + + AD + V+ G VI E
Sbjct: 188 ELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 2e-22
Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 29/269 (10%)
Query: 357 MFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAA 416
+ + + K EI + + + +E++D+ Y ++ + S+ I A
Sbjct: 1 VVQMVREKIEIAPFPEAKEHI------LEVKDLSIYYG---EKRAVNDISMDIEKHAVTA 51
Query: 417 LVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKEFQLQWI--RKKIGLVSQEP 469
L+G SG GKST + I R D P A GE+L +G+N+ + + + R++IG+V Q+P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 470 VLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
F SI +NI + + + +EI V L AA L + + L
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEI-VEESLTKAA-----LWDEVKDRLHSSALSL 165
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-S 582
SGGQ+QR+ IAR + P +LLLDE SALD S ++E + + + +IV H +
Sbjct: 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ 225
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+R +D A G +VE ++ P
Sbjct: 226 ALRVSDRTAFFLNGDLVEYDQTEQIFTSP 254
|
Length = 268 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 2e-22
Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 38/247 (15%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN---------- 449
++ G S+ ++G +++G SGSGKST + I P G ++++G
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 450 LKEF---QLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN--AAK 503
LK QL+ +R ++ +V Q L++ ++ +N+ +A + + ++ + A A K
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM----EAPIQVLGLSKQEARERAVK 134
Query: 504 FIDKLPQGIDTLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
++ K+ GID G++ LSGGQ+QR++IARA+ +P +LL DE TSALD E +V
Sbjct: 135 YLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVG 189
Query: 563 EALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
E L RIM +T V+V H + R+ + + +H+GKI E+G +L +P+
Sbjct: 190 EVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP-- 246
Query: 617 QLIRLQE 623
RLQ+
Sbjct: 247 ---RLQQ 250
|
Length = 257 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 74/245 (30%), Positives = 120/245 (48%), Gaps = 22/245 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ ++ F Y ++I G S+ I A++G SG GKST + + R + + EV
Sbjct: 8 IKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63
Query: 444 LIDG--------INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRV 494
++G I + L +R+++ +V +P LF S+ DN+AYG K ++ +
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
+ +A K D L I + + LSGGQ+QR+ IARA+ P++LL+DE LD
Sbjct: 124 DDIVESALKDAD-LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
Query: 555 AESEKVVQEALD--RIMVNRTTVIVAHRLSTV-RNADMIAVIHR-----GKIVEKGTHSK 606
+ V+ + R+ T VIV+H L V R +D A G++VE G K
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242
Query: 607 LVEDP 611
+ P
Sbjct: 243 IFNSP 247
|
Length = 261 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 2e-22
Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 18/247 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ ++ ++Y G +I+I G A++G +G+GKST+ + P +G +
Sbjct: 6 LKVEELNYNYS--DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELA 499
L DG I+ L +R+ +G+V Q+P LF+ S+ ++++G + E V +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----A 555
NA K GI+ L + LS GQK+R+AIA ++ +P++L+LDE T+ LD +
Sbjct: 124 NALK-----RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
E K++ E + + T +I H + V D + V+ G+++ +G ++ + E
Sbjct: 179 EIMKLLVEMQKELGL--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEML 236
Query: 615 YSQLIRL 621
+RL
Sbjct: 237 RKVNLRL 243
|
Length = 283 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 3e-22
Identities = 69/234 (29%), Positives = 119/234 (50%), Gaps = 14/234 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I L +VS+ YP ++NL I+ G+ + ++G++GSGKST+ L P G +
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1103 TLDGVEIQKL-QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKGGDA-TEAEIQAASEM 1158
+ G++ +L+ +R+ +G+V Q P T+ ++A+G EI+ +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
A A + G + LSGGQ Q VA+A + +P+ L+ DE TS LD +S
Sbjct: 120 ALA-------EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 1219 RVVQDALDRVM-KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIP 1271
V + + ++ K +T V + H L + +AD I V+ G IV +G+ EN+++
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDV 226
|
Length = 274 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 3e-22
Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 22/229 (9%)
Query: 384 IELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I + + + Q G S ++ G L+G +G+GK+T + ++ +P AG
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----G-KDDATTEEIRVA 495
+DG ++ + + R+++G VS L+ + ++N+ Y G K D T +
Sbjct: 62 ATVDGFDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ + +D+ G S G +Q++AIARA++ DP +LLLDE T+ LD
Sbjct: 121 ADRLGMEELLDRRVGG-----------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTV-RNADMIAVIHRGKIVEKG 602
+ + ++E + ++ ++ + H + V R D + V+HRG++V +G
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 3e-22
Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 38/242 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + Y A Q ++ G T L+G SG+GKS+++ ++ P++G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 444 LIDGINL------KEFQLQWIRKKIGLVSQE----PVLFTGSIKDNI--------AYGKD 485
I G + + ++ +R+ +G+V Q+ P L +++ N+ KD
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKD 116
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
A ++ L + D+ P LSGGQ+QR+AIARA++ +P++LL
Sbjct: 117 QALARAEKLLERL-RLKPYADRFPL-----------HLSGGQQQRVAIARALMMEPQVLL 164
Query: 546 LDEATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
DE T+ALD E + ++V + T VIV H + R A + + G IVE+G
Sbjct: 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
Query: 604 HS 605
S
Sbjct: 225 AS 226
|
Length = 242 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 4e-22
Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 35/253 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
I L +V+ Y + V +++ I GK AL+G SG GKSTV+ L R D
Sbjct: 14 ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 1098 DAGHITLDGVEIQKLQLK--WLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAA 1155
G + DG ++ ++ +R+++G+V Q+P F +I NIA+G + ++
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 1156 SEMANAHKFICSLQQG--YDT---MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
E SL++ +D + E G LSGGQ+QR+ IAR I +P+++L+DE
Sbjct: 131 VER--------SLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 1211 SALDAESERVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAVV-----------KNGVI 1258
SALD S +++ + + KN T V+V H + ++ +DM A K G +
Sbjct: 183 SALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242
Query: 1259 VEKGKHENLINIP 1271
VE + + + N P
Sbjct: 243 VEFNETKKIFNSP 255
|
Length = 269 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-22
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 2/210 (0%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ S S+ G L+G++GSGKST++S + R + GE+ IDG++ LQ RK
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRK 1292
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
G++ Q+ +F+G+ + N+ + + EEI E I++ P +D ++ + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
LS G KQ + +AR+IL +ILLLDE ++ LD + +++++ L + N T ++ HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 581 LSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ + VI + + + KL+ +
Sbjct: 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNE 1441
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 4e-22
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 26/223 (11%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQ 456
QI G S+++ G AL+G++G+GK+T++ I P++G + DG L +
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER- 72
Query: 457 WIRKKIGLVSQEPVLFTG-SIKDNI---AYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
R IG V + +F ++++N+ AY + A + L + +L +
Sbjct: 73 -ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA-----KRKARLERVYELFPRLKERR 126
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VN 571
L G LSGG++Q +AIARA++ P++LLLDE + L + K+V+E + I +
Sbjct: 127 KQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELR 179
Query: 572 R---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
T ++V AD V+ RG++V +GT ++L+ D
Sbjct: 180 DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 4e-22
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117
+ D++L++R G+ V L+G +G+GK+T+ +L+ FY P +G + G +I L
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-R 75
Query: 1118 RQQMGLVS--QEPVLFND-TIRANIAYG-----------KGGDATEAEIQAASEMANAHK 1163
++G+ Q LF T+ N+A G A + E +A +
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA-ESERVVQ 1222
F+ G + LS GQ++R+ IARA+ PK+LLLDE + L+ E+E + +
Sbjct: 136 FV-----GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 1223 DALD-RVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
+ R T +++ H + + AD I V+ G ++ +G
Sbjct: 191 LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 5e-22
Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 21/229 (9%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQK 1111
V+V +NL+I AL+G SGSGKST++ + R + P+A G + LDG +I K
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 1112 LQLKWLRQQMGLVSQEP-VLFNDTIRANIAYG-------KGGDATEAEIQAASEMANAHK 1163
+ + LR+++ +V Q P + N +I N+A G K + ++ A E A
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQ--- 131
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
L + +LSGGQ+QR+ IARA+ P++LL DE T+ LD E+ ++
Sbjct: 132 ----LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
Query: 1224 ALDRVMKNRTTVVVAH-RLSTIKNADMIAVVKNGVIVEKGKHENLINIP 1271
+ K+ T V+V H + +D +A + G IVE G + P
Sbjct: 188 LFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 6e-22
Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L++V + I + S S+ +G + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA--YGKDDATTEEIRVATELANA 501
L +G ++ + + R+++ +Q P LF ++ DN+ + + + +L
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLE-- 122
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+F LP DT++ ++ +LSGG+KQRI++ R + P++LLLDE TSALD ++ V
Sbjct: 123 -RF--ALP---DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
Query: 562 QEALDRIMVNRTTVI--VAHRLSTVRNADMIAVIH 594
E + R + + + V H + +AD VI
Sbjct: 177 NEIIHRYVREQNIAVLWVTHDKDEINHAD--KVIT 209
|
Length = 225 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 6e-22
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 16/239 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA- 1099
+E+ +S Y + + D+++ I AL+G SG GKST + + R D P A
Sbjct: 22 LEVKDLSIYYGEK---RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANI--AYGKGGDATEAEIQ 1153
G I +G+ I + + LR+++G+V Q+P F +I NI A G+ ++ +
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
E + +L + L LSGGQ+QR+ IAR + P +LLLDE SAL
Sbjct: 139 EIVEESLTK---AALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 1214 DAESERVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP 1271
D S +++ + + + + ++V H + ++ +D A NG +VE + E + P
Sbjct: 196 DPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSP 254
|
Length = 268 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-22
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 23/227 (10%)
Query: 384 IELRDVYFSYPA-RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E+R + +P N+ + S+S+ G AL+G++G+GKST++ ++ Y P +GE
Sbjct: 5 LEMRGITKRFPGVVANDDV----SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 443 VLIDGINLKEFQL----QWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATE 497
+ +DG KE ++ IR IG+V Q +L T ++ +NI G + + I
Sbjct: 61 IRVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117
Query: 498 LANAAKFIDK--LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-D 554
A + ++ LP D V + LS G++QR+ I +A+ + R+L+LDE T+ L
Sbjct: 118 RARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 555 AESEKVVQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIV 599
E++++ E L R+ T+I + H+L V AD + V+ RGK+V
Sbjct: 174 QEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 8e-22
Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 21/226 (9%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
Q+ + S+ I SG AL+G SGSGK+T++ +I +G + G ++ +L
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHA 71
Query: 458 IRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVAT--ELANAAKFIDKLPQGIDT 514
+K+G V Q LF ++ DNIA+G + V E NAA K+ Q ++
Sbjct: 72 RDRKVGFVFQHYALFRHMTVFDNIAFG--------LTVLPRRERPNAAAIKAKVTQLLEM 123
Query: 515 LVGEH-----GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
+ H QLSGGQKQR+A+ARA+ +P+ILLLDE ALDA+ K ++ L ++
Sbjct: 124 VQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 570 --VNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T+V V H + + AD + V+ +G I + GT ++ +P
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229
|
Length = 353 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 8e-22
Identities = 58/208 (27%), Positives = 108/208 (51%), Gaps = 9/208 (4%)
Query: 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI----TLDGVEIQK 1111
+ ++N++I G+ +VG+ G GKS+++ + G + + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
R + +Q+P L N T+ NI +G + +A ++ + I L G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFG 129
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE-SERVVQDALDRVMK 1230
T +GERG+ LSGGQ+QR+ +ARA+ ++ I+ LD+ SALD S+ ++Q+ + + ++
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 1231 N--RTTVVVAHRLSTIKNADMIAVVKNG 1256
+ RT V+V H+L + +AD I +K+G
Sbjct: 190 DDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 8e-22
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 16/241 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 440
I+++D+ F Y + G S+ I A++G SG GKST I + R + +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 441 --GEVLIDGINLKE--FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
G V G N+ + + +R++IG+V Q P F SI +N+AYG +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E+ +A L Q + + + LSGGQ+QR+ IARA+ P++LL+DE SALD
Sbjct: 125 EIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHR-----GKIVEKGTHSKLVED 610
+ V+E + + T IV H + R +D A G++VE G +++ +
Sbjct: 185 ATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244
Query: 611 P 611
P
Sbjct: 245 P 245
|
Length = 259 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 9e-22
Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 27/228 (11%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KW 1116
+Q R ++L++ G+ VAL+G +G+GK+T++ + P +G I DG +I L +
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75
Query: 1117 LRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
R + V + +F T+ N+ G A + ++ ++ L++
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLG--AYARRDKEAQERDLEEVYELFPRLKE----R 129
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR--- 1232
+R LSGG++Q +AIARA++ PK+LLLDE + L + ++V++ + + + R
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKEG 186
Query: 1233 -TTVVVAHRLSTIKNADM---IA----VVKNGVIVEKGKHENLINIPD 1272
T+++ +NA IA V++NG IV G L+ PD
Sbjct: 187 GMTILLVE-----QNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
|
Length = 237 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 9e-22
Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 47/230 (20%)
Query: 1042 EIELHHVSFKYPSRP---DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYD 1096
+ +++ S P Q+ ++++ K + G+ A++G SG+GKST+++ L +R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAA 1155
+G + ++G + L + R+ +G V Q+ +L T+R + + A
Sbjct: 63 GVSGEVLING---RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF-------------A 106
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+++ RGL SGG+++RV+IA +V +P +L LDE TS LD+
Sbjct: 107 AKL--------------------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144
Query: 1216 ESERVVQDALDRVMK-NRTTVVVAHRLST--IKNADMIAVVKNGVIVEKG 1262
S V L R+ RT + H+ S+ + D + ++ G ++ G
Sbjct: 145 SSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 9e-22
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ +++ Y ++ + DL+L + GK AL+G +G GKST++ R P +G
Sbjct: 2 TLRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKG---------GDATEAE 1151
+ L I L + L +++ L+ Q + T+R +AYG+ A
Sbjct: 59 VFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR 118
Query: 1152 IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
+ A E Q + + R LSGGQ+QR +A + +D ++LLDE T+
Sbjct: 119 VNQAME-----------QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTT 167
Query: 1212 ALDAESERVVQDALDRVMKN--RTTVVVAHRLS-TIKNADMIAVVKNGVIVEKG 1262
LD + +V L R + +T V V H L+ + D + V+ NG ++ +G
Sbjct: 168 YLDI-NHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-21
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + + F + S+ D+NL+I G VA+VG +G GK++++S + + H
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML----GELSHA 670
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
V I R + V Q +FN T+R NI +G + +E +A A H
Sbjct: 671 ETSSVVI--------RGSVAYVPQVSWIFNATVRENILFGSDFE-SERYWRAIDVTALQH 721
Query: 1163 KFICSLQQGYD-TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVV 1221
L G D T +GERG+ +SGGQKQRV++ARA+ + I + D+ SALDA V
Sbjct: 722 DL--DLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779
Query: 1222 QDA-LDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENL 1267
D+ + +K +T V+V ++L + D I +V G+I E+G L
Sbjct: 780 FDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826
|
Length = 1495 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 1e-21
Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 12/238 (5%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG- 1100
+I++ V+F Y QV +++N+ + A++G SG GKST++ L R D +G
Sbjct: 4 KIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 1101 ----HITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQA 1154
+ LD I L + LR+++G+V Q+P F +I N+A+G T A+ +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
E+ +L + + GL LSGGQ+QR+ IAR + +P+++L+DE SALD
Sbjct: 121 -DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
Query: 1215 AESERVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP 1271
S +++ + + +N T +V H + + +D + G +VE G+ + + P
Sbjct: 180 PVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237
|
Length = 251 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 20/218 (9%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG---VEIQK-LQLKWLR 1118
D N + A AL G SGSGK+++++++ PD G I L+G V+ +K + L +
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVG 1177
+++G V Q+ LF + T+R N+ YG + A+ + G + ++
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYGMW-KSMRAQFDQLVALL-----------GIEHLLD 123
Query: 1178 ERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTV 1235
LSGG+KQRVAI RA++ P++LL+DE ++LD +R + L+R+ N +
Sbjct: 124 RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPIL 183
Query: 1236 VVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272
V+H L + AD + V++NG + G E + PD
Sbjct: 184 YVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPD 221
|
Length = 352 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 1e-21
Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 43/215 (20%)
Query: 394 PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLK 451
P++ +Q+ S G A++G SG+GKST+++ + R +GEVLI+G L
Sbjct: 17 PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
+ RK IG V Q+ +L + V L AAK +G
Sbjct: 77 ---KRSFRKIIGYVPQDDILH-----------------PTLTVRETLMFAAKL-----RG 111
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV- 570
+ SGG+++R++IA ++ +P +L LDE TS LD+ S V L R +
Sbjct: 112 L-----------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLL-RRLAD 159
Query: 571 -NRTTVIVAHRLST--VRNADMIAVIHRGKIVEKG 602
RT + H+ S+ D + ++ +G+++ G
Sbjct: 160 TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-21
Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 12/213 (5%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
++I + S+S+ +G AL+G +G GKST++ R PQ+G V + + +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 458 IRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE---LANAAKFIDKLPQGID 513
+ +++ L+ Q + G ++++ +AYG+ + R++ E N A +++ I+
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA--MEQT--RIN 129
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-- 571
L T LSGGQ+QR +A + +D ++LLDE T+ LD + +V L R +
Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI-NHQVELMRLMRELNTQG 188
Query: 572 RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT 603
+T V V H L+ R D + V+ G ++ +GT
Sbjct: 189 KTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 1e-21
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 22/231 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ L VS+ R V +++ G L+G +GSGKST++ LL PDAG
Sbjct: 1 GLRLSRVSWSAGGRLIVD---GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQE-PVLFNDTIRANIAYGK-------GGDATEAEIQ 1153
+ L GV++ L + +++ LV Q+ T+R +A G+ GD + +
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGD-SPHDAA 116
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
+ + T LSGG++QRV +ARA+ ++PK+LLLDE T+ L
Sbjct: 117 VVDRALARTELSHLADRDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHL 168
Query: 1214 DAESERVVQDALDRVMKNRTTVVVA-HRLS-TIKNADMIAVVKNGVIVEKG 1262
D ++ + + TVV A H L+ D + V+ G +V G
Sbjct: 169 DVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 1e-21
Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 25/241 (10%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLN---LKIRAGKTVALVGESGSGKSTVVSLLQRF 1094
D +I L +VS+ Y + + F+ LN L + K ++G +GSGKST++ L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFE-FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60
Query: 1095 YDPDAGHITLDGVEI----QKL-QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK---G 1144
+ G + I +K+ ++K LR+++GLV Q P LF +TI +IA+G G
Sbjct: 61 IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLG 120
Query: 1145 GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKIL 1204
+ EA + E+ + L + Y V +LSGGQK+RVA+A I D L
Sbjct: 121 ENKQEA-YKKVPELLK----LVQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTL 172
Query: 1205 LLDEATSALDAESERVVQDALDRVMKN--RTTVVVAHRLSTI-KNADMIAVVKNGVIVEK 1261
+LDE T LD + E + +R+ K + ++V H + + + AD + V+ G ++
Sbjct: 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232
Query: 1262 G 1262
G
Sbjct: 233 G 233
|
Length = 289 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 25/238 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + +VS Y ++ V D++L I G +++G +G+GKST++S++ R D+G I
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYG-----KGGDATEAE--IQA 1154
T+DG+E+ K L +++ ++ QE + T+R + +G +G E I
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
A E + + L Y +LSGGQ+QR IA + +D +LLDE + LD
Sbjct: 119 AIEYLH----LEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
Query: 1215 AESERVVQDALDRVMK--NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLIN 1269
+ + L R+ +T VVV H ++ +D I +KNG +V++G + +I
Sbjct: 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-21
Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 21/210 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+S+ G ++G +GSGKST++ + ++ G V W + I V
Sbjct: 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAERSIAYV 726
Query: 466 SQEPVLFTGSIKDNIAY-GKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
Q+ + +++ NI + ++DA + +RV+ A+ A+ L G++T +GE G
Sbjct: 727 PQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQ----LGGGLETEIGEKGVN 782
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRL 581
LSGGQK R+++ARA+ + + LLD+ SALDA E+VV+E + +T V+ H++
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
V AD + + G++ G+ + +
Sbjct: 843 HVVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
Length = 1560 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 2e-21
Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 6/230 (2%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G++ + ++ KY + V +++ I G+ V L+G +GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKYTEGGNA-VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI-AYGKGGDATEAEIQAASEMA 1159
I +DGV + L+ R+ G++ Q+ +F+ T R N+ YGK D EI +E
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDE---EIWKVAEEV 115
Query: 1160 NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
I D ++ + G LS G KQ + +AR+++ KILLLDE ++ LD + +
Sbjct: 116 GLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175
Query: 1220 VVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
V++ L + + T ++ HR+ + V++ + + + L+N
Sbjct: 176 VIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 2e-21
Identities = 63/221 (28%), Positives = 119/221 (53%), Gaps = 14/221 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL+ V + I + S+S+ +G A+ G SG GKST++ ++ P +G +
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV-ATELANAA 502
L +G ++ + + R+++ +Q P LF +++DN+ + +IR + A A
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF------PWQIRNRRPDRAAAL 114
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + D+++ ++ T+LSGG+KQRIA+ R + P+ILLLDE TSALD +++ ++
Sbjct: 115 DLLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173
Query: 563 EALDRIMV--NRTTVIVAH-RLSTVRNADMIAVIHRGKIVE 600
E + R + N + + H + +R+AD + + G E
Sbjct: 174 EMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 2e-21
Identities = 76/267 (28%), Positives = 132/267 (49%), Gaps = 26/267 (9%)
Query: 379 DIRGDIELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
D DI L +V ++Y + P E + + S++ ++G +GSGKST+I L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 437 DPQAGEVLIDG----INLKEF-QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATT 489
+ G+ ++ NLK+ +++ +RK+IGLV Q P LF +I+ +IA+G +
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
+ ++ K + +LP+ V +LSGGQK+R+A+A I D L+LDE
Sbjct: 122 NKQEAYKKVPELLKLV-QLPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 550 TSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTH-- 604
T LD + E+ +R+ + ++V H + V R AD + V+H GK++ G+
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 605 --------SKLVEDPEGAYSQLIRLQE 623
+K+ DP Y + +L+
Sbjct: 238 IFSNQELLTKIEIDPPKLYQLMYKLKN 264
|
Length = 289 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 2e-21
Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 20/242 (8%)
Query: 384 IELRDVYFSY-PARPNEQI-FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I+ +V + Y P P E+ S + G+ ALVG +GSGKST++ P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 442 EVLIDG----INLKEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGKDD--ATTEEIR 493
+ I G L+ +RKK+ LV Q E LF ++ ++ +G + + +E +
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A K++ K+ G+ + +LSGGQ +R+AIA + +P IL LDE +
Sbjct: 123 EK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 553 LDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
LD E K ++Q D T ++V H + V AD + V+ GK+++ + ++ D
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235
Query: 611 PE 612
E
Sbjct: 236 KE 237
|
Length = 287 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 3e-21
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 30/225 (13%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF- 453
A+ + + S+SI G T L+G+SG GKST+ L+ P G V G +L +
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79
Query: 454 --QLQWIRKKIGLVSQE---PVLFTGSIKDNIA-----YGKDDATTEEIRVATELANA-- 501
Q + R+ + LV Q+ V +++ I D + ++ R+A EL +
Sbjct: 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIA-ELLDMVG 138
Query: 502 --AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
++ DKLP+ QLSGGQ QRI IARA+ P++++LDEA S LD +
Sbjct: 139 LRSEDADKLPR-----------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187
Query: 560 VVQEALDRIMVNRTT--VIVAHRLSTV-RNADMIAVIHRGKIVEK 601
V+ E L ++ T + + H L V +AV+ +G+IVE+
Sbjct: 188 VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 35/234 (14%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI--QKLQL 1114
RD ++ IR + +G SG GKSTV+ L R D GH+ G ++ + +
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYG------KG--GDATEAEIQAASEMANAHKFIC 1166
+R+ +G+V Q+P F+ +I N+A+G KG GD + +Q A+
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA---------- 134
Query: 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD 1226
L + GL LSGGQ+QR+ IARAI +P++LLLDE SALD + R V++ +
Sbjct: 135 -LWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193
Query: 1227 RVMKNRTTVVVAHRL-STIKNADMIAVV--------KNGVIVEKGKHENLINIP 1271
+ K+ T +V H + I+ AD A + G +VE G + P
Sbjct: 194 ELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 4e-21
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E R++ R + S+++ G A++G +G+GKST++ + P +GEV
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGKDDATTEEIRVATELANAA 502
++G L ++ + ++ ++ Q L F ++++ +A G+ +A A
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA- 118
Query: 503 KFIDKLPQ-GIDTLVGEHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALD- 554
L Q + L G QLSGG++QR+ +AR + PR LLLDE TSALD
Sbjct: 119 -----LAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 555 AESEKVVQEALDRIMVNRTTVI-VAHRLS-TVRNADMIAVIHRGKIVEKGT 603
A V++ A VI V H L+ R AD I ++H+G++V GT
Sbjct: 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 4e-21
Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 23/244 (9%)
Query: 1043 IELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I+ +V + Y P P + + +++ ++ G VALVG +GSGKST++ P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1101 HITLDGVEIQ----KLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEAE 1151
IT+ G I LK LR+++ LV Q E LF +T+ ++ +G G EA+
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 1152 IQAASEMANAHKFICSLQQGYDTMVGERG-LQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
+A + + G + + +LSGGQ +RVAIA + +P+IL LDE
Sbjct: 123 EKALKWLK---------KVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 1211 SALDAES-ERVVQDALDRVMKNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLI 1268
+ LD E + ++Q D T ++V H + + + AD + V+++G +++ + +
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 1269 NIPD 1272
+ +
Sbjct: 234 SDKE 237
|
Length = 287 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 5e-21
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QK 1111
+++NL I + A++G SG GKST + L P+ G + +G I K
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK--GGDATEAEIQAASEMANAHKFICSLQ 1169
+ L LR+ +G+V Q+ F +I N+AYG G + ++Q E + +L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD---VALW 142
Query: 1170 QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
+ + L LSGGQ+QR+ IARA+ +P +LL+DE TSALD S R +++ + ++
Sbjct: 143 DEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202
Query: 1230 KNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIPD 1272
+ T V+V H + + +D A G +VE + + PD
Sbjct: 203 EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 6e-21
Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 16/225 (7%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +++NLKI G+ +A+ G +GSGK++++ L+ +P G I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGER 1179
++ SQ + TI+ NI +G D E ++ + + I + +T++GE
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER-VVQDALDRVMKNRTTVVVA 1238
G+ LSGGQ+ R+++ARA+ KD + LLD LD +E+ + + + ++M N+T ++V
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT 216
Query: 1239 HRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHS 1283
++ +K AD I ++ G G L ++ F + L+ +
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDT 261
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (236), Expect = 6e-21
Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 10/236 (4%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PD 1098
E+ + +F Y +R V DLNL I+ K A +G SG GKST + L + D
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1099 AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
G I G +K+ LR ++G+V Q+P F +I N+AYG +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+ + K + D + + G LSGGQ+QR+ IARAI +P++LL+DE TSALD
Sbjct: 201 IVEKSLKSAALWDEVKDDL-DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259
Query: 1217 SERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
+ +++ + + K + ++V H ++ + +D G I E G+ + + P
Sbjct: 260 ATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315
|
Length = 329 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 7e-21
Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 15/239 (6%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD----- 1096
+I++ +++ Y + Q ++++++I AL+G SG GKST + L R D
Sbjct: 12 QIKVENLNLWYGEK---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 1097 PDAGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG-KGGDATEAEIQ 1153
G ++++G +I + + LR+ +G+V Q+P F +I N+AYG + A + ++
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
E NA + + D + L LSGGQ+QR+ IAR + PKI+L DE TSAL
Sbjct: 129 GVVE--NALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
Query: 1214 DAESERVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP 1271
D S ++D + + K+ T V+V H + + +D G ++E G+ + + P
Sbjct: 186 DPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNP 244
|
Length = 258 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 7e-21
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 26/241 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I ++S+ S ++ ++L +R G+ +A++G +G+GKST++ L PD+G +
Sbjct: 2 IRAENLSY---SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRA-----NIAYGKGGDATEAEIQAAS 1156
TL+GV + + L + ++ Q L F T++ I + G + E E AA
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR------AIVKDPKILLLDEAT 1210
+A + G LSGG++QRV +AR V + L LDE T
Sbjct: 119 ALAAT---------DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPT 169
Query: 1211 SALD-AESERVVQDALDRVMKNRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLI 1268
SALD A ++ A + + V H L+ + AD I ++ G ++ G ++++
Sbjct: 170 SALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
Query: 1269 N 1269
Sbjct: 230 T 230
|
Length = 259 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 7e-21
Identities = 74/239 (30%), Positives = 123/239 (51%), Gaps = 33/239 (13%)
Query: 1043 IELHHVSFKY---PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
++L +++ Y P R +L + G+ VA++G SG+GKST+++L+ F P +
Sbjct: 2 LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG--KGGDATEAEIQAAS 1156
G +TL+G + R+ + ++ QE LF+ T+ NI G G A+ +
Sbjct: 54 GSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH 111
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+A Q G + ++ QLSGGQ+QRVA+AR +V++ ILLLDE SALD
Sbjct: 112 AIAR--------QMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
Query: 1217 SERVVQDALDRVMKNR--TTVVVAHRLSTIKNADMIA----VVKNGVIVEKGKHENLIN 1269
+ + + +V + R T ++V+H L +A IA VV +G I G + L++
Sbjct: 164 LRQEMLTLVSQVCQERQLTLLMVSHSLE---DAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 8e-21
Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 18/228 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQK 1111
D Q +++NL ++ G AL+G SG GK+T + + R +D P A G I LDG +I
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 1112 LQLK--WLRQQMGLVSQEPVLFN-----DTIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
++ +R+++G+V Q+P F D + A + D A + A
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGA--- 132
Query: 1165 ICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDA 1224
+L + LSGGQ+QR+ IARA+ +P+ILL+DE TSALD S ++D
Sbjct: 133 --ALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 1225 LDRVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP 1271
+ + K T ++V H + + +D + G +VE G + L P
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 9e-21
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 30/233 (12%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QKLQL 1114
+++ L I + A +G SG GKST++ R D P G +T G + +
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQG--Y 1172
+R+++G+V Q+P F +I NIAYG + + ++ E SL+Q +
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER--------SLRQAALW 138
Query: 1173 DTM---VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
D + + + GL LSGGQ+QR+ IARAI P+++L+DE SALD S +++ + +
Sbjct: 139 DEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198
Query: 1230 KNRTTVVVAHRL-STIKNADMIAVV---------KNGVIVEKGKHENLINIPD 1272
+ T ++V H + + +DM A + G +VE + E + N P
Sbjct: 199 EQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQ 251
|
Length = 264 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 9e-21
Identities = 85/280 (30%), Positives = 125/280 (44%), Gaps = 65/280 (23%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439
G + L DV+ PA+ +I A +G SG GKST++ R D P
Sbjct: 32 GFLALVDVHLKIPAK---KII-------------AFIGPSGCGKSTLLRCFNRMNDLIPG 75
Query: 440 A---GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYGK---------D 485
A G +L N+ + Q+ + R+++G+V Q P F SI +NIA+ D
Sbjct: 76 AKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD 135
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
+ + +R A + K DKL E GT LSGGQ+QR+ IARAI P +LL
Sbjct: 136 ELVEDSLRRAA-IWEEVK--DKLK--------EKGTALSGGQQQRLCIARAIAMKPDVLL 184
Query: 546 LDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIH---------R 595
+DE SALD S + V+E + T ++V H + R AD A + R
Sbjct: 185 MDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRR 244
Query: 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
GK+VE ++ P+ KE+ + I G+
Sbjct: 245 GKLVEFSPTEQMFGSPQ------------TKEAREYISGR 272
|
Length = 274 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 1e-20
Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 18/233 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ FKY DV ++ I G+ V+++G++GSGKST L+ ++ G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG--KGGDATEAEIQAASEM 1158
+DG + + LR+++G+V Q P T+ ++A+G G E I+ E
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD---- 1214
A + + T R LSGGQKQRVA+A I P+I++LDE+TS LD
Sbjct: 125 LLAVNML-----DFKTREPAR---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 1215 AESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENL 1267
E RV+ + ++ T + + H L ++D I V+K G I+++ L
Sbjct: 177 QEIMRVIHEIKEKY--QLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
|
Length = 277 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-20
Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 25/229 (10%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +LNL I+ G V L+G SG GK+TV+ L+ P G I +DG ++ ++ ++
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR 78
Query: 1120 QMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA----ASEMANAHKFICSLQQGYD 1173
+ +V Q LF + ++ N+ YG K + E + A E+ + F
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF--------- 129
Query: 1174 TMVGERGL-QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK-- 1230
+R + Q+SGGQ+QRVA+ARA++ PK+LL DE S LDA R +++ + + +
Sbjct: 130 ---EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF 186
Query: 1231 NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIPDG-FYAS 1277
N T++ V H S +D + V+ G I++ G + L P F AS
Sbjct: 187 NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMAS 235
|
Length = 351 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 1e-20
Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 40/229 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---- 450
++ + + S+S+ SG T AL+G+SG GKST+ L+ P G V G L
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
Query: 451 ----KEFQ--LQWI----------RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV 494
K F+ +Q + RK + + +EP+ S+ + A E+
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK----AERLARASEMLR 136
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A +L +DK P QLSGGQ QR+ +ARA+ +P++L+LDEA S LD
Sbjct: 137 AVDLD--DSVLDKRPP-----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
Query: 555 AESEKVVQEALDRIMVNRTT--VIVAHRLSTV-RNADMIAVIHRGKIVE 600
+ V L ++ T + + H L V R + V+ G+IVE
Sbjct: 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-20
Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 38/232 (16%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ ++P V D++L ++ G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1103 TLDGVEIQKLQLK----WLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASE 1157
+DG +++++K +R +G+V Q +L T+ NI G E +
Sbjct: 62 RVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGL-----EPSKGGLID 113
Query: 1158 MANAHKFICSLQQGY------DTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
A I L + Y D V + LS G++QRV I +A+ + ++L+LDE T+
Sbjct: 114 RRQARARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTA 169
Query: 1212 AL-DAESERVVQDALDRVMKN-----RTTVVVAHRLSTIKN-ADMIAVVKNG 1256
L E++ L +++ +T + + H+L + AD + V++ G
Sbjct: 170 VLTPQEADE-----LFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-20
Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 1043 IELHHVSFKYPS------RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ V+ Y + + V +++L I G+TV L+G SG GKST+ LL
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 1097 PDAGHITLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFN--DTIRANIA--YGKGGDAT 1148
P G ++ G ++ +L Q + R+ + LV Q+ P N T+R I
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 1149 EAEIQA-ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207
E+E +A +E+ + QLSGGQ QR+ IARA+ PK+++LD
Sbjct: 123 ESEQKARIAELLDMVGLRSEDADKLPR-------QLSGGQLQRINIARALAVKPKLIVLD 175
Query: 1208 EATSALDAESERVVQDALDRVMKNRTT--VVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261
EA S LD + V+ + L ++ + T + + H L +++ +AV+ G IVE+
Sbjct: 176 EAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-20
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 13/215 (6%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQ--K 1111
D+ + I + AL+G SG GKST++ R D P G I +G I
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK--GGDATEAEIQAASEMANAHKFICSLQ 1169
+ LR+++G+V Q P F +I N+AYG G+ + + E + +L
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKG---AALW 136
Query: 1170 QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
+ + L LSGGQ+QR+ IAR + +P+++L+DE SALD + ++D ++ +
Sbjct: 137 DEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196
Query: 1230 KNRTTVVVAHRLSTIKNA-DMIAVVKNGVIVEKGK 1263
K T ++V H + D + G ++E K
Sbjct: 197 KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231
|
Length = 253 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 23/217 (10%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QK 1111
+ + ++L + AL+G SG GKST + L R D P G+++L G I
Sbjct: 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK--GGDATEAEIQAASEMANAHKFICSLQ 1169
+ LR+Q+G+V Q+P F +I N+ YG G +A + A E SL+
Sbjct: 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVET--------SLK 130
Query: 1170 QG--YDTM---VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDA 1224
Q +D + + E L LSGGQ+QRV IAR + P ++LLDE TSALD S +++
Sbjct: 131 QAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM 190
Query: 1225 LDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVE 1260
L + T ++V H + +D A G ++E
Sbjct: 191 LLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 2e-20
Identities = 74/237 (31%), Positives = 108/237 (45%), Gaps = 50/237 (21%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW--------- 457
+ I +G SG GKSTV+ + R D L+ G E + +
Sbjct: 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMND------LVKGFRF-EGHVHFLGQDVYGKG 81
Query: 458 -----IRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---K 503
+R+ IG+V Q+P F+ SI DN+A+G K D RV L AA +
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGD---RVKHALQGAALWDE 138
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DKL G LSGGQ+QR+ IARAI +P +LLLDE SALD + + V+E
Sbjct: 139 VKDKLKVS--------GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190
Query: 564 ALDRIMVNRTTVIVAHRL-STVRNADMIAVI--------HRGKIVEKGTHSKLVEDP 611
+ + + T +V H + +R AD A G +VE G +++ ++P
Sbjct: 191 LMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-20
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 41/200 (20%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-------IDGINLKE 452
+ S+++++G AL G SG+GKST++ + Y P +G +L +D
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 453 FQLQWIRKK-IGLVSQ---------------EPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
++ +R+K IG VSQ EP+L G + A + + +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNIPE 140
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
L + SGG++QR+ IAR + D ILLLDE T++LDA
Sbjct: 141 RLWHLPP-----------------ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 557 SEKVVQEALDRIMVNRTTVI 576
+ +VV E + +I
Sbjct: 184 NRQVVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-20
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 17/201 (8%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
+ +NL I+ G+ ++L+G SG GKST+++L+ P +G + L+G +I + +M
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRM 57
Query: 1122 GLVSQEPVLFNDTIRANIAYGKGG---DATEAEIQAASEMANAHKFICSLQQGYDTMVGE 1178
+ +L T+R NIA D +++E +A E H + L + D +
Sbjct: 58 VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVE---EHIALVGLTEAAD----K 110
Query: 1179 RGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK-NRTTVV- 1236
R QLSGG KQRVAIARA+ PK+LLLDE ALDA + +Q+ L ++ + +R TV+
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 1237 VAHRL-STIKNADMIAVVKNG 1256
V H + + +D + ++ NG
Sbjct: 171 VTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 3e-20
Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 38/250 (15%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD------- 1096
E++ ++F Y Q +++N+ + + AL+G SG GKST + R +D
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 1097 -------PDAGHI---TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD 1146
PD +I +D +E+ R ++ +V Q+P F +I N+AYG
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEV--------RMRISMVFQKPNPFPKSIFENVAYGLRIR 126
Query: 1147 ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLL 1206
+ + NA + + D + G+ LSGGQ+QR+ IARA+ DP+ILL
Sbjct: 127 GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLF 185
Query: 1207 DEATSALD----AESERVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEK 1261
DE TSALD A E ++ D ++V T ++V H + + +D A + G ++E
Sbjct: 186 DEPTSALDPIATASIEELISDLKNKV----TILIVTHNMQQAARVSDYTAYMYMGELIEF 241
Query: 1262 GKHENLINIP 1271
G + + P
Sbjct: 242 GATDTIFIKP 251
|
Length = 265 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 62/218 (28%), Positives = 116/218 (53%), Gaps = 12/218 (5%)
Query: 393 YPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
+ P E + +G S+ I+ G ++G +G+GKST+++ I P +G++LIDG+++
Sbjct: 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT 71
Query: 452 EFQLQWIR-KKIGLVSQEPVLFTG---SIKDNIAYGKDDATTEEIRVATELANAAKF--- 504
+ R + V Q+P+ T +I++N+A + + A + F
Sbjct: 72 KKS-VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
+ +L G++ + + LSGGQ+Q +++ A L P+ILLLDE T+ALD ++ + V E
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 565 LDRIMVNR--TTVIVAHRL-STVRNADMIAVIHRGKIV 599
+I+ TT++V H + + + + ++H GKIV
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 4e-20
Identities = 63/230 (27%), Positives = 120/230 (52%), Gaps = 22/230 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + +V SY + + S+ I G +++G +G+GKST++S++ R +GE+
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK----DDATTEEIRVATEL 498
IDG+ L + + KK+ ++ QE + + +++D + +G+ T+E R +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR---RI 115
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD---- 554
N A I+ L ++ L + +LSGGQ+QR IA + +D +LLDE + LD
Sbjct: 116 INEA--IEYL--HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 555 AESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
+ K+++ D + +T V+V H ++ +D I + GK+V++G+
Sbjct: 172 VQIMKILRRLADEL--GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 4e-20
Identities = 71/209 (33%), Positives = 104/209 (49%), Gaps = 12/209 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQKLQLKW- 1116
D++LKI A K +A +G SG GKST++ R D P A G + I Q+
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 1117 -LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
LR+Q+G+V Q P F +I NIA+ + + + E+ ++ +
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNL---DELVEDSLRRAAIWEEVKDK 154
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTV 1235
+ E+G LSGGQ+QR+ IARAI P +LL+DE SALD S R V++ + + T +
Sbjct: 155 LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTII 214
Query: 1236 VVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
+V H + AD A N I E GK
Sbjct: 215 MVTHNMQQASRVADWTAFF-NTEIDEYGK 242
|
Length = 274 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 5e-20
Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 14/230 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++ YFS+ ++ ++ S ++ I G+ A+VG +G GK+++IS
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLIS------------A 662
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
++ ++ E IR + V Q +F ++++NI +G D + R A ++
Sbjct: 663 MLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWR-AIDVTALQH 721
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQ 562
+D LP T +GE G +SGGQKQR+++ARA+ + I + D+ SALDA + +V
Sbjct: 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + +T V+V ++L + D I ++ G I E+GT ++L +
Sbjct: 782 SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGS 831
|
Length = 1495 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 5e-20
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 28/233 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E + + YP + + +N K G+ VAL+G +G+GKST+ P +G +
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DATEAEIQAASE 1157
+ G I+ K L +R+ +G+V Q P LF T+ ++A+G ++ E++ +
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQ------LSGGQKQRVAIARAIVKDPKILLLDEATS 1211
A L+ VG G + LSGGQK+RVAIA + P+I++LDE TS
Sbjct: 120 EA--------LKA-----VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
Query: 1212 ALDAESERVVQDALDRVMKNRTTVVVA-HRLSTI-KNADMIAVVKNGVIVEKG 1262
LD + L + K T++++ H + + AD + V+ +G I+++G
Sbjct: 167 GLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 6e-20
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 34/208 (16%)
Query: 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGE------VLID---GINLKEFQLQWIRK 460
+ G TA + G+SG+GK+++I+ I PQ G VL D GI L + +
Sbjct: 23 AQGITA-IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK-----R 76
Query: 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTLVG 517
+IG V Q+ LF ++ N+ YG + A+F DK+ GI+ L+
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGMAKS------------MVAQF-DKIVALLGIEPLLD 123
Query: 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTV 575
+ LSGG+KQR+AI RA+L P +LL+DE ++LD ++ + L+R+ +N +
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
Query: 576 IVAHRLSTV-RNADMIAVIHRGKIVEKG 602
V+H L + R AD + V+ +GK+ G
Sbjct: 184 YVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQ 456
++ G S+SI G A+VG SGSGKST++ L+ +P +GEVL +G +L + +
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78
Query: 457 WIR-KKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKLP 509
+R KK+G + Q L + +N+A K +E A + ++K+
Sbjct: 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER--------AYEMLEKV- 129
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
G++ + ++LSGG++QR+AIARA++ P ++L DE T LD + K++ + + +
Sbjct: 130 -GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188
Query: 570 VNRTT--VIVAHRLSTVRNADMIAVIHRGKIVE 600
T ++V H L + D + + G++
Sbjct: 189 RELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 7e-20
Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 21/244 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA--- 1099
I++ +SF Y + ++ +++ I K A++G SG GKST + L R + +
Sbjct: 8 IKVKDLSFYYNTSKAIE---GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK--GGDATEAEIQ 1153
G + G I ++ + LR+Q+G+V Q P F +I N+AYG +A++
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
E A +L Q + + L LSGGQ+QR+ IARA+ PK+LL+DE SAL
Sbjct: 125 EIVESALKG---AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181
Query: 1214 DAESERVVQDALDRVMKNRTTVVVAHRL-STIKNADMIAVVKN-----GVIVEKGKHENL 1267
D + V++ + + T +V H + + +D A G +VE G +
Sbjct: 182 DPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241
Query: 1268 INIP 1271
+ P
Sbjct: 242 FSNP 245
|
Length = 259 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 7e-20
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL- 1117
+ R ++L++ G+ ++G +G GK+T++ L +G I LDG +I KL
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 1118 RQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYD--- 1173
R + V Q +F T+ N+ G + + + I + Y+
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTG------------LAALPRRSRKI--PDEIYELFP 119
Query: 1174 ---TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD----AESERVVQDALD 1226
M+G RG LSGGQ+Q++AIARA+V PK+LLLDE T + + RV++
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 1227 RVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267
++V L + AD V++ G +V G + L
Sbjct: 180 E--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 9e-20
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 40/245 (16%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKS-TVISLIERFYDPQA----GEVLIDGINL---K 451
+ + S+ I +G T ALVG+SGSGKS T +S++ P G++ G +L
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 452 EFQLQWIR-KKIGLVSQEPVLFTG---SIKDNIA--------YGKDDATTEEI----RVA 495
E L+ +R KI ++ QEP++ +++ + ++ A E + RV
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVG 142
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ AAK + P QLSGG++QR+ IA A+L P +L+ DE T+ALD
Sbjct: 143 --IRQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189
Query: 556 ESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + +N + + H LS VR AD +AV+ G+ VE+ + L P
Sbjct: 190 SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPT 249
Query: 613 GAYSQ 617
Y+Q
Sbjct: 250 HPYTQ 254
|
Length = 529 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 9e-20
Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 26/249 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++R V F+ R N IF S+++ G A++G SG GK+T++ LI P GE+
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
L DG N + +L +RK++ ++ Q LFT ++ DN+AY E ++ L
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY----PLREHTQLPAPLL 120
Query: 500 NAAKFIDKLPQGIDTLVGEHG------TQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
++ + KL VG G ++LSGG +R A+ARAI +P +++ DE
Sbjct: 121 HSTVMM-KLEA-----VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 554 DAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
D + V+ + + + + T V+V+H + V + AD ++ KIV G+ L +
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234
Query: 611 PEGAYSQLI 619
P+ Q +
Sbjct: 235 PDPRVRQFL 243
|
Length = 269 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 23/234 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IEL++V + I S ++ G A+VG +G+GK+T++SL+ + P +G+V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 444 LIDGINLKEFQLQW-IRKKIGLVS---QEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
+ G + + + +RK+IGLVS E +++D + G + T
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 500 -NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
AA+++ +L G L LS G+++R+ IARA++KDP +L+LDE LD +
Sbjct: 149 LAAAQWLLEL-LGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 559 KVVQEALDRIMVNR---TTVIVAHRLSTVRNADMIAVIHR------GKIVEKGT 603
+ + L+ + + + V H ++ G++V +G
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHA-----EEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 1e-19
Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 9/223 (4%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
D + ++N+KI AL+G SG GKST + L R D G++ +G I
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ 1169
+ LR+++G+V Q P F +I NI+YG T+ + + E+ +L
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDK-KKLDEIVEQSLKKSALW 137
Query: 1170 QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
+ L LSGGQ+QR+ IAR + +P ++L+DE TSALD S +++ + +
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK 197
Query: 1230 KNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLINIP 1271
++ T ++V H + + +D A NG I E+ + L P
Sbjct: 198 ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNP 240
|
Length = 254 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-19
Identities = 73/237 (30%), Positives = 107/237 (45%), Gaps = 61/237 (25%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI---QKLQLKWLRQQMGLV 1124
+ GKT+A+VGESG GKST+ LL P G + G ++ K LRQ++ +V
Sbjct: 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV 97
Query: 1125 SQ-----------------EPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICS 1167
Q EP+L N ++ A E +A + MA
Sbjct: 98 FQNPYGSLNPRKKVGQILEEPLLINTSL----------SAAERREKALAMMA-------- 139
Query: 1168 LQQGYDTMVGERGLQ-------LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
VG R SGGQ+QR+AIARA++ DP +++ DE SALD +
Sbjct: 140 -------KVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQ 192
Query: 1221 VQDALDRVMK-----NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
V L+ +M + V ++H LS +++ AD + V+ G VEKG E + N P
Sbjct: 193 V---LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246
|
Length = 327 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-19
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 26/214 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA- 1099
I++ ++ Y S V+ D+NL I A +G SG GKSTV+ L R ++ P A
Sbjct: 5 IDVKDLNIYYGSFHAVE---DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG-------KGGDA 1147
G + LDG ++ + +R+ +G+V Q P F +IR N+ G D
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 1148 TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207
E ++ + AN L + + G LSGGQ+QR+ IARAI +P +LL+D
Sbjct: 122 DEL-VEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 1208 EATSALDAESERVVQDALDRVMKNRTTVVVAHRL 1241
E SALD S ++D ++ + ++ T V+V H +
Sbjct: 174 EPCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-19
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 27/223 (12%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QKLQL 1114
++L + AL+G SGSGKST++ + R D P+ G I +G I +
Sbjct: 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGK--GGDATEAEIQAASEMANAHKFICSLQQG- 1171
LR+++G+V Q+P F +I N+ YG G + + A E SL+
Sbjct: 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK--------SLKGAS 133
Query: 1172 -YDTM---VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDR 1227
+D + + + L LSGGQ+QRV IAR + PKI+LLDE TSALD S +++ L
Sbjct: 134 IWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193
Query: 1228 VMKNRTTVVVAHRL---STIKNADMIAVVKNGVIVEKGKHENL 1267
+ + T ++V + S I +D +G ++E + +
Sbjct: 194 LKDDYTMLLVTRSMQQASRI--SDRTGFFLDGDLIEYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 1e-19
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 52/206 (25%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-------TLDGVEIQK 1111
V ++++L + AG+ VAL G SG+GKST++ L Y PD+G I +D +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 1112 LQLKWLRQQ-MGLVSQ---------------EPVLFNDTIRANIAYGKGGDATEAEIQAA 1155
++ +R++ +G VSQ EP+L G A +A
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-----------GVPREAARARAR 130
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQL-----SGGQKQRVAIARAIVKDPKILLLDEAT 1210
+A + + ER L SGG++QRV IAR + D ILLLDE T
Sbjct: 131 ELLARLN-------------IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177
Query: 1211 SALDAESERVVQDALDRVMKNRTTVV 1236
++LDA + +VV + + ++
Sbjct: 178 ASLDAANRQVVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 1e-19
Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 33/239 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+ +V +Y D V L+ ++ G+ L+G +G+GK+T + +L PDAG I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIA-----YGKGGDATEAEIQAAS 1156
+L G + + + RQ++G+V Q L D T+R N+ +G A A +
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLL 123
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
E A L+ D VGE LSGG K+R+ +ARA+V DP +L+LDE T+ LD +
Sbjct: 124 EFAK-------LENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ 172
Query: 1217 SERVVQDALDRVMKNRTTVVV-------AHRLSTIKNADMIAVVKNGVIVEKGKHENLI 1268
+ ++ + L ++ T+++ A RL D + V++ G + +G LI
Sbjct: 173 ARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 2e-19
Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 16/225 (7%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V ++++ K+ G+ +A+ G +GSGKS+++ ++ +P G I G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGER 1179
++ Q + TI+ NI +G D E + + + I + T++GE
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER-VVQDALDRVMKNRTTVVVA 1238
G+ LSGGQ+ R+++ARA+ KD + LLD + LD +E+ + + L ++M N+T ++V
Sbjct: 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVT 605
Query: 1239 HRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHS 1283
+L +K AD I ++ GV G L F + L+ L +
Sbjct: 606 SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEA 650
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-19
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 40/239 (16%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-------- 1110
+V + ++L+ AG ++++G SGSGKST + + P G I ++G I
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 1111 -----KLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQA-----ASEMA 1159
K QL+ LR ++ +V Q L++ T+ N+ EA IQ
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV--------MEAPIQVLGLSKQEARE 130
Query: 1160 NAHKFICSLQQGYDTMV-GERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
A K++ + G D G+ + LSGGQ+QRV+IARA+ +P++LL DE TSALD E
Sbjct: 131 RAVKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE-- 186
Query: 1219 RVVQDALDRVMKN-----RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
+V + L R+M+ +T VVV H + ++ + + + G I E+G E L P
Sbjct: 187 -LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNP 243
|
Length = 257 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 38/223 (17%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
I G ++ G+ L+G +GSGKST++ L+ P AG V + G++L + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 461 KIGLVSQE-----PVLFTGSIKDNIAYGK-------------DDATTEEIRVATELANAA 502
++ LV Q+ P+ +++D +A G+ D A + TEL++ A
Sbjct: 76 RVALVEQDSDTAVPL----TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA 131
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + TL SGG++QR+ +ARA+ ++P++LLLDE T+ LD ++
Sbjct: 132 D------RDMSTL--------SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 563 EALDRIMVNRTTVIVA-HRLS-TVRNADMIAVIHRGKIVEKGT 603
+ + TV+ A H L+ D + V+ G++V G
Sbjct: 178 ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 25/234 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I ++ +S R ++ G S+ + G A++G +G+GKST++ + P +GEV
Sbjct: 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKD-----NIAYGKDDATTEEIRVATE 497
++G+ L + + + + ++ Q L F ++++ I + E+ R+A +
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR------AILKDPRILLLDEATS 551
A + L G LSGG++QR+ +AR + R L LDE TS
Sbjct: 119 ALAAT--------DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170
Query: 552 ALD-AESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
ALD A ++ A + V H L+ + AD I ++H+G+++ G+
Sbjct: 171 ALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-19
Identities = 66/231 (28%), Positives = 125/231 (54%), Gaps = 15/231 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L VS Y + V L+ + +G+ L+G +G+GKST+ ++ PDAG I
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRAN-IAYGKGGDATEAEIQAASEMAN 1160
T+ GV + + + R ++G+V Q L + T+R N + +G+ + EI+A + +
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV--IPS 155
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
+F L+ D V + LSGG K+R+ +ARA++ DP++L+LDE T+ LD + +
Sbjct: 156 LLEF-ARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210
Query: 1221 VQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
+ + L ++ + +T ++ H + + D + V++ G + +G+ LI+
Sbjct: 211 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261
|
Length = 340 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 73/215 (33%), Positives = 107/215 (49%), Gaps = 24/215 (11%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
VS +Y R V L+L I AG+ VA+VG SG GKST++ LL P AG + L G
Sbjct: 18 VSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAG- 72
Query: 1108 EIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166
L R+ L+ Q+ L + N+ G G +A +QA + +
Sbjct: 73 ---TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-------- 121
Query: 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD 1226
G E LSGGQKQRVA+ARA++ P +LLLDE ALDA + +QD ++
Sbjct: 122 ----GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177
Query: 1227 RVMKNR--TTVVVAHRLS-TIKNADMIAVVKNGVI 1258
+ + T ++V H +S + AD + +++ G I
Sbjct: 178 SLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 3e-19
Identities = 62/202 (30%), Positives = 107/202 (52%), Gaps = 6/202 (2%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G++++ ++ KY V +DL+ + G+ V L+G +GSGKST++S L R + G
Sbjct: 1216 GQMDVQGLTAKYTEAGR-AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-G 1273
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI-AYGKGGDATEAEIQAASEMA 1159
I +DGV + L+ R+ G++ Q+ +F+ T R N+ Y + D EI +E
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDE---EIWKVAEEV 1330
Query: 1160 NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
I D ++ + G LS G KQ + +AR+I+ KILLLDE ++ LD + +
Sbjct: 1331 GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390
Query: 1220 VVQDALDRVMKNRTTVVVAHRL 1241
+++ L + N T ++ HR+
Sbjct: 1391 IIRKTLKQSFSNCTVILSEHRV 1412
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 31/244 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE + + Y + ++N +A++G +G+GKST+ P +G +
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK---GGDATEAEIQAASE 1157
+ G I K ++ +R+ +GLV Q P +F+ T+ +IA+G G D E
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD----------E 111
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQ------LSGGQKQRVAIARAIVKDPKILLLDEATS 1211
AH+ +L M+G L+ LSGG+K+RVAIA I +P++L+LDE T+
Sbjct: 112 ETVAHRVSSALH-----MLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166
Query: 1212 ALDAESERVVQDALDRVMKN--RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268
LD + + + D L+ + + T + H+L + AD I V+ G IV G E +
Sbjct: 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226
Query: 1269 NIPD 1272
PD
Sbjct: 227 LQPD 230
|
Length = 277 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 3e-19
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 51/245 (20%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKS-TVVSLLQRFYDPDA----GHITLDGVEIQKLQ 1113
V D++L+I AG+T+ALVGESGSGKS T +S+L+ P G I G +
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 1114 LKWLRQ----QMGLVSQEP-VLFN--DTIRANIA------YGKGGDATEAEI-------- 1152
+ LR ++ ++ QEP V N T+ + G +A EI
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVG 142
Query: 1153 --QAASEMAN-AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
QAA + + H QLSGG++QRV IA A++ P++L+ DE
Sbjct: 143 IRQAAKRLTDYPH-------------------QLSGGERQRVMIAMALLTRPELLIADEP 183
Query: 1210 TSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHEN 1266
T+ALD + + L + + N + + H LS ++ AD +AV++NG VE+ +
Sbjct: 184 TTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243
Query: 1267 LINIP 1271
L + P
Sbjct: 244 LFSAP 248
|
Length = 529 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-19
Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 41/229 (17%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S ++ G T A++G++GSGKST+ ++ +P +GE+LI+ L + K+I ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMI 92
Query: 466 SQE------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL--VG 517
Q+ P L G I D +R+ T+L + Q +TL VG
Sbjct: 93 FQDPNTSLNPRLRIGQILD-----------FPLRLNTDLEPEQ----RRKQIFETLRMVG 137
Query: 518 ---EHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+H L+ GQKQR+A+ARA++ P+I++ DEA ++LD ++ L +M+
Sbjct: 138 LLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS----MRSQLINLML 193
Query: 571 NR------TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + V + +++ +D + V+H G++VE+G+ + ++ P
Sbjct: 194 ELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL 242
|
Length = 267 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 31/237 (13%)
Query: 384 IELRDVYFSYPARPNEQ---IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
I+ ++V + Y + ++ + G ++G++GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 441 GEVLIDGINLKEFQLQW-IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVA 495
G+V +DG++ + + W IR K G+V Q P + +++++A+G ++ EEIR
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 496 TELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ + ++ P LSGGQKQR+AIA + P ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 552 ALDAESEKVVQEALDRIM-VNR----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
LD + E ++ I +N+ T +++ H + AD I V+ GK+V +GT
Sbjct: 174 MLDPSGRR---EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 38/247 (15%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---LIDGINLKEFQ 454
+ S + G +VG+SGSGKST++ + P G + G L+ +Q
Sbjct: 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQ 74
Query: 455 L------QWIRKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEIRVA 495
L + +R + G V Q P + S NI YG AT ++
Sbjct: 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE 134
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ ID LP SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 135 VEIDPTR--IDDLP-----------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181
Query: 556 ESEKVVQEALDRIMVNR--TTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L ++ + +IV H L R A + V+ +G++VE G ++++DP+
Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQ 241
Query: 613 GAYSQLI 619
Y+QL+
Sbjct: 242 HPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 26/212 (12%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
++ S+ + G +G +G+GK+T + +I P +GE+ DG + ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 460 KKIGLVSQEPVLF---TG----SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
++IG + + P + T + + G +E+ L ++AK K
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARL-LGIRKKRIDEVLDVVGLKDSAK--KK----- 123
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
V S G KQR+ IA A+L +P +L+LDE T+ LD + K ++E + +
Sbjct: 124 ---VK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 573 TTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKG 602
TV+++ H LS ++ AD I +I++GK++E+G
Sbjct: 177 ITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 4e-19
Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 13/224 (5%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+EL + YPS V+V + ++L I AG+ VA+VG SGSGKST++++L P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1102 ITLDGVEIQKL---QLKWLRQQ-MGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAAS 1156
+ G ++ L L LR++ G + Q L + T N+ A A ++
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV----PAVYAGLERKQ 120
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+ A + + L G + V + QLSGGQ+QRV+IARA++ +++L DE T ALD+
Sbjct: 121 RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSH 178
Query: 1217 SERVVQDALDRVM-KNRTTVVVAHRLSTIKNADMIAVVKNGVIV 1259
S V L ++ + T ++V H A+ + +++G IV
Sbjct: 179 SGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 6e-19
Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 35/280 (12%)
Query: 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE--------IELHH 1047
I + + +S + KAKS + + R ++ P +E + +E +
Sbjct: 267 IRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFEN 326
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
VS Y + +DL+ +I G +A+VG +G+GKST++ LL P +G + +
Sbjct: 327 VSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-- 382
Query: 1108 EIQKLQLKWLRQ-QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166
+ +++ + Q + L + VL + + D E E++A F
Sbjct: 383 --ETVKIGYFDQHRDELDPDKTVL--EELSEG-----FPDGDEQEVRAYLGRFG---FTG 430
Query: 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD 1226
Q+ VG LSGG+K R+ +A+ +++ P +LLLDE T+ LD ES +++AL
Sbjct: 431 EDQE---KPVGV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL 483
Query: 1227 RVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHE 1265
T ++V+H + A I +V++ V +G +E
Sbjct: 484 DF--EGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYE 521
|
Length = 530 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 6e-19
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 56/250 (22%)
Query: 1043 IELHHVSFKYPS-------------------RPDVQVFRDLNLKIRAGKTVALVGESGSG 1083
IEL +VS YP+ + +D++ ++ G+ + L+G +G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 1084 KSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL-VSQEPVLFNDTIRANIAY- 1141
KST++ LL Y PD+G +T+ G ++ L +GL P L T R NI
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRG------RVSSL---LGLGGGFNPEL---TGRENIYLN 108
Query: 1142 -------GKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194
K D EI SE L D V S G K R+A A
Sbjct: 109 GRLLGLSRKEIDEKIDEIIEFSE----------LGDFIDLPVKT----YSSGMKARLAFA 154
Query: 1195 RAIVKDPKILLLDEATSALDAESERVVQDAL-DRVMKNRTTVVVAHRLSTIKN-ADMIAV 1252
A +P ILL+DE + DA + Q L + + + +T ++V+H S+IK D V
Sbjct: 155 IATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALV 214
Query: 1253 VKNGVIVEKG 1262
++ G I G
Sbjct: 215 LEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 6e-19
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 24/227 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIRKKI 462
S + G T +LVG+SGSGKST + R + Q GE++ +G L +LQ +R+ I
Sbjct: 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI 403
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN--AAKFIDKLPQGIDTLVGEHG 520
+ Q+P S+ G D+ E +RV L AA + L + + L+ EH
Sbjct: 404 QFIFQDPY---ASLDPRQTVG--DSIMEPLRVHGLLPGKAAAARVAWLLERVG-LLPEHA 457
Query: 521 ----TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRIMVNRTTV 575
+ SGGQ+QRI IARA+ +P++++ DEA SALD +++ LD + R
Sbjct: 458 WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD---LQRDFG 514
Query: 576 I----VAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
I ++H ++ V R + +AV++ G+IVE G + E+P+ Y++
Sbjct: 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 7e-19
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 30/184 (16%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-------TLDGVEIQKL 1112
V R+++L + AG+ V L G SGSGKST++ L Y PD G I +D V +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1113 QLKWLRQQ-MGLVSQ----EPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICS 1167
++ +R+ +G VSQ P + + A +G A +AA + +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLN----- 140
Query: 1168 LQQGYDTMVGERGLQL-----SGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
+ ER L SGG++QRV IAR + D ILLLDE T++LDA + VV
Sbjct: 141 --------LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVV 192
Query: 1223 DALD 1226
+ +
Sbjct: 193 ELIR 196
|
Length = 235 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 8e-19
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 16/208 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S S+ G L+G +G+GK+T I +I P +GEVL DG K + R
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG---KPLDIA-AR 69
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLV 516
+IG + +E L+ + D + Y EE R +++++L +
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYA 122
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
+ +LS G +Q++ A++ DP +L+LDE S LD + +++++ + + TVI
Sbjct: 123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVI 182
Query: 577 -VAHRLSTV-RNADMIAVIHRGKIVEKG 602
H++ V D + ++++G+ V G
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 8e-19
Identities = 56/222 (25%), Positives = 113/222 (50%), Gaps = 17/222 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWI 458
++ + S+ ++SG L+G +G+GK+T +I P +G++L+D ++ + + +
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTL 515
R IG + QE +F +++DNI A E + A + +D L + I L
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNI-----MAVLEIREKDLKKAERKEELDALLEEFHITHL 132
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALDRIMVN 571
LSGG+++R+ IARA+ +P+ +LLDE + +D + +++++ DR
Sbjct: 133 RDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR---G 189
Query: 572 RTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+I H + T+ D +I GK++ +G+ ++V + +
Sbjct: 190 IGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
|
Length = 243 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 9e-19
Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF 453
+ + S+ + +L+G +GSGK+T + + R D +G+VL+ G ++ +
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 454 Q-LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
+ + R+++G++ Q P F SI DN+ G + +A A L +
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV 153
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+ + +LSGGQ+Q + +AR + +P +LLLDE TSALD + + ++E + +
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213
Query: 573 TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
T +IV H L+ R +D A+ G++VE+G +L P+ A
Sbjct: 214 TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHA 256
|
Length = 276 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-18
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 23/230 (10%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QK 1111
V + ++LKI AL+G SG GKST++ R + +A G + L G I
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 1112 LQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-------KGGDATEAEIQAASEMANAHK 1163
+ +R+++G+V Q P F + TI N+A G K + ++ A + A
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKA---- 133
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
+L + + LSGGQ+QR+ IARA+ PKILL+DE T+ +D +++
Sbjct: 134 ---ALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 1224 ALDRVMKNRTTVVVAHR-LSTIKNADMIAVVKNGVIVEKGKHENLINIPD 1272
L + K T V+V H + +D +A + G ++E G + P+
Sbjct: 191 LLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240
|
Length = 253 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 11/224 (4%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
+ +++NL I + A++G SG GKST + L R + G I I
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG-KGGDATEAEIQAASEMANAHKFICSL 1168
+ ++ LR +G+V Q+P F +I N+ YG K + + E+ ++
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKT--LDEIVEKSLRGAAI 153
Query: 1169 QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV 1228
+ + LSGGQ+QR+ IAR + +P ++L+DE TSALD S V++ + +
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213
Query: 1229 MKNRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP 1271
K+ + ++V H + + +D A NG + E + + + P
Sbjct: 214 KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257
|
Length = 271 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 57/186 (30%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ +Y Y +P ++++ SG ++G SG GK+T+++LI F Q G +
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQ-EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+DG ++ + G+V Q E +L +++DN+A+G A E+ L A
Sbjct: 59 TLDGKPVEGPGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAGVEK---MQRLEIAH 110
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + K+ G++ + QLSGGQ+QR+ IARA+ +P++LLLDE ALDA + + +Q
Sbjct: 111 QMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
Query: 563 EALDRI 568
L ++
Sbjct: 169 TLLLKL 174
|
Length = 255 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 33/219 (15%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
F +++ G A++G SG+GKST+++LI F P +G + ++G + R+ + +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75
Query: 465 VSQEPVLFTG-SIKDNIAYGKD---------DATTEEI--RVATELANAAKFIDKLPQGI 512
+ QE LF+ ++ NI G + I ++ E + +LP
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-----DLLARLP--- 127
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
QLSGGQ+QR+A+AR ++++ ILLLDE SALD + + + ++ R
Sbjct: 128 --------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER 179
Query: 573 --TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
T ++V+H L R A V+ G+I G +L+
Sbjct: 180 QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 29/187 (15%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+ +++ Y R +V D++L++ +G+ V L+G +G+GK+T ++ PD+
Sbjct: 2 MSTLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGL--VSQEPVLFND-TIRANIAYGKGGDATEAEIQAAS 1156
G I LD +I KL + R ++G+ + QE +F T+ NI A
Sbjct: 59 GKILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIM-------------AVL 104
Query: 1157 EMANAHKFICSLQQGYDTMVGE---------RGLQLSGGQKQRVAIARAIVKDPKILLLD 1207
E+ ++ D ++ E + LSGG+++RV IARA+ +PK +LLD
Sbjct: 105 EIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164
Query: 1208 EATSALD 1214
E + +D
Sbjct: 165 EPFAGVD 171
|
Length = 243 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 2e-18
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 9/223 (4%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI-- 1109
+ + + +N I + A++G SG GKST + + R D P G + DG +I
Sbjct: 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ 1169
+ LR+++G+V Q+P F +I NIAYG + + E+ +L
Sbjct: 111 KFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGIN-DKKQLEEIVEKSLRKAALW 169
Query: 1170 QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
+ + L LSGGQ+QR+ +AR + +P+ILLLDE TSALD ++ ++D + +
Sbjct: 170 DEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR 229
Query: 1230 KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
+ T ++V H + +D GV+VE L P
Sbjct: 230 GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272
|
Length = 286 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 76/246 (30%), Positives = 120/246 (48%), Gaps = 40/246 (16%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLK 1115
V ++++ +R G+T+ LVGESGSGKST L R G I DG + L QL
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1116 WLRQQMGLVSQEPVLFNDTI--RAN----IAYG-----KGGDATEAEIQAASEMANAHKF 1164
+R ++ +V Q+P N ++ R N I G A + E Q + M
Sbjct: 359 PVRHRIQVVFQDP---NSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME----- 410
Query: 1165 ICSLQQGYDTMVGER-GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
+ G D R + SGGQ+QR+AIARA++ P +++LDE TS+LD + VQ
Sbjct: 411 ----EVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQA 462
Query: 1224 ---ALDRVMKNR---TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276
AL + ++ + + ++H L ++ + V++ G +VE+G E + P Y
Sbjct: 463 QILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYT 522
Query: 1277 -SLIAL 1281
L+AL
Sbjct: 523 RQLLAL 528
|
Length = 529 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 33/222 (14%)
Query: 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
L V Y R + + + I +G A+VG+SG GKST++ L+ P AGE+L
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 446 DGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG-----KDDATTEEIRVATELA 499
L E R+ L+ Q+ L + DN+ G +D A + A LA
Sbjct: 72 GTAPLAE-----AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA--LQALAAVGLA 124
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ A E LSGGQKQR+A+ARA++ P +LLLDE ALDA +
Sbjct: 125 DRA--------------NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
Query: 560 VVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKI 598
+Q+ ++ + T ++V H +S V AD + +I GKI
Sbjct: 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 63/249 (25%), Positives = 125/249 (50%), Gaps = 32/249 (12%)
Query: 1042 EIELHHVSFKYPS----RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
E+ +F+Y + R V+ + ++ +R G+T+A++GE+GSGKST+ +L +P
Sbjct: 6 EVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLFNDTIRANIAYGKGGDATEAEIQAAS 1156
+G I ++ + + +++ ++ Q+P N R I G + ++ +
Sbjct: 66 TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP--RLRI-----GQILDFPLRLNT 118
Query: 1157 EMANAHKFICSLQQGYDTMVGERGL----------QLSGGQKQRVAIARAIVKDPKILLL 1206
++ + +Q ++T+ GL L+ GQKQRVA+ARA++ PKI++
Sbjct: 119 DLEPEQR----RKQIFETL-RMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIA 173
Query: 1207 DEATSALDAESERVVQDALDRVMKNR---TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
DEA ++LD S R L ++ + + + V + IK+ +D + V+ G +VE+G
Sbjct: 174 DEALASLDM-SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232
Query: 1263 KHENLINIP 1271
+++ P
Sbjct: 233 STADVLASP 241
|
Length = 267 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 23/230 (10%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
D V ++L +R G V LVG +G+GK+T++ + P AG + + G +++ L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1114 LKWLRQQMGLVSQEPVL-FNDTIRANIAYGK---------GGDATEAEIQAASEMANAHK 1163
+ +++ V Q+ L F +R + G+ + A ++ A E +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE-RVVQ 1222
F + + LSGG++QRV +ARA+ + +LLLDE T++LD + R ++
Sbjct: 132 FA---DRPVTS--------LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180
Query: 1223 DALDRVMKNRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIP 1271
V +T V H L + D + ++ +G + G +++
Sbjct: 181 LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 55/262 (20%)
Query: 1042 EIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+I++ ++ + + +++ +++++I G+ +A++G++GSGK+T + L PD
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1100 GHI------------------TLDGVEIQKL------QLKWLRQQMGLVSQ--EPVLFND 1133
G I L+ + IQK ++K +R+++G+V Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1134 TIRANIAYGK---GGDATEAEIQAASEMANAHKFICSLQQGYDTMVG--ERGLQ-----L 1183
TI +I +G G EA+ +AA K+I +VG E LQ L
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAA-------KYI--------ELVGLDESYLQRSPFEL 166
Query: 1184 SGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN-RTTVVVAHRL- 1241
SGGQK+RVA+A + +P L+ DE T+ LD + + + + D + K +T ++V H L
Sbjct: 167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226
Query: 1242 STIKNADMIAVVKNGVIVEKGK 1263
+ ++ K+G I++ G
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDGD 248
|
Length = 305 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (215), Expect = 2e-18
Identities = 68/246 (27%), Positives = 127/246 (51%), Gaps = 32/246 (13%)
Query: 384 IELRDVYFSYPARPNEQIFS----GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
I+ V ++Y +PN S + + G+ AL+G +GSGKST++ + P
Sbjct: 2 IKFEKVNYTY--QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 440 AGEVLIDGINL----KEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD---ATTE 490
G+V + I + K+ +++ +RKK+G+V Q P LF ++ ++A+G + +
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 491 EIRVATE----LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
++A E + A +F +K P +LSGGQ +R+AIA + +P +L+L
Sbjct: 120 AEKIAAEKLEMVGLADEFWEKSP-----------FELSGGQMRRVAIAGILAMEPEVLVL 168
Query: 547 DEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604
DE T+ LD ++ + + + I +T V+V H + V + AD + ++ +G I+ GT
Sbjct: 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
Query: 605 SKLVED 610
S + ++
Sbjct: 229 SDVFQE 234
|
Length = 288 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-18
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 25/211 (11%)
Query: 1034 TILEDVKGEIELHHVSFKYPSRPDVQVF-RDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092
++ I L ++S PD Q +LN ++R G+ + + GESG+GK++++ L
Sbjct: 384 DFDDNADHGITLENLSL---RTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALA 440
Query: 1093 RFYDPDAGHITLDGVEIQKLQLKWLRQQMGL--VSQEPVLFNDTIRANIAYGKG-GDATE 1149
+ +G I++ L + Q P L T+R + Y D ++
Sbjct: 441 GLWPWGSGRISM-------------PADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD 487
Query: 1150 AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
AE+ A L + LSGG++QR+A AR ++ PK + LDEA
Sbjct: 488 AELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542
Query: 1210 TSALDAESERVVQDALDRVMKNRTTVVVAHR 1240
TSALD E+E + L + + T + V HR
Sbjct: 543 TSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 23/232 (9%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQAG 441
E++D++ ++I G ++++ G A++G +GSGKST I + Y+ G
Sbjct: 5 EIKDLHVE--VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEG 61
Query: 442 EVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFTG-SIKD------NIAYGKDDATTEEIR 493
E+L DG ++ E + R I L Q PV G + D N G E I+
Sbjct: 62 EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIK 121
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
E A ++ ++ V E SGG+K+R I + +L +P++ +LDE S L
Sbjct: 122 ELKEKAELLGLDEEF---LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175
Query: 554 DAESEKVVQEALDRIM-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
D ++ K+V E ++ + R +I+ H RL D + V++ G+IV+ G
Sbjct: 176 DIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-18
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQW 457
I G + + G T A+VG SGSGKST+++++ DP +GEV + G L E
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 458 IR-KKIGLVSQEPVLF-TGSIKDNIAYG---KDDATTEEIRVATELANAAKFIDKLPQGI 512
+R + +G V Q L + +N+A + +++ + A L A G+
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAV--------GL 136
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+ + QLSGG++QR+A+ARA P +L DE T LD + + + L +NR
Sbjct: 137 GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL--FALNR 194
Query: 573 ----TTVIVAHRLSTVRNADMIAVIHRGKIVE 600
T V+V H D + G++VE
Sbjct: 195 ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 3e-18
Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 14/222 (6%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QKLQL 1114
+D+++ A++G SG GKSTV+ + R +D P A G I LD +I + +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 1115 KWLRQQMGLVSQEPVLFND-TIRANI--AYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
+R+++G+V Q+P F +I N+ Y G +E A E+ + +L
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSE---ADEIVESSLKRVALWDE 137
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN 1231
+ ++LSGGQ+QR+ IAR I P+++L+DE SALD S +++ ++ + +
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 1232 RTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIPD 1272
T ++V H + + +D A G +VE G+ + + P+
Sbjct: 198 YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 57/210 (27%), Positives = 107/210 (50%), Gaps = 10/210 (4%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
+ L+L+I G V ++G +G+GKST+++ + P +G I +DGV++ K R
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS-VAKR 78
Query: 1119 QQM-GLVSQEPVL---FNDTIRAN--IAYGKGGDATEAEIQAASEMANAHKFICSLQQGY 1172
+ V Q+P+ TI N +A +G + ++ + + L G
Sbjct: 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGL 138
Query: 1173 DTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR 1232
+ + +R LSGGQ+Q +++ A + PKILLLDE T+ALD ++ V + ++++
Sbjct: 139 ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH 198
Query: 1233 --TTVVVAHRL-STIKNADMIAVVKNGVIV 1259
TT++V H + + + + ++ +G IV
Sbjct: 199 KLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 3e-18
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 23/235 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L V SY + + +G S +++SG L+G +G+GKST+ +I P AG++
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDN-IAYGKD-DATTEEIR-VATE 497
+ G+ + + + R +IG+V Q L FT +++N + +G+ +T EI V
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFT--VRENLLVFGRYFGMSTREIEAVIPS 155
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A+ K D V + LSGG K+R+ +ARA++ DP++L+LDE T+ LD +
Sbjct: 156 LLEFARLESK----ADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207
Query: 558 EKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRG-KIVEKGTHSKLVE 609
++ E L ++ +T ++ H + R D + V+ G KI E H+ + E
Sbjct: 208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
|
Length = 340 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 3e-18
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 29/239 (12%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQL--- 1114
RD++ + G+ + +VGESGSGKST++ L PD G T G E++ QL
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 1115 ---KWLRQQMGLVSQEPVLFNDTIRANIAYGKG--------GDATEAEIQAASEMANAHK 1163
+ +R + G V Q P D +R ++ G G I+A A
Sbjct: 79 ERRRLMRTEWGFVHQNPR---DGLRMRVSAGANIGERLMAIGARHYGNIRAT-----AQD 130
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
++ ++ + + SGG +QR+ IAR +V P+++ +DE T LD + + D
Sbjct: 131 WLEEVEIDPTR-IDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 1224 ALDRVMKNR--TTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
L ++++ ++V H L + A + V++ G +VE G + +++ P Y L+
Sbjct: 190 LLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-18
Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +V+ ++ V D++ + G+ L+G +G+GK+T + ++ PD+G +
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAA--- 1155
DG + R ++G + +E L+ + + Y KG EA +
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWL 113
Query: 1156 -----SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
SE AN +R +LS G +Q+V A++ DP++L+LDE
Sbjct: 114 ERLELSEYAN-----------------KRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156
Query: 1211 SALDAESERVVQDALDRVMKNRTTVV-VAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
S LD + +++D + + + TV+ H++ ++ D + ++ G V G
Sbjct: 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-18
Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 33/233 (14%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
+ + S+++ + L+G +G+GKST++ +I P +GE++ DG W
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPW 64
Query: 458 IRK---KIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKL 508
RK KIG + + P L+ + ++N+ G D+ +E+ +L N K
Sbjct: 65 TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN----TGKK 120
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
Q S G KQR+ IA A+L P++L+LDE T+ LD + ++E +
Sbjct: 121 KAK----------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF 170
Query: 569 MVNRTTVIV-AHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
TVI+ +H LS V+ AD I +I G + +G +K E+ E + +++
Sbjct: 171 PEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK-SENLEKLFVEVV 222
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (211), Expect = 4e-18
Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 25/247 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+++++SF Y ++ ++ ++++I K A++G SG GKST + L R + + +
Sbjct: 8 IKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63
Query: 1103 TLDG-VEI-------QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG--GDATEAEI 1152
++G VE +++ L LR+Q+ +V +P LF ++ N+AYG G + EI
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
E A L + + L LSGGQ+QR+ IARA+ PK+LL+DE
Sbjct: 124 DDIVESALKD---ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180
Query: 1213 LDAESERVVQDALD--RVMKNRTTVVVAHRLSTIKN-ADMIAVVKN-----GVIVEKGKH 1264
LD + V+ + R+ T V+V+H L + +D A K G +VE G
Sbjct: 181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLT 240
Query: 1265 ENLINIP 1271
+ + N P
Sbjct: 241 KKIFNSP 247
|
Length = 261 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 4e-18
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI- 458
Q G S+ + G AL+G++G+GK+T++ I P++G ++ DG ++
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE-IRVATELANAAKFIDKLPQGIDTLV- 516
R I V + +F T EE + + + ++ + + L
Sbjct: 77 RLGIAYVPEGRRIFP------------RLTVEENLLLGAYARRDKEAQERDLEEVYELFP 124
Query: 517 ------GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-M 569
+ LSGG++Q +AIARA++ P++LLLDE + L + K+V+E + I
Sbjct: 125 RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKE 181
Query: 570 VNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + T ++V AD V+ G+IV GT ++L+ DP+
Sbjct: 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
|
Length = 237 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 5e-18
Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 17/228 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y + +N+ I+ G+ A++G +G+GKST+ L P +G I
Sbjct: 6 LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1103 TLDG--VEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DATEAEIQAASE 1157
DG ++ + L LR+ +G+V Q+P LF+ ++ ++++G E E++ +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
A I L+ + LS GQK+RVAIA +V +PK+L+LDE T+ LD
Sbjct: 124 NALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1218 ERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKG 1262
+ L + K T ++ H + + D + V+K G ++ +G
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 27/228 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-Q 456
++ +G S+S+ G L+G +G+GK+T +I P +G++L+DG ++ + + +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 457 WIRKKIGLVSQEPVLFTG-SIKDNIA-----YGKDDATTEEIRVATELANAAKFIDKLPQ 510
R IG + QE +F ++++NI G EE +++
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE--------LLEEF-- 121
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALD 566
I L + LSGG+++R+ IARA+ +P+ LLLDE + +D + +K+++ D
Sbjct: 122 HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181
Query: 567 R-IMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
R I V +I H + T+ D +I+ GK++ +GT ++ +
Sbjct: 182 RGIGV----LITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 5e-18
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF 453
P + + + +I+ G L+G SG GKST++S + Q GE+ ++ L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD-- 70
Query: 454 QLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
L +++IG++ Q+ +LF S+ N+ + R ANAA +++ G+
Sbjct: 71 MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNAR--RNAANAA--LERS--GL 124
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
D + LSGGQ+ R+A+ RA+L P+ LLLDE S LD
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 5e-18
Identities = 76/246 (30%), Positives = 111/246 (45%), Gaps = 46/246 (18%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--------LIDGINLKEF 453
S + G +VG+SGSGK+T+++ + P AGEV L D L E
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 454 QLQWI-RKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEIRVATELA 499
+ + + R + G V Q P + S NI YG AT + E+
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
A ID LP T SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 142 --AARIDDLP-----------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS--- 185
Query: 560 VVQ-EALD--RIMVNR---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
VQ LD R +V VIV H L+ R A + V+ +G++VE G ++++DP+
Sbjct: 186 -VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244
Query: 613 GAYSQL 618
Y+QL
Sbjct: 245 HPYTQL 250
|
Length = 258 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 6e-18
Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 49/198 (24%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------FQ- 454
G +++I G +L+G SG GKST+++LI P +G V+++G + E FQ
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQN 62
Query: 455 ---LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD----DATTEE----IRVATELANAAK 503
L W+ ++++NIA D D + E + L +
Sbjct: 63 YSLLPWL----------------TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE 106
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DK P QLSGG KQR+AIARA+ P++LLLDE ALDA + +QE
Sbjct: 107 AADKRP-----------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155
Query: 564 ALDRIMVNR--TTVIVAH 579
L +I T ++V H
Sbjct: 156 ELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 6e-18
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 25/215 (11%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
D+ I L ++ P + + S + + G + G+SG+GK++++ +
Sbjct: 385 FDDNADHGITLENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY--GKDDATTEEIR 493
+ +G + + + F + Q P L G++++ + Y D + E+
Sbjct: 443 WPWGSGRISMPADSALLF-----------LPQRPYLPQGTLREALCYPNAAPDFSDAELV 491
Query: 494 VATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++L + V LSGG++QR+A AR +L P+ + LDEATSA
Sbjct: 492 AVLHKVGLGDLAERLDEEDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDEATSA 545
Query: 553 LDAESEKVVQEALDRIMVNRTTVI-VAHRLSTVRN 586
LD E+E + + L + TVI V HR T+ N
Sbjct: 546 LDEETEDRLYQLLKE-ELPDATVISVGHR-PTLWN 578
|
Length = 604 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 6e-18
Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 28/257 (10%)
Query: 380 IRGDIELR--DVYFSYPARPNEQI--FSGFSISISSGTTAALVGQSGSGKSTVIS----- 430
+ DI LR ++Y + + ++ + S + ++G SGSGKST+++
Sbjct: 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQW-----------IRKKIGLVSQEP--VLFTGSIK 477
+ ++ Q G++ I + +R+++ +V Q P LF +I+
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
+I +G ++ A +LA +++K+ D+ + LSGGQK+R+AIA +
Sbjct: 136 KDIMFGPVALGVKKSE-AKKLA--KFYLNKMGLD-DSYLERSPFGLSGGQKRRVAIAGIL 191
Query: 538 LKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR 595
P IL+ DE T+ LD + E ++Q LD N+T ++ H + V AD + V+ +
Sbjct: 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
Query: 596 GKIVEKGTHSKLVEDPE 612
GKI++ GT ++ D
Sbjct: 252 GKILKTGTPYEIFTDQH 268
|
Length = 320 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (211), Expect = 7e-18
Identities = 66/234 (28%), Positives = 127/234 (54%), Gaps = 23/234 (9%)
Query: 1043 IELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I+ V++ Y P+ P + D++L+++ G AL+G +GSGKST++ L P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1101 HITLDGVEI----QKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK---GGDATEAE 1151
+T+ + + ++ ++K +R+++G+V Q P LF +T+ ++A+G G +AE
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1152 IQAASEMANAHKFICSLQQGYDTMVGERG-LQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
AA ++ G E+ +LSGGQ +RVAIA + +P++L+LDE T
Sbjct: 122 KIAAEKLEMV---------GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
Query: 1211 SALDAESERVVQDALDRVMKN-RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
+ LD ++ + + + ++ +T V+V H + + + AD + +++ G I+ G
Sbjct: 173 AGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 8e-18
Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 15/231 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L VS Y D V DL+ I G+ L+G +G+GKST+ +L PD G I
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI-AYGKGGDATEAEIQAASEMAN 1160
T+ G + + + R +G+V Q L + T+R N+ +G+ + EI+A + +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV--IPS 118
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
+F L+ D V LSGG K+R+ +ARA++ DP++L+LDE T+ LD + +
Sbjct: 119 LLEF-ARLESKADVRVA----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173
Query: 1221 VQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
+ + L ++ + +T ++ H + + D + V+++G + +G+ LI+
Sbjct: 174 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 36/239 (15%)
Query: 1043 IELHHVSFKYPSRPDVQ---VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
I+ +VS+KY S + D+NL+++ G+ + ++G +GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1100 GHITLDGVEIQKLQLKW-LRQQMGLVSQEPVLFNDTIRANI-----AYGKGGDATEA-EI 1152
G + +DG++ + W +R + G+V Q P ++ I A I A+G EI
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNP---DNQIVATIVEEDVAFGPENLGIPPEEI 121
Query: 1153 QAASE-------MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILL 1205
+ + M + L LSGGQKQRVAIA + P+ ++
Sbjct: 122 RERVDESLKKVGMYEYRRHAPHL--------------LSGGQKQRVAIAGILAMRPECII 167
Query: 1206 LDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262
DE T+ LD R V + + + K T +++ H + AD I V+ +G +V +G
Sbjct: 168 FDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 23/232 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ +S +Y V+V + ++ + AG+ AL+G +G+GKST++ ++ PD+G +
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1103 TLDGVEIQKLQLKWLRQQMG--LVSQEPVLF-NDTIRANIAYG--KGGDATEAEIQAASE 1157
+ G +L Q+G LV QEP+LF N +++ NI +G K + + Q +
Sbjct: 69 EIGGNPCARLT-PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAA 127
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD-AE 1216
+ C L D+ G L +Q V I R +++D +IL+LDE T++L AE
Sbjct: 128 LG------CQLD--LDSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAE 175
Query: 1217 SERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267
+ER+ + + + V ++H+L I+ AD I+V+++G I GK +L
Sbjct: 176 TERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-17
Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 19/188 (10%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN---LKEFQLQ 456
Q G + + G A L G SG+GKST++ LI P AG++ G + LK ++
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 457 WIRKKIGLVSQEP-VLFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGID 513
++R++IG++ Q+ +L ++ DN+A A+ ++IR A +DK+ G+
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAA-----LDKV--GLL 128
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD-AESEKVVQ--EALDRIMV 570
QLSGG++QR+ IARA++ P +LL DE T LD A SE +++ E +R+ V
Sbjct: 129 DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV 188
Query: 571 NRTTVIVA 578
TV++A
Sbjct: 189 ---TVLMA 193
|
Length = 222 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 23/190 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I HVS Y Q + + +R G+ L G SG+GKST++ L+ P AG I
Sbjct: 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQ 1153
G +I +L ++ +LR+Q+G++ Q+ L D T+ N+A G GD +
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
AA + + G +QLSGG++QRV IARA+V P +LL DE T L
Sbjct: 120 AALD-----------KVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168
Query: 1214 D-AESERVVQ 1222
D A SE +++
Sbjct: 169 DDALSEGILR 178
|
Length = 222 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 35/238 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
L ++ + +D++ +I G+ V ++G +G+GKST++ L+ Y P +G +
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 1103 TLDGVEIQKLQLKWLRQ-----QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
+ G ++ L + L +E + I G + ++ E
Sbjct: 85 KVTG------KVAPLIELGAGFDPELTGRENIYLRGLI-----LGLTRKEIDEKVDEIIE 133
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
A FI D V S G R+A + A +P ILLLDE + DA
Sbjct: 134 FAELGDFI-------DQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA-- 180
Query: 1218 ERVVQDALDRVM----KNRTTVVVAHRLSTIKNA-DMIAVVKNGVIVEKGKHENLINI 1270
+ L+R+ KN+T V+V+H L IK D +++G I +G E +I
Sbjct: 181 -AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
|
Length = 249 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 28/217 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-LKEFQLQWIRKKI 462
G S + G L+G +G+GK+T I ++ P +G + G + ++E + +R++I
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE--PREVRRRI 75
Query: 463 GLVSQEPVL---FTGSIKDNIA-----YG-KDDATTEEIRVATELANAAKFIDKLPQGID 513
G+V Q+ + TG +N+ YG E I + + D+L
Sbjct: 76 GIVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL----- 128
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VN 571
V + SGG ++R+ IAR+++ P +L LDE T LD ++ V E ++++
Sbjct: 129 --VKTY----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182
Query: 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
T ++ H + D +A+I G+I+ +GT +L
Sbjct: 183 MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-17
Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 36/251 (14%)
Query: 1039 VKGEI-ELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
I + ++ + + ++ +++ K ++G SGSGKST+V+
Sbjct: 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76
Query: 1096 DPDAG-----------HITLDGVEIQKLQ-----LKWLRQQMGLVSQEP--VLFNDTIRA 1137
G + K LR+++ +V Q P LF DTI
Sbjct: 77 KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEK 136
Query: 1138 NIAYGK---GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERG-LQLSGGQKQRVAI 1193
+I +G G +EA+ A ++ + + ER LSGGQK+RVAI
Sbjct: 137 DIMFGPVALGVKKSEAKKLAK-------FYLNKMGLDDSYL--ERSPFGLSGGQKRRVAI 187
Query: 1194 ARAIVKDPKILLLDEATSALDAESER-VVQDALDRVMKNRTTVVVAHRLSTI-KNADMIA 1251
A + P+IL+ DE T+ LD + E ++Q LD N+T V+ H + + + AD +
Sbjct: 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247
Query: 1252 VVKNGVIVEKG 1262
V+ G I++ G
Sbjct: 248 VMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-17
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 17/192 (8%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLK 1115
V +++ I G+ +A+VG SGSGKST++ LL P +G + +G + KL + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1116 WLRQQMGLVSQEPVLFND-TIRANIAYGK--GGDATEAEIQAASEMANAHKFICSLQQGY 1172
Q++G + Q L D T N+A G A EM A G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAA--------VGL 135
Query: 1173 DTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR 1232
+ R +LSGG++QRVAIARA+V +P+++L DE T LDA + + L + + +
Sbjct: 136 EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQ 195
Query: 1233 TT--VVVAHRLS 1242
T +VV H L
Sbjct: 196 GTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 31/184 (16%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++S +Y R +V ++L ++ G+ V L+G +G+GK+T ++ PD+G I
Sbjct: 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGL--VSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMA 1159
LDG +I KL + R ++G+ + QE +F T+ NI A E+
Sbjct: 58 LLDGQDITKLPMH-KRARLGIGYLPQEASIFRKLTVEENIL-------------AVLEIR 103
Query: 1160 NAHKFICSLQQGYDTMVGE---------RGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
K ++ + ++ E + LSGG+++RV IARA+ +PK LLLDE
Sbjct: 104 GLSKKE--REEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161
Query: 1211 SALD 1214
+ +D
Sbjct: 162 AGVD 165
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 57/238 (23%), Positives = 120/238 (50%), Gaps = 32/238 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ KY D + R ++ ++R G+ L+G +G+GK+T + +L P +G
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIA-----YG-KGGDATE--AEIQ 1153
T+ G ++ + + + +R+++G+V Q+ + ++ T N+ YG G + E E+
Sbjct: 58 TVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELL 116
Query: 1154 AASEMAN-AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+ A + + + SGG ++R+ IAR++V P++L LDE T
Sbjct: 117 DFVGLLEAADRLVKTY---------------SGGMRRRLEIARSLVHRPEVLFLDEPTIG 161
Query: 1213 LDAESERVVQDALDRVMK--NRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENL 1267
LD ++ V + ++++ + T ++ H + + D +A++ +G I+ +G E L
Sbjct: 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 4e-17
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 14/225 (6%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKL--- 1112
Q ++L I G+ VAL+G SGSGKST++ L D HI L G +Q+
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 1113 --QLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDAT--EAEIQAASEMANAHKFICS 1167
++ R G + Q+ L N ++ N+ G G +
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDR 1227
+ G +R LSGGQ+QRVAIARA+++ K++L DE ++LD ES R+V D L
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 1228 VMKNR--TTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLIN 1269
+ +N T VV H++ ++ + I ++ G + G + N
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN 242
|
Length = 262 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 5e-17
Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+EL+D+ SYP+ + ++ G S+ I +G A+VG SGSGKST+++++ P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 443 VLIDGINLKEF---QLQWIRKK-IGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE 497
+ G ++ L +R++ G + Q L + + N+ A E
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER---KQR 121
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A + + +L G++ V +QLSGGQ+QR++IARA++ +++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 558 EKVVQEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKIV 599
+ V L ++ TVI V H A+ + I G+IV
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 5e-17
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 23/238 (9%)
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
F+ RP V LN+ + A +G +G+GK+T +S+L P +G + + G +I
Sbjct: 938 FEPSGRPAVD---RLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAASEMANAHK 1163
+ L +RQ +G+ Q +LF+ T+ +I + G+ + + E++A E H
Sbjct: 995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH 1053
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
E LSGG ++++++A A V D K+++LDE TS +D S R + D
Sbjct: 1054 -----------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102
Query: 1224 ALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN-IPDGFYASLI 1279
L + RT ++ H + D IA++ G + G L N GFY +L+
Sbjct: 1103 LLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLV 1160
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 7e-17
Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 23/233 (9%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116
DV + +D+NL I G+ V VG SG GKST++ ++ D +G + + + +
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA- 73
Query: 1117 LRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQ----AASEMANAHKFICSLQQ 1170
+ +G+V Q L+ + ++ N+++G K A + EI +E+ LQ
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV---------LQL 123
Query: 1171 GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK 1230
+ ++ + LSGGQ+QRVAI R +V +P + LLDE S LDA ++ + R+ K
Sbjct: 124 AH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 1231 --NRTTVVVAH-RLSTIKNADMIAVVKNGVIVEKGKHENLINIP-DGFYASLI 1279
RT + V H ++ + AD I V+ G + + GK L + P + F A I
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFI 234
|
Length = 369 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 7e-17
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 24/226 (10%)
Query: 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447
D++F Y +E + G ++ S LVG +G GKST+ + PQ G VL G
Sbjct: 6 DLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 448 --INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
++ + L +R+++ V Q+P +F I +IA+ + E + + A
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122
Query: 504 FIDKLPQGIDTLVGEHGTQ-----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+D +H LS GQK+R+AIA A++ R LLLDE T+ LD
Sbjct: 123 LVD----------AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 559 KVVQEALDRIMVN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ + RI+ +I +H + + +D + V+ +G+I+ G
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 44/230 (19%)
Query: 1059 QVFRDLNLKIRA-----GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG---VEI- 1109
Q DL L + G T A+ G SG+GK+++++ + P G I L+G +
Sbjct: 8 QQLGDLCLTVNLTLPAQGIT-AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE 66
Query: 1110 QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
+ + L ++++G V Q+ LF + +R N+ YG MA S+
Sbjct: 67 KGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG---------------MAK------SM 105
Query: 1169 QQGYDTMVGERGLQ---------LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
+D +V G++ LSGG+KQRVAI RA++ P++LL+DE ++LD +R
Sbjct: 106 VAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165
Query: 1220 VVQDALDRVMK--NRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHEN 1266
+ L+R+ + N + V+H L I + AD + V++ G + G E
Sbjct: 166 ELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 1e-16
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 43/243 (17%)
Query: 406 SISISSGTTAALVGQSGSGKS-TVISLIERFYDPQAGEVLIDG----------INLKEF- 453
S S+ G T A+VG+SGSGKS T ++L+ R + G V D I L E
Sbjct: 36 SFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIELSEQS 94
Query: 454 --QLQWIR-KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV------ATELANAAKF 504
Q++ +R + ++ QEP+ S+ G+ A E IR+ + A +
Sbjct: 95 AAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIA--ESIRLHQGASREEAMVEAKRM 149
Query: 505 ID--KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE---- 558
+D ++P+ T++ + QLSGG +QR+ IA A+ P +L+ DE T+ALD +
Sbjct: 150 LDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL 208
Query: 559 ---KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
KV+Q+ + + + H + V AD + V+++G+ VE G+ ++ P+
Sbjct: 209 QLIKVLQKEMS-----MGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHP 263
Query: 615 YSQ 617
Y++
Sbjct: 264 YTR 266
|
Length = 623 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 32/238 (13%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDA 1099
EI+ HV ++ + +NL ++ G+ A++G +GSGKST+ + Y+
Sbjct: 5 EIKDLHVE----VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTE 60
Query: 1100 GHITLDGVEIQKLQLKWLRQQMG--LVSQEP-----VLFNDTIRA--NIAYGKGGDATEA 1150
G I DG +I +L R + G L Q P V +D +RA N G G E
Sbjct: 61 GEILFDGEDILELSPDE-RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEF 119
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVGERGLQ--LSGGQKQRVAIARAIVKDPKILLLDE 1208
+ + G D ER + SGG+K+R I + ++ +PK+ +LDE
Sbjct: 120 IKELKEKAELL---------GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDE 170
Query: 1209 ATSALDAESERVVQDALDRVM-KNRTTVVVAHR---LSTIKNADMIAVVKNGVIVEKG 1262
S LD ++ ++V + ++ + + R +++ H L IK D + V+ +G IV+ G
Sbjct: 171 PDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 72/248 (29%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---LIDGINLKEFQL--- 455
S + G +VG+SGSGK+T++ I P AG V + DG + +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 456 ---QWIRKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEI--RVATE 497
+ +R + G V Q P + S NI YG A ++ V +
Sbjct: 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID 141
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L ID LP SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 142 LDR----IDDLP-----------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS- 185
Query: 558 EKVVQEALD--RIMVNR---TTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611
V LD R +V VIV H L+ R AD + V+ +G++VE G ++++DP
Sbjct: 186 --VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDP 243
Query: 612 EGAYSQLI 619
Y+QL+
Sbjct: 244 HHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-16
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D K +EL +V F Y + +NL I+ G+ V L+G +GSGKST+ LL Y P
Sbjct: 319 DWKT-LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
+G I LDG + QL+ R+ V + LF+ + G G A+ I+ +
Sbjct: 376 QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQ 429
Query: 1158 -MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+ AHK SL G + L+LS GQK+R+A+ A++++ IL+LDE + D
Sbjct: 430 RLELAHKT--SLNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPA 482
Query: 1217 SERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVE 1260
R L ++K +T ++H +AD + ++NG + E
Sbjct: 483 FRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 28/240 (11%)
Query: 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
LR+V F P R + S++ +G L+G +GSGKST++ ++ R P GE+L+
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 446 DGINLKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAYGK----------DDATTEEIRV 494
D L+ + + +K+ + Q+ P ++++ +A G+ A E++
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A L +L +D+L SGG++QR IA + +D R LLLDE TSALD
Sbjct: 131 AISLVGLKPLAHRL---VDSL--------SGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 555 AESEKVVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+ V + R+ R T + V H ++ R D + + G+++ +GT ++L+
Sbjct: 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-16
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWIR 459
S ++ G T LVG+SGSGKST + R + Q GE+ DG L QL +R
Sbjct: 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVR 361
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA----KFIDKLPQ-GID- 513
+I +V Q+P S+ N E +RV +AA + I + + G+D
Sbjct: 362 HRIQVVFQDP---NSSL--NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE---ALDRIMV 570
+ + SGGQ+QRIAIARA++ P +++LDE TS+LD K VQ AL + +
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLKSLQ 472
Query: 571 NR---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS-QLIRL 621
+ + ++H L VR + V+ +G++VE+G ++ P+ Y+ QL+ L
Sbjct: 473 QKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLAL 528
|
Length = 529 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 35/242 (14%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
L +VSF+ P R + L+L AGK L+G +GSGKST++ +L R P G I L
Sbjct: 14 LRNVSFRVPGRTLLH---PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1105 DGVEIQKLQLK-WLRQQMGLVSQEPVLFNDTIRANI---------AYGKGGDATEAEIQA 1154
D ++ K + R+ L Q P T+R + A G+ G A +++
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 1155 ASEMAN----AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
A + AH+ + SL SGG++QR IA + +D + LLLDE T
Sbjct: 131 AISLVGLKPLAHRLVDSL---------------SGGERQRAWIAMLVAQDSRCLLLDEPT 175
Query: 1211 SALDAESERVVQDALDRVMKNR--TTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENL 1267
SALD + V + R+ + R T + V H ++ + D + ++ G ++ +G L
Sbjct: 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Query: 1268 IN 1269
+
Sbjct: 236 MR 237
|
Length = 265 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 44/213 (20%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQL 1114
++ + +NL I+ G+ AL+G +GSGKST+ + Y+ G I G +I L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 1115 KWLRQQMG--LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGY 1172
+ R ++G L Q P EI F+ + +G
Sbjct: 72 E-ERARLGIFLAFQYPP---------------------EIPGVKNA----DFLRYVNEG- 104
Query: 1173 DTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KN 1231
SGG+K+R I + ++ +P + +LDE S LD ++ R+V + ++++ +
Sbjct: 105 ----------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEG 154
Query: 1232 RTTVVVAH--RLSTIKNADMIAVVKNGVIVEKG 1262
++ +++ H RL D + V+ +G IV+ G
Sbjct: 155 KSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 28/223 (12%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQK 1111
++ D++L + +G+ +A++G SGSGK+T++ + + G I +G +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 1112 LQLK----WLRQQMGLVS----QEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163
Q + ++RQ L+ +E + + +R E ++A
Sbjct: 77 DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA---- 132
Query: 1164 FICSLQQGYDTMVGERGLQ-LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE-RVV 1221
T +G ++ +SGG+++RV+IA ++ DPK+L+LDE TS LD+ + +V
Sbjct: 133 ---------LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183
Query: 1222 QDALDRVMKNRTTVVVAH--RLSTIKNADMIAVVKNGVIVEKG 1262
+NR ++ H R + D I ++ +G IV G
Sbjct: 184 STLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 23/229 (10%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-KEFQLQW--IRK 460
G ++ + G T +VG+SG GKST I GEV G +L +W +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 461 KIGLVSQEPVLFTG---SIKDNIA-----YGKDDATTEEIRVATELANAAKFIDKLPQGI 512
I ++ Q+P+ +I + IA Y + +E++ + + LP
Sbjct: 99 DIQMIFQDPLASLNPRMTIGEIIAEPLRTY-HPKLSRQEVK--DRVKAMMLKVGLLPN-- 153
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE-KVVQ--EALDRIM 569
L+ + + SGGQ QRI IARA++ +P++++ DE SALD + +VV + L R M
Sbjct: 154 --LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 211
Query: 570 VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ + +AH L+ V++ +D + V++ G VE GT+ ++ +P Y++
Sbjct: 212 -GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
Length = 331 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 69/246 (28%), Positives = 120/246 (48%), Gaps = 33/246 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD---- 1098
IEL +++ ++P V ++L ++ G+ +ALVG SGSGKS +
Sbjct: 5 IELRNIAL-QAAQPLV---HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLFN--DTIRAN-----IAYGK-GGDATE 1149
AG + LDG + L+ +++ + Q P FN T+ + +A GK DAT
Sbjct: 61 AGRVLLDGKPVAPCALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATL 118
Query: 1150 AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
A + NA + + + Y ++SGG QR+ IA A++ + ++ DE
Sbjct: 119 TAALEAVGLENAARVL----KLY-------PFEMSGGMLQRMMIALALLCEAPFIIADEP 167
Query: 1210 TSALDAESERVVQDALDRVMKNRT--TVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHEN 1266
T+ LD ++ + D L+ +++ R ++V H + + + AD +AV+ +G IVE+G E
Sbjct: 168 TTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227
Query: 1267 LINIPD 1272
L N P
Sbjct: 228 LFNAPK 233
|
Length = 254 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-16
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
R +FSG S ++++G + G +GSGK+T++ ++ P AG VL++G L +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
R + L + T S+ +N+ + D + E++ A F D P
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVA--- 124
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
QLS GQ++R+A+AR +L + +LDE T+ALD EA+
Sbjct: 125 -------QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 3e-16
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 41/209 (19%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQW 457
+I G +++I G AL+G +GSGKST+ I Y+ GE+L G ++ + +
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 458 I-RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
R I L Q P G ++ A L V
Sbjct: 74 RARLGIFLAFQYPPEIPG-----------------VKNADFLRY---------------V 101
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTV 575
E SGG+K+R I + +L +P + +LDE S LD ++ ++V E ++++ ++ +
Sbjct: 102 NE---GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 576 IVAH--RLSTVRNADMIAVIHRGKIVEKG 602
I+ H RL D + V++ G+IV+ G
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-16
Identities = 70/238 (29%), Positives = 107/238 (44%), Gaps = 33/238 (13%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKST---------VVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
+ +L I G+ L+G SGSGKST VS G + D
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSV--DVANCDAAT 99
Query: 1114 LKWLRQ-QMGLVSQEPVLFN-DTIRANIAYGKGGDATEAEIQAASE-----MANAHKFIC 1166
L+ LR ++ +V Q+ L T+ N+A+G E+Q + + +
Sbjct: 100 LRRLRTHRVSMVFQQFALLPWRTVEENVAFG-------LEMQGMPKAERRKRVDEQLELV 152
Query: 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD 1226
L Q D GE LSGG +QRV +ARA + ILL+DE SALD +QD L
Sbjct: 153 GLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL 208
Query: 1227 RVMK--NRTTVVVAHRL-STIKNADMIAVVKNGVIVEKGKHENLINIP-DGFYASLIA 1280
+ +T V V+H L +K + IA+++ G I++ G E ++ P + + A +A
Sbjct: 209 ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVA 266
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 4e-16
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 402 FSGF------SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLK 451
F GF S S+ G L+G +G+GK+T++ +I PQ GEVL DG L
Sbjct: 15 FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDN--IAYGKDDATTEEIRVATELANAAKFIDKL 508
E ++ R IG Q+P +F ++++N +A +D + + + + L
Sbjct: 75 EHRI--ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELL 132
Query: 509 PQ-GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALD 566
G+ LS GQKQ + I + +DP++LLLDE + + DAE+EK E L
Sbjct: 133 ATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLK 191
Query: 567 RIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + ++V H + VR AD + V+H G ++ +G+ ++ DP
Sbjct: 192 SLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-16
Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
H K S VQ D++ +I G+ V +G +G+GKST + +L P +G + ++
Sbjct: 28 HFFHRKERSIEAVQ---DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN 84
Query: 1106 GVEIQKLQLKWLRQ---QMGLVSQ-EPVL-FNDTIRAN-IAYGKGGDATEAEIQAASEMA 1159
G + + + ++LR MG Q L D++ + Y D + +E+
Sbjct: 85 GKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEIL 144
Query: 1160 NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
+ + +LS GQ+ R +A A++ PK+L LDE T LD
Sbjct: 145 -----------DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV---- 189
Query: 1220 VVQDALDRVMKN-----RTTVVVA-HRLSTI-KNADMIAVVKNGVIVEKGKHENL 1267
Q + +K + TV++ H I D + ++ G +V G L
Sbjct: 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
|
Length = 325 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 5e-16
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD---AGH 1101
L +VS + P + ++N I G+ V L+G SG GKST++S + G
Sbjct: 5 LKNVSLRLPGSC---LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKG----GDATEAEIQAAS 1156
+ L+ + L ++Q+G++ Q+ +LF ++ N+ + G+A AA
Sbjct: 62 LWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAAL 119
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
E + LSGGQ+ RVA+ RA++ PK LLLDE S LD
Sbjct: 120 ERSGLDGAFHQDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 5e-16
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 29/228 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-------DGINLKEFQLQWI 458
S+ I G L+G SGSGKST++ + G VL+ D N L+ +
Sbjct: 44 SLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 459 R-KKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQ 510
R ++ +V Q+ L ++++N+A+G + + EL A++ D+ P
Sbjct: 104 RTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKP- 162
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM- 569
GE LSGG +QR+ +ARA + ILL+DE SALD +Q+ L +
Sbjct: 163 ------GE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQS 212
Query: 570 -VNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ +T V V+H L ++ + IA++ G+I++ GT ++V +P Y
Sbjct: 213 KLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 5e-16
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 36/228 (15%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +L ++I G A++G +G GKST++ L R P GH+ LDG IQ K + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1120 QMGLVSQEPVLFND-TIRANIAYGK-------------GGDATEAEIQAA--SEMANAHK 1163
++GL++Q D T++ +A G+ +A +QA + +A+
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD--- 138
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
Q DT LSGGQ+QR IA + ++ I+LLDE T+ LD + + +
Sbjct: 139 ------QSVDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE 184
Query: 1224 ALDRVMKNR--TTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLI 1268
L + + + T V H L+ + A + ++ G IV +G + ++
Sbjct: 185 LLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 5e-16
Identities = 62/235 (26%), Positives = 117/235 (49%), Gaps = 28/235 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + + + V + +NL + G+ AL+GE+G+GKST++ +L ++P G I
Sbjct: 6 ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 1103 TLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFND-TIRANIAYGKGG----------DATEA 1150
T++ + KL K Q +G++ QE + ++ T+ N+ G+ D E
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
++AA + L+ D V LS KQ + IA+ ++ D K++++DE T
Sbjct: 123 RVRAAMML-----LRVGLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPT 173
Query: 1211 SAL-DAESERVVQDALDRVMKNRTTVV-VAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
S+L + E + + ++++ K T +V ++H+L+ I+ D V+K+G V G
Sbjct: 174 SSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 6e-16
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ D+ + + G +S+ G+ LVG +G+GK+T++ I P AG V
Sbjct: 4 IDVSDLSVEFGDTT---VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGK----------DDATTEEI 492
L+ G +++ + +++ V Q+ L F ++ + G+ + +
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A E A+F D + + +L SGG++QR+ +ARA+ + +LLLDE T++
Sbjct: 121 ERAMERTGVAQFAD---RPVTSL--------SGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 553 LDAESEKVVQEALDRIMVNRTTVIVA-HRLS-TVRNADMIAVIHRGKIVEKG 602
LD + E + R++ + T + A H L R D + ++ G++ G
Sbjct: 170 LDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 7e-16
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 29/239 (12%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL------ 1114
RD++ + G+ + +VGESGSGK+T++ + PDAG +T + Q L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 1115 ---KWLRQQMGLVSQEPVLFNDTIRANIAYGKG--------GDATEAEIQAASEMANAHK 1163
+ LR + G V Q P D +R ++ G G I+A A
Sbjct: 82 ERRRLLRTEWGFVHQNPR---DGLRMQVSAGGNIGERLMAIGARHYGNIRAE-----AQD 133
Query: 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
++ ++ D + + SGG +QR+ IAR +V P+++ +DE T LD + + D
Sbjct: 134 WLEEVEIDLDR-IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 1224 ALDRVMKNR--TTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
L +++ V+V H L+ + AD + V+K G +VE G + +++ P Y L+
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 8e-16
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 33/189 (17%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E +V Y + S I G A+VG +G+GKST++ L+ P +G V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQE--PVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+ G +K IG Q + ++ + ++ G D +E+R A
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR-----AYL 423
Query: 502 AKFIDKLPQGIDTLVGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+F GE + LSGG+K R+ +A+ +L+ P +LLLDE T+ LD ES
Sbjct: 424 GRFG---------FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 558 EKVVQEALD 566
+ ++EAL
Sbjct: 475 LEALEEALL 483
|
Length = 530 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 8e-16
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 36/235 (15%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ LR+V +Y + I ++ I G VG SG GKST++ +I D +G+
Sbjct: 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTE--EI--RV--A 495
+ I + + + + +G+V Q L+ S+ +N+++G A + EI RV
Sbjct: 60 LFIGEKRMND--VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ A +D+ P+ LSGGQ+QR+AI R ++ +P + LLDE S LDA
Sbjct: 118 AEVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 556 ESEKVVQEALDRIMV-------NRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKG 602
VQ RI + RT + V H ++ + AD I V+ G++ + G
Sbjct: 167 ALR--VQM---RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 9e-16
Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 43/227 (18%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
++ I G A++G +G GKST++ + R P G V +DG +++ + + + ++IGL
Sbjct: 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85
Query: 465 VSQEPVLFTGSI--KDNIAYGK--------------DDATTEEIRVA--TELANAAKFID 506
++Q G I ++ +A G+ ++A T+ ++ T LA+
Sbjct: 86 LAQNATT-PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD------ 138
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
Q +DT LSGGQ+QR IA + ++ I+LLDE T+ LD + + E L
Sbjct: 139 ---QSVDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187
Query: 567 RIMVNR----TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
+ NR T V H L+ R A + + GKIV +G ++V
Sbjct: 188 EL--NREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 9e-16
Identities = 65/263 (24%), Positives = 119/263 (45%), Gaps = 41/263 (15%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAG 1100
IE+ +++ K+ +V ++++ I G+ + ++G SG+GKS ++ +L+ Y+P +G
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 1101 HI--------TLDGVEIQKLQLKWLRQQMGLVSQEPVLF---NDTIRANI---------- 1139
I VE + G + E V F +D +R I
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 1140 AYGKGGDAT----------EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189
+ GD T E + + A I +Q + R LSGG+KQ
Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR--DLSGGEKQ 175
Query: 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKN- 1246
RV +AR + K+P + L DE T LD ++ ++V +AL+ +K + V+ +H I++
Sbjct: 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235
Query: 1247 ADMIAVVKNGVIVEKGKHENLIN 1269
+D ++NG I E+G + ++
Sbjct: 236 SDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK-- 1111
R + +F DL+ + AG+ + + G +G+GK+T++ +L PDAG + G IQ
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 1112 ----LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICS 1167
L +L Q G+ ++ L N G A I A
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHFWQRF----HGSGNAATIWEALAQVGLAGLE-- 124
Query: 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
D VG QLS GQ++RVA+AR + + +LDE +ALD E +
Sbjct: 125 -----DLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL 168
|
Length = 209 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 72/272 (26%), Positives = 135/272 (49%), Gaps = 26/272 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L V SY ++ + + S +I+ G L+G +G+GKST+ ++ P G++
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNI-AYGKD-DATTEEIR-VATE 497
+ G + + + R IG+V Q L FT +++N+ +G+ +T EI V
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFT--VRENLLVFGRYFGMSTREIEAVIPS 118
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A+ K D V LSGG K+R+ +ARA++ DP++L+LDE T+ LD +
Sbjct: 119 LLEFARLESK----ADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 558 EKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ E L ++ +T ++ H + R D + V+ G+ + +G L+++ G
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGC- 229
Query: 616 SQLIRLQEANKESEQTIDG--QRKSEISMESL 645
+I + + + + + R+ E+S E+L
Sbjct: 230 -NVIEIYGGDPDELRELIRPYARRIEVSGETL 260
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-15
Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 16/220 (7%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-------LIDGINLKEFQLQ 456
S+ + G +VG SG+GK+T+ +I +P +GEV +D
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 457 WIRKKIGLVSQEPVLFT-GSIKDNI--AYGKDDATTEEIRVATELANAAKFIDKLPQGID 513
++ IG++ QE L+ ++ DN+ A G + A F ++ + I
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEI- 420
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL--DRIMVN 571
+ ++ +LS G++ R+A+A+ ++K+PRI++LDE T +D ++ V ++ R +
Sbjct: 421 --LDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478
Query: 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
+T +IV+H + V + D A++ GKIV+ G ++VE+
Sbjct: 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-15
Identities = 126/583 (21%), Positives = 220/583 (37%), Gaps = 62/583 (10%)
Query: 708 RRLAYLNKPEIPVILAGTIA-AMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI 766
+ L + P I A +IA +A G+ + + + + I + L + S F
Sbjct: 6 GEILALLRSPFPAITAFSIALGLAGGLAI----IALLASINNAIHEENFLGQGSLFS--- 58
Query: 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARL 826
+ L + L F A AG +I +R EK++ + D + + L
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLL 116
Query: 827 SADAASVRALVGDALARIVQNISTAAAGLIIAFTA--SWQLALIILVMLPLIGVSGYTQM 884
+ D + A I+ A IA+ A S + I + + +IG + +
Sbjct: 117 THDIDQINAF---LFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI-IIGTAAQL-L 171
Query: 885 KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944
FM GF + EE DA +F A+E ++++ + + I++
Sbjct: 172 AFMGGFKFFHAARDEE------DAFNEHTHAIAFGAKE--LKIHGIRRLSFAHGAIQESA 223
Query: 945 VS--------------GGGFGA-SFFLLF--AFYAASFYAGARLVEDGKATFSDVFKVFF 987
+ FG FFLL A +AA+ +A D A + V + +
Sbjct: 224 NNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFA----SIDAAAISAFVLALLY 279
Query: 988 SLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK---GEIE 1044
+ +S + + A + E +++ SD +L IE
Sbjct: 280 IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339
Query: 1045 LHHVSFKYPSRPDVQVFR--DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
L V + + F ++L+I G V +VGE+G GKST+ L Y P G I
Sbjct: 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
LDG + R + + LF+D I + + + Q + A
Sbjct: 400 LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD---EGEHASLDNAQQYLQRLEIAD 456
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
K + G+ T LS GQ++R+A+ A ++D ILL DE + D +R
Sbjct: 457 K-VKIEDGGFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFY 510
Query: 1223 DAL--DRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGK 1263
+ L D + +T ++++H + AD I + G IV+ +
Sbjct: 511 EELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKDTE 553
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-15
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+ V SY Q+ G + ++ G LVG SG GKST++ ++ +GE+
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN 500
I G +N +L+ + I +V Q L+ S+++N+AYG + + +A
Sbjct: 62 WIGGRVVN----ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAE 117
Query: 501 AAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
AA+ +D+ P+ +LSGGQ+QR+A+ RAI+++P + L DE S LD
Sbjct: 118 AARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Query: 555 A 555
A
Sbjct: 167 A 167
|
Length = 356 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 3e-15
Identities = 63/213 (29%), Positives = 110/213 (51%), Gaps = 21/213 (9%)
Query: 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKL 1112
V+ +++LK+RAG+ V+L GE+G+GKST++ +L Y P G I +G ++L
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EEL 71
Query: 1113 QLKWLR--QQMGLV--SQEPVLFND-TIRANIAYGKGGDATEAEIQAASEM-ANAHKFIC 1166
Q +R ++ G+ QE L + ++ NI G + T I M A K +
Sbjct: 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGN--EITPGGIMDYDAMYLRAQKLLA 129
Query: 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD 1226
L+ + L GQ+Q V IA+A+ K ++L+LDE T++L V+ D +
Sbjct: 130 QLKLDIN--PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII- 186
Query: 1227 RVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNG 1256
R +K + ++H+L+ +K +D I V+++G
Sbjct: 187 RDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-15
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 76/210 (36%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--------ERF 435
IEL ++ + P + S I G + G SG+GKS++ + R
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495
P+ ++L + Q P L G++++ + Y DD
Sbjct: 59 GMPEGEDLL-------------------FLPQRPYLPLGTLREQLIYPWDDV-------- 91
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
LSGG++QR+A AR +L P+ + LDEATSALD
Sbjct: 92 ---------------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
Query: 556 ESEK----VVQEALDRIMVNRTTVI-VAHR 580
ESE +++E TVI V HR
Sbjct: 125 ESEDRLYQLLKELG-------ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 49/262 (18%)
Query: 384 IELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I+++++ + + P E + S+ I+ G A++GQ+GSGK+T I + P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 442 EVLI----DGINLKEFQLQW--------------------IRKKIGLVSQ--EPVLFTGS 475
+ + K + + IR+++G+V Q E LF +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG--EHGTQ-----LSGGQK 528
I+ +I +G + + AAK+I+ LVG E Q LSGGQK
Sbjct: 123 IEKDIIFG---PVSMGVSKEEAKKRAAKYIE--------LVGLDESYLQRSPFELSGGQK 171
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTV-RN 586
+R+A+A + +P L+ DE T+ LD + K + E D + +T ++V H L V
Sbjct: 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231
Query: 587 ADMIAVIHRGKIVEKG-THSKL 607
GKI++ G T+ L
Sbjct: 232 TKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 31/235 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E ++S ++ + V +++L + L+G +G+GKST++ ++ P +G I
Sbjct: 1 LETKNLSKRFGKQTAVN---NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI---AYGKG-GDATEAEIQAASE 1157
DG + L ++G + + P L+ + T R N+ G D+ E+ +
Sbjct: 58 IFDGHPWTRKDLH----KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD 113
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
+ N K ++ Q S G KQR+ IA A++ PK+L+LDE T+ LD
Sbjct: 114 LTNTGK--------------KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159
Query: 1218 ERVVQDALDRVMKNRTTVVV-AHRLSTIKN-ADMIAVVKNGVIVEKG---KHENL 1267
+ +++ + + TV++ +H LS ++ AD I ++ GV+ +G K ENL
Sbjct: 160 IQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINKSENL 214
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIG 463
S + +G LVG +G+GKST+++ + P +G + G L+ + + R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 464 LVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVA-TELANAAKFIDKLPQGIDTLVGEHGT 521
L Q+ F + + + D TE + A E+A A DKL + +
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV--------N 125
Query: 522 QLSGGQKQRIAIARAILK-DPRI------LLLDEATSALDAESEKVVQE-ALDRIMV--- 570
QLSGG+ QR+ +A +L+ P I LLLDE ++LD V Q+ ALDR++
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELC 180
Query: 571 --NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
V+ +H L+ T+R+AD + ++ +GK++ G
Sbjct: 181 QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 4e-15
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 36/177 (20%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
SR + +F L+ + AG+ + + G +G GK+T++ +L PD+G + +G + + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYD 1173
+ R NI Y + E+ A N H F ++ G
Sbjct: 69 DEPHR-------------------NILYLGHLPGLKPELSALE---NLH-FWAAIHGGAQ 105
Query: 1174 TM-------VGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
VG G QLS GQ++R+A+AR + + +LDE T+ALD
Sbjct: 106 RTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 4e-15
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 63/213 (29%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-- 1117
RD++ ++RAG+ V + G G+G++ + L P +G ITLDG + + +
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 1118 ---------RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
R++ GLV V N + +
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIALSS------------------------------- 103
Query: 1169 QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV 1228
LSGG +Q+V +AR + +DP++L+LDE T +D ++ + + +
Sbjct: 104 -------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL 150
Query: 1229 MKNRTTVVVAHRLST-----IKNADMIAVVKNG 1256
V++ +S+ + D I V+ G
Sbjct: 151 ADAGKAVLL---ISSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 31/245 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ VSF +R + +F +++L + GK A++G SG GK+T++ L+ PD G I
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAYG--KGGDATEAEIQAAS 1156
DG I + +L +R++M ++ Q LF D + N+AY + + +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 1157 EMANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
M L+ VG RG +LSGG +R A+ARAI +P +++ DE
Sbjct: 125 MM--------KLEA-----VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171
Query: 1211 SALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267
D + V+ + + T VVV+H + + + AD +V + IV G + L
Sbjct: 172 VGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
Query: 1268 INIPD 1272
PD
Sbjct: 232 QANPD 236
|
Length = 269 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 7e-15
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 26/236 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+ R+V Y + + G S + G L+G +G+GK+T + ++ P AG +
Sbjct: 8 IDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA-----YGKDDATTEEIRVA 495
+ G + + + R+++G+V Q L FT +++N+ +G A V
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFT--VRENLLVFGRYFGLSAAAARA-LVP 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
L A KL D VGE LSGG K+R+ +ARA++ DP +L+LDE T+ LD
Sbjct: 121 PLLEFA-----KLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 556 ESEKVVQEALDRIMVN-RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
++ ++ E L ++ +T ++ H + R D + VI G+ + +G L+E
Sbjct: 172 QARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 7e-15
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 50/248 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R + Y + G ++ +G AL+G +G+GKST++ +I P +G +
Sbjct: 12 LCARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 444 LIDGINL------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVAT 496
I G K QL I LV QEP+LF S+K+NI +G
Sbjct: 69 EIGGNPCARLTPAKAHQL-----GIYLVPQEPLLFPNLSVKENILFG------------- 110
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLS---------GGQKQRIAIARAILKDPRILLLD 547
L + K+ Q L+ G QL +Q + I R +++D RIL+LD
Sbjct: 111 -LPKRQASMQKMKQ----LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165
Query: 548 EATSALD-AESEKV---VQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
E T++L AE+E++ ++E L + V ++H+L +R AD I+V+ G I G
Sbjct: 166 EPTASLTPAETERLFSRIRELLAQ---GVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
Query: 603 THSKLVED 610
+ L D
Sbjct: 223 KTADLSTD 230
|
Length = 510 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 33/227 (14%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGI 448
A+P + G S+++ G ALVG SGSGKS + AG VL+DG
Sbjct: 13 QAAQP---LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 449 NLKEFQLQWIRKKIGLVSQEP--------VLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
+ L+ +KI + Q P + T + + +A GK DDAT A L
Sbjct: 70 PVAPCALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL 127
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
NAA+ + P ++SGG QR+ IA A+L + ++ DE T+ LD ++
Sbjct: 128 ENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176
Query: 559 KVVQEALDRIMVNRT--TVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
+ + L+ I+ R ++V H + V R AD +AV+ G+IVE+G
Sbjct: 177 ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
Length = 254 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 9e-15
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 26/223 (11%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-I 458
I G S+ + G ++G++G GK+T++ + ++G + +DG ++ +
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-- 515
R I V Q +F ++++N+ G LA + K+P I L
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTG--------------LAALPRRSRKIPDEIYELFP 119
Query: 516 -----VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-- 568
+G G LSGGQ+Q++AIARA++ P++LLLDE T + K + + R+
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
++V L R AD V+ RG++V G +L ED
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 9e-15
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 33/222 (14%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQL 455
+I + S+ + SG A++G SGSGK+T++ I + G++L +G K Q
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE-IRVATELANAAKFIDKLPQGIDT 514
Q K + V Q+ +L G T E + L K D + +
Sbjct: 80 Q---KCVAYVRQDDILLPG------------LTVRETLTYTAILRLPRKSSDAIRKKRVE 124
Query: 515 LVGEHG-----------TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
V +SGG+++R++IA +L DP++L+LDE TS LD+ + +
Sbjct: 125 DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184
Query: 564 ALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
L ++ NR ++ H R R D I ++ G+IV G
Sbjct: 185 TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
G + + G +G +G+GK+T I ++ P +G + G ++ + + +R+ IG
Sbjct: 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIG 69
Query: 464 LVSQEPVLFTG-SIKDNIA-----YG--KD--DATTEEIRVATELANAAKFIDKLPQGID 513
+V Q + + ++N+ YG KD + EE+ EL AA D
Sbjct: 70 IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA----------D 119
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
VG SGG ++R+ IA +++ P +L LDE T+ LD + + + + + +
Sbjct: 120 RPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 574 TVIV-AHRLSTVRN-ADMIAVIHRGKIVEKGT 603
T+++ H + D IA+I G+I+ +GT
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-------DGINLKEF 453
+ S+S+++G L G SGSGKST++ + Y P G++L+ D + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 454 QLQWIRKK-IGLVSQ---------------EPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
++ +R+ IG VSQ EP+L G + +A K + +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG-VPREVARAKAADLLTRLNLPER 144
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L + A SGG++QR+ IAR + D ILLLDE T++LDA +
Sbjct: 145 LWSLAP-----------------ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN 187
Query: 558 EKVVQEALD 566
VV E +
Sbjct: 188 RAVVVELIR 196
|
Length = 235 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 1e-14
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 24/238 (10%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G+ L VS +P+R +L+G +GSGK+T + L R D +G
Sbjct: 33 GKTVLDQVSMGFPAR----------------AVTSLMGPTGSGKTTFLRTLNRMNDKVSG 76
Query: 1101 H-----ITLDGVEIQKLQ-LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQA 1154
+ + L G I + + R+++G++ Q P F +I N+ G +
Sbjct: 77 YRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR-KE 135
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+A A L + + +LSGGQ+Q + +AR + +P++LLLDE TSALD
Sbjct: 136 FRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195
Query: 1215 AESERVVQDALDRVMKNRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIP 1271
+ +++ + + T ++V H L+ + +D A+ +G +VE+G E L + P
Sbjct: 196 PTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253
|
Length = 276 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 28/212 (13%)
Query: 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+HH+ K + + + + + L ++ G+T+AL+GESGSGKST++++L D +G
Sbjct: 7 VEVHHLK-KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG 65
Query: 1101 HITLDGVEIQKL---QLKWLR-QQMGLVSQEPVLFNDTIRA--NI---AYGKGGDATEAE 1151
++L G + ++ LR + +G V Q +L T+ A N+ A +G + ++
Sbjct: 66 EVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI-PTLNALENVELPALLRGESSRQSR 124
Query: 1152 IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
A + + Q G + QLSGG++QRVA+ARA P +L DE T
Sbjct: 125 NGAKALLE---------QLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTG 175
Query: 1212 ALDAESERVVQDALDRVMKNR----TTVVVAH 1239
LD ++ + D L + NR T ++V H
Sbjct: 176 NLDRQTGDKIADLLFSL--NREHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 35/253 (13%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV------- 1107
+ + R+L+ ++ G+T+A+VGESGSGKS L R + G + D +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85
Query: 1108 ------EIQKLQLKWLR-QQMGLVSQEPVL-------FNDTIRANIAYGKGGDATEAEIQ 1153
E Q++ +R M ++ QEP+ + I +I +G EA +
Sbjct: 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEA-MV 144
Query: 1154 AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
A M + + + T++ QLSGG +QRV IA A+ P +L+ DE T+AL
Sbjct: 145 EAKRMLDQVRIPEA-----QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTAL 199
Query: 1214 DAESE-RVVQDALDRVMKNRTT---VVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268
D + +++Q L +V++ + + + H + + AD + V+ G VE G E +
Sbjct: 200 DVTIQAQILQ--LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257
Query: 1269 NIPDGFYA-SLIA 1280
+ P Y +L+A
Sbjct: 258 HAPQHPYTRALLA 270
|
Length = 623 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-14
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 42/224 (18%)
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDG--INLKEFQLQWIRKKIGL 464
G A++G SG+GK+T+++ + F P+ +G VL++G I+ KE +R
Sbjct: 50 PGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKE-----MRAISAY 103
Query: 465 VSQEPVLFTGSI--------------KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
V Q+ LF ++ + + +E+ A L A
Sbjct: 104 VQQDD-LFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA-------- 154
Query: 511 GIDTLVGEHGTQ--LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
+T +G G LSGG+++R+A A +L DP +L DE TS LD+ V + L +
Sbjct: 155 --NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212
Query: 569 MVNRTTVIVA-HRLST--VRNADMIAVIHRGKIVEKGTHSKLVE 609
T+I H+ S+ D I ++ G++ G+ + V
Sbjct: 213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 38/215 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S + G L+G++G+GKST++ L+ Y P +G V + G ++ +
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVSSL- 88
Query: 460 KKIGL-VSQEPVLFTGSIKDNIA-----YGKD----DATTEEIRVATELANAAKFIDKLP 509
+GL P L TG ++NI G D +EI +EL FID LP
Sbjct: 89 --LGLGGGFNPEL-TG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSELG---DFID-LP 139
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRI 568
V S G K R+A A A +P ILL+DE + DA EK + + +
Sbjct: 140 ------VKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+T ++V+H S+++ D V+ +GKI G
Sbjct: 190 KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-14
Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 17/164 (10%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTV---VSLLQRFYDPDAGHITLDGVEIQKLQ 1113
QV + ++L + G+ + LVG SG GKST+ V+ L+R +G I + G + +L+
Sbjct: 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELE 72
Query: 1114 LKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASEMANAHKFICSLQQG 1171
+ + +V Q L+ + ++R N+AYG K +AEI+ +A A + I L+
Sbjct: 73 PA--DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE--RVAEAAR-ILELEP- 126
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
++ + +LSGGQ+QRVA+ RAIV++P + L DE S LDA
Sbjct: 127 ---LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 28/230 (12%)
Query: 402 FSGF------SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKE 452
F GF S+ + G ++G +G+GK+T++ +I P G VL G L E
Sbjct: 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE 71
Query: 453 FQLQWIRKKIGLVSQEPVLFTG-SIKDN--IAYGKDDA--TTEEIRVATELAN----AAK 503
Q+ R IG Q+P +F ++ +N +A +D + + R++ E + +
Sbjct: 72 HQI--ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE 129
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQ 562
I + D L G LS GQKQ + I +++DP++LLLDE + + D E+EK
Sbjct: 130 TIGLADE-ADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA- 183
Query: 563 EALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
E L + + V+V H + VR+ AD + V+H+G ++ +G+ ++ DP
Sbjct: 184 ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 5e-14
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 15/243 (6%)
Query: 365 PEIDAYDTKGKILDDIR---GDIELRDVYFSYPARPNEQIFS--GFSISISSGTTAALVG 419
PE++ D +L IEL+DV+ + A + F+ + I+ G +VG
Sbjct: 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVG 375
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
++G GKST+ L Y PQ GE+L+DG + R + + LF I
Sbjct: 376 ENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI--- 432
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
G D+ + A + + DK+ I+ T LS GQ++R+A+ A L+
Sbjct: 433 ---GPDEGEHASLDNAQQYLQRLEIADKV--KIEDGGFSTTTALSTGQQKRLALICAWLE 487
Query: 540 DPRILLLDEATSALDAESEKVVQEAL--DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
D ILL DE + D ++ E L D +T +I++H AD I + G
Sbjct: 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547
Query: 598 IVE 600
IV+
Sbjct: 548 IVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 61/247 (24%), Positives = 121/247 (48%), Gaps = 46/247 (18%)
Query: 1043 IELHHVS--FKYPS----RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ ++S F+Y + R V+ + L+ +R G+T+A++GE+GSGKST+ +L +
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV-----------LFNDTIRANIAYGKGG 1145
P +G + +D + + Q++ ++ Q+P + + +R N
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN------- 117
Query: 1146 DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQ-------LSGGQKQRVAIARAIV 1198
T+ E + + +L+Q VG L+ GQKQR+ +ARA++
Sbjct: 118 --TDLEPEQREKQIIE-----TLRQ-----VGLLPDHASYYPHMLAPGQKQRLGLARALI 165
Query: 1199 KDPKILLLDEATSALD-AESERVVQDALDRVMKNRTTVV-VAHRLSTIKN-ADMIAVVKN 1255
PK+++ DEA ++LD + +++ L+ K + + V L +K+ +D + V+
Sbjct: 166 LRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ 225
Query: 1256 GVIVEKG 1262
G +VE+G
Sbjct: 226 GEVVERG 232
|
Length = 267 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 6e-14
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 33/214 (15%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKIG 463
S + +G LVG +G+GKST+++ + +G + G L+ + + R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 464 LVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
L Q+ F + + + D TE + ++A A DKL + + Q
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELL---NDVAGALALDDKLGRSTN--------Q 125
Query: 523 LSGGQKQRIAIARAILK-------DPRILLLDEATSALDAESEKVVQE-ALDRIMVN--- 571
LSGG+ QR+ +A +L+ ++LLLDE ++LD V Q+ ALDR++
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-----VAQQSALDRLLSALCQ 180
Query: 572 --RTTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
V+ +H L+ T+R+A ++ RGK++ G
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASG 214
|
Length = 248 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-14
Identities = 56/201 (27%), Positives = 106/201 (52%), Gaps = 26/201 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L +VS + R +V D++L+++ GK + L+G +G+GKST+V ++ PD G I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+ KL++ ++ Q++ L + P+ N +R + G + +I A + A
Sbjct: 62 KRN----GKLRIGYVPQKLYLDTTLPLTVNRFLRL-----RPG-TKKEDILPALKRVQAG 111
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
I + Q +LSGG+ QRV +ARA++ P++L+LDE T +D + +
Sbjct: 112 HLIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY 160
Query: 1223 DALDRVMK--NRTTVVVAHRL 1241
D +D++ + + ++V+H L
Sbjct: 161 DLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 7e-14
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 404 GFSISISSGT-----TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
F++ + G+ ++G +G GK+T I ++ P G++ I+ + ++ Q+I
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQYI 70
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+ + G+++D + TE+A P I+ ++
Sbjct: 71 KAD----------YEGTVRD-LLSSITKDFYTHPYFKTEIAK--------PLQIEQILDR 111
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVI 576
+LSGG+ QR+AIA + KD I LLDE ++ LD E + + + R N +T +
Sbjct: 112 EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV 171
Query: 577 VAH 579
V H
Sbjct: 172 VEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 7e-14
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 34/214 (15%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKST----VVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
+V D++L + +G+ V L+G +G+GK+T VV ++ R DAG+I +D +I L L
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR----DAGNIIIDDEDISLLPL 72
Query: 1115 -KWLRQQMGLVSQEPVLFN-----DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
R+ +G + QE +F D + A + A + E +A M H I L
Sbjct: 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH--IEHL 130
Query: 1169 QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES----ERVVQDA 1224
+ D+M G LSGG+++RV IARA+ +PK +LLDE + +D S +R+++
Sbjct: 131 R---DSM----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL 183
Query: 1225 LDRVM-------KNRTTVVVAHRLSTIKNADMIA 1251
D + R T+ V R + +IA
Sbjct: 184 RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217
|
Length = 241 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 8e-14
Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG--V 1107
F+Y D V + LNL LVG +G GKST+ L P G + G +
Sbjct: 9 FRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 1108 EIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG-KGGDATEAEI----QAASEMAN 1160
+ K L LRQQ+ V Q+P +F I ++IA+ + EAEI A + +
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
A F Q LS GQK+RVAIA A+V + LLLDE T+ LD
Sbjct: 126 AQHF---RHQPIQC--------LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
Query: 1221 VQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
+ + R++ + ++ +H + I +D + V++ G I+ G
Sbjct: 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-14
Identities = 63/245 (25%), Positives = 131/245 (53%), Gaps = 27/245 (11%)
Query: 1043 IELHHVSFKYPS--RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I++ +VS +Y S R V+ +++L+++ G+ +VG SG+GK+T+ ++ +P +G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 1101 HITL----DGVEIQKLQLKW---LRQQMGLVSQEPVLF-NDTIRANIAYGKGGDATEA-E 1151
+ + + V++ K ++ +G++ QE L+ + T+ N+ TEA
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNL--------TEAIG 391
Query: 1152 IQAASEMANAHKFICSLQQGYDTMVGERGL-----QLSGGQKQRVAIARAIVKDPKILLL 1206
++ E+A I G+D E L +LS G++ RVA+A+ ++K+P+I++L
Sbjct: 392 LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVIL 451
Query: 1207 DEATSALDAESERVVQDAL--DRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
DE T +D ++ V ++ R +T ++V+H + + + D A++++G IV+ G
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
Query: 1264 HENLI 1268
E ++
Sbjct: 512 PEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 8e-14
Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 50/207 (24%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRK 460
S + +G + G G+G++ + + P +GE+ +DG + IR
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 461 KIGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
I V ++ ++ S+ +NIA L
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA--------------------------LSS------ 103
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG +Q++ +AR + +DPR+L+LDE T +D ++ + + + V+
Sbjct: 104 -----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 577 VAHRLST-----VRNADMIAVIHRGKI 598
+ +S+ + D I V++ G+I
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 63/239 (26%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG-----VEIQKL--- 1112
RD++ + G+ + +VGESGSGK+T+++ L PDAG + ++ L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1113 QLKWL-RQQMGLVSQEPVLFNDTIR------ANIA----------YGKGGDA-----TEA 1150
+ + L R + G V Q P D +R NI YG
Sbjct: 82 ERRRLLRTEWGFVHQHPR---DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERV 138
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
EI AA + + SGG +QR+ IAR +V P+++ +DE T
Sbjct: 139 EIDAAR-------------------IDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179
Query: 1211 SALDAESERVVQDALDRVMKNRTT------VVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262
LD VQ L +++ V+V H L+ + A + V+K G +VE G
Sbjct: 180 GGLDVS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIRKK 461
S SI G A+VG SGSGKST++ L+ P +G+V+ +G + + + + +K
Sbjct: 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK 88
Query: 462 IGLVSQEPVL---FTGSIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKLPQGID 513
+G + Q L FT +N+A K A A E+ A G++
Sbjct: 89 LGFIYQFHHLLPDFTAL--ENVAMPLLIGKKKPAEINS--RALEMLAAV--------GLE 136
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
++LSGG++QR+AIARA++ +PR++L DE T LDA + + + L + +
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196
Query: 574 T--VIVAHRLS 582
T ++V H L
Sbjct: 197 TAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 55/236 (23%), Positives = 92/236 (38%), Gaps = 54/236 (22%)
Query: 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ- 454
R +FS S ++++G + G +G+GK+T++ ++ P AGEV G ++ +
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE 71
Query: 455 -----LQWIRKKIGLVSQ----EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505
L ++ + G+ ++ E + F I A A
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHG-------SGNAATIWEALAQVGLAGLE 124
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D LP G QLS GQ++R+A+AR L + +LDE +ALD E ++
Sbjct: 125 D-LPVG----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL---- 169
Query: 566 DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
T ++ AH +G IV TH L A + + L
Sbjct: 170 -------TALMAAH-------------AAQGGIVLLTTHQPLPIAS--AQIRRLDL 203
|
Length = 209 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 57/220 (25%), Positives = 117/220 (53%), Gaps = 25/220 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S ++ G T A++G++GSGKST+ ++ +P +GE+LID L + ++I ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMI 92
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK---FIDKLPQGIDTLVGEHGT- 521
Q+P + S+ + +R+ T+L + I+ L Q L+ +H +
Sbjct: 93 FQDP---STSLNPRQRISQ--ILDFPLRLNTDLEPEQREKQIIETLRQV--GLLPDHASY 145
Query: 522 ---QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR------ 572
L+ GQKQR+ +ARA++ P++++ DEA ++LD ++ L +M+
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS----MRSQLINLMLELQEKQGI 201
Query: 573 TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + V L +++ +D + V+H+G++VE+G+ + ++ P
Sbjct: 202 SYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 32/243 (13%)
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPD------AGHITLDGVEIQKLQLKWLRQQ 1120
++ G+ V +VGESGSGKS VS L D A + +G ++Q++ K R
Sbjct: 29 SVKQGEVVGIVGESGSGKS--VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86
Query: 1121 MGLVSQEPVLFNDTIRA-NIAYGKGGDATEA--EIQAASEMANAHKFICSLQQGYDTMVG 1177
+G ++ ++F D + + N Y G EA Q ++ + I L VG
Sbjct: 87 VG--AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL-----NQVG 139
Query: 1178 ----ERGL-----QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV 1228
L QLSGG QRV IA AI PK+L+ DE T+ALD + + + L +
Sbjct: 140 IPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199
Query: 1229 MK--NRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLINIPDGFY--ASLIALHS 1283
+ N V++ H L+ + + A I V+ G +VE GK ++ P Y A L AL
Sbjct: 200 QQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRALPE 259
Query: 1284 SAS 1286
A
Sbjct: 260 FAQ 262
|
Length = 326 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-13
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 36/216 (16%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--------YDPDAGHITLDGVEIQK 1111
V R+LNL+I+ G VA+VG+SG+GK+T++ ++ Y PD+G + + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEA-EIQAASEMANAHKFICSLQQ 1170
L + G V+ L + T GD A EI + +++A +
Sbjct: 458 LIPGEYEPEFGEVTILEHLRSKT----------GDLNAAVEILNRAGLSDAVLYRRKFS- 506
Query: 1171 GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK 1230
+LS GQK+R +A+ + + P +LL+DE + LD + V + + +
Sbjct: 507 -----------ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555
Query: 1231 NRT-TVVVAHRLSTIKNA---DMIAVVKNG-VIVEK 1261
T++V + NA D + +V G V V +
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVNE 591
|
Length = 593 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-13
Identities = 53/202 (26%), Positives = 102/202 (50%), Gaps = 10/202 (4%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
+I+ A +G +G+GK+T +S++ P +G VL+ G ++ E L +R+ +G+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 465 VSQEPVLFTG-SIKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
Q +LF ++ ++I Y + + E +L A D G+ E
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDT---GLHHKRNEEAQD 1061
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGG ++++++A A + D ++++LDE TS +D S + + + L + RT ++ H +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121
Query: 583 TVRN-ADMIAVIHRGKIVEKGT 603
D IA+I +G++ GT
Sbjct: 1122 EADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-13
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR+V F+Y N +++I G L+G +GSGKST+ L+ Y PQ+GE+
Sbjct: 323 LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG + QL+ RK V + LF + G + + + K
Sbjct: 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQ--------LIEK 426
Query: 504 FIDKLPQGIDTLVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
++ +L T + + +LS GQK+R+A+ A+L++ IL+LDE + D +
Sbjct: 427 WLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486
Query: 561 V-QEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKIVE 600
Q L + T+ ++H +AD + + G++ E
Sbjct: 487 FYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S I G +G +G+GKST + ++ P +G+V ++G + + +++R IGLV
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLV 102
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN--AAKFIDKLPQ-----GIDTLVGE 518
+ D + + V + +F ++L ++ +
Sbjct: 103 MGQ---KLQLWWDL-------PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIV- 577
+LS GQ+ R +A A+L P++L LDE T LD ++ ++E L R ++
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 578 -AHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610
H + D + +I +G++V GT ++L E
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 41/229 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+R +F G S ++++G + G +G GK+T++ ++ P +GEV +G L E +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV--ATELANAAKFIDKLPQGI 512
+ R + L + S +N+ + + + A F D LP
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAA- 126
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
QLS GQ++R+A+AR L + +LDE T+ALD + +
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-------AGVALLA--- 167
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
++ AH + RG IV TH L ++ +RL
Sbjct: 168 -GLLRAH-------------LARGGIVLLTTHQDLGLVE----ARELRL 198
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 26/226 (11%)
Query: 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108
S +V+ + ++ I G+ V +G +G+GK+T + +L P +G + + G+
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 1109 IQKLQLKWLRQQMGLVSQE--------PVLFNDTIRANIA-YGKGGDATEAEIQAASEMA 1159
K + K+LR+ +G+V + PV+ D+ A Y + + SE+
Sbjct: 85 PWKRRKKFLRR-IGVVFGQKTQLWWDLPVI--DSFYLLAAIYDLPPARFKKRLDELSELL 141
Query: 1160 NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
+ + + DT V QLS GQ+ R IA A++ +P+IL LDE T LD ++
Sbjct: 142 DLEELL-------DTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190
Query: 1220 VVQDALDRVMKNRTTVVV--AHRLSTI-KNADMIAVVKNGVIVEKG 1262
+++ L + R T V+ +H + I A + V+ G ++ G
Sbjct: 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ---- 1110
R +F L+ + AG+ + L G +GSGK+T++ L+ P AG I LDG +I
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG---KGGDATEAEIQAASEMANAHKFICS 1167
+L + + +P L T+ N+ + GG+ + A + A +
Sbjct: 72 AEACHYLGHRNAM---KPAL---TVAENLEFWAAFLGGEELDIA-AALEAVGLAP--LAH 122
Query: 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
L GY LS GQK+RVA+AR +V + I +LDE T+ALDA + + +
Sbjct: 123 LPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 47/230 (20%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ V+ + D + +++ ++ G+ L+G +G+GK+T ++ +P G I
Sbjct: 3 LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
T +G + + + ++G + +E L+ T+ + Y KG E + + + +
Sbjct: 60 TWNGGPLSQEI----KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWL 115
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
+ ++ +LS G +Q++ A++ +P++L+LDE S LD +
Sbjct: 116 E---------RLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166
Query: 1219 RVVQDALDRVMKNRTTVVVA-HRLSTIKN-ADMIAVVKNGVIVEKGKHEN 1266
+++DA+ + + T++ + HR+ ++ D + ++K G V G E+
Sbjct: 167 ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 21/213 (9%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA--GHITLDGVEIQKLQL 1114
V+ ++L++R G+ V L GE+G+GKST++ +L Y G I G ++ +
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 1115 KWL-RQQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQAASEMA-NAHKFIC 1166
+ R + ++ QE L + ++ NI G GG A + M A +
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGG------RMAYNAMYLRAKNLLR 126
Query: 1167 SLQQGYDTMVGERGL-QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDAL 1225
LQ D R + GGQ+Q V IA+A+ K ++L+LDE +S+L + ++ D +
Sbjct: 127 ELQ--LDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII 184
Query: 1226 -DRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNG 1256
D V ++H+L+ +K D I V+++G
Sbjct: 185 RDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-13
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 55/227 (24%)
Query: 1020 IDRESKIDPSDESGTILEDVKGE--IELHHVSFKYPSRP--------DVQVFRDLNLKIR 1069
++ +K +P E T+ V GE +++ ++ ++P R +V ++ +
Sbjct: 292 LEHPAKQEPPIEQDTV---VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLW 348
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWLRQQMGLVSQ 1126
G+T++LVGESGSGKST L R + G I +G I L +L+ LR+ + + Q
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408
Query: 1127 EPVLFNDTIRANIAYG----------KGGDATEAEIQAASEMAN---------AHKFICS 1167
+P D R + G A A + E H+F
Sbjct: 409 DPYASLDP-RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF--- 464
Query: 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
SGGQ+QR+ IARA+ +PK+++ DEA SALD
Sbjct: 465 ----------------SGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 3e-13
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 38/232 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
L+ + S I G ++G +G+GKST++ LI Y P +G+V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 444 LIDGINLKEFQLQWIRKKIGL-VSQEPVLFTGSIKDNI---------AYGKDDATTEEIR 493
+ G ++ + I L +P L TG ++NI + D +EI
Sbjct: 85 KVTG------KVAPL---IELGAGFDPEL-TG--RENIYLRGLILGLTRKEIDEKVDEI- 131
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
E A FID+ + S G R+A + A +P ILLLDE +
Sbjct: 132 --IEFAELGDFIDQPVKTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAVG 178
Query: 554 DAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKGT 603
DA EK ++ + + N+T V+V+H L ++ D + G+I +G+
Sbjct: 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 4e-13
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 1183 LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR-TTVV-VAHR 1240
LSGG++QR+A AR ++ PK + LDEATSALD ESE D L +++K TV+ V HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE----DRLYQLLKELGITVISVGHR 147
Query: 1241 LSTIKNADMI 1250
S K D +
Sbjct: 148 PSLWKFHDRV 157
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 28/194 (14%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQ 456
I +G + + G T AL+G+SGSGKST+++++ D +GEV + G L +E + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 457 WIRKKIGLVSQEPVLF-TGSIKDNIAY-----GKDDATTEEIRVAT-ELANAAKFIDKLP 509
K +G V Q +L T + +N+ G+ + A E K +D LP
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP 144
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
QLSGG++QR+A+ARA P +L DE T LD ++ + + L
Sbjct: 145 -----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FS 191
Query: 570 VNR----TTVIVAH 579
+NR T ++V H
Sbjct: 192 LNREHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-13
Identities = 68/205 (33%), Positives = 98/205 (47%), Gaps = 35/205 (17%)
Query: 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVV 1088
+ + L DVK +L V+F P DV DLN +RAG+T+ +VGESGSGKS
Sbjct: 5 AQQQADALLDVK---DLR-VTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTA 59
Query: 1089 SLLQRFYDPD---AGHITLDGVEIQKL---QLKWLR-QQMGLVSQEPVL-FNDTIRAN-- 1138
L + G T +G EI L +L LR +Q+ ++ Q+P+ N +R
Sbjct: 60 FALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQ 119
Query: 1139 ----IAYGKGGDATEAEIQA-----ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189
+ KG EA ++ A +M A K + M + SGG +Q
Sbjct: 120 LMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM--------KMYPH---EFSGGMRQ 168
Query: 1190 RVAIARAIVKDPKILLLDEATSALD 1214
RV IA A++ PK+L+ DE T+ALD
Sbjct: 169 RVMIAMALLCRPKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 41/184 (22%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------Q 1113
+F L+ + AG+ V + G +G+GK++++ +L PDAG + G I++
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 1114 LKWLRQQMG----LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ 1169
L +L Q G L + E + F + G + + A L
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLH--------GPGDDEALWEA------------LA 115
Query: 1170 QGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
Q VG G QLS GQ++RVA+AR + + +LDE +A+D + ++
Sbjct: 116 Q-----VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA 170
Query: 1224 ALDR 1227
L +
Sbjct: 171 LLAQ 174
|
Length = 204 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-13
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 32/228 (14%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWLRQ 1119
+ L++ G+T+ +VGESG GKST + G + G ++ + + + +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYD---TMV 1176
+ ++ Q+P L + R I EI A E + S Q+ D M+
Sbjct: 99 DIQMIFQDP-LASLNPRMTIG----------EIIA--EPLRTYHPKLSRQEVKDRVKAMM 145
Query: 1177 GERGL----------QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD 1226
+ GL + SGGQ QR+ IARA++ +PK+++ DE SALD + V + L
Sbjct: 146 LKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQ 205
Query: 1227 RVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
++ + + + +AH L+ +K+ +D + V+ G VE G ++ + + P
Sbjct: 206 QLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP 253
|
Length = 331 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-13
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWIR- 459
S+ + +G +L G++G+GKST++ ++ Y P GE++ +G +E Q IR
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EELQASNIRD 78
Query: 460 ---KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-- 513
I ++ QE L S+ +NI G + + A K + +L I+
Sbjct: 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA 138
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR- 572
T VG G GQ+Q + IA+A+ K R+L+LDE T++L ESE V + R +
Sbjct: 139 TPVGNLG----LGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHG 193
Query: 573 -TTVIVAHRLSTVRN-ADMIAVIHRGK 597
+ ++H+L+ V+ +D I VI G+
Sbjct: 194 IACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-13
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 29/193 (15%)
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPD----AGHITLDGVEIQKLQLK----WLR 1118
+ G+ +A++G SG+GK+T+++ L F P +G + L+G+ I +++ +++
Sbjct: 47 VAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQ 105
Query: 1119 QQ----MGLVSQEPVLFNDTIR--ANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGY 1172
Q L +E ++F +R + + + + +QA L++
Sbjct: 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-----------LRKCA 154
Query: 1173 DTMVGERGLQ--LSGGQKQRVAIARAIVKDPKILLLDEATSALDAES-ERVVQDALDRVM 1229
+T +G G LSGG+++R+A A ++ DP +L DE TS LD+ VVQ
Sbjct: 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214
Query: 1230 KNRTTVVVAHRLS 1242
K +T + H+ S
Sbjct: 215 KGKTIICTIHQPS 227
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLKEFQLQWI 458
I G ++++ G A++G +GSGKST+ I Y+ +G +L G +L E +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 459 -RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-- 515
R + L Q P G +A R L F+ L + L
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSA-RGEEPLD-LLDFLKLLKAKLALLGM 132
Query: 516 ----------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
G SGG+K+R I + L +P++ +LDE S LD ++ K+V E +
Sbjct: 133 DEEFLNRSVNEG-----FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 566 DRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
+R+ +R+ +I+ H RL D + V+ G+IV+ G
Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-13
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 34/203 (16%)
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQ 1126
+I G+ + ++G +G GK+T V LL AG I D + L++ + Q +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLKVSYKPQYISPDYD 415
Query: 1127 EPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186
V D +R+ I G + EI +L+ + V E LSGG
Sbjct: 416 GTV--EDLLRSAIRSAFGSSYFKTEI--------VKPL--NLEDLLERPVDE----LSGG 459
Query: 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTI 1244
+ QRVAIA A+ ++ + LLDE ++ LD E +V + R ++N T +VV H + I
Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519
Query: 1245 KNADMIAVVKNGVIV---EKGKH 1264
D ++ + +IV E GKH
Sbjct: 520 ---DYVS---DRLIVFEGEPGKH 536
|
Length = 591 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 56/225 (24%), Positives = 112/225 (49%), Gaps = 22/225 (9%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKLQL 1114
D ++ + +NL ++ G+ A++G +GSGKST+ + Y+ +G I G ++ +L+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 1115 -KWLRQQMGLVSQEP-----VLFNDTIRANIAYGKGGDA-TEAEIQAASEMANAHKFICS 1167
+ R + L Q P V + +R+ + +A A + ++ + K + +
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSAL------NARRSARGEEPLDLLDFLKLLKA 125
Query: 1168 LQQ--GYDTMVGERGLQ--LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQD 1223
G D R + SGG+K+R I + + +PK+ +LDE S LD ++ ++V +
Sbjct: 126 KLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1224 ALDRVM-KNRTTVVVAH--RLSTIKNADMIAVVKNGVIVEKGKHE 1265
++R+ +R+ +++ H RL D + V+ +G IV+ G E
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-12
Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 24/228 (10%)
Query: 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-- 1110
R V +D++ ++RAG+ V + G +G+G+S +V + P +G I L+G ++
Sbjct: 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 1111 ----KLQLKWL------RQQMGLVSQEPVLFNDTIRA--NIAYGKGGDATEAEIQA-ASE 1157
+ + L R GLV + N + + +GG I+ A E
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE 385
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
+ D LSGG +Q++ +AR + + P +L+ + T LD +
Sbjct: 386 LIEEFDVRAP---SPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438
Query: 1218 ERVVQDALDRVMKNRTTV-VVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
+ + L + V +++ L I +D IAV+ G IV
Sbjct: 439 IEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486
|
Length = 501 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
+ S G +G +G+GKST + +I + P +G V + G ++ + + +
Sbjct: 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-V 73
Query: 459 RKKIG-----------LVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFID 506
++ IG + +E + F I YG K + + EL
Sbjct: 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGI-----YGMKGQLLKQRVEEMIELVG------ 122
Query: 507 KLPQGIDTLVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
L E QLS G +QR+ +A+A++ DP++L+LDE T+ LD ++
Sbjct: 123 --------LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN 174
Query: 564 ALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+ I ++T ++ H + V D + +I++GKIV +L
Sbjct: 175 VIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 50/215 (23%), Positives = 104/215 (48%), Gaps = 29/215 (13%)
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG---- 1122
+ + G+ V +G +G+GKST + ++ + PD+G + + G ++ + + +++ +G
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIGYLPE 82
Query: 1123 -------LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
+ +E + F I YG G + ++ E+ L+
Sbjct: 83 HNPLYLDMYVREYLQFIAGI-----YGMKGQLLKQRVEEMIEL-------VGLRPEQHKK 130
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTV 1235
+G QLS G +QRV +A+A++ DPK+L+LDE T+ LD +++ + + K++T +
Sbjct: 131 IG----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTII 186
Query: 1236 VVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
+ H + ++ D + ++ G IV K + L
Sbjct: 187 LSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-12
Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 69/279 (24%)
Query: 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
P P ++I S+S G ++G +G+GKST++ ++ AG +D K
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD----K 56
Query: 452 EFQLQ-WIRK--KIGLVSQEPVL------------FTGSIKD--------NIAYGKDDAT 488
EF + K+G + QEP L IKD + + + DA
Sbjct: 57 EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD 116
Query: 489 TEEIRVATELANAAKFID---------KLPQGIDTLVGEHG----TQLSGGQKQRIAIAR 535
+ + E A + ID KL +D L T+LSGG+++R+A+ R
Sbjct: 117 MDAL--LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCR 174
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR---LSTVRNADMIAV 592
+L P +LLLDE T+ LDAES +++ L T V V H L V A I
Sbjct: 175 LLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNV--AGWILE 230
Query: 593 IHRGK-IVEKGTHSKLVEDPEGAYSQLIRL-QEANKESE 629
+ RG+ I +G +S +E E RL QE +ES
Sbjct: 231 LDRGRGIPWEGNYSSWLEQKEK------RLEQEEKEESA 263
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 31/207 (14%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI---- 1109
+ P V+ L + G+ +ALVGE+G+GKST++ +L Y DAG I G E+
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
Query: 1110 ----QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
Q+ + + Q++ L+ Q TI NI G+ I A A K +
Sbjct: 73 PKSSQEAGIGIIHQELNLIPQL------TIAENIFLGREFVNRFGRIDWKKMYAEADKLL 126
Query: 1166 CSL--QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL-DAESERVVQ 1222
L + D +VGE LS G++Q V IA+ + + K++++DE T AL D E+E
Sbjct: 127 ARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE---- 178
Query: 1223 DALDRVMK-----NRTTVVVAHRLSTI 1244
+L RV++ R V ++HRL I
Sbjct: 179 -SLFRVIRELKSQGRGIVYISHRLKEI 204
|
Length = 501 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-12
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 31/219 (14%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--------K 1111
RD++ +RAG+ + + G G+G++ + L +G I LDG ++ K
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 1112 LQLKWL---RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
+ ++ R+ GLV + N T+ + + + G I E A A ++I L
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG-----LIDRRKERALAERYIRRL 388
Query: 1169 Q---QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDAL 1225
+ + +G LSGG +Q+V +AR + DPK+L+LDE T +D ++ + +
Sbjct: 389 RIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444
Query: 1226 DRVMKNRTTVVVAHRLST-----IKNADMIAVVKNGVIV 1259
+ +++ +S+ + +D I V++ G IV
Sbjct: 445 RELAAEGKAILM---ISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 28/194 (14%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL-QLKWLRQQ 1120
DL+L + G+ ++G +G+GK+T++ ++ PD G + G ++ L + + R
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78
Query: 1121 MGLVSQEPVLFND-TIRAN--IAYGKG-----------GDATEAEIQAASEMANAHKFIC 1166
+G Q+P +F + T+ N +A + + I+ E
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIG------ 132
Query: 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL-DAESERVVQDAL 1225
L D + G LS GQKQ + I +++DPK+LLLDE + + D E+E+ + L
Sbjct: 133 -LADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA-ELL 186
Query: 1226 DRVMKNRTTVVVAH 1239
+ + VVV H
Sbjct: 187 KSLAGKHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 37/202 (18%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQLKWLRQQMGL 1123
I + + ++G +G GK+T + +L PD G I ++ + Q ++
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKAD-------- 73
Query: 1124 VSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQL 1183
+ T+R + D +E+A + ++Q D V E L
Sbjct: 74 -------YEGTVRD-LLSSITKDFYTHP-YFKTEIAKPLQ----IEQILDREVPE----L 116
Query: 1184 SGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN--RTTVVVAHRL 1241
SGG+ QRVAIA + KD I LLDE ++ LD E + + R +N +T VV H +
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176
Query: 1242 STIKNADMIAVVKNGVIVEKGK 1263
MI + + +IV +G+
Sbjct: 177 I------MIDYLADRLIVFEGE 192
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 38/241 (15%)
Query: 406 SISISSGTTAALVGQSGSGKS----TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
S S+ G +VG+SGSGKS ++ LI+ A ++ +G +L+ + R
Sbjct: 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86
Query: 462 IG----LVSQEPVLFTGSIKDNIAYGKDDATTEEIRV---ATELANAAKFIDKLPQGIDT 514
+G ++ Q+P+ S+ N Y E I+V + + ID L
Sbjct: 87 VGAEVAMIFQDPMT---SL--NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL-----N 136
Query: 515 LVG-----------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
VG H QLSGG QR+ IA AI P++L+ DE T+ALD + + E
Sbjct: 137 QVGIPDPASRLDVYPH--QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE 194
Query: 564 ALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-LI 619
L + N V++ H L+ V A I V++ G++VE G + P Y+Q L+
Sbjct: 195 LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALL 254
Query: 620 R 620
R
Sbjct: 255 R 255
|
Length = 326 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-12
Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 31/229 (13%)
Query: 1042 EIELHHVSFKYPSR-----PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+EL +V+F Y P +NL I+ G+ + L+G +GSGKST+ LL Y
Sbjct: 322 TLELRNVTFAYQDNGFSVGP-------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
P +G I LDG + Q + R+ V + LF+ + +G A A ++
Sbjct: 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLG-----PEGKPANPALVEKWL 429
Query: 1157 EMAN-AHKFICSLQQGYDTMVGER--GLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
E AHK + R L+LS GQK+R+A+ A+ ++ ILLLDE +
Sbjct: 430 ERLKMAHKL---------ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ 480
Query: 1214 DAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVE 1260
D R L +++ +T ++H +AD + ++NG + E
Sbjct: 481 DPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 4e-12
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 32/218 (14%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QW 457
S ++ +G + G G+G++ + + +GE+L+DG K ++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG---KPVRIRSPRDA 331
Query: 458 IRKKIGLVS----QEPVLFTGSIKDNIAYGKDDATTEE--IRVATELANAAKFIDKL--- 508
I+ I V E ++ SI +NI + I E A A ++I +L
Sbjct: 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK 391
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD--AESEKVVQEALD 566
+ +G LSGG +Q++ +AR + DP++L+LDE T +D A++E + +
Sbjct: 392 TPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE--IYRLIR 445
Query: 567 RIMVNRTTVIVAHRLST-----VRNADMIAVIHRGKIV 599
+ +++ +S+ + +D I V+ G+IV
Sbjct: 446 ELAAEGKAILM---ISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 38/223 (17%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVS----LLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
L+ ++RAG+ + LVG +G+GKST+++ LL P +G I G ++ L +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 1120 QMG-LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAA-SEMANAHKFICSLQQGYDTMVG 1177
L Q+ F + + + + +A +E+A A L V
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALG----LDDKLGRSVN 125
Query: 1178 ERGLQLSGGQKQRVAIA-------RAIVKDPKILLLDEATSALDAESERVVQD-ALDRVM 1229
QLSGG+ QRV +A I ++LLLDE ++LD V Q ALDR++
Sbjct: 126 ----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLL 176
Query: 1230 K-----NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHEN 1266
V+ +H L+ T+++AD + ++K G ++ G+ +
Sbjct: 177 SELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDE 219
|
Length = 248 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-12
Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 28/230 (12%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ +P V+ D++ RAG+ AL+GE+G+GKST++ +L Y PDAG I
Sbjct: 6 SFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 1104 LDGVEIQKLQLK-WLRQQMGLVSQEPVLFND-TIRANIAYG----KGG--DATEAEIQAA 1155
+DG E++ L + ++ QE L + T+ N+ G KGG + +A
Sbjct: 63 IDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAR 122
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
++ + + DT + LS GQ+Q V IA+A+ ++ +++ DE TS+L A
Sbjct: 123 EQLEH-----LGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1216 -ESE---RVVQDALDRVMKNRTTVVVAHRLSTI-KNADMIAVVKNGVIVE 1260
E E RV+++ + R + V+HR+ I D I V K+G V
Sbjct: 174 REIEQLFRVIRELRA---EGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
Length = 501 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-12
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
R +F L+ + AG+ + + G +GSGK+T++ +L P AG + L+G + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYD 1173
R + L + ++ N+ + + E +A + + L D
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV--------GLNGFED 120
Query: 1174 TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
V QLS GQ++RVA+AR ++ + +LDE T+ALD
Sbjct: 121 RPVA----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWIR 459
G S +I G +G +G+GK+T + ++ P +GEV + G+ K+F
Sbjct: 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF-----L 93
Query: 460 KKIGLVSQE--------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
++IG+V + PV+ + + I + + +EL + + +D +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR- 152
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
QLS GQ+ R IA A+L +P IL LDE T LD +++ ++ L
Sbjct: 153 ----------QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202
Query: 572 R-TTVIV-AHRLSTV-RNADMIAVIHRGKIVEKG 602
R TTV++ +H + + A + VI +G+++ G
Sbjct: 203 RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-12
Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 40/255 (15%)
Query: 408 SISSGTTAALVGQSGSGKS-TVISLIERFYDPQ--AGEVLIDG---INLKEFQLQWIR-K 460
S+ +G T +VG+SGSGKS T +L+ G +G +NL E +L +R +
Sbjct: 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAE 97
Query: 461 KIGLVSQEPVLFTG---SIKDNIA--------YGKDDATTEEIRV--ATELANAAKFIDK 507
+I ++ Q+P+ + + + K +A E +R+ A ++ A K +
Sbjct: 98 QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKM 157
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
P + SGG +QR+ IA A+L P++L+ DE T+ALD + + L+
Sbjct: 158 YPH-----------EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE 206
Query: 568 IM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-----LI 619
+ N +++ H L V D + V++ G+ +E G + P YS +
Sbjct: 207 LKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVP 266
Query: 620 RLQEANKESEQTIDG 634
RL +A ES TI G
Sbjct: 267 RL-DAEGESLLTIPG 280
|
Length = 330 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-12
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
R +FSG S ++++G L G +GSGK+T++ LI P AG + +DG +
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD----- 65
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAY-GKDDATTEEIRVATELANAAKFIDKLPQGID 513
+P + Y G +A + VA L A F+ I
Sbjct: 66 -----------IDDPDVAE-----ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIA 109
Query: 514 ---TLVGEHGTQ------LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
VG LS GQK+R+A+AR ++ + I +LDE T+ALDA + + E
Sbjct: 110 AALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 9e-12
Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 57/269 (21%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVL------------------- 444
S +I G ++G+SG+GKS ++ ++ Y+P +G ++
Sbjct: 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79
Query: 445 --------------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
+D NL + + IRK+I ++ Q YG D
Sbjct: 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL---------YGDDTVLDN 130
Query: 491 EIRVATELA-NAAKFIDKLPQGIDTLVGEH-----GTQLSGGQKQRIAIARAILKDPRIL 544
+ E+ + + + I+ + H LSGG+KQR+ +AR + K+P +
Sbjct: 131 VLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLF 190
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
L DE T LD ++ K+V AL+ + + V+ +H + + +D + G+I E+
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
GT ++V + + + E E E
Sbjct: 251 GTPDEVVA----VFMEGVSEVEKECEVEV 275
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 42/228 (18%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK-------LQLKW 1116
L+ ++RAG+ + LVG +G+GKST+++ + +G I G ++ +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMV 1176
L QQ PV T+ Q + D +
Sbjct: 77 LSQQQTPPFAMPVWHYLTLH----------------QPDKTRTELLNDVAGAL-ALDDKL 119
Query: 1177 GERGLQLSGGQKQRVAIARAIVK-------DPKILLLDEATSALDAESERVVQDALDRVM 1229
G QLSGG+ QRV +A +++ ++LLLDE ++LD Q ALDR++
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ----QSALDRLL 175
Query: 1230 -----KNRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIP 1271
+ V+ +H L+ T+++A ++K G ++ G+ E ++ P
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-12
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFS-----ISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
+ELR+V F+Y GFS ++I G L+G +GSGKST+ L+ Y P
Sbjct: 323 LELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
Q+GE+L+DG + Q + RK V + LF + G + V L
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL------GPEGKPANPALVEKWL 429
Query: 499 ANAAKFIDKLPQGIDTLVGEH--GTQLSGGQKQRIAIARAILKDPRILLLDE 548
K KL L +LS GQK+R+A+ A+ ++ ILLLDE
Sbjct: 430 ER-LKMAHKL-----ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464
S++++SG L+G +G+GK+T ++ AG ++ID ++ L R+ IG
Sbjct: 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
Query: 465 VSQEPVLFTG-SIKDNIAYG---KDDATTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH 519
+ QE +F S+ DN+ +DD + E+ A EL I+ L
Sbjct: 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH--------IEHLRDSM 134
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES----EKVVQEALDR---IMVN- 571
G LSGG+++R+ IARA+ +P+ +LLDE + +D S +++++ D +++
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITD 194
Query: 572 ---RTTVIVAHRLSTVRNADMIA 591
R T+ V R V +IA
Sbjct: 195 HNVRETLAVCERAYIVSQGHLIA 217
|
Length = 241 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 22/226 (9%)
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124
NL++R + V+L+G +G+GK+TV + L FY P G I L G I+ L +MG+V
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMGVV 83
Query: 1125 S--QEPVLFND-TIRANIAYGK----------GGDATEAEIQAASE-MANAHKFICSLQQ 1170
Q LF + T+ N+ + G T A +A SE + A + L++
Sbjct: 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW---LER 140
Query: 1171 -GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229
G + L+ GQ++R+ IAR +V P+IL+LDE + L+ + + + + + +
Sbjct: 141 VGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR 200
Query: 1230 K--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272
N T +++ H + + +D I VV G + G E + N PD
Sbjct: 201 NEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246
|
Length = 255 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 33/229 (14%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ-RFYDPDA-------GHITLDG---VE 1108
+ RDL+L+I G+ AL+G +G+GKST++ L A G +TL+G
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI--C 1166
I +L LR + +Q F + R + G+ A + A + + I
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAF--SAREIVLLGRYPHA-----RRAGALTHRDGEIAWQ 128
Query: 1167 SLQQ-GYDTMVGERGLQLSGGQKQRVAIARAIVK---------DPKILLLDEATSALDAE 1216
+L G +VG LSGG+ RV AR + + P+ LLLDE T+ALD
Sbjct: 129 ALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 1217 SERVVQDALDRVMK--NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKG 1262
+ + D + R+ + N + + H + ++AD IA++ +G IV G
Sbjct: 189 HQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 1e-11
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH-R 580
QLSGG+K R+A+A+ +L++P +LLLDE T+ LD ES + ++EAL T ++V+H R
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR 127
Query: 581 --LSTVRNADMIAVIHRGK 597
L V A I + GK
Sbjct: 128 YFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 28/212 (13%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
RD + + G ALVG +GSGKST+ L F +G I++ G ++ L++
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----LQKN 78
Query: 1121 M-GLVSQE-------PVLFNDTIRANIAYGKGG--DATEAEIQAASEMANAHKFICSLQQ 1170
+ V Q PVL D + YG G + + A A + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQIVTAALAR---VDMVE 134
Query: 1171 GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE-RVVQDALDRVM 1229
+GE LSGGQK+RV +ARAI + +++LLDE + +D ++E R++ +L R +
Sbjct: 135 FRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARII--SLLREL 188
Query: 1230 KN--RTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258
++ +T +V H L ++ D +VK V+
Sbjct: 189 RDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVL 220
|
Length = 272 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 14/221 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ VS Y +Q +++L I G+ V L+G +G+GK+T++ L +G I
Sbjct: 6 LSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 1103 TLDGVEIQKLQL-KWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMAN 1160
DG +I Q K +R+ + +V + +F+ T+ N+A G G A + Q +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG-GFFAERDQFQ--ERIKW 119
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
++ L + +R +SGG++Q +AI RA++ P++LLLDE + L +
Sbjct: 120 VYELFPRLHE----RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175
Query: 1221 VQDALDRVMKNRTTVVVAHRLS--TIKNADMIAVVKNGVIV 1259
+ D ++++ + T+ + + + +K AD V++NG +V
Sbjct: 176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 18/206 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
S + G L+G +G+GK+T +I +P GE+ +G L Q I+ +IG
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIG 75
Query: 464 LVSQEPVLFTG-SIKDNIAY--GKDDATTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH 519
+ +E L+ +++D + Y EI+ + + K + I L
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL---- 131
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA- 578
S G +Q+I A++ +P +L+LDE S LD + +++++A+ + T+I +
Sbjct: 132 ----SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS 187
Query: 579 HRLSTV-RNADMIAVIHRGKIVEKGT 603
HR+ V D + ++ +G+ V GT
Sbjct: 188 HRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-11
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 30/226 (13%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
P + S +G AL+G++G+GKST++ ++ Y P AG +LIDG +E +
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFA 71
Query: 457 WIRKK----IGLVSQE----PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508
+ ++ QE P + ++ +N+ G+ + A + ++ L
Sbjct: 72 STTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL 128
Query: 509 PQGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESE---KVVQ 562
ID T + LS GQ+Q + IA+A+ ++ R++ DE TS+L A E E +V++
Sbjct: 129 GVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIR 184
Query: 563 EALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKL 607
E R + V+HR+ + D I V G+ V T +
Sbjct: 185 ELRAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 45/227 (19%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466
+S G L+G +G+GK+T++ I P G V + G + + + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 467 QE-------PVLFTGSIKDNIA--------YGKDDATTEEIRVATELANAAKFIDKLPQG 511
Q P+ ++ D +R A + D+ P G
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGLTELADR-PVG 112
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
+LSGGQ+QR+ +ARA+ P +LLLDE + LD +++++ E +
Sbjct: 113 ----------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162
Query: 572 RTTVI-VAHRLSTVRNADMIAVIHR-----GKIVEKGTHSKLVEDPE 612
T ++ H L A +A R G+++ GT +L +DP
Sbjct: 163 GTAILMTTHDL-----AQAMATCDRVVLLNGRVIADGTPQQL-QDPA 203
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 8e-11
Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLI----ERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
S++++ G LVG+SGSGKS + I + + A + D I+L + RK
Sbjct: 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKL 86
Query: 462 IG----LVSQEP---VLFTGSIKDNIAYGKDDATTE---------EIRVATELANAAKFI 505
+G ++ QEP + + + + T + R A EL +
Sbjct: 87 VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIK 146
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D + +L+ G+ Q++ IA A+ PR+L+ DE T+A++ ++ + L
Sbjct: 147 DH-----KDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLL 201
Query: 566 DRIMVNRTTVI--VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-LIR 620
R+ N T I ++H L + AD I V++ G+ VE +LV P Y+Q LIR
Sbjct: 202 TRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQL 455
+I G ++SI+ G A++G +GSGKST+ +I Y G++L G ++ + +
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 456 QWIRKKIG--LVSQEPVLFTG-SIKD--NIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ R +G L Q P+ G S D +AY + + + EL + +F++ + +
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYN----SKRKFQGLPEL-DPLEFLEIINE 132
Query: 511 GIDTLVGEHGTQL--------SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ LVG + L SGG+K+R I + L D + +LDE S LD ++ K++
Sbjct: 133 KLK-LVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191
Query: 563 EALDRIM-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGT 603
E ++++M + +++ H RL D + V+ GKI++ G
Sbjct: 192 EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 34/212 (16%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTA-----ALVGQSGSGKSTVISLIERFYDPQAG 441
RD YP F + + G ++G +G GK+T + L+ P G
Sbjct: 339 RDTLVEYPDLKKTY--GDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
++ K Q+I + G+++D + + TE+
Sbjct: 397 SEEDLKVSYKP---QYISPD----------YDGTVEDLL-RSAIRSAFGSSYFKTEIVK- 441
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
P ++ L+ +LSGG+ QR+AIA A+ ++ + LLDE ++ LD E +V
Sbjct: 442 -------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 562 QEALDRIMVNR--TTVIVAHRLSTVRNADMIA 591
+ + R + N T ++V H + D ++
Sbjct: 495 AKVIRRFIENNEKTALVVDHDIYM---IDYVS 523
|
Length = 591 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 65/240 (27%), Positives = 99/240 (41%), Gaps = 42/240 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVI-SLIERFYDPQA-------GEVLID 446
AR + I S+ I G AL+G++G+GKST++ +L A G+V ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 447 GINLKEFQ-LQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIR----VA 495
G L + R + L F S ++ + G + A T A
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA 129
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK---------DPRILLL 546
LA A LVG T LSGG+ R+ AR + + PR LLL
Sbjct: 130 LALAGA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178
Query: 547 DEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
DE T+ALD + + + + R+ N + + H + R+AD IA++ G IV G
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 2e-10
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 7/78 (8%)
Query: 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAH-R 1240
QLSGG+K R+A+A+ ++++P +LLLDE T+ LD ES +++AL T ++V+H R
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127
Query: 1241 --LSTIKNADMIAVVKNG 1256
L + A I +++G
Sbjct: 128 YFLDQV--ATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVS 1125
L G+ + L+G +G+GK+T++ + P G + + G K + +G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 1126 QEPVLFND---TIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYD 1173
Q D ++ + G+ G A A ++ A L + D
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-------LTELAD 108
Query: 1174 TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRT 1233
VGE LSGGQ+QRV +ARA+ P +LLLDE + LD ++ ++ + + T
Sbjct: 109 RPVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164
Query: 1234 TVV-VAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
++ H L+ V+ NG ++ G + L +
Sbjct: 165 AILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 21/214 (9%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KL 1112
S P V+ ++NLK+R AL+GE+G+GKST++ L Y D+G I G EI K
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 1113 QLKWLRQQMGLVSQEPVLFND-TIRANIAYG----KGGDATEAEIQAASEMANAHKFICS 1167
+ L + +V QE L ++ N+ G KG + +M K I
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQ------DKMYRDTKAIFD 120
Query: 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD- 1226
+ D + LS Q Q + IA+A + KI+++DE TS+L +E+ V
Sbjct: 121 -ELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEVNHLFTI 176
Query: 1227 -RVMKNR--TTVVVAHRLSTI-KNADMIAVVKNG 1256
R +K R V ++H++ I + D I ++++G
Sbjct: 177 IRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 17/237 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLKEFQLQ- 456
I G ++ + G A++G +GSGKST+ + + Y+ G V G +L E +
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA--NAAKFID------KL 508
+ I + Q PV G + + R L + ++ K+
Sbjct: 75 RAGEGIFMAFQYPVEIPG-VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
P+ D L SGG+K+R I + + +P + +LDE+ S LD ++ K+V + ++ +
Sbjct: 134 PE--DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191
Query: 569 M-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
R+ +IV H R+ D + V+++G+IV+ G + + + E Y L Q
Sbjct: 192 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248
|
Length = 248 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 2e-10
Identities = 58/202 (28%), Positives = 89/202 (44%), Gaps = 62/202 (30%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
P +QI S+S G ++G +G+GKST++ ++ AG +D KEF+ +
Sbjct: 18 PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD----KEFEGE 63
Query: 457 -WIRK--KIGLVSQEPVL---FT---------GSIKD--------NIAYGKDDATTEEIR 493
K+G + QEP L T +K AY + DA + +
Sbjct: 64 ARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDAL- 122
Query: 494 VATELANAAKFID------------------KLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
A E + ID + P D V T+LSGG+++R+A+ R
Sbjct: 123 -AAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKV----TKLSGGERRRVALCR 176
Query: 536 AILKDPRILLLDEATSALDAES 557
+L+ P +LLLDE T+ LDAES
Sbjct: 177 LLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 15/219 (6%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVI----SLIERFYDPQAGEVLIDGINLKEFQL 455
Q ++I G AL+G SGSGKST++ LI + L+ +E +L
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 456 QW-IRK---KIGLVSQEPVLFTG-SIKDNIAYGKDDATT---EEIRVATELANAAKFIDK 507
IRK G + Q+ L S+ +N+ G +T T
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
G+ + + LSGGQ+QR+AIARA+++ +++L DE ++LD ES ++V + L
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 568 IMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
I N T V+ H++ +R + I + +G + G+
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 51/198 (25%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLL-QRFYDPDAGHIT----LDGVEIQKLQLKWLRQQMG 1122
++ G AL+GESG+GK+T++ +L R AG IT ++G + K ++ G
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGR---KTAGVITGEILINGRPLDKN----FQRSTG 82
Query: 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGL 1181
V Q+ V N T+R + +F L RGL
Sbjct: 83 YVEQQDVHSPNLTVREAL-----------------------RFSALL----------RGL 109
Query: 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV-MKNRTTVVVAHR 1240
+ Q++R+ I + P IL LDE TS LD+++ + L ++ + + H+
Sbjct: 110 SVE--QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ 167
Query: 1241 LS--TIKNADMIAVVKNG 1256
S + D + ++K G
Sbjct: 168 PSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-10
Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 51/242 (21%)
Query: 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSG 424
PE D + + + I L + SY RP I S ++ G +VG +G+G
Sbjct: 243 PEPDEPSARHALPANE-PRIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAG 298
Query: 425 KSTVISLIERFYDPQA--------------GEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
KST++SLI + PQ GE + D I+K IG VS
Sbjct: 299 KSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWD-----------IKKHIGYVSSSLH 346
Query: 471 L---FTGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521
L + S+++ I G D A ++ + A +++D L GID +
Sbjct: 347 LDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL-----AQQWLDIL--GIDKRTADAPF 399
Query: 522 Q-LSGGQKQRIA-IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT--VIV 577
LS GQ QR+A I RA++K P +L+LDE LD + ++V+ +D ++ T + V
Sbjct: 400 HSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV 458
Query: 578 AH 579
+H
Sbjct: 459 SH 460
|
Length = 490 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 55/209 (26%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
++ VS P P ++ +D++L G + ++G +G+GKST++ ++
Sbjct: 7 MNRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA------------ 52
Query: 1105 DGVEIQKLQLKWLRQ--QMGLVSQEPVLFND-TIRANI-------------------AYG 1142
GV+ + ++G + QEP L T+R N+ +
Sbjct: 53 -GVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111
Query: 1143 KGGD------ATEAEIQAASEMANAHKFICSLQQG--------YDTMVGERGLQLSGGQK 1188
+ A +AE+Q + A+A L+ +D V + LSGG++
Sbjct: 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK----LSGGER 167
Query: 1189 QRVAIARAIVKDPKILLLDEATSALDAES 1217
+RVA+ R ++ P +LLLDE T+ LDAES
Sbjct: 168 RRVALCRLLLSKPDMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK----EF--Q 454
+FSG S ++++G + G +G+GK++++ ++ P AGEVL G ++ E+
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 455 LQWIRKKIG----LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
L ++ + G L + E + F + E + A A F D +P
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHG-------PGDDEALWEALAQVGLAGFED-VPV 127
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
QLS GQ++R+A+AR L + +LDE +A+D + ++ L +
Sbjct: 128 R----------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLI----ERFYDPQAGEVLIDGINLKEFQL 455
+ S++++ G LVG+SGSGKS + I + + A + D I+L
Sbjct: 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80
Query: 456 QWIRKKIG----LVSQEPV--------------------LFTGSIKDNIAYGKDDATTEE 491
+ RK +G ++ QEP + G + K
Sbjct: 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRK------- 133
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
R A EL + D ++ + +L+ G+ Q++ IA A+ PR+L+ DE T+
Sbjct: 134 -RRAIELLHRVGIKDH-----KDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187
Query: 552 ALDAESEKVVQEALDRIMVNRTTVI--VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+++ ++ + L R+ N T I ++H L + AD I V++ G+ VE +LV
Sbjct: 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247
Query: 609 EDPEGAYSQ-LIR 620
P Y+Q LIR
Sbjct: 248 TMPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 50/203 (24%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L +V S+ R ++ S S+ + G L+G +G+GKST++ ++ P G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+G + ++ ++ +K+ L + P+ ++ K+D I A + A
Sbjct: 62 KRNG----KLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED-----ILPALKRVQAGH 112
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
ID Q +LSGG+ QR+ +ARA+L P++L+LDE T +D + + +
Sbjct: 113 LIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161
Query: 564 ALDRIM--VNRTTVIVAHRLSTV 584
+D++ ++ ++V+H L V
Sbjct: 162 LIDQLRRELDCAVLMVSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 7e-10
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 28/224 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWIR- 459
G + + G L G++G+GKST++ ++ Y P GE+ G + IR
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSG---SPLKASNIRD 74
Query: 460 ---KKIGLVSQEPVLFTG-SIKDNIAYGKD-------DATTEEIRVATELANAAKFIDKL 508
I ++ QE L S+ +NI G + A A L + +D
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ-LDAD 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDR 567
+ VG++G GGQ+Q + IA+A+ K R+L+LDE +S+L + E+E ++ D
Sbjct: 134 N--VTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 568 IMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
V ++H+L+ V+ D I VI G+ V S + ED
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS--QEPVLFT 473
+L+G +G+GK+TV + + FY P G +L+ G +++ I + G+V Q LF
Sbjct: 35 SLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-GVVRTFQHVRLFR 93
Query: 474 G-------------SIKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+K + G K A A L AA +++++ G+
Sbjct: 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANR 149
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD--RIMVNRTTVI 576
L+ GQ++R+ IAR ++ P IL+LDE + L+ + K + E + R N T ++
Sbjct: 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLL 209
Query: 577 VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ H + V +D I V+++G + GT ++ +P+
Sbjct: 210 IEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246
|
Length = 255 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 7e-10
Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 24/249 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK-IGL 464
S ++ G+ AALVG +GSGKST+ + F +G++ I G + Q ++K +
Sbjct: 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKNLVAY 82
Query: 465 VSQE-------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG 517
V Q PVL ++D + G+ +R A + + +D +
Sbjct: 83 VPQSEEVDWSFPVL----VEDVVMMGRY-GHMGWLRRAK--KRDRQIVTAALARVDMVEF 135
Query: 518 EHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTT 574
H +LSGGQK+R+ +ARAI + +++LLDE + +D ++E + L + +T
Sbjct: 136 RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTM 195
Query: 575 VIVAHRLSTVRNADMIAVIHRGKIVEKG-THSKLV-EDPEGAYSQLIRLQEANKESEQTI 632
++ H L +V V+ +G ++ G T + E+ E A+S ++R N E I
Sbjct: 196 LVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAENLELAFSGVLRHVALNGSEESII 255
Query: 633 DGQRKSEIS 641
+ IS
Sbjct: 256 TDDERPFIS 264
|
Length = 272 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 25/236 (10%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDA 1099
EI+ H S + ++ + LNL I G+ A++G +GSGKST+ ++ Y
Sbjct: 9 EIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE 63
Query: 1100 GHITLDGVEIQKLQLKWLRQQMG--LVSQEPVLFN-----DTIRANIAYG---KGGDATE 1149
G I G I L+ + R +G L Q P+ D +R +AY K E
Sbjct: 64 GDILFKGESILDLEPE-ERAHLGIFLAFQYPIEIPGVSNADFLR--LAYNSKRKFQGLPE 120
Query: 1150 AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
+ E+ N + + + + G SGG+K+R I + + D ++ +LDE
Sbjct: 121 LDPLEFLEIINEKLKLVGMDPSFLSRNVNEGF--SGGEKKRNEILQMALLDSELAILDET 178
Query: 1210 TSALDAESERVVQDALDRVM-KNRTTVVVAH--RLSTIKNADMIAVVKNGVIVEKG 1262
S LD ++ +++ + ++++M + +++ H RL D + V++NG I++ G
Sbjct: 179 DSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234
|
Length = 252 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 8e-10
Identities = 57/218 (26%), Positives = 112/218 (51%), Gaps = 20/218 (9%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQW 457
Q S+ I+ G L+G +G+GK+T++ + DP+A G ++ DG ++ ++Q
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL--CGDPRATSGRIVFDGKDITDWQTAK 76
Query: 458 I-RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
I R+ + +V + +F+ ++++N+A G A ++ + + + P+ +
Sbjct: 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHERR 131
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--- 572
+ GT +SGG++Q +AI RA++ PR+LLLDE + L + ++Q+ D I R
Sbjct: 132 IQRAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQG 187
Query: 573 -TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
T +V + ++ AD V+ G +V + T L+
Sbjct: 188 MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225
|
Length = 237 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 8e-10
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 42/206 (20%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQLKWLRQQMGL 1123
I G+ + +VG +G GK+T LL PD G + + ++I Q ++ G
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIK----PDYDGT 416
Query: 1124 VSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQL 1183
V +L + T +Y K +EI L++ D V + L
Sbjct: 417 VED--LLRSITDDLGSSYYK------SEI--------IKPL--QLERLLDKNVKD----L 454
Query: 1184 SGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRL 1241
SGG+ QRVAIA + +D + LLDE ++ LD E V A+ R+ + R T +VV H +
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514
Query: 1242 STIKNADMIAVVKNGVIV---EKGKH 1264
I D I+ + ++V E GKH
Sbjct: 515 YMI---DYIS---DRLMVFEGEPGKH 534
|
Length = 590 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
R + S + +G + G +G+G+S ++ I P +G +L++G ++
Sbjct: 266 KDRRGVTAV-KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 453 FQ--LQWIRKKIGLVSQEP-----VLFTGSIKDNIA----YGKDDATTEEIRVATELANA 501
+ R + V ++ VL S+ +N+ K + + A
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA 383
Query: 502 AKFIDKL---PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ I++ D LSGG +Q++ +AR + + P +L+ + T LD +
Sbjct: 384 RELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAI 439
Query: 559 KVVQEALDRIMVNRTTVIVAHRLST-----VRNADMIAVIHRGKIV 599
+ + E L + V++ +S + +D IAVI+ G+IV
Sbjct: 440 EFIHERLLELRDAGKAVLL---ISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
H ++F SR + VF L+ + AG+ + + G++G+GK+T++ +L ++G I +D
Sbjct: 15 HALAF---SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71
Query: 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
G + + M + P L D + N+ + G A+ S +A
Sbjct: 72 GKTATRGDRS---RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALA----- 123
Query: 1165 ICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
I L DT+V QLS GQK+R+A+AR + + LLDE + LD E
Sbjct: 124 IVGLAGYEDTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 40/191 (20%)
Query: 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST----VVSLLQRFYDPDAGHITL 1104
R + + +D + ++ G+ V ++G GSG ST + + + + G I
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE-GDIHY 69
Query: 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
+G+ ++ F + I Y D + + F
Sbjct: 70 NGIPYKE-------------------FAEKYPGEIIYVSEEDVHFPTLTVRETL----DF 106
Query: 1165 ICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDA 1224
+ + V RG+ SGG+++RV+IA A+V +L D +T LD+ + A
Sbjct: 107 ALRCKG--NEFV--RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------A 154
Query: 1225 LDRVMKNRTTV 1235
L+ + RT
Sbjct: 155 LEILKCIRTMA 165
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 24/226 (10%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG-VEIQKLQLKWLRQQ 1120
DL+ + G+ L+G +G+GK+T++ ++ P G + DG ++ KL + +
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP-EHRIAR 80
Query: 1121 MGLVS--QEPVLFND-TIRANIAYGKGGD----------ATEAEIQAASEMANAHKFICS 1167
G+ Q+P +F + T+R N+ D E + E+
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLA----TIG 136
Query: 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDR 1227
L D + LS GQKQ + I + +DPK+LLLDE + + + L
Sbjct: 137 LGDERDRLAAL----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 1228 VMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272
+ + +VV H + ++ AD + V+ G ++ +G + + N P
Sbjct: 193 LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK 238
|
Length = 249 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-09
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 43/216 (19%)
Query: 403 SGFSI----SISSGTTAALVGQSGSGKSTVIS-----LIERFYDPQAGEVLIDGINLKEF 453
+GF + G ++G +G GK+T + LI D + E D + LK F
Sbjct: 86 NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE-EEPSWDEV-LKRF 143
Query: 454 ---QLQ-WIRK----------KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
+LQ + +K K V P +F G +++ + +E E+
Sbjct: 144 RGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLK------KVDERGKLDEV- 196
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+++L G++ ++ ++LSGG+ QR+AIA A+L+D DE TS LD
Sbjct: 197 -----VERL--GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRL 249
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIA-VIH 594
V + + + ++V H L+ + D +A +H
Sbjct: 250 NVARLIRELAEGKYVLVVEHDLAVL---DYLADNVH 282
|
Length = 590 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 1032 SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
G + G I+ ++ P+ DV + L+ ++ +G + + G +G GKS++ +L
Sbjct: 442 RGIVEYQDNG-IKFENIPLVTPNG-DVLI-ESLSFEVPSGNNLLICGPNGCGKSSLFRIL 498
Query: 1092 QRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG------KGG 1145
+ G +T + ++ V Q P + T+R I Y K
Sbjct: 499 GELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRR 547
Query: 1146 DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILL 1205
++ +++ + I + G+ + + LSGG+KQR+A+AR P+ +
Sbjct: 548 GLSDKDLEQILDNVQLT-HILEREGGWSAVQDWMDV-LSGGEKQRIAMARLFYHKPQFAI 605
Query: 1206 LDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIK 1245
LDE TSA+ + V+ + R+ + T V+HR S K
Sbjct: 606 LDECTSAVSVD----VEGYMYRLCREFGITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 4e-09
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 26/171 (15%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFYDPQ-AGEVLIDGINLKEFQLQWI 458
I +G + S G A++G SGSGKST+++ + R G +L + + I
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI 138
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAY----------GKDDATTEEIRVATELANAAKFIDK 507
K+ G V+Q+ +L+ ++++ + + K + V +EL
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------- 190
Query: 508 LPQGIDTLVGEHGTQ-LSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L + +T++G + +SGG+++R++IA +L +P +L+LDE TS LDA +
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241
|
Length = 659 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 5e-09
Identities = 43/198 (21%), Positives = 65/198 (32%), Gaps = 60/198 (30%)
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGINLKEFQLQWIRKKIGLVSQEP 469
G +VG GSGK+T+ + R P G V+ IDG ++ E L + I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII------- 53
Query: 470 VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
VG SG +
Sbjct: 54 ----------------------------------------------VGGKKASGSGELRL 67
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV------NRTTVIVAHRLST 583
R+A+A A P +L+LDE TS LDAE E ++ + ++ TVI+
Sbjct: 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
Query: 584 VRNADMIAVIHRGKIVEK 601
++ +IV
Sbjct: 128 DLGPALLRRRFDRRIVLL 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 9e-09
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERF--------YDPQAGEVLIDGINLKEFQLQWI 458
+ I G A+VGQSG+GK+T++ +I Y P +G+V + + + +
Sbjct: 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV-----EVPKNTVSAL 458
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
EP +I +++ + T ++ A E+ N A D L
Sbjct: 459 IPG----EYEPEFGEVTILEHLR-----SKTGDLNAAVEILNRAGLSDA------VLYRR 503
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT-TVIV 577
++LS GQK+R +A+ + + P +LL+DE + LD + V + + T+IV
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 578 AHRLSTVRNA---DMIAVIHRGKIVE 600
V NA D + ++ GK+
Sbjct: 564 VTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 9e-09
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 36/213 (16%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAA-----LVGQSGSGKSTVISLIERFYDPQAG 441
R+ YP + FS+ + G +VG +G GK+T L+ P G
Sbjct: 337 RETLVEYPDL--TKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
Query: 442 EVLIDGINLK-EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
EV + LK ++ Q+I+ + G+++D + DD + + +E+
Sbjct: 395 EVDPE---LKISYKPQYIKPD----------YDGTVEDLLRSITDDLGSSYYK--SEIIK 439
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
P ++ L+ ++ LSGG+ QR+AIA + +D + LLDE ++ LD E
Sbjct: 440 --------PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA 491
Query: 561 VQEALDRIMVNR--TTVIVAHRLSTVRNADMIA 591
V +A+ RI R T ++V H + + D I+
Sbjct: 492 VAKAIRRIAEEREATALVVDHDIYMI---DYIS 521
|
Length = 590 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-----K 451
P + SG ++++ G ALVG++G+GKST++ ++ Y AG +L G + K
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT-EEIRVATELANAAKFIDKL- 508
Q IG++ QE L +I +NI G++ I A A K + +L
Sbjct: 75 SSQEA----GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLN 130
Query: 509 -PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESE---KVVQE 563
D LVGE LS G++Q + IA+ + + +++++DE T AL D E+E +V++E
Sbjct: 131 LRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186
Query: 564 ALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ R V ++HRL + D + V G+ + + + L ED LI +
Sbjct: 187 LKSQ---GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED------SLIEMM 237
Query: 623 EANKESEQ 630
K +Q
Sbjct: 238 VGRKLEDQ 245
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-08
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 57/210 (27%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSL---LQRFYDPDAGH 1101
++ VS P P Q+ +D++L G + ++G +G+GKST++ + + + ++ +A
Sbjct: 9 MNRVSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-- 64
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI-------------------AY 1141
G+++ G + QEP L + T+R N+ AY
Sbjct: 65 RPAPGIKV------------GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAY 112
Query: 1142 GKGGDATE------AEIQAASEMANAHKFICSLQQG--------YDTMVGERGLQLSGGQ 1187
+ + E+Q + A+A L+ +D V +LSGG+
Sbjct: 113 AEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT----KLSGGE 168
Query: 1188 KQRVAIARAIVKDPKILLLDEATSALDAES 1217
++RVA+ R +++ P +LLLDE T+ LDAES
Sbjct: 169 RRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 56/209 (26%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTV---------ISLIERFYDPQAGEVLIDGINL 450
Q+ + S + GT AL+G+SG+GK+T+ +I GE+LI+G L
Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-------GEILINGRPL 73
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ ++ G V Q+ V +R A +
Sbjct: 74 DKN----FQRSTGYVEQQDVHSPNL---------------TVREALRFSAL--------- 105
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-M 569
L G LS Q++R+ I + P IL LDE TS LD+++ + L ++
Sbjct: 106 ----LRG-----LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156
Query: 570 VNRTTVIVAHRLSTV--RNADMIAVIHRG 596
+ + H+ S D + ++ RG
Sbjct: 157 SGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 23/207 (11%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
+ F Y +P + + ++ + AG + L G +G+GK+T++ L+ +P+ G I +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 1107 VEIQKLQLKWLRQQMGLVSQEP-VLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
I+K L ++Q+ V + T+R N Y I +E+ +
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGI---TELCR----L 114
Query: 1166 CSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDAL 1225
SL+ D G LS GQK++VA+ R + K+ LLDE ALD E + +
Sbjct: 115 FSLEHLIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTII 167
Query: 1226 DRVMKNR----TTVVVAHRLSTIKNAD 1248
++ ++R ++ +H+ + AD
Sbjct: 168 TKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 41/209 (19%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINLKEF---QLQ 456
I +++ G+ L+G++G+GKST+I L+ P +GE+ L GI L F QL+
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386
Query: 457 WIRKKIG----LVSQEPVLFTGSIKDNI-AYG-KDDATTEEIRVATELANAAKFIDKLPQ 510
++R L P ++D + +G + D TEE R
Sbjct: 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETR----------------- 429
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ SGG+K R+ +A + + P +LLLDE T+ LD + + + EAL I
Sbjct: 430 -----------RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDF 476
Query: 571 NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
V+V+H +R+ D + ++H GK+
Sbjct: 477 EGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 63/241 (26%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVV------SLLQRFY----DPDAGHITLDGVEIQK 1111
+++++ I G + G SGSGKS+++ +L +R + P H ++G+E
Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGN-HDRIEGLE--- 67
Query: 1112 LQLKWLRQQMGLVSQEPV-------------LFNDTIRA----------------NIAY- 1141
+ + + Q P+ +F D IR + Y
Sbjct: 68 -HIDKVIV----IDQSPIGRTPRSNPATYTGVF-DEIRELFCEVCKGKRYNRETLEVRYK 121
Query: 1142 GKG-GDATEAEIQAASEMANAH-------KFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193
GK D + ++ A E + +C + GY + G+ LSGG+ QR+ +
Sbjct: 122 GKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKL-GQPATTLSGGEAQRIKL 180
Query: 1194 ARAIVK---DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVA-HRLSTIKNADM 1249
A+ + K + +LDE T+ L + + + L R++ TVVV H L IK AD
Sbjct: 181 AKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADW 240
Query: 1250 I 1250
I
Sbjct: 241 I 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 31/221 (14%)
Query: 372 TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431
+G + G I+ ++ P + + S + SG + G +G GKS++ +
Sbjct: 441 GRGIVEYQDNG-IKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRI 497
Query: 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY--------- 482
+ + G + + K+ V Q P + G+++D I Y
Sbjct: 498 LGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKR 546
Query: 483 -GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
G D E+I +L + I + G V + LSGG+KQRIA+AR P
Sbjct: 547 RGLSDKDLEQILDNVQLTH----ILEREGGWSA-VQDWMDVLSGGEKQRIAMARLFYHKP 601
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
+ +LDE TSA+ + E + T V+HR S
Sbjct: 602 QFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-08
Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 24/186 (12%)
Query: 1071 GKTVALVGESGSGKSTVVSLLQ-RFYDPD-AGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
G+ +A++G SGSGKST+++ L R + G I + + K LK + G V+Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDD 149
Query: 1129 VLF-NDTIRANIAY------GKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGE--- 1178
+L+ + T+R + + K E + A S ++ L + +T++G
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISE-----LGLTKCENTIIGNSFI 204
Query: 1179 RGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE-RVVQDALDRVMKNRTTVVV 1237
RG+ SGG+++RV+IA ++ +P +L+LDE TS LDA + R+V K +T V
Sbjct: 205 RGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262
Query: 1238 AHRLST 1243
H+ S+
Sbjct: 263 MHQPSS 268
|
Length = 659 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 38/197 (19%)
Query: 391 FSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450
F Y +P + S + +G L G +G+GK+T++ LI +P+ GE+L + ++
Sbjct: 9 FDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 451 K------EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE-EIRVATELANAAK 503
K + QL ++ + G+ P L ++++N Y + I L +
Sbjct: 66 KKDLCTYQKQLCFVGHRSGI---NPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEH 119
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
ID P G+ LS GQK+++A+ R + ++ LLDE ALD +
Sbjct: 120 LID-YPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD-------EL 161
Query: 564 ALDRIMVNRTTVIVAHR 580
+L I+ T I HR
Sbjct: 162 SLLTII----TKIQEHR 174
|
Length = 200 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 29/211 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ LH + F + +F DL++ + G +G GKS+++ ++ P +G+I
Sbjct: 2 LSLHQLQFNIEQK---NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57
Query: 1103 TLDGVEIQKLQ---LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMA 1159
I + ++ +GL + V N + I ++ E + AA
Sbjct: 58 YYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----NSAET-LYAA---- 107
Query: 1160 NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
H F ++ E+ LS G ++ VAIAR I + LLDE + L E+
Sbjct: 108 -IHYF------KLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD 160
Query: 1220 VVQDALDRVMKNRTTVVV---AHRLSTIKNA 1247
++ + + VMK + +V +H S+IK+A
Sbjct: 161 LLNNLI--VMKANSGGIVLLSSHLESSIKSA 189
|
Length = 195 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-08
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 48/194 (24%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I SF YP P +F++LN I +A+VG +G GKST++ L+ P +G +
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 1103 TLDGVEIQKLQLKWLRQQM--GL-VSQEPVLF---------NDTIRANI-AYGKGGDATE 1149
K+++ Q GL +S P+L+ +RA++ ++G G+
Sbjct: 567 ----FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN--- 619
Query: 1150 AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
+LQ Y LSGGQK RVA A+ K P ILLLDE
Sbjct: 620 ----------------LALQPMY---------TLSGGQKSRVAFAKITFKKPHILLLDEP 654
Query: 1210 TSALDAES-ERVVQ 1222
++ LD ++ E ++Q
Sbjct: 655 SNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 53/233 (22%), Positives = 108/233 (46%), Gaps = 27/233 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGE 442
+E R++ P+ + S S+ G + G G+G++ ++ + Y + G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQE-------PVLFTGSIKDNIAYGKDDATTEEIR 493
V I+G ++++ Q IR I +V ++ P+L G NI + ++R
Sbjct: 318 VFINGKPVDIRNPA-QAIRAGIAMVPEDRKRHGIVPILGVGK---NITLSVLKSFCFKMR 373
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHG------TQLSGGQKQRIAIARAILKDPRILLLD 547
+ +AA + + I L + +LSGG +Q+ +A+ +L +PR+L+LD
Sbjct: 374 I-----DAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD 428
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRN-ADMIAVIHRGKI 598
E T +D ++ + + ++++ +IV + L+ V +D + VI GK+
Sbjct: 429 EPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 4e-08
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL ++S Y + + +D++L I G + LVG +G+GKST++ L+ +PD G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1103 TLD 1105
T
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-08
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 41/173 (23%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127
I G+ V LVG++G GKST+++LL+ D G T G QL W+ Q+ + Q
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAWVNQETPALPQ- 78
Query: 1128 PVLFNDTIRANIAYGKGGD----ATEAEIQAASEMANAHKFICSLQQGYDTM-------- 1175
+ Y GD EA++ A+E + H I ++ D +
Sbjct: 79 ---------PALEYVIDGDREYRQLEAQLHDANERNDGHA-IATIHGKLDAIDAWTIRSR 128
Query: 1176 -------VGERGLQL-------SGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+G QL SGG + R+ +A+A++ +LLLDE T+ LD
Sbjct: 129 AASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 27/236 (11%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKS----TVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
V+ +++ + G+ LVGESGSGKS + + + + A + D +++ +L
Sbjct: 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79
Query: 1114 LKWLRQQMG----LVSQEPVLFNDTIRA-------NIAY----GKGGDATEAEIQAASEM 1158
+ R+ +G ++ QEP D NI G+ + A E+
Sbjct: 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIEL 139
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
H+ ++ D M +L+ G+ Q+V IA A+ P++L+ DE T++++ ++
Sbjct: 140 L--HR--VGIKDHKDIM-RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ 194
Query: 1219 RVVQDALDRVMKNRTTVV--VAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271
+ L R+ +N T + ++H L I AD I V+ G VE E L+ +P
Sbjct: 195 AQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMP 250
|
Length = 330 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 6e-08
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV-VQDALDRVMKNRTTVVVAHR 1240
+LSGG+ QRVAIA A+++D DE TS LD +R+ V + + + + +VV H
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QRLNVARLIRELAEGKYVLVVEHD 270
Query: 1241 LSTIKNADMIA 1251
L+ + D +A
Sbjct: 271 LAVL---DYLA 278
|
Length = 590 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-08
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 45/217 (20%)
Query: 402 FSGFSISI-SSGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGINLKE 452
F + + G ++G +G GKST + ++ R+ DP + + +I E
Sbjct: 89 FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTE 148
Query: 453 FQLQWIRK----------KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
Q + +K K V P + G + E ++ E
Sbjct: 149 LQ-NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVG------------ELLKKVDERGKFD 195
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE---- 558
+ +++L G++ ++ ++LSGG+ QR+AIA A+L+D + DE +S LD
Sbjct: 196 EVVERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA-VIH 594
+V++E + + ++V H L+ + D ++ +H
Sbjct: 254 RVIRELAED---GKYVIVVEHDLAVL---DYLSDFVH 284
|
Length = 591 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-08
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 33/191 (17%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE ++S + + + DL+ K+ G V ++G +G+GKST+ ++ PD+G I
Sbjct: 323 IEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 1103 TL-DGVEIQKLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYG----KGGDATEAEIQAA 1155
+ + V ++ V Q + + N T+ I+ G + G E+ +
Sbjct: 380 KIGETV------------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR---EVPSR 424
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+ + F S QQ VG QLSGG++ RV +A+ + +LLLDE T+ LD
Sbjct: 425 AYVG-RFNFKGSDQQ---KKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476
Query: 1216 ESERVVQDALD 1226
E+ R +++AL
Sbjct: 477 ETLRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-08
Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 25/214 (11%)
Query: 1065 NLKIRAGKTVALVGESGSGKSTV-------VSLLQRFYDPDAGHITLDGVE-IQKL-QLK 1115
+L + AG + A VG +GSGKS + + LL HIT E +QKL +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82
Query: 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
W R ++S +DT R T AEI A + Q G +
Sbjct: 83 WQRNNTDMLSPGE---DDTGR-----------TTAEIIQDEVKDPARCEQLAQQFGITAL 128
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTV 1235
+ R LS G+ ++ + +A++ +P +L+LDE LD S + + + L + ++ T+
Sbjct: 129 LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITL 188
Query: 1236 V-VAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267
V V +R I + V+ + + E G+ E +
Sbjct: 189 VLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222
|
Length = 490 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 49/180 (27%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ------- 1113
FR+++L++RAG+ + L G G+G++ + L G I L+G EI L
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338
Query: 1114 -LKWL---RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ 1169
L +L RQ GL P+ +N + N F ++
Sbjct: 339 GLVYLPEDRQSSGLYLDAPLAWN---------------------VCALTHNRRGFW--IK 375
Query: 1170 QGYDTMVGER-----GLQ----------LSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+ V ER ++ LSGG +Q+V IA+ + P++L++DE T +D
Sbjct: 376 PARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 53/220 (24%), Positives = 105/220 (47%), Gaps = 28/220 (12%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
++++ G AL+G++G+GKST++ ++ ++P G + I+ IN + +
Sbjct: 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78
Query: 460 K-KIGLVSQE-PVLFTGSIKDNIAYGK---------DDATTEEIRVATELANAAKFIDK- 507
+ IG++ QE V+ ++ +N+ G+ + E+RV AA + +
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV 133
Query: 508 -LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEAL 565
L +D V LS KQ + IA+ ++ D +++++DE TS+L + E + + +
Sbjct: 134 GLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LI 187
Query: 566 DRIMVNRTTVIV--AHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ T IV +H+L+ +R D V+ G V G
Sbjct: 188 MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-07
Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 49/194 (25%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I D F YP P +F + I + A+VG +G GKST++ LI P +G V
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 444 L--------------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489
+DG++L S P+L+ + K A
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDL---------------SSNPLLYMMRCFPGVPEQKLRAHL 611
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
V LA + LSGGQK R+A A+ K P ILLLDE
Sbjct: 612 GSFGVTGNLALQPMY-----------------TLSGGQKSRVAFAKITFKKPHILLLDEP 654
Query: 550 TSALDAES-EKVVQ 562
++ LD ++ E ++Q
Sbjct: 655 SNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 44/207 (21%)
Query: 411 SGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLID---GINLKEF------ 453
G LVG +G GKST + ++ +F DP + ++D G L+ +
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 454 -QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
++ I K V P G + + + + +E+ +D+L +
Sbjct: 85 GDVKVIVKP-QYVDLIPKAVKGKVGELLKKKDERGKLDEL------------VDQL--EL 129
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA----ESEKVVQEALDRI 568
++ + QLSGG+ QR+AIA A+ +D DE +S LD + ++++E
Sbjct: 130 RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE---LA 186
Query: 569 MVNRTTVIVAHRLSTVRNADMIA-VIH 594
+ ++V H L+ + D ++ IH
Sbjct: 187 EDDNYVLVVEHDLAVL---DYLSDYIH 210
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 54/187 (28%)
Query: 1066 LKIRAGKTVALVGESGSGKST----------------------VVSLLQRFYDP---DAG 1100
L I + V LVG +G+GKST +V+ LQ+ DP G
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQ--DPPRNVEG 81
Query: 1101 HI---TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
+ +G+E Q LK LV +P ++ +A ++Q +
Sbjct: 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDP---SEKNLNELA----------KLQEQLD 128
Query: 1158 MANAHKF-------ICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
N + + L D + LSGG ++ A+ RA+V +P +LLLDE T
Sbjct: 129 HHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEPT 184
Query: 1211 SALDAES 1217
+ LD E+
Sbjct: 185 NHLDIET 191
|
Length = 635 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 61/258 (23%), Positives = 98/258 (37%), Gaps = 72/258 (27%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG-- 463
+ I G + G SGSGKS++I + Y A + + + I
Sbjct: 15 DVDIPLGVLTCVTGVSGSGKSSLI--NDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKV 72
Query: 464 -LVSQEPV-------------LFTGSIKD----------------NIAY-GKD-----DA 487
++ Q P+ +F I++ + Y GK D
Sbjct: 73 IVIDQSPIGRTPRSNPATYTGVFD-EIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDM 131
Query: 488 TTEEIRVATELANAAKFIDKLPQ---GIDTLV---------GEHGTQLSGGQKQRIAIAR 535
T EE A +F + +P+ + TL G+ T LSGG+ QRI +A+
Sbjct: 132 TVEE---------ALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAK 182
Query: 536 AILKDPR---ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIA 591
+ K + +LDE T+ L K + E L R++ TV+V H L ++ AD I
Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242
Query: 592 VI------HRGKIVEKGT 603
+ G++V GT
Sbjct: 243 DLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 4e-07
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDR 1227
L Q +VG + SG + R+A+A A P +L+LDE TS LDAE E ++ +
Sbjct: 46 LDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEEL 105
Query: 1228 VM------KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEK 1261
+ + TV++ ++ + IV
Sbjct: 106 RLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLL 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVV--VAH 1239
+L+ G+ Q+V IA A+ P++L+ DE T+A++ ++ + L R+ +N T + ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 1240 RLSTI-KNADMIAVVKNGVIVEKGKHENLINIP 1271
L + + AD I V+ G VE + L+ P
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTP 250
|
Length = 330 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 32/199 (16%)
Query: 1069 RAGKTVALVGESGSGKSTVVSLLQ--------RFYDPDAGHITLD---GVEIQKLQLKWL 1117
R G+ + LVG +G GKST + +L +F DP LD G E+Q K L
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVG 1177
+ V +P + D I GK G+ ++ E + + L+ V
Sbjct: 84 EGDVK-VIVKP-QYVDLI-PKAVKGKVGEL----LKKKDERGKLDELVDQLEL---RHVL 133
Query: 1178 ERGL-QLSGGQKQRVAIARAIVKDPKILLLDEATSALDA----ESERVVQDALDRVMKNR 1232
+R + QLSGG+ QRVAIA A+ +D DE +S LD + R+++ + +
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIR---ELAEDDN 190
Query: 1233 TTVVVAHRLSTIKNADMIA 1251
+VV H L+ + D ++
Sbjct: 191 YVLVVEHDLAVL---DYLS 206
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--- 454
+ +F SI+ + G +G GKS+++ +I P +G + N+
Sbjct: 13 QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
+I +GL + V +N+ + EI + E AA KL
Sbjct: 72 CTYIGHNLGLKLEMTVF------ENLKF------WSEIYNSAETLYAAIHYFKL----HD 115
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
L+ E LS G ++ +AIAR I + LLDE + L E+ ++
Sbjct: 116 LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162
|
Length = 195 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 32/232 (13%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQK 1111
S D + R LNL++R G+ A++G +GSGKST+ + L + Y+ G + G ++ +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 1112 LQLKWLRQQMG--LVSQEPV---------LFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
L + R G + Q PV + A +Y Q + +
Sbjct: 70 LSPE-DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG---------QEPLDRFD 119
Query: 1161 AHKFICS----LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+ L+ D + + SGG+K+R I + V +P++ +LDE+ S LD +
Sbjct: 120 FQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDID 179
Query: 1217 SERVVQDALDRVMK-NRTTVVVAHR---LSTIKNADMIAVVKNGVIVEKGKH 1264
+ ++V D ++ + R+ ++V H L IK D + V+ G IV+ G
Sbjct: 180 ALKIVADGVNSLRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDF 230
|
Length = 248 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLK------EFQLQWI 458
+ + + AL+G++G+GKST++ + Y +G +L G I+ K E + +
Sbjct: 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+++ LV Q V+ DN+ G+ + + D+L ID
Sbjct: 79 HQELNLVLQRSVM------DNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL--DIDIDPRA 130
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
LS Q Q I IA+A + +I+++DE TS+L +EK V
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEV 170
|
Length = 491 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 1181 LQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDR-VMKNRTTV-VVA 1238
+ LSGG+ QRVAIA A++++ L DE ++ LD E A+ R + + T VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1239 HRLSTIKN-ADMIAVV 1253
H L+ + +D I V
Sbjct: 130 HDLAVLDYLSDRIHVF 145
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-06
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 21/174 (12%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKST----VVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
+ + ++ I+ G+ ++G GSG ST + S F+ G IT DG+ ++++
Sbjct: 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK 133
Query: 1114 LKWLRQQMGLVSQEPVLF-----NDT----IRANIAYGKGGDATEAEIQAASEMANAHKF 1164
K R + ++ V F +T R + + E A +A+ +
Sbjct: 134 -KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY--AKHIADVYMA 190
Query: 1165 ICSLQQGYDTMVGE---RGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
L +T VG RG+ SGG+++RV+IA A + KI D AT LD+
Sbjct: 191 TYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 65/232 (28%)
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVI----SLIERFYDPQAGEVLI 445
+ + R I FS + G ++G+ GSG ST++ + E + G++
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE-GDIHY 69
Query: 446 DGINLKEFQLQWIRKKIGLVSQE----PVLFTGSIKDNIAYGKDDATTEE-IRVATELAN 500
+GI KEF ++ + I VS+E P L T E + A
Sbjct: 70 NGIPYKEFAEKYPGEII-YVSEEDVHFPTL----------------TVRETLDFALRC-- 110
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+G + + G +SGG+++R++IA A++ +L D +T LD+ +
Sbjct: 111 ---------KGNEFVRG-----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST--- 153
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNA-------------DMIAVIHRGKIV 599
AL+ + RT +A L T D + V++ G+ +
Sbjct: 154 ---ALEILKCIRT---MADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-06
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE----RVVQDALDRVMKNRTTVVV 1237
+LSGG+ QRVAIA A+++D + DE +S LD RV+++ + + +VV
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE---DGKYVIVV 269
Query: 1238 AHRLSTIKNADMIA 1251
H L+ + D ++
Sbjct: 270 EHDLAVL---DYLS 280
|
Length = 591 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-06
Identities = 45/160 (28%), Positives = 86/160 (53%), Gaps = 25/160 (15%)
Query: 412 GTTAALVGQSGSGKSTVIS-LIERFYDP--QAGEVLIDGINLKE-FQLQWIRKKIGLVSQ 467
GT AL+G SG+GK+T+++ L ER G+ L++G L FQ + IG V Q
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ-----RSIGYVQQ 843
Query: 468 EPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAK--FIDK------LPQGIDTLVGE 518
+ + L T ++++++ + + +R ++ + K ++++ + D +VG
Sbjct: 844 QDLHLPTSTVRESLRF------SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILL-LDEATSALDAES 557
G L+ Q++R+ I ++ P++LL LDE TS LD+++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 9e-06
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 24/163 (14%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLL-QRFYDPDAGHITLDG--VEIQKLQLKWLRQQMGLV 1124
++ G AL+G SG+GK+T++++L +R G IT V + L + R +G V
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERV---TTGVITGGDRLVNGRPLDSSFQRS-IGYV 841
Query: 1125 SQEPV-LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKF--------ICSLQQGYDTM 1175
Q+ + L T+R ++ + A ++ ++ + K + ++ D +
Sbjct: 842 QQQDLHLPTSTVRESLRF-------SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV 894
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILL-LDEATSALDAES 1217
VG G L+ Q++R+ I +V PK+LL LDE TS LD+++
Sbjct: 895 VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L+ ++ Y V R L + +R G+ L+G +G+GK+T +L +G
Sbjct: 1938 LRLNELTKVYSGTSSPAVDR-LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND--TIRANI---AYGKGGDATEAEIQAASE 1157
T+ G I + + Q MG Q + +D T R ++ A +G A E E +
Sbjct: 1997 TVAGKSILT-NISDVHQNMGYCPQFDAI-DDLLTGREHLYLYARLRGVPAEEIE-----K 2049
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
+AN L D + G SGG K++++ A A++ P ++LLDE T+ +D ++
Sbjct: 2050 VANWSIQSLGLSLYADRLAG----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105
Query: 1218 ERVVQDALDRVMKN-RTTVVVAHRL 1241
R++ + + +++ R V+ +H +
Sbjct: 2106 RRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 31/214 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL-----QRFYDP 1097
I L++ Y RP + +L+ ++ G+ +VG +G+GKST++SL+ Q +
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY--- 314
Query: 1098 DAGHITLDGVEIQKLQLKW-LRQQMGLVSQEPVL---FNDTIRANIAYGKGGDATEAEI- 1152
+ +TL G + W +++ +G VS L + ++R I G D+ I
Sbjct: 315 -SNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF-DS----IG 368
Query: 1153 --QAASE--MANAHKFICSLQQGYDTMVGERGLQ-LSGGQKQRVAIARAIVKDPKILLLD 1207
QA S+ A +++ L G D + LS GQ++ I RA+VK P +L+LD
Sbjct: 369 IYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILD 426
Query: 1208 EATSALDAESERVVQDALDRVMKNRTT--VVVAH 1239
E LD + ++V+ +D ++ T + V+H
Sbjct: 427 EPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 66/290 (22%), Positives = 116/290 (40%), Gaps = 30/290 (10%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
+L+D++F + S + G ++G +GSGKST+ +LI P G V
Sbjct: 23 KLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD 82
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
I G I GL Q + +K + + E I E A+ KF
Sbjct: 83 IKG------SAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKF 136
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
I Q + T S G K R+ A ++ +P IL++DEA S D K +
Sbjct: 137 IY---QPVKTY--------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDK 185
Query: 565 LDRIMVN-RTTVIVAHRLSTVRNADMIAV-IHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
++ +T ++H LS V++ A+ +H G++ E G ++V+ Y + L+
Sbjct: 186 MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH----YDEF--LK 239
Query: 623 EANKESEQTIDGQRKSEISMESLRH---SSHRMSLRRSISRGSSIGNSSR 669
+ N+ S + + + E + +H + R +G +
Sbjct: 240 KYNQMSVE--ERKDFREEQISQFQHGLLQEDQTGRERKRKKGKKTSRKFK 287
|
Length = 549 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 43/208 (20%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT---LDG-VEIQ--- 1110
+Q+ R++ R G AL+G SG+GK+T++ +L AG T ++G + I
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIRISGFP 945
Query: 1111 KLQLKWLRQQMGLVSQEPVLFND------TIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
K Q + R G Q ND T+R ++ Y A ++ E++ K
Sbjct: 946 KKQETFARIS-GYCEQ-----NDIHSPQVTVRESLIY-------SAFLRLPKEVSKEEKM 992
Query: 1165 I--------CSLQQGYDTMVGERGLQ-LSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+ L D +VG G+ LS Q++R+ IA +V +P I+ +DE TS LDA
Sbjct: 993 MFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052
Query: 1216 ESERVVQDAL-DRVMKNRTTVVVAHRLS 1242
+ +V + + V RT V H+ S
Sbjct: 1053 RAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 50/193 (25%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
++L++ I V + G SGSGKST+V +G+ L +
Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTLV---------------NEGLYASGKAR--LISFL 54
Query: 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGL 1181
S+ ++F D ++ I G GY T+ + L
Sbjct: 55 PKFSRNKLIFIDQLQFLIDVG---------------------------LGYLTL--GQKL 85
Query: 1182 Q-LSGGQKQRVAIARAIVKDPK--ILLLDEATSALDAESERVVQDALDR-VMKNRTTVVV 1237
LSGG+ QRV +A + +P + +LDE ++ L + + + + + T +++
Sbjct: 86 STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145
Query: 1238 AHRLSTIKNADMI 1250
H L + +AD I
Sbjct: 146 EHNLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL------- 1117
+ +RAG+ V L G G+G+S ++ LL AG + LDG + + ++
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRDAIRAG 329
Query: 1118 -------RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ- 1169
R+ G++ V N I A + + G I E NA +FI SL
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCL----INNRWEAENADRFIRSLNI 385
Query: 1170 --QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD--AESE--RVVQD 1223
+ ++ LSGG +Q+ + R + +D K++LLDE T +D A+ E V+ +
Sbjct: 386 KTPSREQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE 441
Query: 1224 ALDRVMKNRTTVVVAHRL-STIKNADMIAVVKNGVIV 1259
+ + V+ L + AD I V++ G I
Sbjct: 442 LAAQ---GVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 26/212 (12%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQ 1120
RD++ + G+ + + G G+ ++ +V L + AG ITL G +I + +
Sbjct: 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324
Query: 1121 MGLVSQE----------PVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ- 1169
LV++E + FN I +NI K + S+ I S++
Sbjct: 325 FALVTEERRSTGIYAYLDIGFNSLI-SNIRNYKNKVGLLDNSRMKSD---TQWVIDSMRV 380
Query: 1170 --QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD--AESERVVQDAL 1225
G+ T +G LSGG +Q+V I R ++ P+IL+LDE T +D A+ E + Q
Sbjct: 381 KTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE-IYQLIA 435
Query: 1226 DRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNG 1256
+ K++ ++++ + + D I V+ NG
Sbjct: 436 ELAKKDKGIIIISSEMPELLGITDRILVMSNG 467
|
Length = 491 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 28/171 (16%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+R E +F + +G + G +G+GK+T++ ++ ++G++ IDG
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEI---------RVATELANAAKFI 505
+ + + P L K D +T E R A ++ +A I
Sbjct: 80 RS---RFMAYLGHLPGL------------KADLSTLENLHFLCGLHGRRAKQMPGSALAI 124
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
L DTLV QLS GQK+R+A+AR L + LLDE + LD E
Sbjct: 125 VGLAGYEDTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR- 567
PQ ID LSGG+ QR+AIA A+L++ L DE ++ LD E A+ R
Sbjct: 67 PQYID---------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117
Query: 568 IMVNRTTVIV 577
+ T +V
Sbjct: 118 SEEGKKTALV 127
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 501 AAKFIDKLP---QGIDTLV---------GEHGTQLSGGQKQRIAIARAILKD---PRILL 545
A +F + +P + + TL G+ T LSGG+ QRI +A+ + K + +
Sbjct: 796 AYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYI 855
Query: 546 LDEATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRNADMIAVI------HRGKI 598
LDE T+ L + K + E L R++ TV+V H L ++ AD I + G +
Sbjct: 856 LDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTV 915
Query: 599 VEKGT 603
V GT
Sbjct: 916 VASGT 920
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 34/122 (27%)
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE----------------- 1042
S FS++++KAK A + R +ID LE+VK
Sbjct: 270 SRFSANASKAKQATS-------RAKQIDK-----IKLEEVKPSSRQNPFIRFEQDKKLHR 317
Query: 1043 --IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+ +++ + + P +F++LNL + AG+ +A++GE+G GK+T++ L +PD+G
Sbjct: 318 NALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374
Query: 1101 HI 1102
+
Sbjct: 375 TV 376
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 57/215 (26%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ- 1119
F ++++K G L+G +G GKST + +L +P AG+++LD E +L LRQ
Sbjct: 17 FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE----RLGKLRQD 72
Query: 1120 ------------------QMGLVSQEPVLFNDTIRANIAYGKGGDATE------AEIQAA 1155
++ V QE D I A + +E A+++
Sbjct: 73 QFAFEEFTVLDTVIMGHTELWEVKQE----RDRIYAL------PEMSEEDGMKVADLEVK 122
Query: 1156 -SEM------ANAHKFICSL----QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKIL 1204
+EM A A + + + +Q Y M +++ G K RV +A+A+ +P IL
Sbjct: 123 FAEMDGYTAEARAGELLLGVGIPEEQHYGLMS-----EVAPGWKLRVLLAQALFSNPDIL 177
Query: 1205 LLDEATSALDAESERVVQDALDRVMKNRTTVVVAH 1239
LLDE T+ LD + R ++D L+ +N T ++++H
Sbjct: 178 LLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISH 210
|
Length = 530 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 33/235 (14%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEV 443
E+R++ P P+ + S S+ G + G G+G++ ++ + Y + GE+
Sbjct: 261 EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320
Query: 444 LIDGINLK-EFQLQWIRKKIGLVSQE-------PVLFTGSIKDNIAYGKDDATTEEIRV- 494
IDG +K Q I + I +V ++ PV+ + NI D T R+
Sbjct: 321 FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSRID 377
Query: 495 -ATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A EL + I +L + T E +LSGG +Q+ +A+ +L +P+IL+LDE T
Sbjct: 378 DAAELKTILESIQRLK--VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435
Query: 553 LD--AESE------KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
+D A+ E ++VQ+ + I+ ++ L V +D + V+H GK+
Sbjct: 436 IDVGAKYEIYKLINQLVQQGVAIIV-------ISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 48/215 (22%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS---QEPVL-F 472
LVG++G+GKST++ ++ GEVL+D + ++ + + I V+ Q+P
Sbjct: 34 LVGRNGAGKSTLMKIL-------NGEVLLD-----DGRIIYEQDLI--VARLQQDPPRNV 79
Query: 473 TGSIKDNIAYG---------------KDDATTEEIRVATELANAAKFID-----KLPQGI 512
G++ D +A G T + ELA + +D +L I
Sbjct: 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRI 139
Query: 513 DTLVGEHG-------TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
+ ++ + G + LSGG ++ A+ RA++ +P +LLLDE T+ LD E+ + ++ L
Sbjct: 140 NEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199
Query: 566 DRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+ + ++H S +RN A I + RGK+V
Sbjct: 200 --KTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 70/262 (26%), Positives = 111/262 (42%), Gaps = 48/262 (18%)
Query: 394 PARPNEQIFSGFSISISS--GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
P N+ F+ IS+ + G LVG +GSGKST+ ++I P G+V +G
Sbjct: 30 PKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG---- 85
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL-PQ 510
++ I GL Q TG +NI E ++ + K I + P+
Sbjct: 86 --EVSVIAISAGLSGQ----LTGI--ENI----------EFKMLC-MGFKRKEIKAMTPK 126
Query: 511 GID-TLVGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
I+ + +GE Q S G + ++ + I +P IL++DEA S D + Q+ L
Sbjct: 127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCL 183
Query: 566 DRIM----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI- 619
D+I N+T V+H L VR IA I GK+ + G ++D Y +
Sbjct: 184 DKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE----LDDVLPKYEAFLN 239
Query: 620 ----RLQEANKESEQTIDGQRK 637
+ + KE +D R
Sbjct: 240 DFKKKSKAEQKEFRNKLDESRF 261
|
Length = 264 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 50/210 (23%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ VS Y R + + L + G + L+G +G+GKST++ LL P +G I
Sbjct: 313 LKMEKVSAGYGDR---IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
Query: 1103 TL-DGVEI---QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
L G+++ + QL++LR A E+ +Q + +
Sbjct: 370 GLAKGIKLGYFAQHQLEFLR----------------------------ADESPLQHLARL 401
Query: 1159 ANAHKFICSLQQGYDTM---------VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
A Q+ D + V E + SGG+K R+ +A + + P +LLLDE
Sbjct: 402 APQE----LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457
Query: 1210 TSALDAESERVVQDALDRVMKNRTTVVVAH 1239
T+ LD + + + +AL + VVV+H
Sbjct: 458 TNHLDLDMRQALTEAL--IDFEGALVVVSH 485
|
Length = 638 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-05
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD---PKILLLDEATSALDAESER 1219
+ +C + GY + G+ LSGG+ QR+ +A+ + K + +LDE T+ L + +
Sbjct: 811 QTLCDVGLGYIRL-GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIK 869
Query: 1220 VVQDALDRVMKNRTTVVV-AHRLSTIKNADMI------AVVKNGVIVEKGKHENLI 1268
+ + L R++ TVVV H L IK AD I G +V G E +
Sbjct: 870 KLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEVA 925
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-05
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 500 NAAKF---IDKLPQGIDTLV---------GEHGTQLSGGQKQRIAIARAILK---DPRIL 544
A +F I K+ + + TLV G+ T LSGG+ QR+ +A+ + K +
Sbjct: 788 EALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLY 847
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRNADMIAVI------HRGK 597
+LDE T+ L + K + E L R++ TVIV H L ++ AD I + G+
Sbjct: 848 ILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGE 907
Query: 598 IVEKGTHSKLVEDPE---GAY 615
IV GT ++ + G Y
Sbjct: 908 IVASGTPEEVAKVKASYTGKY 928
|
Length = 935 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 34/195 (17%)
Query: 1041 GEI--ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
GE+ E+ +++ P P ++ D++ +R G+ + + G G+G++ +V L Y P
Sbjct: 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PG 314
Query: 1099 A--GHITLDGVEIQKLQLKWLRQQM--------------GLVSQEPVLFNDTIRANIAYG 1142
G I +DG + ++++ +Q + G+V V N T+ A +
Sbjct: 315 RWEGEIFIDG---KPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFT 371
Query: 1143 KGGDATEAEIQAASEMANAHKFICSLQ---QGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199
G I A+E+ + I L+ + + +LSGG +Q+ +A+ ++
Sbjct: 372 GGS-----RIDDAAELKTILESIQRLKVKTASPELAIA----RLSGGNQQKAVLAKCLLL 422
Query: 1200 DPKILLLDEATSALD 1214
+PKIL+LDE T +D
Sbjct: 423 NPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 22/222 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID---GINLKEFQLQWIRKKI 462
S+++++G + A VG +GSGKS + + +GE L QLQ
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ------ 76
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQ--GIDTLVGE 518
LVS E + + D ++ G+DD TT EI + E+ + A+ ++L Q GI L+
Sbjct: 77 KLVSDE---WQRNNTDMLSPGEDDTGRTTAEI-IQDEVKDPAR-CEQLAQQFGITALLDR 131
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT-VIV 577
LS G+ ++ + +A++ +P +L+LDE LD S + + E L + + T V+V
Sbjct: 132 RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191
Query: 578 AHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
+R + + V+ + E G ++++ + +QL
Sbjct: 192 LNRFDEIPDFVQFAGVLADCTLAETGEREEILQ--QALVAQL 231
|
Length = 490 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 89/368 (24%), Positives = 146/368 (39%), Gaps = 78/368 (21%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DI + + S R + I S++++ G LVG++G+GK+T + R+ A
Sbjct: 177 DIHMENFSISVGGR--DLIVDA-SVTLAFGRHYGLVGRNGTGKTTFL----RYMAMHA-- 227
Query: 443 VLIDGI-------------------------NLKEFQLQWIRKKIGLVSQ------EPVL 471
IDGI N + Q + ++ LV+Q E
Sbjct: 228 --IDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETET 285
Query: 472 FTGSIKDNIAYGKDDATT--EEIRVATEL-------ANAAKFIDKLPQGIDTLVGEHGTQ 522
G + KD + EEI EL A AA + L + V T
Sbjct: 286 GKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKT- 344
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR-- 580
SGG + RIA+ARA+ +P +LLLDE T+ LD + ++ L + +T ++V+H
Sbjct: 345 FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHARE 402
Query: 581 -LSTVRNADMIAVIHRGKIVE-KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
L+TV I +H K+V KG + E + E+N+ S +
Sbjct: 403 FLNTV--VTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHM------ 454
Query: 639 EISMESLRHSSHRMSLRRS-------ISRGSSIGNSSRHSISVSF-----GLPSGQFADT 686
+ ++ R+++ R SL +S + ++ N + G P F+D
Sbjct: 455 QAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDA 514
Query: 687 ALGEPAGP 694
+ G P GP
Sbjct: 515 SFGYPGGP 522
|
Length = 718 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 36/203 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISL---------IERFYDPQAGEVLIDGINL 450
Q+ + + G AL+G SG+GK+T++ + IE G++ I G
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE-------GDIRISGFPK 946
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAK--FIDK 507
K+ I G Q + ++++++ Y + +R+ E++ K F+D+
Sbjct: 947 KQETFARIS---GYCEQNDIHSPQVTVRESLIY------SAFLRLPKEVSKEEKMMFVDE 997
Query: 508 LPQGI------DTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+ + + D +VG G T LS Q++R+ IA ++ +P I+ +DE TS LDA + +
Sbjct: 998 VMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1057
Query: 561 VQEAL-DRIMVNRTTVIVAHRLS 582
V + + + RT V H+ S
Sbjct: 1058 VMRTVRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 41/193 (21%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 1038 DVKGEI-ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
++ I E +++ P + D++ +R G+ + + G G+G++ +V L Y
Sbjct: 252 EIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP 311
Query: 1097 PD-AGHITLDGVEI------QKLQLKWL-----RQQMGLVSQEPVLFNDTIRANIAYGKG 1144
G++ ++G + Q ++ R++ G+V V N T+ ++
Sbjct: 312 GKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF--- 368
Query: 1145 GDATEAEIQAASEMANAHKFICSLQ---QGYDTMVGERGLQLSGGQKQRVAIARAIVKDP 1201
+ I AA+E+ I L+ +G +LSGG +Q+ +A+ ++ +P
Sbjct: 369 --CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG----RLSGGNQQKAVLAKMLLTNP 422
Query: 1202 KILLLDEATSALD 1214
++L+LDE T +D
Sbjct: 423 RVLILDEPTRGVD 435
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 1146 DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILL 1205
DA AE +AAS +A F +Q + SGG + R+A+ARA+ +P +LL
Sbjct: 316 DAYTAEARAASILAGL-SFTPEMQV-------KATKTFSGGWRMRIALARALFIEPDLLL 367
Query: 1206 LDEATSALDAESERVVQDALDRVMKNRTTVVVAH 1239
LDE T+ LD + ++ L + K T +VV+H
Sbjct: 368 LDEPTNHLDLHAVLWLETYLLKWPK--TFIVVSH 399
|
Length = 718 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 504 FIDKLPQGID------TLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDA 555
FID+L ID TL + T LSGG+ QR+ +A + +P + +LDE ++ L
Sbjct: 64 FIDQLQFLIDVGLGYLTLGQKLST-LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMI------AVIHRGKIVEKG 602
+ + E + ++ TVI+ H L + +AD I + GK+V G
Sbjct: 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 39/200 (19%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
I S T +VGQ+G+GK+T +I+ + G
Sbjct: 17 EIEFFSPLTL-IVGQNGAGKTT----------------IIEALKYALTGEL-PPNSKGGA 58
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA--NAAKFIDKLPQG-IDTLVGEHGTQ 522
++ G ++ + ++A ++ + LA F QG + + + +
Sbjct: 59 HDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC---HQGESNWPLLDMRGR 115
Query: 523 LSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM------V 570
SGG+K R+A+A + IL LDE T+ LD E+ ++E+L I+
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEERKSQK 172
Query: 571 NRTTVIVAHRLSTVRNADMI 590
N +++ H V AD I
Sbjct: 173 NFQLIVITHDEELVDAADHI 192
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 33/229 (14%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KL 1112
+ D + RD++ + G+ + G GSG++ +++ L G I L+G +I +
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331
Query: 1113 QLKWLRQQMGLVSQ---EPVLF-NDTIRANIAY----------GKGGDATEAEIQAASEM 1158
L +++ M +++ + F N +I N+A G G E + Q +E
Sbjct: 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN 391
Query: 1159 ANAHKFI-C-SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD-- 1214
+ C S+ Q + E LSGG +Q+V I++ + P++++ DE T +D
Sbjct: 392 QRELLALKCHSVNQN----ITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443
Query: 1215 --AESERVVQDALDRVMKNRTTVVVAHRLSTIKNA-DMIAVVKNGVIVE 1260
AE +V++ D + ++V+ L I D IAV G + +
Sbjct: 444 AKAEIYKVMRQLAD---DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-04
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 69/209 (33%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE ++S + R + DL+ + G V ++G +G+GKST+ ++ PD+G I
Sbjct: 325 IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 1103 TL-DGVEIQKLQLKWLRQQMGLVSQ-------EPVLF------NDTI---------RANI 1139
+ + V ++ V Q ++ D I RA +
Sbjct: 382 KIGETV------------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429
Query: 1140 -AYG-KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197
+ KGGD QQ VG LSGG++ R+ +A+ +
Sbjct: 430 GRFNFKGGD----------------------QQ---KKVG----VLSGGERNRLHLAKTL 460
Query: 1198 VKDPKILLLDEATSALDAESERVVQDALD 1226
+ +LLLDE T+ LD E+ R +++AL
Sbjct: 461 KQGGNVLLLDEPTNDLDVETLRALEEALL 489
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 43/201 (21%)
Query: 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGK 1084
+++ + SG I+ E+ +V+++ Q+ +D + +++ G +AL+G +G GK
Sbjct: 308 QVEEASRSGKIV------FEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGK 358
Query: 1085 STVVSLLQRFYDPDAGHI---TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
+T++ L+ D+G I T KL++ + Q + E T+ N+A
Sbjct: 359 TTLLKLMLGQLQADSGRIHCGT-------KLEVAYFDQHRAELDPE-----KTVMDNLAE 406
Query: 1142 GKGGDATEAEIQAASEMANAHK-FICSLQQGY-----DTMVGERGLQLSGGQKQRVAIAR 1195
GK E+ M N + Q + M + L SGG++ R+ +AR
Sbjct: 407 GK------QEV-----MVNGRPRHVLGYLQDFLFHPKRAMTPVKAL--SGGERNRLLLAR 453
Query: 1196 AIVKDPKILLLDEATSALDAE 1216
+K +L+LDE T+ LD E
Sbjct: 454 LFLKPSNLLILDEPTNDLDVE 474
|
Length = 635 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 522 QLSGGQKQRIAIARAI---LKDPRIL-LLDEATSALDAESEKVVQEALDRIMVNRTTVIV 577
QLSGG+K+ A+A + PR L +LDE LD + + EA+ +V VIV
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 578 A-HRLSTVRNADMIAVIHRGKIVEKGTH 604
H AD +IH K++
Sbjct: 137 ITHLPELAELAD--KLIHIKKVITGVYK 162
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 19/195 (9%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKST----VISLIERFYDPQAGEVLIDGINLKEFQL 455
I I G ++G+ GSG ST + S + F+ G + DGI +E +
Sbjct: 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKK 134
Query: 456 QWIRKKIGLVSQE----PVLFTGSIKDNIAYGKDDAT-----TEEIRVATELANAAKFID 506
+ R + ++ P L G D A K + E A +A+
Sbjct: 135 HY-RGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY-AKHIADVYMATY 192
Query: 507 KLPQGIDTLVGEHGTQ-LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
L +T VG + +SGG+++R++IA A L +I D AT LD+ + AL
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 566 DRIMVN--RTTVIVA 578
+ N TT +VA
Sbjct: 253 -KTSANILDTTPLVA 266
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 1183 LSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
LSGG +Q+VAIAR ++ PK+L+LDE T +D
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 43/219 (19%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQ------LQW 457
S ++ G + G G+G++ ++ ++ +G V +DG + + Q + +
Sbjct: 272 SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVY 331
Query: 458 I---RKKIGLVSQEPVLFTGSIKDNI---AYGKDDATTEEIRVATELANAAKFID----K 507
I RK+ GLV S+K+N+ A ++ A E + FI K
Sbjct: 332 ISEDRKRDGLV------LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV------ 561
P ++ +G LSGG +Q++AIAR ++ P++L+LDE T +D ++K +
Sbjct: 386 TP-SMEQAIGL----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
Query: 562 --QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
E L I+V+ V + +D I V+H G+I
Sbjct: 441 FKAEGLSIILVSSEMPEV------LGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 1183 LSGGQKQRVAIARAIVKDPK---ILLLDEATSALDAESERVVQDALDRVMKNRTTVVV-A 1238
LSGG+ QRV +A+ + K + +LDE T+ L + + + + L R++ TV+V
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 1239 HRLSTIKNADMI------AVVKNGVIVEKGKHENLINIPD 1272
H L IK AD I G IV G E + +
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKA 922
|
Length = 935 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 9e-04
Identities = 60/272 (22%), Positives = 105/272 (38%), Gaps = 50/272 (18%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-- 1098
E L + + + + +D + I+ + L+G SGK+T++ L DP
Sbjct: 161 AESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLK 220
Query: 1099 -AGHITLDGVEIQKLQLKWLRQQMGLVSQEPV-------------------------LFN 1132
+G IT +G + + R+ +SQ V L +
Sbjct: 221 VSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLS 277
Query: 1133 DTIRANIAYGKGGDATEAEIQ---AASEMANAHKF--------ICSLQQGYDTMVGERGL 1181
+ R G EAE+ A+ M I L DT+VG+ +
Sbjct: 278 ELARRE---KDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334
Query: 1182 Q-LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHR 1240
+ +SGGQK+RV IV K L +DE ++ LD+ + + L +++ V+
Sbjct: 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSL 394
Query: 1241 LS----TIKNADMIAVVKNGVIVEKGKHENLI 1268
L T D I ++ G IV +G ++++
Sbjct: 395 LQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426
|
Length = 1470 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 25/212 (11%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIRKKI 462
S S+ +G L G G+G+S ++ L+ AG+V +DG I+++ + IR I
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPR-DAIRAGI 330
Query: 463 GLV----SQEPVLFTGSIKDNI---AYGKDDATTEEIRVATELANAAKFIDKL---PQGI 512
L E ++ S+ DNI A I E NA +FI L
Sbjct: 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD--AESE--KVVQEALDRI 568
+ L+ LSGG +Q+ + R + +D +++LLDE T +D A+ E V+ E +
Sbjct: 391 EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ- 445
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+ V+ L V AD I V+ G+I
Sbjct: 446 --GVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGG+K R+ + +++ P +L++DE T+ +D ES + + AL+ T + V+H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE--KYEGTLIFVSH 493
|
Length = 530 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 40/220 (18%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGINLKEFQLQWI 458
F S+ + +G L G G+G++ L E Y + G ++++G +
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRT---ELAETLYGLRPARGGRIMLNGKEINALSTA-Q 334
Query: 459 RKKIGLV-----SQEPVLF--------TGSIKDN-----IAYGKDDATTEEIRVATELAN 500
R GLV Q L+ ++ N I +++A E R A +
Sbjct: 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-- 392
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
KF Q TL SGG +Q++ IA+ + P++L++DE T +D +
Sbjct: 393 --KFNH-AEQAARTL--------SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARND 441
Query: 561 VQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKI 598
+ + + I V+ ++ L + AD + V+H+G+I
Sbjct: 442 IYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 51/225 (22%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERF-YDPQA-GEVLIDGINLK-EFQLQWIRKKI 462
S S+ G G GSG++ +++ + F D +A GE+ ++G ++ L ++K +
Sbjct: 283 SFSVCRGEILGFAGLVGSGRTELMNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340
Query: 463 GLVSQ---EPVLFTG-SIKDNIAY------GKDDATTEEIRVATELANAAKFIDKLPQGI 512
+++ + F SI N+A G E A + L
Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALDRI 568
+ V ++ T+LSGG +Q++ I++ + P +++ DE T +D AE KV+++ D
Sbjct: 401 HS-VNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD- 458
Query: 569 MVNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++V+ L + D IAV G++ + T+ + + E
Sbjct: 459 --GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEE 501
|
Length = 510 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 30/189 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++ + + + S + G ++G +G+GKST+ +I P +G +
Sbjct: 323 IEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 444 LI-DGINLKEFQLQWIRKKIGLVSQEPVLFTG--SIKDNIAYGKDDATTEEIRVATELAN 500
I + + K+ V Q ++ + I+ G D I++
Sbjct: 380 KIGETV------------KLAYVDQSRDALDPNKTVWEEISGGLD-----IIQLGKREVP 422
Query: 501 AAKFIDKLP-QGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ ++ + +G D VG QLSGG++ R+ +A+ + +LLLDE T+ LD E+
Sbjct: 423 SRAYVGRFNFKGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
Query: 558 EKVVQEALD 566
+ ++EAL
Sbjct: 479 LRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGG++ R+ +AR LK +L+LDE T+ LD E+ ++++E LD T ++V+H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS--YQGTVLLVSH 495
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 48/179 (26%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
+ +I+ G LVG++G GKST+++L++ G G +QL W V
Sbjct: 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAW-------V 69
Query: 466 SQE-PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE------ 518
+QE P L +++ I D E ++ +L +A + D I T+ G+
Sbjct: 70 NQETPALPQPALEYVI-----DGDREYRQLEAQLHDANERNDG--HAIATIHGKLDAIDA 122
Query: 519 -----------HG-----TQL-------SGGQKQRIAIARAILKDPRILLLDEATSALD 554
HG QL SGG + R+ +A+A++ +LLLDE T+ LD
Sbjct: 123 WTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
IEL ++S P + +DL+ +I+ G + + G SG+GKS+
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSS 42
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1288 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-214 Score=1957.11 Aligned_cols=1215 Identities=58% Similarity=0.933 Sum_probs=1117.8
Q ss_pred CccHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000777 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1288)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 122 (1288)
..++.++|+|+...++.+++++.+++++.|+++|++.++++++++.+....+. ...+.+..+++++++++++.++..|+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~lg~~~~~~~~~ 90 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-IASSEVSKVALYFVYLGVGVFISGFI 90 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999998754332 33356778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1288)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (1288)
+..||.+.++|...++|.++++.++|++++|||++ .+|++.+++++|++.|++++++.+..+++.+.+++++++++|++
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 77999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 000777 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1288)
Q Consensus 203 ~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1288)
.|+|+++++.+.|++++....+.+.+.+...+.+.+++++.++++|++.++|||.+|+.|+.+.++|.+.++...+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000777 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1288)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 362 (1288)
...+.++..++..++.++.+++.+|||+.++..+..++|.+++++.+++.+...+++..|++..+..+.+|+.++++.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 000777 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1288)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 442 (1288)
..|+++.....+.......|.|+|+||+|+||++++.++|+|+||+|++|+++||||||||||||++++|.|+|+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 99987765433334455679999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCC
Q 000777 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1288)
Q Consensus 443 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 522 (1288)
|++||.|+++++.+|+|++||+|+|+|.||++||+|||.||+|+++.+++.++|+++++++|+..||+||+|.+||+|.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEec
Q 000777 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 523 LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 602 (1288)
|||||||||||||||++||+||||||||||||+++|+.++++|++.+++||+|+|||||+++++||+|+||++|+|+|.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCC
Q 000777 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQ 682 (1288)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1288)
+|+||++.+ |.|.++++.|+....++..+++.+ . .... ..+.+.+. ..... .... .... .
T Consensus 570 ~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~--~-~~~~--~~s~~~s~-----~~~~~---~~~~-~~~~-----~ 629 (1228)
T KOG0055|consen 570 THDELIALG-GIYSSLVRLQELEKAAEDEEEEES--L-KEER--SRSLKSSS-----SSPSL---SRGS-NRSN-----L 629 (1228)
T ss_pred CHHHHHhcc-chHHHHHHHHhhhhhhhccccccc--h-hhhh--hhcccccc-----ccccc---cCCc-cccc-----c
Confidence 999999985 999999999976554332000000 0 0000 00000000 00000 0000 0000 0
Q ss_pred cccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhchH
Q 000777 683 FADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPP-HELKKDSR 761 (1288)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 761 (1288)
.......+...... ........+.+++.+.+|.|++++++++.+++.+..+|+++++++.++..+..++ +.......
T Consensus 630 ~~~~~~~e~~~~~~--~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~ 707 (1228)
T KOG0055|consen 630 LSVKPEGEDPEEPV--SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVR 707 (1228)
T ss_pred cccccccccccccc--ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 00000000000000 1111456788999999999999999999999999999999999999999998553 44555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHH
Q 000777 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1288)
Q Consensus 762 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l 841 (1288)
.|.++|++++++..++.+++.+++..++++++.++|.++|+++++++++|||.++|+ |.|.+|+.+|...++..+.+.+
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl 786 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRL 786 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchH
Q 000777 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1288)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~ 921 (1288)
..+++++..+++++++.|+++|++++++++++|++++..+.+.+++.....+.+....++.+...|++.+++||++|+.|
T Consensus 787 ~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e 866 (1228)
T KOG0055|consen 787 SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAE 866 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1288)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1288)
+++.+.|.+.++...+...++..+++..+++++++.++.+++++|+|.+++.+|.+++.+++.++..+.+.+..+.+..+
T Consensus 867 ~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s 946 (1228)
T KOG0055|consen 867 EKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASS 946 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 000777 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081 (1288)
Q Consensus 1002 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SG 1081 (1288)
+.++..++..++.+++++++++++.++..+.+...+..+|+|+|+||+|+||++|+.+||+|+||+|++||++|||||||
T Consensus 947 ~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 947 YAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred hCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCC
Confidence 99999999999999999999998776654444445668899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhch
Q 000777 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161 (1288)
Q Consensus 1082 sGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l 1161 (1288)
|||||++.||.|||+|++|.|.|||+||+++++++||++|++|+|||.||++||||||.||. .+++++||.+|++.|++
T Consensus 1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~-~~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS-EEVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC-CCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999994 35899999999999999
Q ss_pred hHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCc
Q 000777 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRL 1241 (1288)
Q Consensus 1162 ~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl 1241 (1288)
|+||.+||+||||.|||+|.+||||||||||||||++|||+||||||||||||.++|+.||++|++...+||+|+|||||
T Consensus 1106 H~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRL 1185 (1228)
T ss_pred HHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHhhc
Q 000777 1242 STIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSS 1284 (1288)
Q Consensus 1242 ~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1284 (1288)
+||++||.|+|+++|+|+|+|||+||+++ +|.|++|++.|..
T Consensus 1186 STIqnaD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1186 STIQNADVIAVLKNGKVVEQGTHDELLAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred hhhhcCCEEEEEECCEEEecccHHHHHhC-CCchHHHhhhccC
Confidence 99999999999999999999999999995 9999999998864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-172 Score=1714.04 Aligned_cols=1222 Identities=31% Similarity=0.506 Sum_probs=1019.5
Q ss_pred CCccHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 000777 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1288)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 121 (1288)
.+.+|+.+|+|+.+.++.+++++++++++.+++.|+.|++++.++|.+... +.+..+++++++++++.+++.|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-------~~~~~~~~~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-------ENVNDIIFSLVLIGIFQFILSF 115 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999988888899999999999999999999999999976421 1123345567778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1288)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 201 (1288)
++.+++.+.++++..++|.++|++++++|++|||.. +.|++++|+++|++.++..+...+..++..+++++++++++|+
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999985 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 000777 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1288)
Q Consensus 202 ~~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1288)
++|.+++++++++|+++++..++.+++++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+......+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1288)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--------~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 353 (1288)
+.....++..++..++.++.+++++|+|++++.+| .+++|.+++++.+.+.....+..+.+.+..++.+.+|
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888889999999999999886 5788999888877777777778888889999999999
Q ss_pred HHHHHHHhccCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHH
Q 000777 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1288)
Q Consensus 354 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~ 433 (1288)
++|++++++.+|+.+... .+...+. .+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999999877654311 1111122 24799999999998654567999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEE-CCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCC---------------------------
Q 000777 434 RFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--------------------------- 485 (1288)
Q Consensus 434 g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--------------------------- 485 (1288)
|+|+|++|+|.+ ||+++++++..++|++||||+|+|.||++||+|||.+|.+
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 5799999999999999999999999999999999999742
Q ss_pred ------------------------------CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 486 ------------------------------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 486 ------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
+.++++++++++.+++++++.++|+||||.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 24567899999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCC-----------------
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRG----------------- 596 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G----------------- 596 (1288)
||+++|+|||||||||+||+++++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999986 479999999999999889999999986
Q ss_pred ------------------------------EEeEecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhh
Q 000777 597 ------------------------------KIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLR 646 (1288)
Q Consensus 597 ------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1288)
+|+|+|+|+||++..+|.|+.+++.|......................
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~-- 750 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSA-- 750 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccc--
Confidence 599999999999855899999998775432111000000000000000
Q ss_pred cccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCCC-CCC--Cc---ccC-CchhhHhhhhhcCChhH
Q 000777 647 HSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGP-SQP--TE---EVA-PEVPTRRLAYLNKPEIP 719 (1288)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~---~~~-~~~~~~~~~~~~~~~~~ 719 (1288)
........ ........ ... .......... .............. ..+ .+ ... ....+.+++.+.+++++
T Consensus 751 ~~~~~~~~--~~~~~~~~-~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1466)
T PTZ00265 751 YKDSERGY--DPDEMNGN-SKH-ENESASNKKS-CKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKK 825 (1466)
T ss_pred cccccccc--cccccccc-ccc-cccccccccc-cccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHH
Confidence 00000000 00000000 000 0000000000 00000000000000 000 00 000 11122333444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM 799 (1288)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 799 (1288)
.++++++++++.+...|+++++++.+++.++.. .........|.+++++++++.+++.+++.++..+++.++..++|.+
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~ 904 (1466)
T PTZ00265 826 DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRR 904 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888899999999999999999877642 1122234567788888888899999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000777 800 CFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVS 879 (1288)
Q Consensus 800 l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~ 879 (1288)
+|++++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|.++++++++++++..+
T Consensus 905 lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~ 984 (1466)
T PTZ00265 905 LFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRV 984 (1466)
T ss_pred HHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877999999999999999999999999999999999999999999999999988876555444333
Q ss_pred HHHHHHHHHH--HHHH-------------HHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 880 GYTQMKFMKG--FSAD-------------AKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1288)
Q Consensus 880 ~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1288)
.....+.... ..+. ..+...+....+.|++.|++|||+|+.|+++.++|.+..+...+...+...
T Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1466)
T PTZ00265 985 FAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTL 1064 (1466)
T ss_pred HHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221111 0000 123355678899999999999999999999999999999999998888888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000777 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1288)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~ 1024 (1288)
..+...++++++.++..++++|+|++++..|.+++|++++++.++.+...++..+..+.++..++..+.+|++++++.++
T Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~ 1144 (1466)
T PTZ00265 1065 VNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKS 1144 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 88888999999999999999999999999999999999998877766667788899999999999999999999998765
Q ss_pred CCCCCCCCCcc---ccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC----
Q 000777 1025 KIDPSDESGTI---LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP---- 1097 (1288)
Q Consensus 1025 ~~~~~~~~~~~---~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p---- 1097 (1288)
+.+..+..... ++...|.|+|+||+|+||++++.+||+|+||+|+|||+||||||||||||||+++|+|||+|
T Consensus 1145 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~ 1224 (1466)
T PTZ00265 1145 NIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDH 1224 (1466)
T ss_pred cCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccc
Confidence 43221111111 12345789999999999976666899999999999999999999999999999999999999
Q ss_pred --------------------------------------------------CCceEEECCeeccCCCHHHHhcceEEEccC
Q 000777 1098 --------------------------------------------------DAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127 (1288)
Q Consensus 1098 --------------------------------------------------~~G~I~idG~di~~i~~~~lR~~i~~V~Qd 1127 (1288)
++|+|++||+||+++++++||++|+|||||
T Consensus 1225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qe 1304 (1466)
T PTZ00265 1225 HIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQE 1304 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCC
Confidence 699999999999999999999999999999
Q ss_pred CCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEe
Q 000777 1128 PVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207 (1288)
Q Consensus 1128 ~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLD 1207 (1288)
|+||+|||||||.||. +++++++|++|++.|++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||
T Consensus 1305 p~LF~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1305 PMLFNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred CccccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999995 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhhcCEEEEEeC----CEEE-EecChhhhhcCCCcHHHHHHH
Q 000777 1208 EATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKNADMIAVVKN----GVIV-EKGKHENLINIPDGFYASLIA 1280 (1288)
Q Consensus 1208 EaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~----G~Iv-e~Gt~~eLl~~~~g~y~~L~~ 1280 (1288)
|||||||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |.|+|+||+++++|.|++|++
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence 9999999999999999999984 68999999999999999999999999 9954 999999999844899999998
Q ss_pred Hh
Q 000777 1281 LH 1282 (1288)
Q Consensus 1281 ~~ 1282 (1288)
.|
T Consensus 1464 ~~ 1465 (1466)
T PTZ00265 1464 LA 1465 (1466)
T ss_pred hc
Confidence 76
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-162 Score=1535.50 Aligned_cols=1140 Identities=24% Similarity=0.306 Sum_probs=871.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q 000777 72 GLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDV 151 (1288)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 151 (1288)
..+..+.|+++..+++.+.....+ .. ...++.+++.++..+-+.+. ..+.+...+++.++|..+...++++.+
T Consensus 214 ~~~~~~~P~lL~~li~~~~~~~~~---~~---~g~~~a~~lf~~~~l~~l~~-~~~~~~~~~~g~r~R~al~~~IY~K~L 286 (1381)
T KOG0054|consen 214 DLAGFVGPLLLKKLILFFSEKRLP---LN---NGYLLAVLLFLASLLQSLLL-HQYFFVSFRVGMRLRSALISAIYRKAL 286 (1381)
T ss_pred HHHccccHHHHHHHHHHhcCCCcc---cc---hhHHHHHHHHHHHHHHHHHH-hHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 333556677888888877543111 11 11111122222223322222 223445678888888877666665544
Q ss_pred hhhhc---cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH
Q 000777 152 AFFDN---ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL----TLVMLSSIPLLAMSGGVM 224 (1288)
Q Consensus 152 ~~f~~---~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l----~l~~~~~~p~~~~~~~~~ 224 (1288)
..-.. ..+.|+++|.+++|+++++++.. +++.+|....-++++.++-|.. +++.++++.+++.+..++
T Consensus 287 ~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~-----~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 287 RLSNSARGETTVGEIVNLMSVDAQRLSDAAC-----FLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred cCchhhccCCCcchhhhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 33211 23789999999999999999864 5556665555555555444442 445555555566667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 225 AIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYAL 304 (1288)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1288)
++..++.+.+.++..+++...++|.++|||+||+|+||+.|.++..+.++++.+...+..+..++...+......++.++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999998888877766655444433333
Q ss_pred HHHHHHHH-HhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCCccc
Q 000777 305 SVWYGGKL-ILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGD 383 (1288)
Q Consensus 305 ~~~~g~~~-v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 383 (1288)
.++.+. ...+.+++..+|+.+..+..+..|+..+...+..+.++.++.+|+.+++..++. ++......+..+.+..
T Consensus 442 --tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~-~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 442 --TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL-DPDSVERSPDEAGENA 518 (1381)
T ss_pred --HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CccccccCCCCCCCce
Confidence 233333 446678888999999888888899999888899999999999999999976543 2221111122233457
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|.+|+|++....+.|+||||+|++|+.+||||+.|||||||+.+|+|+++..+|++.++| .++
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------sia 585 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVA 585 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEE
Confidence 9999999999764445699999999999999999999999999999999999999999999999 699
Q ss_pred EEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000777 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1288)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~i 543 (1288)
||||+||+|+|||||||.||.| .++++.+++.+.|.+.++++.||.|+.|.|||+|.+|||||||||+||||+|+|+||
T Consensus 586 Yv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI 664 (1381)
T KOG0054|consen 586 YVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI 664 (1381)
T ss_pred EeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE
Confidence 9999999999999999999987 567889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHH-HHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHHHHH
Q 000777 544 LLLDEATSALDAESEKV-VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 544 lllDEpts~lD~~~~~~-i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1288)
++||||+||+|+++.++ +.++|+.+.++||+|+|||.++.+++||+|++|++|+|++.|+++|+++. +..|.++....
T Consensus 665 YLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~~ 743 (1381)
T KOG0054|consen 665 YLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELAHEE 743 (1381)
T ss_pred EEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHhhcc
Confidence 99999999999998665 56678888899999999999999999999999999999999999999976 67777763222
Q ss_pred hhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCCC--CCCCcc
Q 000777 623 EANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGP--SQPTEE 700 (1288)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 700 (1288)
....+.+......+. . ...+. ...+.. ..... ...........+. .+.+++
T Consensus 744 ~~~~~~~~~~~~~~~-~---~~~~~-----~~~~~~-----------~~~~~-------~~~~~~~~~~~~~~~~~~ee~ 796 (1381)
T KOG0054|consen 744 ESEQEEEASEKDLES-G---ESSRE-----SESRSL-----------ESLSS-------EEEKSKDEKEEEDKLVQEEER 796 (1381)
T ss_pred chhhccccccccccc-c---ccccc-----hhhhhh-----------hhhcc-------cccccccccchhhHHHHHHHH
Confidence 111111000000000 0 00000 000000 00000 0000000000000 001112
Q ss_pred cCCchhhHhhhhhcCChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cch---hchHHHHHHHHHHHHHH
Q 000777 701 VAPEVPTRRLAYLNKPEIPVI--LAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELK---KDSRFWALIYLALGAGS 774 (1288)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~~ 774 (1288)
..+.+.+.-+..|.+...+++ .+.++..+....+.... .++-.+|.... ... .+..+|..+|.+++++.
T Consensus 797 ~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~-----~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~ 871 (1381)
T KOG0054|consen 797 ETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIAS-----NYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVAS 871 (1381)
T ss_pred hcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCcccccccCCCcchHHHHHHHHHHHH
Confidence 334444554444444322222 11122222222222222 22333333211 111 35678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 775 FLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAG 854 (1288)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~ 854 (1288)
.++..++.+.+...+.++++.||+.++++++++||+|||+ +|.|+|+|||++|++.+|..++..+..++..++.+++.
T Consensus 872 ~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 872 SLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH
Q 000777 855 LIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKY----EEASQVANDAVGSIRTVASFCAEEKVMQLYKK 930 (1288)
Q Consensus 855 ~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~ 930 (1288)
++++.+..|+.. ++++|+.+++.+++..| .+.+++.++.. +...+|++|+++|+.|||+|+.+++|.+++.+
T Consensus 950 ~~vi~~~~P~fl---i~~~pl~v~~~~~~~~Y-~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~ 1025 (1381)
T KOG0054|consen 950 LVVISYVTPWFL---IAIIPLGVIYYFVQRYY-LATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDE 1025 (1381)
T ss_pred HHHhhHHhHHHH---HHHHHHHHHHHHHHHHH-HHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHH
Confidence 999888877644 44455555554444444 44566666554 45589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 931 KCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE--DGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNK 1008 (1288)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1288)
..|.+.+..+-......+. +..+-++...+++..+...+. .+..+.|..-..+.+.......++.......+.+.
T Consensus 1026 ~~D~~~~~~f~~~~a~RWl---a~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn 1102 (1381)
T KOG0054|consen 1026 LIDENSRAFFLSISANRWL---AVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELEN 1102 (1381)
T ss_pred HhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999887755433222222 112222222222222222222 22255676666666777777778888888899999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCC--CccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHH
Q 000777 1009 AKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086 (1288)
Q Consensus 1009 ~~~~~~ri~~~~~~~~~~~~~~~~--~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKST 1086 (1288)
.+.++||+.++.+.+++.+...+. +++.++.+|+|+|+|++.+|.+. .++|||||||+|+|||||||||||||||||
T Consensus 1103 ~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSS 1181 (1381)
T KOG0054|consen 1103 NMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSS 1181 (1381)
T ss_pred cchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHH
Confidence 999999999999976662211111 34456688999999999999754 468999999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHH
Q 000777 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166 (1288)
Q Consensus 1087 L~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~ 1166 (1288)
|+++|+|+.+|.+|+|.|||+||.++++++||+++++|||||+||+||+|+||++. .+++|++||+|++.+++.++|.
T Consensus 1182 L~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~ 1259 (1381)
T KOG0054|consen 1182 LILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVS 1259 (1381)
T ss_pred HHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHh
Confidence 99999999999999999999999999999999999999999999999999999764 5899999999999999999999
Q ss_pred hhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh
Q 000777 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN 1246 (1288)
Q Consensus 1167 ~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~ 1246 (1288)
++|+|||++|.|+|.|||.||||++||||||||+++||+|||||+++|++|+..||++||+.|++||||+||||++||.+
T Consensus 1260 ~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd 1339 (1381)
T KOG0054|consen 1260 SLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD 1339 (1381)
T ss_pred hCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHhhcc
Q 000777 1247 ADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSA 1285 (1288)
Q Consensus 1247 ~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~~ 1285 (1288)
||||+|||+|+|+|+|+|.+|++++++.|++++.+....
T Consensus 1340 ~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~ 1378 (1381)
T KOG0054|consen 1340 SDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALS 1378 (1381)
T ss_pred cCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHh
Confidence 999999999999999999999999899998887765543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-155 Score=1563.53 Aligned_cols=1155 Identities=19% Similarity=0.247 Sum_probs=845.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1288)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1288)
+++.++.++..++..+.|++++.+++.+... ... ....... ..+++..++..++..-..+.....+.++...++..
T Consensus 304 ~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~-~~~--~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 379 (1622)
T PLN03130 304 WLGGFFKIGNDLSQFVGPLLLNLLLESMQNG-EPA--WIGYIYA-FSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAA 379 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccc--hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666667777788899988865432 110 1111111 11111111111111111111335667777777789
Q ss_pred HHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000777 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221 (1288)
Q Consensus 142 ~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~~ 221 (1288)
+++|+++++..++++. ++|+++|++++|++.+++.+. .+..++...+.+++++++++..-...+++.++++.+++.+.
T Consensus 380 i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~ 457 (1622)
T PLN03130 380 VFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQ 457 (1622)
T ss_pred HHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 899999999999999999874 34444444444444433333211111222222233334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301 (1288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1288)
.++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+.++++.+...+.....++...+..... .
T Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 535 (1622)
T PLN03130 458 TFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP--V 535 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 56677778888888889999999999999999999999999999999999998888777666655554433322221 1
Q ss_pred HHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCCc
Q 000777 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIR 381 (1288)
Q Consensus 302 ~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 381 (1288)
.+.++++|++++.++.+++|.+++++.++..+..|+..+...+..+..+.++++|+.++++.++..+... .......
T Consensus 536 ~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~---~~~~~~~ 612 (1622)
T PLN03130 536 LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN---PPLEPGL 612 (1622)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC---CcccCCC
Confidence 2345567888888999999999999988888888999888889999999999999999997654321111 1111113
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC-cEEEECCeeCCCCCHHHHhc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGINLKEFQLQWIRK 460 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~r~ 460 (1288)
+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+. +
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~-------------~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR-------------G 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc-------------C
Confidence 46999999999975445679999999999999999999999999999999999999999 999864 4
Q ss_pred ceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
+|+||+|+||+|++||||||.||.| .++++++++++.|+++++++.||+|++|.+||+|.+|||||||||+||||+|++
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999987 578899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHH
Q 000777 541 PRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1288)
|+||||||||||||+++++.+ .++++...+++|+|+|||+++.+..||+|++|++|+|+++|+|+|++++ ++.|.++.
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l~ 837 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKLM 837 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHHH
Confidence 999999999999999998876 4567777788999999999999999999999999999999999999976 67888877
Q ss_pred HHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCCCCCCCc
Q 000777 620 RLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTE 699 (1288)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1288)
..+....+..+ ...... ..+. . .. ....... .. ..... . ....... ........++
T Consensus 838 ~~~~~~~~~~~-~~~~~~-~~~~----~------~~-~~~~~~~--~~----~~~~~--~--~~~~~~~-~~~~~~~~e~ 893 (1622)
T PLN03130 838 ENAGKMEEYVE-ENGEEE-DDQT----S------SK-PVANGNA--NN----LKKDS--S--SKKKSKE-GKSVLIKQEE 893 (1622)
T ss_pred Hhccccccccc-cccccc-cccc----c------cc-ccccccc--cc----ccccc--c--ccccccc-cchhhhhHHH
Confidence 54321111100 000000 0000 0 00 0000000 00 00000 0 0000000 0000000011
Q ss_pred ccCCchhhHhhhhhcCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHH
Q 000777 700 EVAPEVPTRRLAYLNKP-E-IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLL 777 (1288)
Q Consensus 700 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 777 (1288)
+..+.+.+..+..|.+. . .+.+.+.++..++...+.....++++.+.+... .......+|.++|++++++..++
T Consensus 894 ~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~----~~~~~~~~~~~i~~~l~~~~~i~ 969 (1622)
T PLN03130 894 RETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGT----PKTHGPLFYNLIYALLSFGQVLV 969 (1622)
T ss_pred HhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cCCCchhHHHHHHHHHHHHHHHH
Confidence 11222334444444332 1 112112122222222222222233333332211 11122456777888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 778 SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLII 857 (1288)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 857 (1288)
.+++.+++.+.+.+++.++|++++++++++|++|||+ +++|+++||+++|++.++..++..+..++..++.+++.+++
T Consensus 970 ~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1047 (1622)
T PLN03130 970 TLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVL 1047 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999994 99999999999999999999999999999999998888888
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH
Q 000777 858 AFTASWQLALIILVMLPLIGVSGYTQMK---FMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934 (1288)
Q Consensus 858 ~~~~~~~l~lv~l~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~ 934 (1288)
+++++|...+ +++|+.+++.+.+.. ..+...+......+...+++.|++.|++|||+|+.++++.+.+.+..+.
T Consensus 1048 i~~~~~~~~~---~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~ 1124 (1622)
T PLN03130 1048 IGIVSTISLW---AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN 1124 (1622)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 8888774332 233333322222222 2222222233344567889999999999999999999888887777776
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGK---------ATFSDVFKVFFSLTMTAIGISQSSSFSSD 1005 (1288)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1288)
..+..........+...... ++...++++.+...+..+. .++|.++ .+......++..+......
T Consensus 1125 ~~~~~~~~~~~~~wl~~~l~---~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~l---s~~~~~~~~l~~l~~~~~~ 1198 (1622)
T PLN03130 1125 NIRFTLVNMSSNRWLAIRLE---TLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLL---SYALNITSLLTAVLRLASL 1198 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccccccchhhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 65543332221111111111 1111222223333333321 2233322 2334444556666667778
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCC--CccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCC
Q 000777 1006 SNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSG 1083 (1288)
Q Consensus 1006 ~~~~~~~~~ri~~~~~~~~~~~~~~~~--~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsG 1083 (1288)
.+....+.+|+.++++.+++.+...+. .++.++.+|.|+|+||+|+|++. .++||+|+||+|+|||+||||||||||
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSG 1277 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAG 1277 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCC
Confidence 899999999999999876654221111 11122456899999999999643 347999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhH
Q 000777 1084 KSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163 (1288)
Q Consensus 1084 KSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~ 1163 (1288)
||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||+++. +++|+|+|+||+.+++++
T Consensus 1278 KSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~ 1355 (1622)
T PLN03130 1278 KSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKD 1355 (1622)
T ss_pred HHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHH
Confidence 999999999999999999999999999999999999999999999999999999999873 689999999999999999
Q ss_pred HHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchh
Q 000777 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLST 1243 (1288)
Q Consensus 1164 ~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~t 1243 (1288)
||.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++|
T Consensus 1356 ~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~t 1435 (1622)
T PLN03130 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1435 (1622)
T ss_pred HHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHhhc
Q 000777 1244 IKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSS 1284 (1288)
Q Consensus 1244 i~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1284 (1288)
+++||||+||++|+|+|+|+|+||+++++|.|++|++.+..
T Consensus 1436 I~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1436 IIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 99999999999999999999999999767999999987654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-154 Score=1553.67 Aligned_cols=1153 Identities=19% Similarity=0.251 Sum_probs=848.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1288)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1288)
+.+.++.++..++..+.|++++.+++.+... ... .. ...+++++++..++..++.....+.....+.++...++..
T Consensus 304 ~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~-~~~-~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~ 379 (1495)
T PLN03232 304 WLGGIFKIGHDLSQFVGPVILSHLLQSMQEG-DPA-WV--GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAA 379 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccc-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777788999999875432 111 00 1111111111122222222111222345677777778889
Q ss_pred HHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHH
Q 000777 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIP---LLA 218 (1288)
Q Consensus 142 ~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p---~~~ 218 (1288)
+++|+++++..++++. ++|+++|++++|++.+++.+ ..+..++...+.+++++++ +.+.+++..++.++ +++
T Consensus 380 i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~---l~~~lg~~~l~~~~v~~l~~ 454 (1495)
T PLN03232 380 IFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVL---LYQQLGVASLFGSLILFLLI 454 (1495)
T ss_pred HHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999874 89999999999999999986 3333333333333332222 22223333322222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298 (1288)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1288)
.+..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+.++++.+...+.....++...+.....
T Consensus 455 pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 534 (1495)
T PLN03232 455 PLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23556677888888888899999999999999999999999999999999999999888887777666554433222211
Q ss_pred HHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccC
Q 000777 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILD 378 (1288)
Q Consensus 299 ~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 378 (1288)
..+.++++|++++.++.+++|.+++++.++..+..|+..+...+..+.++.++.+|+.++++.+++.+... ....
T Consensus 535 --~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~~~ 609 (1495)
T PLN03232 535 --VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PPLQ 609 (1495)
T ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CCcC
Confidence 12334677888888999999999999988888889998888889999999999999999998655422111 1111
Q ss_pred CCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH
Q 000777 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1288)
Q Consensus 379 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 458 (1288)
...+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+. .+
T Consensus 610 ~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~ 677 (1495)
T PLN03232 610 PGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VI 677 (1495)
T ss_pred CCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------Ee
Confidence 123479999999999754456899999999999999999999999999999999999999998763 24
Q ss_pred hcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
|++|+||+|+||||++||||||.||.+ .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||+|
T Consensus 678 ~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 678 RGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred cCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 679999999999999999999999986 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHH
Q 000777 539 KDPRILLLDEATSALDAESEKVVQE-ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1288)
++|+||||||||||||+++++.+.+ +++...+++|+|+||||++.+..||+|++|++|+|+++|+|+|++++ ++.|.+
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~ 835 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKK 835 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHH
Confidence 9999999999999999999987754 56767788999999999999999999999999999999999999976 678888
Q ss_pred HHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCCCCCC
Q 000777 618 LIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQP 697 (1288)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1288)
+++.+....+.++..+. . + ... . ....... . ... .... . .... .. ........
T Consensus 836 l~~~~~~~~~~~~~~~~-~--~-~~~---~------~~~~~~~--~--~~~-~~~~--~-----~~~~-~~-~~~~~~~~ 888 (1495)
T PLN03232 836 LMENAGKMDATQEVNTN-D--E-NIL---K------LGPTVTI--D--VSE-RNLG--S-----TKQG-KR-GRSVLVKQ 888 (1495)
T ss_pred HHHhccccccccccccc-c--c-ccc---c------ccccccc--c--ccc-cccc--c-----cccc-cc-chhhhhhH
Confidence 77654321111000000 0 0 000 0 0000000 0 000 0000 0 0000 00 00000000
Q ss_pred CcccCCchhhHhhhhhcCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-chhchHHHHHHHHHHHHHH
Q 000777 698 TEEVAPEVPTRRLAYLNKPEI--PVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDSRFWALIYLALGAGS 774 (1288)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 774 (1288)
+++..+.+.+..+..|.+... +.+...++..++....... ...+-..|..... ......+|.++|++++++.
T Consensus 889 e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~ 963 (1495)
T PLN03232 889 EERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVS-----SSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQ 963 (1495)
T ss_pred HHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHH
Confidence 111122334444444444322 2211111111111111111 1222222322111 1122457888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 775 FLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAG 854 (1288)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~ 854 (1288)
.++.+++.+++.+.+.+++.++|++++++++++|++||| ++++|+++||+++|++.++..++..+..++..++.+++.
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~ 1041 (1495)
T PLN03232 964 VAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLST 1041 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 489999999999999999999999999999988888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH
Q 000777 855 LIIAFTASWQLALIILVMLPLIGVSGYTQM---KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931 (1288)
Q Consensus 855 ~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~ 931 (1288)
++++++++|...+ +++|+.+++.+.+. +..+...+......+...+++.|++.|++|||+|+.++++.+++.+.
T Consensus 1042 ~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~ 1118 (1495)
T PLN03232 1042 FALIGTVSTISLW---AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKS 1118 (1495)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHH
Confidence 8877777653322 22333333222222 22222333334455667899999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----CHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000777 932 CEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE-DGKA----TFSDVF-KVFFSLTMTAIGISQSSSFSSD 1005 (1288)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1005 (1288)
.+...+..........+ ... .+..+...+.++.+...+. .+.+ .+..++ .++.+...+..++..+...+..
T Consensus 1119 ~~~~~~~~~~~~~~~~w-l~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~ 1195 (1495)
T PLN03232 1119 MDNNIRFTLANTSSNRW-LTI--RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASK 1195 (1495)
T ss_pred HHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666554432222211 111 1111112222233333333 2332 112222 2334444555677788888889
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCC--CccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCC
Q 000777 1006 SNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSG 1083 (1288)
Q Consensus 1006 ~~~~~~~~~ri~~~~~~~~~~~~~~~~--~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsG 1083 (1288)
.+....+.+|+.++++.+++.+...+. .++.++..|.|+|+||+|+|++. .++||+|+||+|+|||+||||||||||
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSG 1274 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAG 1274 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCC
Confidence 999999999999999876653321111 11122456889999999999643 357999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhH
Q 000777 1084 KSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163 (1288)
Q Consensus 1084 KSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~ 1163 (1288)
||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||+++. +++|+|+|+|++.+++++
T Consensus 1275 KSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a~l~~ 1352 (1495)
T PLN03232 1275 KSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERAHIKD 1352 (1495)
T ss_pred HHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999873 689999999999999999
Q ss_pred HHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchh
Q 000777 1164 FICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLST 1243 (1288)
Q Consensus 1164 ~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~t 1243 (1288)
+|.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++|
T Consensus 1353 ~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232 1353 VIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT 1432 (1495)
T ss_pred HHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHhhcc
Q 000777 1244 IKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSA 1285 (1288)
Q Consensus 1244 i~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~~ 1285 (1288)
+++||||+||++|+|+|+|+|+||+++++|.|++|++.+...
T Consensus 1433 i~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1433 IIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999999999999999998668999999877543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-149 Score=1512.47 Aligned_cols=1185 Identities=19% Similarity=0.220 Sum_probs=869.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 63 IGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142 (1288)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 142 (1288)
.++++.++..++....|++++.+++.+.....+ ......+++.++++.++.+++.....+.....+.++...++..+
T Consensus 321 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i 397 (1522)
T TIGR00957 321 MSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAP---DWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAV 397 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666777889988875432111 11111122223333334444443334445667888888999999
Q ss_pred HHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000777 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1288)
Q Consensus 143 ~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~~~ 222 (1288)
|+|+++++..+++.. ++|+++|++++|++++..... .+..+....+.+++++++++......+++.++++++++.+..
T Consensus 398 y~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~ 475 (1522)
T TIGR00957 398 YRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNA 475 (1522)
T ss_pred HHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 899999999999999988653 333333333333333333322222233444555556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1288)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1288)
++.+..++..++.++..+++.+.+.|.++||++||+|+||+.+.+++.+.++++.+...+......+.......... .
T Consensus 476 ~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~ 553 (1522)
T TIGR00957 476 VMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPF--L 553 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 77888888888889999999999999999999999999999999999999988887766655554443222111111 1
Q ss_pred HHHHHHHHHHHhh--cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCC
Q 000777 303 ALSVWYGGKLILE--EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1288)
Q Consensus 303 ~~~~~~g~~~v~~--~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 380 (1288)
+..+.++.+.+.. +.++.+.+++++.++..+..|+..+...+..+.++..+.+|+.++++.+++.+.........+..
T Consensus 554 ~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 633 (1522)
T TIGR00957 554 VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGE 633 (1522)
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCC
Confidence 1222344555553 56888989888877777788999999999999999999999999997654321110000000111
Q ss_pred cccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhc
Q 000777 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1288)
Q Consensus 381 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 460 (1288)
.+.|+++|++|+|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 634 ~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 699 (1522)
T TIGR00957 634 GNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------- 699 (1522)
T ss_pred CCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------
Confidence 2379999999999742 35799999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
+|+||+|+||+|++||+|||.||.+ .++++..++++.|++.+++..+|+|++|.+|++|.+|||||||||+||||+|++
T Consensus 700 ~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~ 778 (1522)
T TIGR00957 700 SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778 (1522)
T ss_pred EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999876 456777888888999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHH
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDR---IMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1288)
|+|+|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|++++.|+++++.++ ++.|.+
T Consensus 779 ~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~ 857 (1522)
T TIGR00957 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAE 857 (1522)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHH
Confidence 999999999999999999999998853 4567999999999999999999999999999999999999876 677877
Q ss_pred HHHHHhhcccccccccc-ccc-chhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCCC-
Q 000777 618 LIRLQEANKESEQTIDG-QRK-SEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGP- 694 (1288)
Q Consensus 618 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 694 (1288)
+...+......+...+. ... .....+.... ..............................................
T Consensus 858 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1522)
T TIGR00957 858 FLRTYAPDEQQGHLEDSWTALVSGEGKEAKLI-ENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEET 936 (1522)
T ss_pred HHHhhccccccccccccccccccccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccch
Confidence 76544321111000000 000 0000000000 0000000000000000000000000000000000000000000000
Q ss_pred CC---CCcccCCchhhHhhhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHH
Q 000777 695 SQ---PTEEVAPEVPTRRLAYLNKP-EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLAL 770 (1288)
Q Consensus 695 ~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 770 (1288)
.. .+++..+.+.+..+.+|.+. .++..++.++..++..+......++++.+.+.... ........+|..+|+++
T Consensus 937 ~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~--~~~~~~~~~~~~iy~~l 1014 (1522)
T TIGR00957 937 WKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMV--NGTQNNTSLRLSVYGAL 1014 (1522)
T ss_pred hhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCCCCcchHHHHHHHH
Confidence 00 00011122233333333322 22222222222222222222333333333322110 00112234566788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000777 771 GAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIST 850 (1288)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~ 850 (1288)
+++..++.++..++....+.++..++|++++++++++|++|||+ +++|+++||+++|++.++..++..+..++..++.
T Consensus 1015 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~ 1092 (1522)
T TIGR00957 1015 GILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFN 1092 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999994 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH
Q 000777 851 AAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKK 930 (1288)
Q Consensus 851 ~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~ 930 (1288)
+++.++++++.+|.++++++++++++++...++.+..+...+......+...+++.|++.|++|||+|+.++++.+++.+
T Consensus 1093 ~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~ 1172 (1522)
T TIGR00957 1093 VIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDL 1172 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHH
Confidence 99999888888887665554444444333333333333333444445567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 931 KCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV-EDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKA 1009 (1288)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1288)
..+...+..+.......+......++. .+++++.+...+ ..|.++.|.+..++.+...+..++..+...+...+..
T Consensus 1173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~ 1249 (1522)
T TIGR00957 1173 KVDENQKAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETN 1249 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887776554444333322222221 222333444444 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCC-CC-CCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHH
Q 000777 1010 KSAAASIFAIIDRESKIDPS-DE-SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTV 1087 (1288)
Q Consensus 1010 ~~~~~ri~~~~~~~~~~~~~-~~-~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL 1087 (1288)
..+.+|+.++.+.+++.+.. +. ..+..++..|.|+|+||+|+|+++ .++||+||||+|+|||+||||||||||||||
T Consensus 1250 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL 1328 (1522)
T TIGR00957 1250 IVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSL 1328 (1522)
T ss_pred HHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999766543211 11 111122456899999999999754 3479999999999999999999999999999
Q ss_pred HHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHh
Q 000777 1088 VSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICS 1167 (1288)
Q Consensus 1088 ~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~ 1167 (1288)
+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||++. ++++|+|+|+|++.++++++|.+
T Consensus 1329 ~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~~a~l~~~I~~ 1406 (1522)
T TIGR00957 1329 TLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALELAHLKTFVSA 1406 (1522)
T ss_pred HHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHHHHHHHHHcCcHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999854 36899999999999999999999
Q ss_pred hhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhc
Q 000777 1168 LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNA 1247 (1288)
Q Consensus 1168 lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~ 1247 (1288)
+|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++++.+|
T Consensus 1407 lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~ 1486 (1522)
T TIGR00957 1407 LPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDY 1486 (1522)
T ss_pred CccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHh
Q 000777 1248 DMIAVVKNGVIVEKGKHENLINIPDGFYASLIALH 1282 (1288)
Q Consensus 1248 DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~ 1282 (1288)
|||+|||+|+|+|+|+|+||+++ +|.|++|+++.
T Consensus 1487 DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1487 TRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred CEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 99999999999999999999997 79999999873
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-144 Score=1454.16 Aligned_cols=1167 Identities=17% Similarity=0.193 Sum_probs=861.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1288)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1288)
+..+++.++..++....|++++.+++.+... .. .......+++.++++.++.+++...+.+.....+.++...+...
T Consensus 247 ~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~ 323 (1560)
T PTZ00243 247 WWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD-NA--TWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNAL 323 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777888888888764321 11 11111112222333344445555445555566677777778888
Q ss_pred HHHHHHhCChhhhhc-cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000777 142 YLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1288)
Q Consensus 142 ~~~~ll~~~~~~f~~-~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~ 220 (1288)
+|+|+++++...+.. ..++|+++|++++|++.+.+++.. +..++...+.+++++++++.+..+.+++.++++++++.+
T Consensus 324 if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl 402 (1560)
T PTZ00243 324 IFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPL 402 (1560)
T ss_pred HHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999998876641 137899999999999999999854 444555666666655555554444677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1288)
..++.++..+..++.++..+++.+.+.|.++|||+||+++||+.+.+++.+.++++.+...+......+...+......+
T Consensus 403 ~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l 482 (1560)
T PTZ00243 403 NGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTL 482 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999999999999999999999999888777766665544443333222
Q ss_pred HHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc----cC-C----
Q 000777 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID----AY-D---- 371 (1288)
Q Consensus 301 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~----~~-~---- 371 (1288)
. ..+.++++.+..+.++++.+|+++.++..+..|+..+...+..+.++.++.+|+.++++.++... +. .
T Consensus 483 ~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~ 560 (1560)
T PTZ00243 483 M--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWRE 560 (1560)
T ss_pred H--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccc
Confidence 2 22345667778899999999999999988899999988899999999999999999997543100 00 0
Q ss_pred ---C-C--C------------------------------------------cccCCCcccEEEEeEEEECCCC-------
Q 000777 372 ---T-K--G------------------------------------------KILDDIRGDIELRDVYFSYPAR------- 396 (1288)
Q Consensus 372 ---~-~--~------------------------------------------~~~~~~~~~i~~~~v~~~y~~~------- 396 (1288)
. . . .......+.+.++|++|+++..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1560)
T PTZ00243 561 QREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVE 640 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0000011346778887765310
Q ss_pred ------------------------------CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Q 000777 397 ------------------------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1288)
Q Consensus 397 ------------------------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 446 (1288)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~ 720 (1560)
T PTZ00243 641 GGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE 720 (1560)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 12458999999999999999999999999999999999999999999874
Q ss_pred CeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
++|+||+|+||+|++||+|||.|+.+. +.+++.++.+.++++++++.+|+|++|.+|++|.+||||
T Consensus 721 -------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGG 786 (1560)
T PTZ00243 721 -------------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGG 786 (1560)
T ss_pred -------------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHH
Confidence 379999999999999999999998653 455677888888999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChh
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE-ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1288)
|||||+||||++++|+|||||||||+||+++.+.+.+ ++....+++|+|+|||+++.+..||+|++|++|++++.|+++
T Consensus 787 QkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 787 QKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSA 866 (1560)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999998887765 444455689999999999999889999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCccc
Q 000777 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD 685 (1288)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1288)
++++. +.|..+........+..+.....+. . ..+.... ........... ....... ....
T Consensus 867 ~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~------~~~~~~~~~~~-----~~~~~~~-----~~~~ 926 (1560)
T PTZ00243 867 DFMRT--SLYATLAAELKENKDSKEGDADAEV-A-EVDAAPG------GAVDHEPPVAK-----QEGNAEG-----GDGA 926 (1560)
T ss_pred HHHhC--hHHHHHHHhhccccccccccccccc-c-ccccccc------ccccccccccc-----ccccccc-----cccc
Confidence 99874 4566665432211110000000000 0 0000000 00000000000 0000000 0000
Q ss_pred ccCCCCCCCC-CCCcccCCchhhHhhhhhcCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHH
Q 000777 686 TALGEPAGPS-QPTEEVAPEVPTRRLAYLNKPEI--PVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRF 762 (1288)
Q Consensus 686 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1288)
......... ..+++..+.+.+..+..|.+... ...+..++..++..++.....+++ ..|... ....+...
T Consensus 927 -~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl-----~~w~~~-~~~~~~~~ 999 (1560)
T PTZ00243 927 -ALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWL-----SMWSTR-SFKLSAAT 999 (1560)
T ss_pred -ccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccc-ccCCCccc
Confidence 000000000 00011112233333333322111 111111111111111111111222 222211 11122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHH
Q 000777 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842 (1288)
Q Consensus 763 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~ 842 (1288)
|+.+|+++.++..++.+++.++....+.+...++|+++|++++++|++|||+ +++|+++|||++|++.++..++..+.
T Consensus 1000 ~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~l~ 1077 (1560)
T PTZ00243 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMSYL 1077 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 6677777777777777777777777888889999999999999999999994 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 000777 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY---TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFC 919 (1288)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~ 919 (1288)
.++..++.+++.++++++.+|.+.++ ++|+.+++.+ .+.+..+...+......+...+++.|++.|++|||+|+
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~~~~~---~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~ 1154 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPFVLVA---LVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYG 1154 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCc
Confidence 99999999999988888888744333 3333333322 22233333333334455667899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcCHHHHHHHHHHHHHHHHHHH
Q 000777 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR--LVEDGKATFSDVFKVFFSLTMTAIGIS 997 (1288)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--lv~~g~~~~~~~~~~~~~~~~~~~~~~ 997 (1288)
.++.+.++|.+..+...+..+.......+......++..+...++.+++.. +...+.+++|.+..++.+...+..++.
T Consensus 1155 ~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~ 1234 (1560)
T PTZ00243 1155 KAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLN 1234 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888777665554444444444433333333333333 333455788887777777788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-------------------------CC-Cc---cccCCCccEEEEEE
Q 000777 998 QSSSFSSDSNKAKSAAASIFAIIDRESKIDPSD-------------------------ES-GT---ILEDVKGEIELHHV 1048 (1288)
Q Consensus 998 ~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~-------------------------~~-~~---~~~~~~g~I~~~nV 1048 (1288)
.+......++..+.+.+|+.++++..++.+.+. +. .+ +.++..|.|+|+||
T Consensus 1235 ~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nV 1314 (1560)
T PTZ00243 1235 WLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGV 1314 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEE
Confidence 999999999999999999999986433211000 00 00 11124578999999
Q ss_pred EEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCC
Q 000777 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1288)
Q Consensus 1049 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~ 1128 (1288)
+|+|++. .++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||
T Consensus 1315 sf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp 1393 (1560)
T PTZ00243 1315 QMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP 1393 (1560)
T ss_pred EEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCC
Confidence 9999753 356999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC-CCEEEEe
Q 000777 1129 VLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD-PKILLLD 1207 (1288)
Q Consensus 1129 ~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~-p~ILlLD 1207 (1288)
+||+|||||||+++ .+++|+|||+||+.++++++|.++|+||||.|||+|.+|||||||||||||||+++ |+|||||
T Consensus 1394 ~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD 1471 (1560)
T PTZ00243 1394 VLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD 1471 (1560)
T ss_pred ccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 99999999999875 37899999999999999999999999999999999999999999999999999996 8999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHhh
Q 000777 1208 EATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHS 1283 (1288)
Q Consensus 1208 EaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~ 1283 (1288)
||||+||++||+.|+++|++.+++||+|+||||++++++||+|+||++|+|+|+|+|+||+++++|.|++|++.+.
T Consensus 1472 EATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1472 EATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred CCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999877899999998764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-141 Score=1421.75 Aligned_cols=1176 Identities=17% Similarity=0.222 Sum_probs=833.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 68 AIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTIL 147 (1288)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 147 (1288)
.++..++....|++++.+++.+...... .......+++.++++.++..++.....+.....+.++-..+...+|+|++
T Consensus 89 ~~~~~~~~~~~P~ll~~li~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 166 (1490)
T TIGR01271 89 LYFGEATKAVQPLLLGRIIASYDPFNAP--EREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL 166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556677888888875321111 01111122223333344444555445555555666666666667799999
Q ss_pred hCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 148 RQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIM 227 (1288)
Q Consensus 148 ~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~~~~~~~~ 227 (1288)
+++...+++. ++|+++|++++|++.+.+.+..... +....+.+++++++++....+.+++.++++++++.+..++.++
T Consensus 167 ~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~~~-~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 167 KLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALAHF-VWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred hCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999864 8999999999999999998765433 3333443444444444434445677777888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 228 ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVW 307 (1288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (1288)
+.+..++.++..+++.+.+.|.++|||+||+|+||+.+.+++.+.++.+.+...+......+...+..+.. ..+.++.
T Consensus 245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 322 (1490)
T TIGR01271 245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887777665544333222222 2233445
Q ss_pred HHHHHHhhcCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCCcccEEE
Q 000777 308 YGGKLILEEGYNGGQVVNVMVAVLTGSMSLG-EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIEL 386 (1288)
Q Consensus 308 ~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 386 (1288)
++++.+.. .++.+.+|+++.++..+..++. .+...+..+.++.++.+|+.++++.++..+. . . ......+++
T Consensus 323 f~~y~~~~-~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~-~---~--~~~~~~i~~ 395 (1490)
T TIGR01271 323 VVPYALIK-GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL-E---Y--NLTTTEVEM 395 (1490)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-c---c--cCCCCceEE
Confidence 55665554 4678888888877766666764 5666788899999999999999976443111 1 0 011235999
Q ss_pred EeEEEECCCCC-------------------------------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcC
Q 000777 387 RDVYFSYPARP-------------------------------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 387 ~~v~~~y~~~~-------------------------------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+|++|.|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999995310 13689999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc
Q 000777 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1288)
Q Consensus 436 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 515 (1288)
++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+.++..++++.|++.+++..+|+|++|.
T Consensus 476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~ 541 (1490)
T TIGR01271 476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTV 541 (1490)
T ss_pred CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhcccccccc
Confidence 999999999998 6999999999999999999999865 44556777788888999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEecCchhhhhcCEEEEEe
Q 000777 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE-ALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1288)
Q Consensus 516 ~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~ 594 (1288)
+|++|.+|||||||||+||||+|++|+|+|||||||+||+++++.+.+ ++.++.+++|+|+|||+++.+..||+|++|+
T Consensus 542 vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~ 621 (1490)
T TIGR01271 542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH 621 (1490)
T ss_pred ccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 4677778899999999999998899999999
Q ss_pred CCEEeEecChhHHhcCCCchHHHHHHHHhhcccc--ccc--cccc------ccchhh----hhhhhccccccccc-cccc
Q 000777 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKES--EQT--IDGQ------RKSEIS----MESLRHSSHRMSLR-RSIS 659 (1288)
Q Consensus 595 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~------~~~~~~----~~~~~~~~~~~~~~-~~~~ 659 (1288)
+|++++.|+++++.+. ++.|...+.......+. +.. ...+ ...+.. .+............ ....
T Consensus 622 ~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1490)
T TIGR01271 622 EGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKR 700 (1490)
T ss_pred CCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999875 45565554311100000 000 0000 000000 00000000000000 0000
Q ss_pred CCC---C-C-C------------C----CCCccc-c---------ccc-----CCCCCC------------c-------c
Q 000777 660 RGS---S-I-G------------N----SSRHSI-S---------VSF-----GLPSGQ------------F-------A 684 (1288)
Q Consensus 660 ~~~---~-~-~------------~----~~~~~~-~---------~~~-----~~~~~~------------~-------~ 684 (1288)
... . . . . ...... . ... ..+..+ . .
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1490)
T TIGR01271 701 KQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMT 780 (1490)
T ss_pred cccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 000 0 0 0 0 000000 0 000 000000 0 0
Q ss_pred cc--c------------------------CCCC----C-CCCC-----C--------------CcccCCchhhHhhhhhc
Q 000777 685 DT--A------------------------LGEP----A-GPSQ-----P--------------TEEVAPEVPTRRLAYLN 714 (1288)
Q Consensus 685 ~~--~------------------------~~~~----~-~~~~-----~--------------~~~~~~~~~~~~~~~~~ 714 (1288)
.. . ...+ . ..+. + ++...+.+.+..+..|.
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~ 860 (1490)
T TIGR01271 781 HSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYI 860 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHH
Confidence 00 0 0000 0 0000 0 00001122233333332
Q ss_pred CCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-CC--Ccc-c---------hhchHHH-HHHHHHHHHHHHH
Q 000777 715 KPE--IPVILAGTIAAMANGVILPIYGLLISSVIET--FF-KP--PHE-L---------KKDSRFW-ALIYLALGAGSFL 776 (1288)
Q Consensus 715 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~--~~~-~---------~~~~~~~-~~~~~~l~~~~~~ 776 (1288)
+.. +..+++.++..++..+...+..+++..+... .+ .. ... . .....+| +.+|++++++..+
T Consensus 861 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1490)
T TIGR01271 861 TTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLA 940 (1490)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 211 1111111111111112222222222211110 00 00 000 0 0011223 3445555555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 777 LSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI 856 (1288)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~ 856 (1288)
+.+++.+++.+.+.+.+.++|.+++++++++|++||++ +++|+++|||++|++.++..++..+..++..++.+++.++
T Consensus 941 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~ 1018 (1490)
T TIGR01271 941 LGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIF 1018 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHH
Q 000777 857 IAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPM 936 (1288)
Q Consensus 857 ~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~ 936 (1288)
++++++|++++++++++.++++...++.+..+...+......+...+++.|++.|+.|||+|+.++++.++|.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99998887655333322222222222222233333333445566789999999999999999999999999999998765
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 937 KTGIRQGMVSGGGFGASFFLLFAFYA--ASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAA 1014 (1288)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1288)
+..+.......+......++..+... +.++++.. .++.|.+..++.+...+..++..+...+..++..+.+.+
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443332222221111111111111 11122222 223333333344445555667777778888999999999
Q ss_pred HHHHHhcccCCCCCCCC----------------CCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEc
Q 000777 1015 SIFAIIDRESKIDPSDE----------------SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVG 1078 (1288)
Q Consensus 1015 ri~~~~~~~~~~~~~~~----------------~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG 1078 (1288)
|+.++.+.+++.....+ ..++.++..|.|+|+||+|+|++. .++||+||||+|+|||+|||||
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvG 1252 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLG 1252 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEEC
Confidence 99999976654321110 001112356889999999999753 4689999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHH
Q 000777 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158 (1288)
Q Consensus 1079 ~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~ 1158 (1288)
|||||||||+++|+|+|+ ++|+|+|||+||++++++.+|++|+||||||+||+||||+||++. .+++|+++|+||+.
T Consensus 1253 rSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1253 RTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--EQWSDEEIWKVAEE 1329 (1490)
T ss_pred CCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc--cCCCHHHHHHHHHH
Confidence 999999999999999997 799999999999999999999999999999999999999999865 36899999999999
Q ss_pred hchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q 000777 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVA 1238 (1288)
Q Consensus 1159 a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~Ia 1238 (1288)
++++++|.++|+||||+|||+|.+||||||||||||||||++|+|||||||||+||++||+.|++.|++.+++||||+||
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHhh
Q 000777 1239 HRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHS 1283 (1288)
Q Consensus 1239 Hrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~ 1283 (1288)
||++++.+||||+||++|+|+|+|+|++|+++ +|.|++|++.+.
T Consensus 1410 HRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred cCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 99999999999999999999999999999985 899999998764
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-110 Score=975.15 Aligned_cols=574 Identities=38% Similarity=0.618 Sum_probs=540.7
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1288)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 785 (1288)
.+++++.+.+++++++..+.++.++......+.+.+.+.+++.++.. .+......-....+.++.++.+++.+++.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-DDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999988888888888888899999888761 11112222334566677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000777 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1288)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 865 (1288)
..+++++..++|..+|+++++++++|||. |.+|++++|+++|...+.+.++.++...+.+++..++++++|+++||.+
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 99999999999999999999999999995 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1288)
Q Consensus 866 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1288)
+++.++.+|++.++..++.++.++.+++.+...++++....|.+.+++|||+|+.|++..++|.+..++..+...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000777 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1288)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1025 (1288)
.+.+++...+........++++|++++..|.+|.|++..++++...+..++..+..++.++.++..+.+|++++++++|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEEC
Q 000777 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1288)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1105 (1288)
.++. ....+ ....|.|+|+||+|+||.+|+.|||+|+||+|+|||+||+||||||||||+++||+|||+|++|+|++|
T Consensus 451 i~~~-G~~~p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 451 IPLT-GTLAP-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CCCC-Ccccc-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 7654 22121 257899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCCh
Q 000777 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1106 G~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1185 (1288)
|+||++++..+||++||+|.|||+||++||+|||.||.+ .+++|||.+|+++|++||||.++|+||||.|||+|.+|||
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 999999999999999999999999999999999999964 8999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~ 1265 (1288)
||||||||||||+|||+||||||||||||+++|..||++|.+..+++|||+|||||+||++||+|+|+++|+|+|.|+|+
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHhhcc
Q 000777 1266 NLINIPDGFYASLIALHSSA 1285 (1288)
Q Consensus 1266 eLl~~~~g~y~~L~~~~~~~ 1285 (1288)
||+++++|.|++|+++|...
T Consensus 688 eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 688 ELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred HHhhCcccHHHHHHHHhccc
Confidence 99999889999999998644
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-106 Score=945.15 Aligned_cols=575 Identities=39% Similarity=0.644 Sum_probs=540.7
Q ss_pred CccHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000777 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1288)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 122 (1288)
...+++++.|+++.++ ++..+.++.++......+.|.+.|+++|...... .....+...+..+.++.++++++.++
T Consensus 132 ~~~~~rl~~l~~~~~~-~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~---~~~~~~~~~~~~l~~l~~~~a~~~~~ 207 (716)
T KOG0058|consen 132 HTLLKRLLGLLKPEWK-WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD---DSADALKRACTILLGLFLIGALANAI 207 (716)
T ss_pred hhHHHHHHHHhchhHH-HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999987644 5667777777777778889999999999876411 12344556677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1288)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (1288)
+.+++.++++++..++|..+|+++++++++|||.+ ++|+++||+++|+..+.+.++..+...+.++.+.++++++|+++
T Consensus 208 r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~ 286 (716)
T KOG0058|consen 208 RGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL 286 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 99999999999999999999999999999999985 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 000777 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1288)
Q Consensus 203 ~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1288)
+|.|++++++.+|+++++..+++++.++..++.|++.++++.+.+|.+++|||||+|+.|+.+.+||.+..++..+...|
T Consensus 287 S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k 366 (716)
T KOG0058|consen 287 SWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK 366 (716)
T ss_pred hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000777 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1288)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 362 (1288)
.....+.+.+...+...+....++++|++++.+|.++.|.+.+|++|......++..+...+..++++..|++|+||++|
T Consensus 367 ~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~d 446 (716)
T KOG0058|consen 367 EAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMD 446 (716)
T ss_pred HHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 000777 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1288)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 442 (1288)
.+|.++... ...+....|.|+|+||+|+||.+|+.+||+|+||+|+|||+||+|||||+||||++++|.++|+|++|+
T Consensus 447 r~P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 447 RKPRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred cCCCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 999877542 122225789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCC
Q 000777 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1288)
Q Consensus 443 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 522 (1288)
|.+||+||+++++.++|++||+|.|||.||++||+|||.||.++.++++++.|++++++|+||..+|+||||.|||+|.+
T Consensus 525 IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 525 ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEec
Q 000777 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 523 LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 602 (1288)
|||||||||||||||++||.||||||+|||||+++|..++++|.++.+++|||+|+|||+++++||+|+|+++|+++|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHhh
Q 000777 603 THSKLVEDPEGAYSQLIRLQEA 624 (1288)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~ 624 (1288)
+|+||++.+++.|.++++.|..
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhcc
Confidence 9999999988999999987754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-99 Score=936.76 Aligned_cols=579 Identities=46% Similarity=0.782 Sum_probs=546.5
Q ss_pred CCccHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 000777 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1288)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 121 (1288)
.+.++++++++.+| ++..++++++++++.|+..|+..++++.++..|... +.+........+++++++++++.+++.+
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~-~~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP-DDDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999987 677889999999999999999999999999988643 2222222333478889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1288)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 201 (1288)
++++++.+.|+++..|+|..+|+++++++++|||...++|.|.+|+.+|...++..+.+.+..+++++..++.+++++|+
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997666699999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 000777 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1288)
Q Consensus 202 ~~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1288)
++|++++++++..|++++......+++.....+..+.+.+......|++.+||||++|+.|+++.+.|.+..+...+...
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~ 885 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF 885 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000777 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1288)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l 361 (1288)
+...+.++..++.+.+.++.+++.+|+|++++.+|.+++.+++.++..+......+++.....+.+.+|..|+.++|+++
T Consensus 886 ~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~ 965 (1228)
T KOG0055|consen 886 KRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEIL 965 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred ccCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 000777 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1288)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 441 (1288)
+++|.++..++.+...+..+|+|+++||+|+||++|+.+||+|+||+|++||++||||||||||||++.+|.|+|+|++|
T Consensus 966 dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen 966 DRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG 1045 (1228)
T ss_pred cCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 99998776554444456678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCC
Q 000777 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1288)
Q Consensus 442 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 521 (1288)
.|.|||+|++++++++||++||.|.|+|.||++||||||+||.+..+.+++.+|++.+++|+||.+||+||||.+||+|.
T Consensus 1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred eEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 99999999999999999999999999999999999999999966689999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEe
Q 000777 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1288)
Q Consensus 522 ~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 601 (1288)
+||||||||||||||++|||+||||||+|||||.++|+.+|++|++.+.+||+|+|+|||+++++||.|+|+++|+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHh
Q 000777 602 GTHSKLVEDPEGAYSQLIRLQE 623 (1288)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~ 623 (1288)
|+|++|++. +|.|.+|++.|.
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhcc
Confidence 999999995 899999987664
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-94 Score=882.04 Aligned_cols=568 Identities=32% Similarity=0.468 Sum_probs=519.6
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 786 (1288)
..+++....++++.+.-.++.+++..++..+.+++...++|.+.... ...........+++++++..++.+++.+++.
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~--~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA--SRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666667777777777765321 1222333445566677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000777 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1288)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 866 (1288)
+++.++..++-.++|+|++++|++||.+ +++|++++|+. |++.++.+++......+.++.++++.++++++++|+++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 89999999985 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1288)
Q Consensus 867 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1288)
+++++.+|++++..++..+++++..++.....++..+.+.|++.|++|||+.+.|.++..+|++...+..+...+.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000777 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1288)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1026 (1288)
.....+..++..+..++++|+|+++|.+|.+|+|+++++.+....+..|+.++.+++.++++...+.+|+.++++.+++.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECC
Q 000777 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1288)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1106 (1288)
+.+.. ....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++||
T Consensus 457 ~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 457 EGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred ccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 43221 12345578999999999999855 45799999999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChh
Q 000777 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186 (1288)
Q Consensus 1107 ~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1186 (1288)
+|+.++++..+|++|+|||||++||+|||||||+++. +++++|++++||+.+++|+||.++|+||||+|||+|.+||||
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 9999999999999999999999999999999999984 588999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhh
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
|||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|+|+|+|+|+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHhh
Q 000777 1267 LINIPDGFYASLIALHS 1283 (1288)
Q Consensus 1267 Ll~~~~g~y~~L~~~~~ 1283 (1288)
|++. +|.|++++++|.
T Consensus 694 ll~~-~g~y~~l~~~q~ 709 (709)
T COG2274 694 LLAQ-GGLYARLYQQQE 709 (709)
T ss_pred HHHh-cChHHHHHhccC
Confidence 9997 999999998873
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-90 Score=846.44 Aligned_cols=568 Identities=31% Similarity=0.486 Sum_probs=520.0
Q ss_pred cHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1288)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 124 (1288)
.+..++....+++. .+.-.++.+++.++...+.|++...++|...... ..+.+....+.++++++..+++.+++.
T Consensus 141 ~~~~f~~~~~~~~~-~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~----~~~tL~vl~ig~~~~~l~~~~l~~lr~ 215 (709)
T COG2274 141 GLSWFIPLLFKYRR-LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA----SRSTLTVLAIGLLLAALFEALLRLLRT 215 (709)
T ss_pred chHhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333 3334444555666666677778888999876442 234566677778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1288)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1288)
++..+.+.|+...+-.++++|++++|++||+++ ++|++++|+. |.+.|+++++..+...+..+..+++.+++|++++|
T Consensus 216 ~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~ 293 (709)
T COG2274 216 YLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSW 293 (709)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 9999999995 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1288)
Q Consensus 205 ~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1288)
.+++++++.+|++++...++.+.+++..++.....++.++++.|+++|+++||+.+.|.++..+|++...+..+...+..
T Consensus 294 ~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~ 373 (709)
T COG2274 294 KLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000777 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1288)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 364 (1288)
........+..++..++.++++|+|+++|.+|.+|.|.++++.+....+..|+..+...+..++.+..+.+|+.++++.+
T Consensus 374 ~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~ 453 (709)
T COG2274 374 KLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTP 453 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999888889999999999999999999999999999999999888889999999999999999999999999999998
Q ss_pred CCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 000777 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1288)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~ 444 (1288)
+|.+... .....+...|+|+++||+|+|+.+ ++++|+|+||+|++||++||||+||||||||+|+|.|+|+|++|+|+
T Consensus 454 ~E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~ 531 (709)
T COG2274 454 PEQEGDK-TLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 (709)
T ss_pred ccccccc-ccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 8754322 123456667999999999999754 35799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCC
Q 000777 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1288)
Q Consensus 445 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 524 (1288)
+||.|++++++..+|++||||+||+.||+|||+|||+++.|+.+++++.+||+.+++++||.++|.||+|.+||+|.+||
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LS 611 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecCh
Q 000777 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 525 gGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 604 (1288)
||||||++|||||+++|+||||||||||||+++|+.|.+.|.++.+++|+|+||||++++++||||+||++|+|+++|+|
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHH
Q 000777 605 SKLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1288)
+|+++. +|.|.++++.|
T Consensus 692 ~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 692 EELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred HHHHHh-cChHHHHHhcc
Confidence 999998 89999988654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-86 Score=826.45 Aligned_cols=554 Identities=37% Similarity=0.583 Sum_probs=494.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRI 796 (1288)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 796 (1288)
.+ .+..+.+..++...+....+++++.+++.... .......+..+++++.++..++.++..++..+.+.+...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA----DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 55556666666666666677777777776651 11122233444555566777888888888888899999999
Q ss_pred HHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000777 797 RSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLI 876 (1288)
Q Consensus 797 r~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~ 876 (1288)
|.++|+++++.|++||++ ++.|++++|+++|++.++..+......+...++.+++.+++++..+|.+++++++..|++
T Consensus 88 r~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 88 RRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999995 789999999999999999999998666666788889999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000777 877 GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956 (1288)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1288)
.+...+..++.++..+..++..++..+.+.|.+.|+++||+|+.++...+++.+..+...+...+..............+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777766778888888889999999999999999999999999999999999988888888777777777888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccc
Q 000777 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL 1036 (1288)
Q Consensus 957 ~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~ 1036 (1288)
..+...+.+++|..++..+.+++|.+..++.+......++..+.........+..+.+|++++++.+++....+.. .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~ 322 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---L 322 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---C
Confidence 8888999999999999999999999999999999999999999999999999999999999999986653322211 2
Q ss_pred cCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH
Q 000777 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1288)
Q Consensus 1037 ~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~ 1116 (1288)
....++|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+||++++.++
T Consensus 323 ~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 323 KDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHH
Confidence 234577999999999974 357999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1117 lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
||++|++|||||+||+|||+|||++|. ++++|||+++|++.|+++|||.++|+||||.|||+|.+||||||||||||||
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~-~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGR-PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999999995 4699999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHH
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~ 1276 (1288)
++++|||||||||||+||++||+.|++++++..++||+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|+
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~ 558 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYA 558 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999997 99999
Q ss_pred HHHHHhhc
Q 000777 1277 SLIALHSS 1284 (1288)
Q Consensus 1277 ~L~~~~~~ 1284 (1288)
+||+.|..
T Consensus 559 ~l~~~~~~ 566 (567)
T COG1132 559 RLYQAQGG 566 (567)
T ss_pred HHHHHhhc
Confidence 99998864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-86 Score=829.12 Aligned_cols=569 Identities=23% Similarity=0.302 Sum_probs=484.3
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 786 (1288)
+++++.+.+++++.++.+++.+++...+....++++..+++.+...... ......+..+++++.++..++.+++.++..
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888888888888865421111 111223344455566677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000777 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1288)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 866 (1288)
+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 488999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1288)
Q Consensus 867 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1288)
+++++++|+.+++.....+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777777778888888899999999999999999999999999999999998888877776665
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV---------FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017 (1288)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 1017 (1288)
.....+...+..+...++.++++..+ .|.+++|.+ +.++.+...+..|+..+..+.....++..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444444434434444333 377777653 22223444566789999999999999999999999
Q ss_pred HHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC
Q 000777 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1097 (1288)
++++.+++.+... ....+....+.|+|+||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+| |
T Consensus 326 ~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 326 TFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9998654322111 10111112457999999998863 357999999999999999999999999999999999999 9
Q ss_pred CCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhcccccccc
Q 000777 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVG 1177 (1288)
Q Consensus 1098 ~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vg 1177 (1288)
++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+|. ++++|||+++|++.+++++||.++|+||||.||
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999984 479999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCE
Q 000777 1178 ERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGV 1257 (1288)
Q Consensus 1178 e~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1257 (1288)
|+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+||++|+
T Consensus 481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EEEecChhhhhcCCCcHHHHHHHHhhcc
Q 000777 1258 IVEKGKHENLINIPDGFYASLIALHSSA 1285 (1288)
Q Consensus 1258 Ive~Gt~~eLl~~~~g~y~~L~~~~~~~ 1285 (1288)
|+|.|+|+||+++ +|.|+++++.|.+.
T Consensus 561 i~e~G~~~eL~~~-~~~y~~l~~~q~~~ 587 (588)
T PRK11174 561 IVQQGDYAELSQA-GGLFATLLAHRQEE 587 (588)
T ss_pred EeecCCHHHHHhc-chHHHHHHHHhhcC
Confidence 9999999999996 89999999988753
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-85 Score=754.24 Aligned_cols=552 Identities=28% Similarity=0.399 Sum_probs=494.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 724 GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEK 803 (1288)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 803 (1288)
..+.+++.++......++++..+..++... .......+...++++.+++.++.+.+..+..+++.++...+|..++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQ--LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777888777776432 123344556677778888999999999999999999999999999999
Q ss_pred HHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000777 804 VIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883 (1288)
Q Consensus 804 ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~ 883 (1288)
+.+.++.|-. ..++|+..+.+...++.++.++..+++.++.+.+..+..++.+++++|.-++++++++|++.+++++.
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 48899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000777 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAA 963 (1288)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1288)
....+..+++....+...++++.+.++|+.|+|.|+..+...++..+..++..+..++..+......++..++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888777777766666776666655
Q ss_pred H-HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCcc
Q 000777 964 S-FYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042 (1288)
Q Consensus 964 ~-~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 1042 (1288)
+ +++|..++..|.+++...+.++.....+..|+..++++++....+..+.+.++.+.+.+.+..+.............+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 4 455556555589999998888888999999999999999999999999999999998776543322211112223345
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
++++|++|+||+. +++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||++++
T Consensus 321 i~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 6677999999864 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCC
Q 000777 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202 (1288)
Q Consensus 1123 ~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ 1202 (1288)
||||+|++|+|||||||.+++ ++.+|+++++|++.+++.+|+.. |+|+||++||+|.+|||||+||+++||||+++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~-~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLAR-PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeCCCCccccccHHHHhhccC-CcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999985 47999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHh
Q 000777 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALH 1282 (1288)
Q Consensus 1203 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~ 1282 (1288)
++|||||||+||.|||+.|++.|.+.++++|||+||||++.+++||+|+|||+|+++|.|+|++|.++ +|.|++|+.+|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 89999999988
Q ss_pred hc
Q 000777 1283 SS 1284 (1288)
Q Consensus 1283 ~~ 1284 (1288)
..
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 64
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-85 Score=830.83 Aligned_cols=564 Identities=34% Similarity=0.495 Sum_probs=500.4
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1288)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 785 (1288)
..++++.+.++.++.+...++..++..+.....++++..+++.+....+ .........+++++.++..++.+++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777888888888887653211 11111223344455566778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000777 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1288)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 865 (1288)
.+++.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.+
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999994 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1288)
Q Consensus 866 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1288)
++++++.+|+.+++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888889999999999999999999999999999999999998888877777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000777 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1288)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1025 (1288)
..........+..+..++++++|.+++..|.+++|.++++..+...+..++..+.......+++..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66666666677777777888999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEEC
Q 000777 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1288)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1105 (1288)
.+.... ..+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 464 ~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 464 IPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred CCCCCC--CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 332111 112234578999999999986655689999999999999999999999999999999999999999999999
Q ss_pred CeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCCh
Q 000777 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1106 G~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1185 (1288)
|+|+++++.+++|++|+||||||++|+|||||||.++. ++++|+++++|++.+++++++.++|+||||.+||+|.+|||
T Consensus 542 g~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 99999999999999999999999999999999999984 46899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~ 1265 (1288)
|||||||||||++++|+|||||||||+||+++|+.|++ ....+++|+|+||||+++++.||+|+||++|+|+|.|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999999999 3345789999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHH
Q 000777 1266 NLINIPDGFYASLI 1279 (1288)
Q Consensus 1266 eLl~~~~g~y~~L~ 1279 (1288)
||+++ +|.|++|+
T Consensus 699 eL~~~-~~~y~~lv 711 (711)
T TIGR00958 699 QLMED-QGCYKHLV 711 (711)
T ss_pred HHHhC-CCchHhcC
Confidence 99997 78999874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-84 Score=811.50 Aligned_cols=568 Identities=22% Similarity=0.296 Sum_probs=483.8
Q ss_pred cHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1288)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 124 (1288)
.++++++|.+++++ .+++++++.++..++.+..|++++.++|...... . ....+..++..++++.++.+++.+++.
T Consensus 9 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (588)
T PRK11174 9 LTRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIEN-I--PREALLPPFILLILLFVLRALLAWLRE 84 (588)
T ss_pred hhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888877654 4566777788888888899999999999754211 1 112233334445556677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1288)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1288)
++....+.++..++|.++++|++++|+++|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 85 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (588)
T PRK11174 85 RVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINW 163 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975 9999999999999999999998899999898888989999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1288)
Q Consensus 205 ~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1288)
.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK11174 164 AAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVL 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888889999999999999999999999999999999999998888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQV---------VNVMVAVLTGSMSLGEASPCLSAFGAGQAAAF 355 (1288)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ 355 (1288)
........+..++..+..++++++++..+ .|.++.|.+ +.++.+......|+..+...+..+..+..+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 322 (588)
T PRK11174 244 RMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAE 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555544444444444555443 377777754 11122334456788888888999999999999
Q ss_pred HHHHHhccCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcC
Q 000777 356 KMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 356 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
|+.++++.+++.+... ....+....+.|+++||+|.|++ ++++|+|+||+|+||+++|||||||||||||+++|+|+
T Consensus 323 ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 323 SLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999998755322111 10111112357999999987753 35799999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc
Q 000777 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1288)
Q Consensus 436 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 515 (1288)
| |++|+|++||+|+++++.+++|++|+||||+|+||++||+|||++|.|++++++++++++.++++++++++|+||||.
T Consensus 400 ~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 400 L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC
Q 000777 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1288)
Q Consensus 516 ~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 595 (1288)
+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CEEeEecChhHHhcCCCchHHHHHHHHh
Q 000777 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1288)
Q Consensus 596 G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1288)
|+++++|+|+||+++ ++.|++++..|.
T Consensus 559 G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 559 GQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred CeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 999999999999987 789999987654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-84 Score=824.71 Aligned_cols=555 Identities=26% Similarity=0.328 Sum_probs=495.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 714 NKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLI 793 (1288)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 793 (1288)
.++.++.+...++.+++..++....++++..+++.+....+ ......+.+.++++.++..++.+++.++..+++.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (686)
T TIGR03797 131 LRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMD 208 (686)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666777777777777788888877653211 1112223444555666778889999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000777 794 QRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873 (1288)
Q Consensus 794 ~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~ 873 (1288)
.++|.++|++++++|++||+. +++|++++|++ |++.++..+...+...+..++.++++++++++++|++++++++++
T Consensus 209 ~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 285 (686)
T TIGR03797 209 ASLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA 285 (686)
T ss_pred HHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 88999999997 799999999998888888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000777 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1288)
Q Consensus 874 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1288)
|+.+++.++..+..++..++..+...+..+.+.|+++|+++||+++.|+++.++|.+..++..+...+..........+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (686)
T TIGR03797 286 LVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFN 365 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888888888888999999999999999999999999999999999999999999888888877788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC
Q 000777 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1288)
Q Consensus 954 ~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 1033 (1288)
.++..+..++++++|++++..|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++.+...
T Consensus 366 ~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--- 442 (686)
T TIGR03797 366 AVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK--- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---
Confidence 88888888899999999999999999999999999999999999999999999999999999999988655432111
Q ss_pred ccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC
Q 000777 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1288)
Q Consensus 1034 ~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~ 1113 (1288)
..+....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus 443 ~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 443 TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1112245689999999999743 457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
.+++|++|+||||||++|+|||||||.++. + ++++++++|++.+++++++.++|+||||++||+|.+|||||||||+|
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGA-P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCC-C-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999984 3 89999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCc
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDG 1273 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g 1273 (1288)
||||+++|+|||||||||+||++||+.|++.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++ +|
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~ 676 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EG 676 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-Cc
Confidence 99999999999999999999999999999999986 6899999999999999999999999999999999999996 89
Q ss_pred HHHHHHHHh
Q 000777 1274 FYASLIALH 1282 (1288)
Q Consensus 1274 ~y~~L~~~~ 1282 (1288)
.|++|++.|
T Consensus 677 ~y~~l~~~q 685 (686)
T TIGR03797 677 LFAQLARRQ 685 (686)
T ss_pred HHHHHHHhc
Confidence 999999876
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-83 Score=824.09 Aligned_cols=564 Identities=25% Similarity=0.376 Sum_probs=499.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 786 (1288)
+++++.+.++.++.+...++.+++..++....++++..+++.+.... .......+.+.++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK--MMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666677777777777888888888765321 1111222333444555667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000777 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1288)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 866 (1288)
+++.++..++|.++|++++++|++||++ +++|++++|++ |.+.+...+...+...+..++.++++++++++++|+++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999994 89999999998 89999999988888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1288)
Q Consensus 867 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1288)
+++++++|+++++.+...+..++..++.....++..+.+.|+++|+++||++|.|+.+.++|.+...+..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888899999999999999999999999999999999999999988888888777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000777 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1288)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1026 (1288)
.....+..++..+..++++++|++++..|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECC
Q 000777 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1288)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1106 (1288)
+..... ...+...+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 459 ~~~~~~-~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 459 INKKKR-TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred cccccc-cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 221110 112234578999999999973 35799999999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChh
Q 000777 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186 (1288)
Q Consensus 1107 ~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1186 (1288)
+|+++++.+++|++|+||||||+||+|||||||.++..++++++++++|++.++++++|.++|+||||.+||+|.+||||
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 99999999999999999999999999999999999843478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhh
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
|||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+|+|
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999985 7899999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHH
Q 000777 1267 LINIPDGFYASLIA 1280 (1288)
Q Consensus 1267 Ll~~~~g~y~~L~~ 1280 (1288)
|+++ +|.|++|++
T Consensus 695 L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 695 LLDR-NGFYASLIH 707 (708)
T ss_pred HHhc-CCcHHHHhh
Confidence 9996 899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-83 Score=855.53 Aligned_cols=570 Identities=29% Similarity=0.466 Sum_probs=489.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1288)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 125 (1288)
+.+++++..++.+ .++++++++++.+++.|+.|++++.+++.+.... ........+.+++++++++.+++.+++.+
T Consensus 813 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 813 LRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA---NLEANSNKYSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544433 3567777888999999999999999999765321 11122344566677788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 126 CWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1288)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1288)
+..+.++++..++|.++|++++++|++|||+ +.++|++++|+++|++.++..+...+..++..++.++++++++++++|
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 237999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Q 000777 205 LLTLVMLSSIPLLAMSGGVMAIMISKMS-SR-----------------GQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266 (1288)
Q Consensus 205 ~l~l~~~~~~p~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 266 (1288)
.+++++++++|++ ...+.++.+... .+ .++..++.+..++|+++|+++||+|+.|+.+.
T Consensus 969 ~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 1045 (1466)
T PTZ00265 969 IVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFC 1045 (1466)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHH
Confidence 9887765444333 333333222211 11 12345677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1288)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (1288)
++|.+..+...+...+.....++..++..++..+..++++|+|++++..|.+++|.+++++.+++....++..+...+..
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~ 1125 (1466)
T PTZ00265 1046 NLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888889999999999999999999998876666555667788888999
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCCCCCcc---cCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCC
Q 000777 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKI---LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1288)
Q Consensus 347 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGs 423 (1288)
+..+.++++|++++++.+++.+..+..+.. ++...+.|+|+||+|+||++++.++|+|+||+|++|+++||||||||
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCC
Confidence 999999999999999877654321111111 12345789999999999866566899999999999999999999999
Q ss_pred cHHHHHHHHHcCCCC------------------------------------------------------CCcEEEECCee
Q 000777 424 GKSTVISLIERFYDP------------------------------------------------------QAGEVLIDGIN 449 (1288)
Q Consensus 424 GKSTl~~~l~g~~~~------------------------------------------------------~~G~i~~~g~~ 449 (1288)
|||||+++|+|+|+| ++|+|++||+|
T Consensus 1206 GKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~d 1285 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285 (1466)
T ss_pred CHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEE
Confidence 999999999999999 69999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000777 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 450 ~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 529 (1288)
+++++.+++|++||||+|+|+||++||||||.+|.|+++++++++|++.+++++||.+||+||||.|||+|.+|||||||
T Consensus 1286 i~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ 1365 (1466)
T PTZ00265 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365 (1466)
T ss_pred HHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeC----CEEe-Eec
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHR----GKIV-EKG 602 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~----G~i~-~~g 602 (1288)
||||||||+++|+|||||||||+||+++|+.|+++|+++. +++|+|+||||+++++.||+|+||++ |+++ |+|
T Consensus 1366 RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999984 68999999999999999999999999 9955 899
Q ss_pred ChhHHhcCCCchHHHHHHHH
Q 000777 603 THSKLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~ 622 (1288)
+|+||++..++.|+++++.+
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhc
Confidence 99999984479999998754
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-83 Score=820.20 Aligned_cols=563 Identities=24% Similarity=0.309 Sum_probs=496.4
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 786 (1288)
+++++.+.++.++.+...++.+++..++....++++..+++....... ......+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666666677777777776553211 111122334445556667888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000777 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1288)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 866 (1288)
.++.++..+++.++|++++++|++||++ +++|++++|++.| +.++.++...+..++.+++.++++++++++++|+++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 296 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT 296 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999984 8999999999988 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1288)
Q Consensus 867 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1288)
+++++++|+.+++.++..+...+..++..+...+..+.+.|.+.|+++||+++.|+.+.++|.+...+..+...+.....
T Consensus 297 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (710)
T TIGR03796 297 LIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLT 376 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888887788888888899999999999999999999999999999999999998888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000777 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1288)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1026 (1288)
.....+..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......+..+..+.+|+.++++.+++.
T Consensus 377 ~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 456 (710)
T TIGR03796 377 QILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 87777888888888888999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCC----CCCccc-cCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCce
Q 000777 1027 DPSD----ESGTIL-EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1288)
Q Consensus 1027 ~~~~----~~~~~~-~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1101 (1288)
+... .....+ +...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 457 LLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred ccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 2211 000111 2345789999999999853 457999999999999999999999999999999999999999999
Q ss_pred EEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCC
Q 000777 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGL 1181 (1288)
Q Consensus 1102 I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~ 1181 (1288)
|++||+|+++++.+++|++|+||||||.+|+|||||||.++. ++++++++++|++.+++++++.++|+||||.+||+|.
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence 999999999999999999999999999999999999999874 4789999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000777 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEK 1261 (1288)
Q Consensus 1182 ~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~ 1261 (1288)
+|||||||||||||||+++|+|||||||||+||++||+.|.+.|++ .++|+|+||||+++++.||||+||++|+|+|.
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999987 58999999999999999999999999999999
Q ss_pred cChhhhhcCCCcHHHHHH
Q 000777 1262 GKHENLINIPDGFYASLI 1279 (1288)
Q Consensus 1262 Gt~~eLl~~~~g~y~~L~ 1279 (1288)
|+|+||+++ +|.|++|+
T Consensus 693 G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 693 GTHEELWAV-GGAYARLI 709 (710)
T ss_pred cCHHHHHHc-CCcHHHHh
Confidence 999999996 89999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-82 Score=791.61 Aligned_cols=564 Identities=23% Similarity=0.287 Sum_probs=484.5
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--chhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE--LKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1288)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 786 (1288)
+++++.+++++.+..+++.+++..+.....+++++.+++........ ......++...+.+++++..++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667676677766666666666667777777654321110 0000111222344455677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000777 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1288)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 866 (1288)
+.+.++..++|.++|++++++|+.||++ +++|++++|+++|++.++.++...++.++..++.+++.++++++++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 867 LIILVMLPLIGV-SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1288)
Q Consensus 867 lv~l~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1288)
+++++++|++++ ..++..+..++..++.++..++..+.+.|.+.|+++||+|+.++++.++|.+..++..+...+....
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887654 4566667777777788888889999999999999999999999999999999999999999988888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000777 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTM-TAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1288)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~ 1024 (1288)
......+..++..+..++++++|.+++ .|.+++|.+++++.+... ...++..+........++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 877777777777777778888898884 789999998887666543 345777778888899999999999999998765
Q ss_pred CCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEE
Q 000777 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1288)
Q Consensus 1025 ~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1104 (1288)
+.+.+... ......+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 323 ~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 323 EVTFPTTS--TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCCCccc--CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 43211111 111234679999999999753 347999999999999999999999999999999999999999999999
Q ss_pred CCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCC
Q 000777 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1105 dG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1184 (1288)
||+|+++++.+++|++|+||||||++|++||+|||.++. ++++|+++++|++.+++++++.+ |+||||.+||+|.+||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS 477 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS 477 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence 999999999999999999999999999999999999984 47899999999999999999999 9999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 000777 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1185 gGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~ 1264 (1288)
||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHH
Q 000777 1265 ENLINIPDGFYASLIAL 1281 (1288)
Q Consensus 1265 ~eLl~~~~g~y~~L~~~ 1281 (1288)
+||+++ +|.|++|++.
T Consensus 558 ~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 558 QELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHhc-CcHHHHHHhh
Confidence 999997 8999999863
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-82 Score=808.66 Aligned_cols=564 Identities=36% Similarity=0.556 Sum_probs=499.1
Q ss_pred ccHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 123 (1288)
..+++++++.++.+. .++.++++.++..++....|++.+.++|......+ .......+++++++.++..++.+++
T Consensus 147 ~~~~~l~~~~~~~~~-~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (711)
T TIGR00958 147 DLLFRLLGLSGRDWP-WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG----PPALASAIFFMCLLSIASSVSAGLR 221 (711)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888775443 45667777788888888899999999998753322 1223333444555666778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000777 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1288)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (1288)
.+++.+.+.++..++|.+++++++++|++||++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++
T Consensus 222 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s 300 (711)
T TIGR00958 222 GGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLS 300 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999975 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 000777 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1288)
Q Consensus 204 ~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1288)
|.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.++|.+..++..+...+.
T Consensus 301 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 380 (711)
T TIGR00958 301 PRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRK 380 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000777 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1288)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 363 (1288)
....+.......++..+..++++++|++++.+|.++.|.+++++.+......|+..+...+..++++..+.+|++++++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 460 (711)
T TIGR00958 381 ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDR 460 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66666555555555666667778899999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 000777 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1288)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 443 (1288)
+++.+... ...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++||||||||||||+++|.|+|+|++|+|
T Consensus 461 ~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 461 KPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 76543221 1122234568999999999986555789999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCC
Q 000777 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1288)
Q Consensus 444 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 523 (1288)
.+||+|+++++.+++|++|+||+|+|++|++||||||.+|.++.++++++++++.++++++++++|+|+||.+||+|.+|
T Consensus 539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 618 (711)
T TIGR00958 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618 (711)
T ss_pred EECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecC
Q 000777 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 603 (1288)
||||||||+||||++++|+|||||||||+||+++++.+++ ....+++|+|+||||++++..||+|++|++|+|+++|+
T Consensus 619 SGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 9999999999999999999999999999999999999998 33346899999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHH
Q 000777 604 HSKLVEDPEGAYSQL 618 (1288)
Q Consensus 604 ~~~l~~~~~~~~~~~ 618 (1288)
|+||+++ ++.|+++
T Consensus 697 ~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 697 HKQLMED-QGCYKHL 710 (711)
T ss_pred HHHHHhC-CCchHhc
Confidence 9999987 6788765
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-86 Score=725.34 Aligned_cols=508 Identities=32% Similarity=0.453 Sum_probs=433.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 773 GSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAA 852 (1288)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~ 852 (1288)
+..+++.++.++...+.+-..+++..++|+|+..+++.|+-. +.+|+++.-+++..+.+. ++.....++...+.-+.
T Consensus 271 gsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~ 347 (790)
T KOG0056|consen 271 GSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLG 347 (790)
T ss_pred cccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhh
Confidence 346777888888889999999999999999999999999874 789999988888777766 66666666666655555
Q ss_pred HHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH
Q 000777 853 AGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931 (1288)
Q Consensus 853 ~~~~~~-~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~ 931 (1288)
++++.. ..++|+.+++++++..+.+.......--..+..+++.....+....-.+++-+.+|+|-|++|++..++|.++
T Consensus 348 va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 348 VAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 555543 3578999999988877776654433333344455566666667777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 932 CEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKS 1011 (1288)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1288)
..++.+...+....-.........+..+..++.-.+..+++..+..++|+++.+..++....+|+...+.+....++...
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfi 507 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFI 507 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhh
Confidence 99988776654333222222222333333333334455667789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHH
Q 000777 1012 AAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091 (1288)
Q Consensus 1012 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL 1091 (1288)
.+++++++++++++..+.+.. ++....+|.|+|+||+|.|+ |++|||+||||+++||+++|+|||||+||||++++|
T Consensus 508 DmEnmfdllkee~eVvd~P~a-~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlL 584 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDLPGA-PPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLL 584 (790)
T ss_pred hHHHHHHHhhcCchhhcCCCC-CCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHH
Confidence 999999999988775432221 22233678999999999996 467899999999999999999999999999999999
Q ss_pred hccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhcc
Q 000777 1092 QRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171 (1288)
Q Consensus 1092 ~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~G 1171 (1288)
+||||.++|+|+|||+||+.+..++||++||+||||.+||++||..||.|++ +.+++||+.+|++.|++||-|..+|+|
T Consensus 585 fRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak-~~AsneevyaAAkAA~IHdrIl~fPeg 663 (790)
T KOG0056|consen 585 FRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK-PSASNEEVYAAAKAAQIHDRILQFPEG 663 (790)
T ss_pred HHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC-CCCChHHHHHHHHHhhHHHHHhcCchh
Confidence 9999999999999999999999999999999999999999999999999995 489999999999999999999999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEE
Q 000777 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIA 1251 (1288)
Q Consensus 1172 ldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~ 1251 (1288)
|+|.|||+|-.||||||||+||||++|++|.|++|||||||||..||+.||.+|.+...+||.|+|||||+||-+||.|+
T Consensus 664 Y~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~IL 743 (790)
T KOG0056|consen 664 YNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLIL 743 (790)
T ss_pred hhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhhhhcCCCcHHHHHHH-HhhcccC
Q 000777 1252 VVKNGVIVEKGKHENLINIPDGFYASLIA-LHSSAST 1287 (1288)
Q Consensus 1252 vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~-~~~~~~~ 1287 (1288)
|+++|+|+|.|+|+||+++.+|.|++||+ +|...++
T Consensus 744 vi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g~t 780 (790)
T KOG0056|consen 744 VISNGRIVERGRHEELLKRDGGAYADMWQAQQAMGKT 780 (790)
T ss_pred EEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcCcc
Confidence 99999999999999999988999999995 5555444
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-82 Score=790.68 Aligned_cols=561 Identities=34% Similarity=0.588 Sum_probs=501.4
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTC 126 (1288)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 126 (1288)
++++++.+ .+ .+..+.++.++........|++++.++|.+.. .......+...++++.++..++.++..++
T Consensus 5 ~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 75 (567)
T COG1132 5 RRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA------DLGELLELLLLLLLLALLGGVLRALQSYL 75 (567)
T ss_pred HHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 33 45566666667777777888888888887651 11223344445556666778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000777 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206 (1288)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 206 (1288)
..+.+.++..++|..++++++++|+++|++. ++|++++|+++|++.++..+......+...+..+++.+++++..+|.+
T Consensus 76 ~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (567)
T COG1132 76 GSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL 154 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888899999999999999999999999975 899999999999999999998886666657888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA 286 (1288)
Q Consensus 207 ~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1288)
++++++.+|++.+...++.++.++..++.++..++.++.+.|.++|++++|+|+.++.+.+++.+..+...+...+....
T Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (567)
T COG1132 155 ALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRL 234 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888778888889999999999999999999999999999999999999888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 000777 287 AGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPE 366 (1288)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 366 (1288)
.+...++...+..+...+++++|..++..+.++.|.+++++.+......|+..+...+..+..+..+++|++++++.+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 314 (567)
T COG1132 235 EALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPE 314 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777888888888888999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Q 000777 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1288)
Q Consensus 367 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 446 (1288)
..+.... .....+.|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|.|+|+|++|+|++|
T Consensus 315 ~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~id 389 (567)
T COG1132 315 VEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILID 389 (567)
T ss_pred ccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEEC
Confidence 4332211 2334577999999999973 4679999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
|+|+++++.+++|++|+||||+|+||++||+|||.+|.|++++++++++++.++++++++++|+||||.+||+|.+||||
T Consensus 390 g~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgG 469 (567)
T COG1132 390 GIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469 (567)
T ss_pred CEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhH
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1288)
||||+|||||++++|+|||||||||+||+++|+.+++.+.++.++||+|+||||++++++||+|+||++|+|+|.|+|+|
T Consensus 470 QrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 470 QRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHh
Q 000777 607 LVEDPEGAYSQLIRLQE 623 (1288)
Q Consensus 607 l~~~~~~~~~~~~~~~~ 623 (1288)
|+++ ++.|+++++.+.
T Consensus 550 Ll~~-~g~y~~l~~~~~ 565 (567)
T COG1132 550 LLAK-GGLYARLYQAQG 565 (567)
T ss_pred HHHc-CCHHHHHHHHhh
Confidence 9998 899999997764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-82 Score=792.67 Aligned_cols=565 Identities=34% Similarity=0.503 Sum_probs=491.6
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789 (1288)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 789 (1288)
++.+.++.++.+...++..++..+.....++++..+++..+.... .....+....++++.++..++.+++.++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555544455455554545555666666665442110 111111222334456667788888889999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000777 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALII 869 (1288)
Q Consensus 790 ~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~ 869 (1288)
.++..++|..+|+++++.|.++|++ ..+|++++|+++|++.+...+...+..++..++.+++.++++++++|++++++
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 171 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLIL 171 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999984 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 870 LVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1288)
Q Consensus 870 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1288)
++++|+.+++.+...+..++..++.++...+..+.+.|.++|+++||+++.++.+.++|.+..++..+...+........
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T PRK11176 172 IVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSIS 251 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99889888888888888888788888888899999999999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000777 950 FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS 1029 (1288)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 1029 (1288)
..+..++..+...+++++|++++..|.+++|.+++++.+...+..|+..+......++.+..+.+|+.++++.+++.+..
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 331 (582)
T PRK11176 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 77777777777888889999999999999999999998888899999999999999999999999999998765432211
Q ss_pred CCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeec
Q 000777 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1288)
Q Consensus 1030 ~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1109 (1288)
. ...++..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 332 ~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 407 (582)
T PRK11176 332 K---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407 (582)
T ss_pred C---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence 1 1112234579999999999754 45799999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1110 ~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
++++.+++|++|+||||||++|+|||||||.++.+++++|++++++++.+++++++.++|+||||.+||+|.+|||||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred hhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999854458999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhc
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
||+|||||+++|+|||||||||+||++||+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|++|++
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhh
Q 000777 1270 IPDGFYASLIALHS 1283 (1288)
Q Consensus 1270 ~~~g~y~~L~~~~~ 1283 (1288)
+ ++.|++|++.|.
T Consensus 568 ~-~~~y~~l~~~~~ 580 (582)
T PRK11176 568 Q-NGVYAQLHKMQF 580 (582)
T ss_pred C-CChHHHHHHHHh
Confidence 7 799999998764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-82 Score=804.59 Aligned_cols=554 Identities=28% Similarity=0.410 Sum_probs=489.3
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1288)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 787 (1288)
++++.+.++.++.+...++.+++..++....++++..+++......+ ......+...++++.++..++.+++.++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666666666666667777777888876553211 1111223334444556678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000777 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1288)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 867 (1288)
.+.++..++|..+|+|++++|++| + ++++|++++|+ +|++.++.++...+...+..++.+++.++++++++|++++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999998 4 47899999999 7999999999998888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1288)
Q Consensus 868 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1288)
++++++|+++++.+...+..++..++..+...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+......
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888999999999999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000777 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1288)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 1027 (1288)
....+...+..+..++++++|++++..|.+|+|.++++..+...+..|+..+......+.....+.+|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88778888888888888999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCe
Q 000777 1028 PSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1288)
Q Consensus 1028 ~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~ 1107 (1288)
... .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 450 ~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 450 EGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred CCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 211 111112345689999999999753 457999999999999999999999999999999999999999999999999
Q ss_pred eccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhH
Q 000777 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1108 di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1187 (1288)
|+++++++++|++|+||||||++|+|||+|||.++. ++++++++++|++.+++++++.++|+||||.+||+|.+|||||
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 999999999999999999999999999999999984 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhh
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||||+|||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+||
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hcC
Q 000777 1268 INI 1270 (1288)
Q Consensus 1268 l~~ 1270 (1288)
+++
T Consensus 687 l~~ 689 (694)
T TIGR03375 687 LEA 689 (694)
T ss_pred HHH
Confidence 875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-81 Score=796.43 Aligned_cols=563 Identities=27% Similarity=0.358 Sum_probs=497.9
Q ss_pred ccHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000777 44 VPFYKLFTF-ADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1288)
Q Consensus 44 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 122 (1288)
..+++++++ .++.+ ..+...+++.++..++....|++++.++|.+..... .+.+...++.++++.++.+++.++
T Consensus 121 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~ 195 (686)
T TIGR03797 121 LGLRDLLRFALRGAR-RDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD----RSLLVQIALALLAAAVGAAAFQLA 195 (686)
T ss_pred ccHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666 33333 334555566667777777888899999998753221 233444555566667778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1288)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (1288)
+.++....+.++..++|..+++|++++|++||+++ ++|++++|++ |++.+++.+...+...+..+..+++.+++++++
T Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (686)
T TIGR03797 196 QSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYY 273 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999975 9999999997 899999999888777777777778888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 000777 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1288)
Q Consensus 203 ~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1288)
+|++++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+
T Consensus 274 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 353 (686)
T TIGR03797 274 SWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS 353 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888898888899999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000777 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1288)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 362 (1288)
......+...+..++..+..++++++|++++.+|.++.|.++++..++.....|+..+...+..++.+..+.+|+.++++
T Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 433 (686)
T TIGR03797 354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILE 433 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88887777777777777778888999999999999999999999998888899999999999999999999999999998
Q ss_pred cCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 000777 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1288)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 442 (1288)
.+++.+... ..+....+.|+++||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+
T Consensus 434 ~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 434 ALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred CCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 765532211 1122234689999999999643 467999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCC
Q 000777 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1288)
Q Consensus 443 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 522 (1288)
|++||+|+++++.+++|++||||||+|++|++||+|||.++.| .++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred EEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 9999999999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEec
Q 000777 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 523 LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 602 (1288)
|||||||||+||||++++|+|||||||||+||+++++.+.+.|+++ ++|+|+||||+++++.||+|++|++|+|+++|
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999887 58999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHH
Q 000777 603 THSKLVEDPEGAYSQLIRL 621 (1288)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~ 621 (1288)
+|+|++++ ++.|++++..
T Consensus 667 ~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 667 TYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CHHHHHhC-CcHHHHHHHh
Confidence 99999986 7899988764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-81 Score=786.35 Aligned_cols=562 Identities=26% Similarity=0.347 Sum_probs=476.7
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789 (1288)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 789 (1288)
+..+.+++++.+...++.+++..++....++++..+++..+............+.++++++.++..++.+++.++...++
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666667777777777888888888665321110000111223344455567778888999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000777 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALII 869 (1288)
Q Consensus 790 ~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~ 869 (1288)
.++..++|.++|+++++.|++||+. ++.|++++|+++|++.++..+...+..++..+..+++.++++++++|++++++
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~ 171 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVA 171 (592)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999984 88999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 870 LVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1288)
Q Consensus 870 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1288)
++++|+.++...+..+..+...++..+...+..+.+.|.+.|+++||+|+.++++.++|.+..++..+...+........
T Consensus 172 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (592)
T PRK10790 172 IMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFL 251 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777777777777777778888999999999999999999999999999998888777766655544332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000777 950 -FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1288)
Q Consensus 950 -~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 1028 (1288)
..+..++..+...+++++++. +..|.+++|.++++..+...+..|+..+......+++...+.+|+.++++.+++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 252 LRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 222222222222222222333 578999999999999999999999999999999999999999999999876543211
Q ss_pred CCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCee
Q 000777 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1288)
Q Consensus 1029 ~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1108 (1288)
. ...+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||.|
T Consensus 331 ~----~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 404 (592)
T PRK10790 331 N----DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRP 404 (592)
T ss_pred C----CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence 1 111223467999999999974 3479999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1109 i~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
+++++++.+|++|+||||||.+|+|||||||+++. +++|+++++|++.+|+++++.++|+||||.+||+|.+||||||
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 99999999999999999999999999999999984 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|||||||||+++|+|||||||||+||++||+.|.+.|++..++||+|+||||+++++.||+|++|++|+++|.|+|+||+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHhh
Q 000777 1269 NIPDGFYASLIALHS 1283 (1288)
Q Consensus 1269 ~~~~g~y~~L~~~~~ 1283 (1288)
++ ++.|+++++.|.
T Consensus 563 ~~-~~~y~~l~~~~~ 576 (592)
T PRK10790 563 AA-QGRYWQMYQLQL 576 (592)
T ss_pred hC-CCHHHHHHHHHh
Confidence 97 899999998774
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-81 Score=711.91 Aligned_cols=505 Identities=27% Similarity=0.342 Sum_probs=448.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000777 769 ALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNI 848 (1288)
Q Consensus 769 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~ 848 (1288)
++++++.+..+......+.+..++..++|.++|+++...+..-..+ ..+|+++||+..|++.+|+.+-..+.+.+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r--~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR--YRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh--cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 4677888899999999999999999999999999999999887774 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHH
Q 000777 849 STAAAGLIIAFTASWQLALIILVML-PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQL 927 (1288)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~lv~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~ 927 (1288)
+..++..+.+.+++|++++.+..++ .+++++++...++.++..+......+...+++.+.+.|....+.||+++.+.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 9999888888899999988776554 455677888888989889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000777 928 YKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS-SFSSDS 1006 (1288)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1006 (1288)
+.+..+.+.+...+...+..+...+..++..+..+..+.+.+..+..|..+......+++.......++.-+. ....+.
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence 9999999999999998888887777777777666645555555566777775444444444444444444444 666788
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHH
Q 000777 1007 NKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086 (1288)
Q Consensus 1007 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKST 1086 (1288)
.+...++.|+.++.+++++...+.++. +.....++++||||+||++ .+++|+|+||++++||||||+|||||||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~~~~~---~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFPDEQT---ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCCcccc---CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 889999999999999887765441111 1111279999999999965 568999999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHH
Q 000777 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166 (1288)
Q Consensus 1087 L~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~ 1166 (1288)
|+++|.|.|+|++|+|.++|.+++.++.+.+|+.|++++|.+++|++|+|+||.+++ +++||||+|+|++++|++++++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~-~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN-PDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985 5799999999999999999999
Q ss_pred hhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh
Q 000777 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN 1246 (1288)
Q Consensus 1167 ~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~ 1246 (1288)
+.|+||+|++||+|.+||||||||+||||+||+|.|++||||||.+||++||++|.+.|.+..+++|+|+||||+..++.
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHH
Q 000777 1247 ADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281 (1288)
Q Consensus 1247 ~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1281 (1288)
||||+|||+|+++|+|+|.+|+++ +|.|++|++.
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q~ 572 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhcc
Confidence 999999999999999999999996 9999999763
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-81 Score=796.20 Aligned_cols=567 Identities=27% Similarity=0.405 Sum_probs=499.5
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 786 (1288)
+++++.+.++.++.+...++.+++..++....++++..+++......+ ......+.+.++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555556666666666666677777888877653211 112223344455566667888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000777 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1288)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 866 (1288)
.++.++..++|.++|++++++|++||+. +++|++++|+ +|++.++.++...+..++..++.+++.++++++++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 8999999999 699999999998888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1288)
Q Consensus 867 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1288)
+++++++|+++++.++..+..++..++..+...+..+.+.|+++|+++||++|.|+.+.++|.+..++..+...+.....
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888877777777777888889999999999999999999999999999999999999999888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000777 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1288)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1026 (1288)
.....+..++..+..++++++|++++..|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 87777788888888888999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECC
Q 000777 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1288)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1106 (1288)
... .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 442 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 442 RSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred cCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 221 111122345789999999999743 35799999999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChh
Q 000777 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186 (1288)
Q Consensus 1107 ~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1186 (1288)
+|+++++.+++|++|+||||||.+|+|||+|||.++. ++++++++++|++.+++++++.++|+||||.+|++|.+||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 9999999999999999999999999999999999974 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhh
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
|||||+|||||+++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+|
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHhh
Q 000777 1267 LINIPDGFYASLIALHS 1283 (1288)
Q Consensus 1267 Ll~~~~g~y~~L~~~~~ 1283 (1288)
|+++ +|.|++|++.|.
T Consensus 678 l~~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 678 LLAL-QGLYARLWQQQS 693 (694)
T ss_pred HHHc-CChHHHHHHhhc
Confidence 9997 899999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-81 Score=796.93 Aligned_cols=565 Identities=28% Similarity=0.413 Sum_probs=496.9
Q ss_pred ccHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 123 (1288)
..+++++++.++.++ .+...++++++..++....|++++.++|.+..... ...+..+.+.++++.++.+++.+++
T Consensus 142 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~ 216 (708)
T TIGR01193 142 NSLLKFIPLITRQKK-LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM----MGTLGIISIGLIIAYIIQQILSYIQ 216 (708)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777765444 34455556666677777888899999998654321 1223334444555667778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000777 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1288)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (1288)
.++..+.+.++..++|.+++++++++|+.||+++ ++|++++|++ |++.+++.+...+...+..+..+++.++++++++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (708)
T TIGR01193 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQN 294 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999975 9999999998 9999999988888777878778888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 000777 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1288)
Q Consensus 204 ~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1288)
|++++++++.+|+++++..++.+..++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+...+..+...+.
T Consensus 295 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 374 (708)
T TIGR01193 295 MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKY 374 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000777 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1288)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 363 (1288)
....+....+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 375 QKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77776666666666667777888999999999999999999999988888999999999999999999999999999987
Q ss_pred CCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 000777 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1288)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 443 (1288)
+++.+.... ....++..+.|+++||+|+|+. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 455 ~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 455 DSEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred CCccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 655332211 0112334578999999999963 4579999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcC-CCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCC
Q 000777 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1288)
Q Consensus 444 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 522 (1288)
++||+|+++++.+++|++|+||||+|+||++||+|||.++ .++.++++++++++.++++++++++|+||||.+||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9999999999999999999999999999999999999998 578899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEec
Q 000777 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 523 LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 602 (1288)
|||||||||+||||++++|+|||||||||+||+++++.+++.|+++ +++|+|+||||+++++.||+|++|++|++++.|
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999885 689999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 000777 603 THSKLVEDPEGAYSQLIR 620 (1288)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1288)
+|+|++++ ++.|+++++
T Consensus 691 ~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 691 SHDELLDR-NGFYASLIH 707 (708)
T ss_pred CHHHHHhc-CCcHHHHhh
Confidence 99999987 788988763
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-81 Score=710.84 Aligned_cols=543 Identities=29% Similarity=0.431 Sum_probs=457.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-C-ccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 000777 732 GVILPIYGLLISSVIETFFKP-P-HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEV 809 (1288)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 809 (1288)
-++....+.++...++..-.. . ........-.+..|++..++..+++.++.+.+.++.+++.++.-.++|.+++++++
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344444555555555544211 1 11111122345667888888999999999999999999999999999999999999
Q ss_pred cccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 810 SWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMK 888 (1288)
Q Consensus 810 ~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~ 888 (1288)
+||.+ ..+|.+.+.+.+....+...+...+..++..++.+......+ .-+.+..+++.+..+..++.+.+.......
T Consensus 123 ~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn 200 (591)
T KOG0057|consen 123 SFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN 200 (591)
T ss_pred HhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence 99985 678999999999999999888888887777776665555433 335566666666666666666555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000777 889 GFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAG 968 (1288)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 968 (1288)
+..++..++...+.+.+.+++.+.++||.||.|++..++|...+.++.+...+.....+........+.....+.+.+.+
T Consensus 201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~ 280 (591)
T KOG0057|consen 201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLG 280 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999999999999999999999999999999999888877766655544444455545556666777
Q ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEE
Q 000777 969 ARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHV 1048 (1288)
Q Consensus 969 ~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nV 1048 (1288)
..-+.+|.+|+++++.+...+.....++..+.....+..++......++.+.+........ ..+....++.|+|+||
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDDV 357 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEee
Confidence 7778899999999999999999999999999998888888888877777654433222111 1122234577999999
Q ss_pred EEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCC
Q 000777 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1288)
Q Consensus 1049 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~ 1128 (1288)
+|.|+ |++++|+++||+|++||||||||+|||||||++++|+||++ ++|+|+|||+||++++++.+|+.|||||||.
T Consensus 358 ~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 99997 35579999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEec
Q 000777 1129 VLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDE 1208 (1288)
Q Consensus 1129 ~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDE 1208 (1288)
.||++||.+||.||. +.+++||+.++||++++||.+.++|+||+|.|||+|..||||||||++||||++++|||++|||
T Consensus 435 ~LFndTIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred cccchhHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 999999999999995 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHhhc
Q 000777 1209 ATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSS 1284 (1288)
Q Consensus 1209 aTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1284 (1288)
|||+||.+||+.|.+.+.....++|+|+|+||++++++||+|+++|+|+|+|.|+|+||++ +.+.|+++|..|..
T Consensus 514 aTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 514 ATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS 588 (591)
T ss_pred cccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence 9999999999999999999889999999999999999999999999999999999999999 59999999988753
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-80 Score=795.37 Aligned_cols=564 Identities=25% Similarity=0.340 Sum_probs=495.4
Q ss_pred cHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1288)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 124 (1288)
.++.++++.++.+. .+...++++++..++..+.|++.+.++|....... ...+..+++.++++.++.+++.+++.
T Consensus 141 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (710)
T TIGR03796 141 LLRALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR----QDWLRPLLLGMGLTALLQGVLTWLQL 215 (710)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666654433 23445555566666666778889999987653321 12233344445556677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1288)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1288)
++....+.++..++|..++++++++|+++|+++ ++|++++|+++| +.+++++...+...+..+..+++.++++++++|
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 293 (710)
T TIGR03796 216 YYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP 293 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975 999999999988 689999988888888899899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1288)
Q Consensus 205 ~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1288)
.+++++++.+|+.+++..++.+..++..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+..
T Consensus 294 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 373 (710)
T TIGR03796 294 VLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELG 373 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888999999888888888999999999999999999999999999999999999988888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000777 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1288)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 364 (1288)
...++...+..++..+..++++++|++++.+|.+++|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+
T Consensus 374 ~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~ 453 (710)
T TIGR03796 374 VLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNP 453 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777777777777777888899999999999999999999999888889999999999999999999999999999876
Q ss_pred CCCccCCC---C-Cccc-CCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 000777 365 PEIDAYDT---K-GKIL-DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1288)
Q Consensus 365 ~~~~~~~~---~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~ 439 (1288)
++.+.... . .... +...+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 454 ~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 454 VDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred CccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 55322110 0 0111 2335689999999999743 467999999999999999999999999999999999999999
Q ss_pred CcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCC
Q 000777 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1288)
Q Consensus 440 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 519 (1288)
+|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.++++++++++|+|+||.+||+
T Consensus 533 ~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 533 SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEe
Q 000777 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1288)
Q Consensus 520 g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 599 (1288)
|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++ .++|+|+||||+++++.||+|++|++|+|+
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999987 489999999999999999999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 000777 600 EKGTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1288)
+.|+|+||+++ ++.|++++
T Consensus 691 ~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 691 QRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EecCHHHHHHc-CCcHHHHh
Confidence 99999999986 78888775
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-80 Score=770.38 Aligned_cols=566 Identities=22% Similarity=0.320 Sum_probs=487.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNN-SETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1288)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 124 (1288)
++++++|.+++++ .+++++++.++..++....|+++++++|........ ..... ....+..+++++++..++.+++.
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN-YMLPAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456677766544 345666677777777778888999999864311110 00011 11122234456677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1288)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1288)
++....+.++..++|.++++|++++|+.+|++. ++|++++|+++|++.++.++...+..++..++.++++++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 000777 205 LLTLVMLSSIPLLAMS-GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1288)
Q Consensus 205 ~l~l~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1288)
.+++++++++|+++++ ..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888876554 466677778888888889999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000777 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT-GSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1288)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 362 (1288)
....+...++..++..+..++++++|+++ .+|.++.|.+++++.+... ...++..+...+..++++.++++|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888777777777777777788899888 4889999998887655433 345677777788889999999999999998
Q ss_pred cCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 000777 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1288)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 442 (1288)
.+++.+.... .......+.|+++||+|+|++. ++++|+|+||++++||+++||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 7665332111 1112234679999999999742 357999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCC
Q 000777 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1288)
Q Consensus 443 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 522 (1288)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.+++++++++ |+||||.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEec
Q 000777 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 523 LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 602 (1288)
||||||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|++++.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 000777 603 THSKLVEDPEGAYSQLIR 620 (1288)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1288)
+|+|++++ ++.|+++++
T Consensus 556 ~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CHHHHHhc-CcHHHHHHh
Confidence 99999987 789998875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-80 Score=712.79 Aligned_cols=552 Identities=26% Similarity=0.408 Sum_probs=488.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143 (1288)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 143 (1288)
..++.++.++......+++...++.+..... ...+..++..++++.++++++.+.+.......+.++...+|..++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~----~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL----FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666777777776654321 233455666677778889999999999999999999999999999
Q ss_pred HHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000777 144 KTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223 (1288)
Q Consensus 144 ~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~~~~ 223 (1288)
+++.++++.+-... ++|+..+.+...++.++.++...++.+....+..+..++.+|+++|..++++++++|++.+++..
T Consensus 81 ~~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 81 DKLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998864 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA 303 (1288)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1288)
+++..++..++....+...++++-+.++|+.|+|.|+..+...+++.+..++..+..++.-+..-+...+..++.+++.+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888777766667777777777777
Q ss_pred HHHHHHHHHHhh-cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCCcc
Q 000777 304 LSVWYGGKLILE-EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382 (1288)
Q Consensus 304 ~~~~~g~~~v~~-~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 382 (1288)
++..+.+..... |.++....+.++...--++.|+..+...++.-+.+.++++.++.+++.+++..+.............
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 665555555555 7888877777777777778999999999999999999999999999876653332211111122223
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++|++|.||. ++++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||+++
T Consensus 320 ei~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 4556699999974 34899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000777 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1288)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~ 542 (1288)
+||+|+|++|++||||||.+++++.++++++++++.+++.+++.. |+|+||.+||+|.+|||||+||++||||++++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHHHHH
Q 000777 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 543 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1288)
++|||||||+||.+||+.|.+.|.++.+++|+|+||||+..+.+||+|+|||+|+++++|+|++|.++ ++.|++++..|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999776
Q ss_pred hh
Q 000777 623 EA 624 (1288)
Q Consensus 623 ~~ 624 (1288)
+.
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 43
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-79 Score=771.76 Aligned_cols=564 Identities=34% Similarity=0.516 Sum_probs=504.8
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789 (1288)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 789 (1288)
++.+.++.++.++.+++.+++.+++.+..++++..+++..+... ......++...++++.++..++.+++.++..+.+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555667777777777777777777777777776554321 1111222334566667778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000777 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALII 869 (1288)
Q Consensus 790 ~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~ 869 (1288)
.++...+|..+|+++++.|.++|++ .++|++.+|+++|++.++..+...+..++.+++.++++++++++++|++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999984 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 870 LVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1288)
Q Consensus 870 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1288)
++++|+.+++.++..+..++..++..+...+..+.+.|.++|+++||.++.++++.++|.+..++..+...+........
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888889999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000777 950 FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS 1029 (1288)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 1029 (1288)
..+...+..+...+.+++|+.++..|.+++|.++++..+...+..|+..+......+..+..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999998765443211
Q ss_pred CCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeec
Q 000777 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1288)
Q Consensus 1030 ~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1109 (1288)
. ...++..+.|+++||+|+|++. ++++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 321 ~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 321 T---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 1 1111234679999999999754 45799999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1110 ~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
++++.+++|++|+||||||++|+|||||||.++.+++.++++++++++.+++++++.++|+||||.+||+|.+|||||||
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 99999999999999999999999999999999853378999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhc
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||||++++|+|||||||||+||+++|+.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHh
Q 000777 1270 IPDGFYASLIALH 1282 (1288)
Q Consensus 1270 ~~~g~y~~L~~~~ 1282 (1288)
+ ++.|++++..+
T Consensus 557 ~-~~~~~~~~~~~ 568 (571)
T TIGR02203 557 R-NGLYAQLHNMQ 568 (571)
T ss_pred c-CCHHHHHHHHh
Confidence 6 78999998765
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=784.32 Aligned_cols=556 Identities=25% Similarity=0.383 Sum_probs=490.9
Q ss_pred cHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1288)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 124 (1288)
.++.++++.++.+. .+...++++++..++....|++++.++|....... ...+..+++.++++.++..++.+++.
T Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~ 208 (694)
T TIGR03375 134 PKHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA----FETLWVLAIGVALAIVFDFVLKTLRS 208 (694)
T ss_pred cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666654433 33455556666667777888899999997653321 12233344445555667788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1288)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1288)
++..+.+.++..++|..+++|++++|+.| +++ ++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|
T Consensus 209 ~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (694)
T TIGR03375 209 YFLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGG 285 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998 554 899999999 799999999988877778788788888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1288)
Q Consensus 205 ~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1288)
.+++++++.+|+++++..++.++.++..++.++..++..+.+.|+++|+++||.|+.|+.+.++|.+...+..+...+..
T Consensus 286 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR03375 286 PLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSR 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000777 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1288)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 364 (1288)
...+....+..++..+..++++++|++++.+|.+++|.+++++.++..+..|+..+...+..+..+..+.+|+.++++.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~ 445 (694)
T TIGR03375 366 FLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLP 445 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88887777777777777788889999999999999999999999998889999999999999999999999999999876
Q ss_pred CCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 000777 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1288)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~ 444 (1288)
++.+... .....+...+.|+++||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 446 ~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 446 VERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred CCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 6532211 111122335689999999999742 45799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCC
Q 000777 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1288)
Q Consensus 445 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 524 (1288)
+||+|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.++++++++++|+|+||.+||+|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecCh
Q 000777 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 525 gGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 604 (1288)
||||||++||||++++|+|||||||||+||+++++.+++.|.++.+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hHHhcC
Q 000777 605 SKLVED 610 (1288)
Q Consensus 605 ~~l~~~ 610 (1288)
+||++.
T Consensus 684 ~eLl~~ 689 (694)
T TIGR03375 684 DQVLEA 689 (694)
T ss_pred HHHHHH
Confidence 999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=761.87 Aligned_cols=565 Identities=31% Similarity=0.521 Sum_probs=493.4
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTC 126 (1288)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 126 (1288)
+.++++.++.++. ++..+++.++..++....+++++.++|...... . ...+....+.+++++++.+++.+++.++
T Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (582)
T PRK11176 14 RRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKA-D---RSVLKWMPLVVIGLMILRGITSFISSYC 88 (582)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554443 344445566666666777788888887654221 1 1122223333445667778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000777 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206 (1288)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 206 (1288)
..+.+.++..++|..++++++++|.++|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 89 ~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 89 ISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999875 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA 286 (1288)
Q Consensus 207 ~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1288)
++++++++|+.+++..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888999999999999999999999999999999999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 000777 287 AGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPE 366 (1288)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 366 (1288)
..+...+..++..+..++++++|++.+.+|.+++|.+++++.++.....|+..+...+..+..+..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 77777767777667777788899999999999999999888888888899999999999999999999999999986544
Q ss_pred CccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Q 000777 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1288)
Q Consensus 367 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 446 (1288)
.+... ...++..+.|+++||+|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++|
T Consensus 328 ~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 328 KDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 22111 1112234579999999999743 4679999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCC-CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCCh
Q 000777 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1288)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 525 (1288)
|+|+++++.+++|++|+||||+|++|++||+|||.+|.++ .++++++++++.++++++++++|+|+||.+|++|.+|||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 9999999999999999999999999999999999998764 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChh
Q 000777 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 526 Gqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1288)
||||||+||||++++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 000777 606 KLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1288)
++++. ++.|++++..+
T Consensus 564 ~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 564 ELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred HHHhC-CChHHHHHHHH
Confidence 99987 68899988654
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=761.55 Aligned_cols=562 Identities=30% Similarity=0.409 Sum_probs=482.5
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVA 788 (1288)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 788 (1288)
++..+.++.+..+...++.+++..++....++++..+++..... .....+.++++++.++..+..++..++..+.
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (588)
T PRK13657 9 RVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK-----GDIFPLLAAWAGFGLFNIIAGVLVARHADRL 83 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666677777778888765432 1111222333333344444444455555556
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000777 789 GNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALI 868 (1288)
Q Consensus 789 ~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv 868 (1288)
..++..+++.++|+++++.|+.+|++ .+.|++++|+++|++.+...+...+..++..++.+++.++++++++|+++++
T Consensus 84 ~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 161 (588)
T PRK13657 84 AHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLV 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677779999999999999984 8899999999999999999888888888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000777 869 ILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1288)
Q Consensus 869 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1288)
+++++|+.+++.++..+..++..++..+...+..+.+.|.++|+++||.|+.++.+.++|.+..++..+...+.......
T Consensus 162 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK13657 162 LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWAL 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777777777777888889999999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000777 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1288)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 1028 (1288)
...+..++..+...+++++|++++..|.+++|.+++++.+...+..++..+.........+..+.+|+.++++.+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 321 (588)
T PRK13657 242 ASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 77777777778888889999999999999999999999999999999999999999999999999999999876543221
Q ss_pred CCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCee
Q 000777 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1288)
Q Consensus 1029 ~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1108 (1288)
.. .....+...+.|+|+||+|+||++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||.|
T Consensus 322 ~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~ 398 (588)
T PRK13657 322 PP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398 (588)
T ss_pred CC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 11 111112234579999999999742 469999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1109 i~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
+++++.+++|++|+||||||.+|+|||||||.++. ++.+|++++++++.+++++++.++|+|+||.+|++|.+||||||
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred hhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999984 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|||||||||+++|+|||||||||+||+++|+.|.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++|+
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHh
Q 000777 1269 NIPDGFYASLIALH 1282 (1288)
Q Consensus 1269 ~~~~g~y~~L~~~~ 1282 (1288)
++ ++.|++|++.+
T Consensus 558 ~~-~~~y~~l~~~~ 570 (588)
T PRK13657 558 AR-GGRFAALLRAQ 570 (588)
T ss_pred HC-CChHHHHHHHh
Confidence 86 89999999865
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-79 Score=756.58 Aligned_cols=521 Identities=24% Similarity=0.314 Sum_probs=448.2
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 000777 711 AYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWAL--IYLALGAGSFLLSPAQSYFFAVA 788 (1288)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 788 (1288)
..+.+++++.++..++.+++..+.....+++++.+++....... ...++.. .++++.++..++.++..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666777777777776542111 1111111 12234456677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000777 789 GNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALI 868 (1288)
Q Consensus 789 ~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv 868 (1288)
+.++..++|.++|++++++|.+||++ +++|++++|+++|++.++..+...+..++..++.++++++++++++|.++++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 158 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALV 158 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999984 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 869 ILVMLPLIGVSG-YTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1288)
Q Consensus 869 ~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1288)
+++.+|++.++. ++..+..+...++.++..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 159 LAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877766554 4444444555566677778889999999999999999999999999999999999998888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000777 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1288)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 1027 (1288)
....+..++..+...+++++|++++..|.+++|.+.+++.+...+..++..+......+.++..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 77777888888888888899999999999999999999999899999999999999999999999999999997665432
Q ss_pred CCCCC-CccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECC
Q 000777 1028 PSDES-GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1288)
Q Consensus 1028 ~~~~~-~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1106 (1288)
..+.+ ....++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 319 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 319 EGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred CCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 11111 11111234679999999999753 3699999999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChh
Q 000777 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186 (1288)
Q Consensus 1107 ~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1186 (1288)
+|++++ .+++|++|+||||||+||+|||||||++|. ++++||++++|++.++++|||.++|+||||++||+|.+||||
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 999999 999999999999999999999999999984 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCc
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRL 1241 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl 1241 (1288)
||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-78 Score=769.92 Aligned_cols=568 Identities=28% Similarity=0.410 Sum_probs=499.3
Q ss_pred ccHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 123 (1288)
..+..++++.++.+. .+...+++.++..++....|++++.++|....... ...+..+++.++++.++.+++.+++
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~----~~~l~~l~~~~~~~~~~~~~~~~l~ 199 (694)
T TIGR01846 125 FGFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG----LSTLSVLALAMLAVAIFEPALGGLR 199 (694)
T ss_pred CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666554433 33445555566666667778899999997653221 2233344455566667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000777 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1288)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (1288)
.++....+.++..++|.+++++++++|+.||+++ ++|++++|+ +|++.+++++...+...+..+..+++.++++++++
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 277 (694)
T TIGR01846 200 TYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYS 277 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999975 999999999 69999999998877777777776777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 000777 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1288)
Q Consensus 204 ~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1288)
|.+++++++++|+++++..++.+..++..++.++..++..+.+.|+++|+++||+++.|+.+.++|.+...+..+...+.
T Consensus 278 ~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 357 (694)
T TIGR01846 278 PTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRV 357 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000777 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1288)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 363 (1288)
....+....+..++..+..++++++|++++.+|.+|.|.++++..+......|+..+...+..++.+..+.+|+.++++.
T Consensus 358 ~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 437 (694)
T TIGR01846 358 TNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88887777777777777788889999999999999999999999888888999999999999999999999999999987
Q ss_pred CCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 000777 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1288)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 443 (1288)
+++.+.. .....+...+.|+++||+|+|+.. ++++|+|+||+|++||+++|||+||||||||+++|+|+|+|++|+|
T Consensus 438 ~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 438 PTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred CCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 6553221 111122335689999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCC
Q 000777 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1288)
Q Consensus 444 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 523 (1288)
++||+|+++++.+++|++|+||+|+|++|++||+|||.++.|+.++++++++++.++++++++++|+|+||.+|++|.+|
T Consensus 515 ~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred EECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecC
Q 000777 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 603 (1288)
|||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHH
Q 000777 604 HSKLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~ 622 (1288)
|++++++ ++.|+++++.+
T Consensus 675 ~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 675 HEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHHc-CChHHHHHHhh
Confidence 9999987 68999988643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=760.55 Aligned_cols=567 Identities=36% Similarity=0.547 Sum_probs=493.0
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789 (1288)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 789 (1288)
++.+.++.++.+...++.+++.+++....++++..+++..+...+ ......+..+++++.++..++.+++.++..+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTWLG 86 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666677777777777888888876442211 111222334445555566777888889999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000777 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALII 869 (1288)
Q Consensus 790 ~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~ 869 (1288)
.++..++|..+++++++.|.++|+. .++|++++|+++|++.++.++...+..++..++.+++.++++++++|++++++
T Consensus 87 ~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 87 ERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999985 77999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 870 LVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1288)
Q Consensus 870 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1288)
++.+|+.++..++..+..++..++..+...+..+.+.|.++|+++||+++.++++.++|.+..++..+...+........
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888888888888888999999999999999999999999999999999998888877777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000777 950 FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS 1029 (1288)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 1029 (1288)
..+...+.+...++.+++|++++..|.+++|.++++..+...+..|+..+......+..+..+.+|+.++++.+++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 56666666666777888999999999999999999999999999999999999999999999999999998765442211
Q ss_pred CCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeec
Q 000777 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1288)
Q Consensus 1030 ~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1109 (1288)
........+..+.|+|+||+|+||+++++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 11111111234579999999999864335799999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1110 ~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
++++.+++|++|+||||||++|+|||||||.++. ++.++++++++++.+++.+++.++|+|+||++||+|.+|||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 9999999999999999999999999999999974 467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhc
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHh
Q 000777 1270 IPDGFYASLIALH 1282 (1288)
Q Consensus 1270 ~~~g~y~~L~~~~ 1282 (1288)
+ ++.|++|++.|
T Consensus 564 ~-~~~~~~l~~~~ 575 (576)
T TIGR02204 564 K-GGLYARLARLQ 575 (576)
T ss_pred c-CChHHHHHhhc
Confidence 6 89999999765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-78 Score=752.38 Aligned_cols=564 Identities=28% Similarity=0.393 Sum_probs=486.9
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1288)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 787 (1288)
+++..+.+++++.++..++.+++..++....+++++.+++....... ...+.++++++.++..+..++..++...
T Consensus 8 ~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (585)
T TIGR01192 8 VRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREADR 82 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777777777777788888888888888887653211 1112222223333444455555555556
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000777 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1288)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 867 (1288)
...++..++|.++|++++++|++||++ +++|++++|+++|++.+...+...+..++..++.+++.++++++++|.+++
T Consensus 83 ~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 160 (585)
T TIGR01192 83 LAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI 160 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777789999999999999984 789999999999999999999999988888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1288)
Q Consensus 868 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1288)
++++++|+++++.....+..++..++......+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+......
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (585)
T TIGR01192 161 VLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA 240 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888777777777778888899999999999999999999999999999999988888777777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000777 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1288)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 1027 (1288)
....+..++..+..++++++|++++..|.+++|.++++..+...+..++..+.........+..+.+|+.++.+.+++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 320 (585)
T TIGR01192 241 LASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 66666667777777888899999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCe
Q 000777 1028 PSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1288)
Q Consensus 1028 ~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~ 1107 (1288)
..... ...+...+.|+|+||+|+|++. .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||.
T Consensus 321 ~~~~~-~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 397 (585)
T TIGR01192 321 EPADA-PELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397 (585)
T ss_pred CCccC-CCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence 11111 1112234579999999999743 36899999999999999999999999999999999999999999999999
Q ss_pred eccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhH
Q 000777 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1108 di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1187 (1288)
|+++++.+.+|++++||||||.+|++||+|||.++. +++++++++++++.+++++++.++|+|+||.+|++|.+|||||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq 476 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE 476 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHH
Confidence 999999999999999999999999999999999984 4679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhh
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||||+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|
T Consensus 477 ~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 477 RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHhh
Q 000777 1268 INIPDGFYASLIALHS 1283 (1288)
Q Consensus 1268 l~~~~g~y~~L~~~~~ 1283 (1288)
+++ +|.|+++++.+.
T Consensus 557 ~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 557 IQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHC-CChHHHHHHhCc
Confidence 996 899999998774
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-78 Score=756.37 Aligned_cols=565 Identities=24% Similarity=0.343 Sum_probs=478.1
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1288)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 125 (1288)
+++++.|.+++++ .++..+++.++..++.+..|++++.++|......+.. ......++++++++.++.+++.+++.+
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP--LGLVAGLAAAYVGLQLLAAGLHYAQSL 87 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556554433 3455666677777788888999999999765322111 111122233344555667788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000777 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1288)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (1288)
+....+.++..++|.+++++++++|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 88 LFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975 99999999999999999999999998999988888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1288)
Q Consensus 206 l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1288)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877777777777777777778888999999999999999999999999999999888877777666555
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000777 286 AAGIG-LGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1288)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 364 (1288)
..+.. ..+..++..+...+++++++. +..|.++.|.+++++.+......|+..+...+..+..+..+++|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 54432 222222222222222223333 5789999999999998888889999999999999999999999999999865
Q ss_pred CCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 000777 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1288)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~ 444 (1288)
++... . ...+...+.|+++||+|+|+. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 326 ~~~~~-~---~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 326 RQQYG-N---DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CccCC-C---CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 43211 1 111223467999999999973 35799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCC
Q 000777 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1288)
Q Consensus 445 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 524 (1288)
+||+|+++++.+++|++|+||||+|++|++||+|||.++. +.++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999997 688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecCh
Q 000777 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 525 gGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 604 (1288)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHHh
Q 000777 605 SKLVEDPEGAYSQLIRLQE 623 (1288)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~ 623 (1288)
+||++. ++.|+++++.+.
T Consensus 559 ~~L~~~-~~~y~~l~~~~~ 576 (592)
T PRK10790 559 QQLLAA-QGRYWQMYQLQL 576 (592)
T ss_pred HHHHhC-CCHHHHHHHHHh
Confidence 999987 789999987654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-78 Score=753.50 Aligned_cols=542 Identities=26% Similarity=0.424 Sum_probs=473.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Q 000777 734 ILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFD 813 (1288)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd 813 (1288)
+....++++..+++.+...... ......|.++++++.++..++.++..++....+.++..++|.++|++++++|++||+
T Consensus 10 ~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 88 (569)
T PRK10789 10 LQLIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL 88 (569)
T ss_pred HHHHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 3344556666777765432111 112233445555556667778888888889999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 814 EPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMKGFSA 892 (1288)
Q Consensus 814 ~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~ 892 (1288)
+ +++|++++|+++|++.++..+...+..++..++..+++++++ ++++|.+++++++++|+.+++.+...+...+..+
T Consensus 89 ~--~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~ 166 (569)
T PRK10789 89 R--HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFK 166 (569)
T ss_pred C--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 889999999999999999888888888888766666666555 5899999999999999988888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 893 DAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV 972 (1288)
Q Consensus 893 ~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv 972 (1288)
+.++..++..+.+.|.+.|+++||+|+.++.+.++|.+..++..+...+.....+....+...+..+...+.+++|++++
T Consensus 167 ~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv 246 (569)
T PRK10789 167 LAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMV 246 (569)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999988888887777776666666666667777888999999
Q ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEEC
Q 000777 973 EDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY 1052 (1288)
Q Consensus 973 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y 1052 (1288)
..|.+++|.++++..+......|+..+......+..+..+.+|+.++++.+++.+... ...+...+.|+|+||+|+|
T Consensus 247 ~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y 323 (569)
T PRK10789 247 VNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTY 323 (569)
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999988654322111 1112234679999999999
Q ss_pred CCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCch
Q 000777 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 1132 (1288)
Q Consensus 1053 ~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~ 1132 (1288)
+.. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+.+|++++||||+|++|+
T Consensus 324 ~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~ 402 (569)
T PRK10789 324 PQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS 402 (569)
T ss_pred CCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc
Confidence 753 4579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCC
Q 000777 1133 DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212 (1288)
Q Consensus 1133 gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSa 1212 (1288)
+||+|||.++. +++++++++++++.+++++++.++|+|+||.+|++|.+|||||||||+||||++++|+|||||||||+
T Consensus 403 ~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 403 DTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred ccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 99999999984 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHhhc
Q 000777 1213 LDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSS 1284 (1288)
Q Consensus 1213 LD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1284 (1288)
||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|++++..|..
T Consensus 482 LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 482 VDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 9999999999999998889999999999999999999999999999999999999986 7999999987643
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-81 Score=690.82 Aligned_cols=549 Identities=28% Similarity=0.396 Sum_probs=462.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 66 IGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGI------GSGIASFLQVTCWMITGERQATRIR 139 (1288)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~~~~~~~lr 139 (1288)
++..+.-+.....|.+..++.|.... +..... ...+.++++.+ ++.+++-+++++|....+-..+++-
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~lta---p~~~~~---~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie 295 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTA---PDTFQY---SLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIE 295 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcC---cchhhH---HHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHH
Confidence 33344444555667778888876542 111111 11222233322 2456777788888888888999999
Q ss_pred HHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHH
Q 000777 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLI-AFIKGWLLTLVMLSSIPLLA 218 (1288)
Q Consensus 140 ~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~l~l~~~~~~p~~~ 218 (1288)
..+|+|++.+++.|+-.+ ++|+++.-++...+.+. ++...+.++.-.++-+.++++. ...++|+.++++++++.+..
T Consensus 296 ~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~ 373 (790)
T KOG0056|consen 296 TELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYC 373 (790)
T ss_pred HHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Confidence 999999999999999875 89999988887777665 4444433333333333333333 34578889999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298 (1288)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1288)
.+...+.-+..+..++...++.+..+.-.+++-+.+|||.|++|+++.++|.+...++.+..+|......+....-+.+.
T Consensus 374 ~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii 453 (790)
T KOG0056|consen 374 YVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII 453 (790)
T ss_pred heeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 76666666667777777777888888889999999999999999999999999988888887776666555555555555
Q ss_pred HHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccC
Q 000777 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILD 378 (1288)
Q Consensus 299 ~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 378 (1288)
.+..+....+.+++|..+.+++|+.+.+..+++.+.+|+..+...+..++.+..-.++++++++++|++.+.+ ...+..
T Consensus 454 ~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a~pl~ 532 (790)
T KOG0056|consen 454 GLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GAPPLK 532 (790)
T ss_pred hhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CCCCcc
Confidence 5555566666778888999999999999999999999999999999999999999999999999988865433 223344
Q ss_pred CCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH
Q 000777 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1288)
Q Consensus 379 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 458 (1288)
...|.|+|+||+|.|+ +++++|+||||+++||+.+|+|||||+||||++++|.|+++.++|.|.+||+||+......+
T Consensus 533 ~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred ccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 5578999999999996 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
|++||+||||..|||+||..||.|++|.+++|++.+|++.+++||.|.++|+||+|.|||+|-.|||||||||||||+++
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHH
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1288)
++|.|++|||+|||||..||+.||.++.+++.+||.|+|+||++++-+||.|+|+++|+|+|.|+|+||+.+++|.|++|
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHhhc
Q 000777 619 IRLQEAN 625 (1288)
Q Consensus 619 ~~~~~~~ 625 (1288)
|+.|...
T Consensus 771 Wq~qqa~ 777 (790)
T KOG0056|consen 771 WQAQQAM 777 (790)
T ss_pred HHHHHhc
Confidence 9877553
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-80 Score=679.57 Aligned_cols=493 Identities=34% Similarity=0.475 Sum_probs=431.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000777 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLII-AFT 860 (1288)
Q Consensus 782 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 860 (1288)
..++...++.+...+--+.|.|+.++++.|.-+ +.+|.+..-+......++..+...+...+..++-+....++ ...
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 345667777888888889999999999999874 66787777777677677777777777766666665544444 446
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 000777 861 ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGI 940 (1288)
Q Consensus 861 ~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1288)
++|+.+++.++++.+++++......-.....+..+....+++..-.+++-+.+|+|.|+.|+.+..+|.+..+.+.++..
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 78999999998888888777666555556677888888999999999999999999999999999999999999998887
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000777 941 RQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII 1020 (1288)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~ 1020 (1288)
+....-.........+.........+.+...+..|.+|+|+++....++.....|+..++....+..++....+++++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 76554444444444444455556667788889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCc
Q 000777 1021 DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1288)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1100 (1288)
+.+.+....+..++..+-..|.|.|+||+|.|.. .+|+|+|+||++++|+++|+||+||+||||+.++|+|||++++|
T Consensus 241 ~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 8776654332222222234678999999999964 56899999999999999999999999999999999999999999
Q ss_pred eEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCC
Q 000777 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERG 1180 (1288)
Q Consensus 1101 ~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G 1180 (1288)
+|.|||+||+++..+++|+.||+||||.+||++|+..|+.||. ++++++|++.|++.+++++||.++|+||||.|||+|
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr-~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR-PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC-ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 9999999999999999999999999999999999999999995 589999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000777 1181 LQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVE 1260 (1288)
Q Consensus 1181 ~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive 1260 (1288)
-.||||||||+||||++|++|+||+||||||+||..||++||.+|++..+++|.++|||||+||.+||.|+||++|+|+|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhhhcCCCcHHHHHHH
Q 000777 1261 KGKHENLINIPDGFYASLIA 1280 (1288)
Q Consensus 1261 ~Gt~~eLl~~~~g~y~~L~~ 1280 (1288)
.|+|+||+++ +|.|++||.
T Consensus 478 rg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 478 RGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred cCcHHHHHHc-CChHHHHhc
Confidence 9999999997 999999985
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-77 Score=748.27 Aligned_cols=564 Identities=33% Similarity=0.529 Sum_probs=503.5
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 48 KLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCW 127 (1288)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 127 (1288)
.++++.++.+ ..+++++++.++.+++.+..|++++.+++....... ...+..++..++++.++.+++.+++.++.
T Consensus 4 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (571)
T TIGR02203 4 RLWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD----RSVLWWVPLVVIGLAVLRGICSFVSTYLL 78 (571)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554433 345667777888888888889999988886543211 12233344456667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000777 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1288)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 207 (1288)
...+.++..++|..+++++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++
T Consensus 79 ~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~ 157 (571)
T TIGR02203 79 SWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLT 157 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999875 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1288)
Q Consensus 208 l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1288)
+++++++|+++++..++.++.++...+.++..++..+.+.|.++|+++||.++.++.+.++|.+..++..+...+.....
T Consensus 158 ~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (571)
T TIGR02203 158 LIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAG 237 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 000777 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1288)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 367 (1288)
+....+..++..+..++++++|++++.+|.+++|.++++..++.....|+..+...+..+..++.+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (571)
T TIGR02203 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEK 317 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777888889999999999999999999999999999999999999999999999999999999866553
Q ss_pred ccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 000777 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1288)
Q Consensus 368 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 447 (1288)
+... ....+..+.|+++||+|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 318 ~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 318 DTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 2211 1112234679999999999753 46799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 448 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
+++++++.+++|++|+||||+|++|++|++|||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999999999999999999999999999999986 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhH
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1288)
|||||+||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|++++.|+|++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHH
Q 000777 607 LVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 607 l~~~~~~~~~~~~~~~ 622 (1288)
++++ ++.|++++..+
T Consensus 554 l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 554 LLAR-NGLYAQLHNMQ 568 (571)
T ss_pred HHHc-CCHHHHHHHHh
Confidence 9987 67888876543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-78 Score=681.17 Aligned_cols=555 Identities=27% Similarity=0.396 Sum_probs=467.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1288)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1288)
++.++++.+.+.......|.+++..+|..................+..|.++.++..++..++...+.+..+++....-.
T Consensus 32 v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~ 111 (591)
T KOG0057|consen 32 VFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSS 111 (591)
T ss_pred HHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566777778888999888876321111122233445566778888999999999999999999999999999
Q ss_pred HHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Q 000777 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF-LIAFIKGWLLTLVMLSSIPLLAM 219 (1288)
Q Consensus 141 ~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~l~l~~~~~~p~~~~ 219 (1288)
.+|.+++.+++++|.+. .+|++.+.+..-...|...+.-.+..++..++-+.... ++..-.+...+++++..+..+..
T Consensus 112 ~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a 190 (591)
T KOG0057|consen 112 DVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAA 190 (591)
T ss_pred HHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhe
Confidence 99999999999999875 89999999999999999888766666555444333322 33444556666666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299 (1288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1288)
+......+..+..++..++.+.+.+.+-+++.+-.+||.||.|+++.++|.....+..+.+.+.....++....-..+..
T Consensus 191 ~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs 270 (591)
T KOG0057|consen 191 FTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS 270 (591)
T ss_pred eEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH
Confidence 56666666666667777888999999999999999999999999999999999999998888877776666555555555
Q ss_pred HHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCC
Q 000777 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379 (1288)
Q Consensus 300 ~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 379 (1288)
+..+.+++.|..-+.++.+++|+++.....+..+..|+..+...+..+.++..-...++...+....+.. ...+...
T Consensus 271 v~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~ 347 (591)
T KOG0057|consen 271 VALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIEL 347 (591)
T ss_pred HHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCccc
Confidence 6666667777777888999999999888888888889998888888888887776666655433222111 1122233
Q ss_pred CcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHh
Q 000777 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1288)
Q Consensus 380 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 459 (1288)
.++.|+|+||+|+|+ +++++|+++||+|++||++||||+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|
T Consensus 348 ~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred CCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 456799999999997 45679999999999999999999999999999999999999 999999999999999999999
Q ss_pred cceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+.|||||||..||++||.+||.+|++.++++++.++|+.+++||.+.++|+||+|.|||+|..|||||||||+||||+++
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHH
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1288)
||+|+++|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++++|++.+.|+|+||+. +.+.|+++|
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w 583 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLW 583 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHh
Confidence 9999999999999999999999999999888999999999999999999999999999999999999999 589999998
Q ss_pred HHHh
Q 000777 620 RLQE 623 (1288)
Q Consensus 620 ~~~~ 623 (1288)
..|.
T Consensus 584 ~~~~ 587 (591)
T KOG0057|consen 584 TTQT 587 (591)
T ss_pred cccc
Confidence 7653
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-77 Score=741.90 Aligned_cols=525 Identities=23% Similarity=0.328 Sum_probs=450.2
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 48 KLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCW 127 (1288)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 127 (1288)
++++|.+++++ .+++.+++.++..++....|+++++++|...... . .......+..++++.++..++.++..++.
T Consensus 3 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02868 3 RILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEMP---P-VLYLSVAAVAVRAFGIGRAVFRYLERLVG 77 (529)
T ss_pred hHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556555444 3445666666777777788889999998754221 1 00111112222345566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000777 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1288)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 207 (1288)
...+.++..++|.+++++++++|.++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++
T Consensus 78 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 156 (529)
T TIGR02868 78 HDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAA 156 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999975 9999999999999999999998888889888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 208 LVMLSSIPLLAMSGGVMAIM-ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA 286 (1288)
Q Consensus 208 l~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1288)
+++++.+|++.++...+.++ .++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+....
T Consensus 157 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02868 157 LVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARA 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888876666555444 45556667778899999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 000777 287 AGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPE 366 (1288)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 366 (1288)
.+....+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+..+.++.+|+.++++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 316 (529)
T TIGR02868 237 TGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGP 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 87777777777777777888999999999999999999998888888889988888899999999999999999987654
Q ss_pred CccCCCC-CcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 000777 367 IDAYDTK-GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1288)
Q Consensus 367 ~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 445 (1288)
.+..... ....++..+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 317 RPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred cCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3221111 11111224579999999999742 46999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCCh
Q 000777 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1288)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 525 (1288)
||+|++++ .+++|++|+||||+|+||++||+|||++|.|+.++++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 395 ~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 395 DGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred CCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCc
Q 000777 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1288)
Q Consensus 526 Gqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l 581 (1288)
|||||||||||++++|+|||||||||+||+++|+.+++.++++.+++|+|+||||+
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999988899999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-77 Score=807.88 Aligned_cols=569 Identities=20% Similarity=0.277 Sum_probs=464.7
Q ss_pred CCccHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 000777 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1288)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 121 (1288)
+.+.+..|+.|++...+...++.+++.++..++....+++++.+.+........ .....+..+|++++++..++.+
T Consensus 948 g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~----~~~~~~~~iy~~l~i~~~~~~~ 1023 (1522)
T TIGR00957 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQ----NNTSLRLSVYGALGILQGFAVF 1023 (1522)
T ss_pred CcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC----CCcchHHHHHHHHHHHHHHHHH
Confidence 344566666666543333323333333444445555666777766532111011 1111234466777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1288)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 201 (1288)
+..++..+.+.++..++|..++++++++|++|||++ ++|+++||+++|++.++..++..+..++..++.+++.++++++
T Consensus 1024 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~ 1102 (1522)
T TIGR00957 1024 GYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILL 1102 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999975 9999999999999999999999999999999999999988888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 000777 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1288)
Q Consensus 202 ~~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1288)
.+|.++++++.++++++++..++.+..+...+......++..+++.|+++|+++||+|++|+++.+++.+..+...+...
T Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1182 (1522)
T TIGR00957 1103 ATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88877666666666666666666666666666666778889999999999999999999999999998888877766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL-EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360 (1288)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~ 360 (1288)
.......+......++.. .++++.|...+. .+.+++|.+..++.+......++..+...+..+..++.+++|+.++
T Consensus 1183 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~ 1259 (1522)
T TIGR00957 1183 PSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEY 1259 (1522)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333333332222221 122333444443 5789999999889889888999999999999999999999999999
Q ss_pred hccCCCCccCCCCC--cccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000777 361 INRKPEIDAYDTKG--KILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1288)
Q Consensus 361 l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~ 438 (1288)
++.+++.+...... ...++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|.|+|+|
T Consensus 1260 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1260 SETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred hcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 98766532111111 1123456889999999999743 35799999999999999999999999999999999999999
Q ss_pred CCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccC
Q 000777 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1288)
Q Consensus 439 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 518 (1288)
++|+|.+||+|+++++.+++|++|+||||||.||+|||||||... .++++++++++++.+++++++.++|+||||.+||
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 999999999999999999999999999999999999999999833 2588999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEE
Q 000777 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1288)
Q Consensus 519 ~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i 598 (1288)
+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||+||++|+|
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred eEecChhHHhcCCCchHHHHHHH
Q 000777 599 VEKGTHSKLVEDPEGAYSQLIRL 621 (1288)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~~~~ 621 (1288)
+|.|+|+||+++ ++.|+++++.
T Consensus 1498 vE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1498 AEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999987 6899998754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-76 Score=736.44 Aligned_cols=564 Identities=27% Similarity=0.387 Sum_probs=483.5
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1288)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 125 (1288)
++++++|.+++++ .+++.+++.++..++.++.|++++.++|...... . ....++.+++++++..+..++..+
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKS--D-----VLPTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677765544 4456677777788888889999999999764321 1 111122222233444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000777 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1288)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (1288)
+....+.++..++|..++++++++|++||+++ ++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666777799999999999999975 89999999999999999999888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1288)
Q Consensus 206 l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1288)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888899999999999999999999999999999999988888777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000777 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1288)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 365 (1288)
..++...+..++..+..++++++|++++.+|.+++|.+++++.++.....|+..+...+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 66666666666666667778889999999999999999999888888888999999999999999999999999998655
Q ss_pred CCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 000777 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1288)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 445 (1288)
+.+... .....+...+.++++||+|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 432111 11111223457999999999973 246899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCCh
Q 000777 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1288)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 525 (1288)
||+++++++.+.+|++++||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChh
Q 000777 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 526 Gqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1288)
|||||++|||||+++|++||||||||+||+++++.+.+.|+++.+++|+|+||||++++..||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988889999999999999889999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 000777 606 KLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1288)
+++++ ++.|++++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 78999988655
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-76 Score=740.34 Aligned_cols=564 Identities=29% Similarity=0.416 Sum_probs=481.5
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1288)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 125 (1288)
+++++++.++.+. .+.+.+++.++..++....|++++.++|...... ......+.+++++++..+..++..+
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
T PRK13657 7 YARVLQYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAISGKG-------DIFPLLAAWAGFGLFNIIAGVLVAR 78 (588)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654433 3445555666667777778889999998764321 1112222333334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000777 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1288)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (1288)
+..+...++..++|.+++++++++|+.+|++. ++|++++|+++|++.+...+...+..++..++.+++.++++++++|.
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 79 HADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666777899999999999999975 99999999999999999888888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1288)
Q Consensus 206 l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1288)
+++++++++|+.+++..++.+..++..++.++..++..+.+.|.++|+++||.|+.++.+.++|.+..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000777 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1288)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 365 (1288)
..+....+..++..+..++++++|++++.+|.+++|.+++++.++.....|+..+...+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 76666666666666677778889999999999999999999988888889999999999999999999999999987654
Q ss_pred CCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 000777 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1288)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 445 (1288)
+.+... .........+.|+++||+|+|++ ++++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 318 DVRDPP-GAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred ccCCCC-CCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 422111 11111223457999999999973 246999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCCh
Q 000777 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1288)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 525 (1288)
||+|+++++.+++|++|+||||+|++|++||+|||+++.|+.++++++.+++.+++++++.++|+|+||.+|++|.+|||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChh
Q 000777 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 526 Gqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1288)
|||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999987889999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 000777 606 KLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1288)
++++. ++.|.+++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (588)
T PRK13657 555 ELVAR-GGRFAALLRAQ 570 (588)
T ss_pred HHHHC-CChHHHHHHHh
Confidence 99987 78899988754
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=738.86 Aligned_cols=544 Identities=25% Similarity=0.372 Sum_probs=474.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q 000777 72 GLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDV 151 (1288)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 151 (1288)
.++..+.|++++.++|...... .. ......++.+++++.++.+++.++..++....+.++..++|..++++++++|+
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQH-MT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3444566778888888754221 11 11222333445555566777888888888889999999999999999999999
Q ss_pred hhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 152 AFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA-FIKGWLLTLVMLSSIPLLAMSGGVMAIMISK 230 (1288)
Q Consensus 152 ~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~l~~~~~~p~~~~~~~~~~~~~~~ 230 (1288)
++|++. ++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.++.++
T Consensus 85 ~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 85 EFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999875 89999999999999999888777777777766666665555 5899999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 231 MSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGG 310 (1288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (1288)
..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+....+...+..+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999988888888777777776666666666666777788999
Q ss_pred HHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCCcccEEEEeEE
Q 000777 311 KLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVY 390 (1288)
Q Consensus 311 ~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 390 (1288)
+++.+|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++.+... ...+...+.|+++|++
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEE
Confidence 9999999999999999988888889999999999999999999999999998765432211 1112234679999999
Q ss_pred EECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCC
Q 000777 391 FSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1288)
Q Consensus 391 ~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1288)
|+|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+++++++..++|++|+||+|+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999742 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 000777 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1288)
Q Consensus 471 l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpt 550 (1288)
+|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+||||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHHHHHhh
Q 000777 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1288)
Q Consensus 551 s~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1288)
|+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|++++++ ++.|++++..+..
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999998888999999999999999999999999999999999999987 6899999876643
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-79 Score=709.27 Aligned_cols=484 Identities=29% Similarity=0.450 Sum_probs=378.3
Q ss_pred cEEEEeEEEECCCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC----CcEEEECCeeCCCCCHHH
Q 000777 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGINLKEFQLQW 457 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 457 (1288)
-++++|++..|....+ .++++||||++.+||++||||+|||||||+.+.|.|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975432 25999999999999999999999999999999999999987 899999999998888765
Q ss_pred H---h-cceEEEcCCCC-CCc--hhHHHHHhc----CCCCCCH---HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCC
Q 000777 458 I---R-KKIGLVSQEPV-LFT--GSIKDNIAY----GKDDATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1288)
Q Consensus 458 ~---r-~~i~~v~Q~~~-l~~--~ti~~ni~~----~~~~~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 523 (1288)
+ | +.|+||||+|. .+| .||.+-|.- ......+ ++..+.++.++ +|+-... ...+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vg-------l~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVG-------LPDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcC-------CCChhhh--ccCCccc
Confidence 4 3 68999999985 444 355555542 1111111 12222222222 3322111 4578899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeE
Q 000777 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1288)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~ 600 (1288)
|||||||+.||+||+.+|++||+||||++||+.++..|.+.|+++.+ +.++|+|||++..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999873 6799999999999987 99999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCC
Q 000777 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPS 680 (1288)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1288)
.|+.+++++++...|.+..-... +
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a~-------------------------------------------p------------- 259 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAAV-------------------------------------------P------------- 259 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhhC-------------------------------------------C-------------
Confidence 99999999987766654221000 0
Q ss_pred CCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhch
Q 000777 681 GQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDS 760 (1288)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1288)
. .... ...
T Consensus 260 -----------~-~~~~-~~~----------------------------------------------------------- 267 (539)
T COG1123 260 -----------R-LGDE-KII----------------------------------------------------------- 267 (539)
T ss_pred -----------C-cccc-ccc-----------------------------------------------------------
Confidence 0 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHH
Q 000777 761 RFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840 (1288)
Q Consensus 761 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~ 840 (1288)
.
T Consensus 268 -------------------------------------------------------~------------------------ 268 (539)
T COG1123 268 -------------------------------------------------------R------------------------ 268 (539)
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhch
Q 000777 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920 (1288)
Q Consensus 841 l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~ 920 (1288)
T Consensus 269 -------------------------------------------------------------------------------- 268 (539)
T COG1123 269 -------------------------------------------------------------------------------- 268 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000777 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS 1000 (1288)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1288)
T Consensus 269 -------------------------------------------------------------------------------- 268 (539)
T COG1123 269 -------------------------------------------------------------------------------- 268 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCC--------CCcccccceeEEEeCCc
Q 000777 1001 SFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR--------PDVQVFRDLNLKIRAGK 1072 (1288)
Q Consensus 1001 ~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~--------~~~~vL~~vsl~I~~Ge 1072 (1288)
.+..... ....-++++||+.+|..+ ....+++||||+|++||
T Consensus 269 ---------------------~~~~~~~---------~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE 318 (539)
T COG1123 269 ---------------------LPRRGPL---------RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318 (539)
T ss_pred ---------------------ccccccc---------ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCC
Confidence 0000000 001237899999999742 12468999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCee--ccCCCHHHHhcceEEEccCCCCc---hhhHHHHHhcC--CCC
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE--IQKLQLKWLRQQMGLVSQEPVLF---NDTIRANIAYG--KGG 1145 (1288)
Q Consensus 1073 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d--i~~i~~~~lR~~i~~V~Qd~~Lf---~gTIreNl~~g--~~~ 1145 (1288)
++||||+||||||||.++|+|+.+|++|+|.++|.| .+.-+...+|+++.+|+|||+-. ..||+++|.-- ...
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~ 398 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG 398 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc
Confidence 999999999999999999999999999999999977 33334667889999999999632 57999998621 011
Q ss_pred C----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHH
Q 000777 1146 D----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVV 1221 (1288)
Q Consensus 1146 ~----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I 1221 (1288)
. ...+.+.+.++.+++..- .+......||||||||+||||||..+|++||+|||||+||+-+...|
T Consensus 399 ~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~V 468 (539)
T COG1123 399 GGSGAERRARVAELLELVGLPPE----------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468 (539)
T ss_pred ccchHHHHHHHHHHHHHcCCCHH----------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence 1 112345566777766531 24456778999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHHh
Q 000777 1222 QDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALH 1282 (1288)
Q Consensus 1222 ~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~ 1282 (1288)
.+.|+++.+ +.|.|+|||+++.++. ||||+||++|+|||.|+.+++.+++...|.+.....
T Consensus 469 lnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 469 LNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred HHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999988764 5899999999999987 999999999999999999999999999998876543
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=761.34 Aligned_cols=571 Identities=22% Similarity=0.321 Sum_probs=477.5
Q ss_pred cccCCccHHHHHHhhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHH
Q 000777 39 EKTESVPFYKLFTFADSA-DTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117 (1288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (1288)
+..+++++..|.+|++.. .+...++.+++.+...++.....+++..+.+.-..... . . .....+.++|.+++++..
T Consensus 796 ~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~-~-~-~~~~~~~~vY~~l~~~~~ 872 (1381)
T KOG0054|consen 796 RETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGT-T-T-VSTSFYLGVYALLGVASS 872 (1381)
T ss_pred HhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-c-C-CCcchHHHHHHHHHHHHH
Confidence 355677788888888763 23333333455555556666666666666554221110 0 0 123356777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFL 197 (1288)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i 197 (1288)
++.+++.+.+...+.+++.+||..++++++|.||+|||++ |+|+|+||+++|++.++..++..+..++..++.+++.++
T Consensus 873 ~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~ 951 (1381)
T KOG0054|consen 873 LLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV 951 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999984 999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHH
Q 000777 198 IAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAY 277 (1288)
Q Consensus 198 ~~~~~~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~ 277 (1288)
++.+..|+..++++.+..+++.+..+|.+-.+...+-....++...+++.|+++|+.|||+|+.|++|.+++....+...
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 99999998777666666666666666666666666666667889999999999999999999999999999988877776
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 278 KSGVQ---EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354 (1288)
Q Consensus 278 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 354 (1288)
+..+- ..+|.++...++..+..+..++...+. ..+..++|.+--.+.+.+.....++.+......+...+.++
T Consensus 1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~----~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SV 1107 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL----PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSV 1107 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 65443 456666666655444433333322221 12226678777777788888888888888999999999999
Q ss_pred HHHHHHhccCCCCccCCC-C--CcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHH
Q 000777 355 FKMFETINRKPEIDAYDT-K--GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1288)
Q Consensus 355 ~ri~~~l~~~~~~~~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~ 431 (1288)
+|+.++.+.++| .+... . .++.|+.+|.|+|+|++.+|.. ..++|||||||+|+|||+|||||++|||||||+++
T Consensus 1108 ERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp-~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~a 1185 (1381)
T KOG0054|consen 1108 ERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRP-NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILA 1185 (1381)
T ss_pred hHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC-CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHH
Confidence 999999987666 22211 1 2344667899999999999964 34789999999999999999999999999999999
Q ss_pred HHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCC
Q 000777 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1288)
Q Consensus 432 l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 511 (1288)
|.|+.+|.+|+|.|||.|+.++++++||++++++||||.||+||+|.|+. +...++|+++|+|++.|++.+.++++|+|
T Consensus 1186 LFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1186 LFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred HHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHHHhChHHHHhhCCcC
Confidence 99999999999999999999999999999999999999999999999998 55678999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEE
Q 000777 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1288)
Q Consensus 512 ~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~ 591 (1288)
+|+.|.|+|.|+|-||||.+||||||+++++||+|||+||++|++|+..||++|++..++||||.|+||++++.+||||+
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEeEecChhHHhcCCCchHHHHHH
Q 000777 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1288)
Q Consensus 592 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1288)
|||+|+|+|.|+|.+|++++++.|.++..
T Consensus 1345 Vld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1345 VLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred EeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999998888875543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-76 Score=738.19 Aligned_cols=568 Identities=34% Similarity=0.553 Sum_probs=490.4
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTC 126 (1288)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 126 (1288)
+.+++|.++..+ .+.+.+++.++.+++....|++++.++|......+ .......+.+++++.++..++.+++.++
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (576)
T TIGR02204 7 AALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS----SGLLNRYFAFLLVVALVLALGTAARFYL 81 (576)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544333 34456666777778888888999999987442211 1122233334445555667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000777 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206 (1288)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 206 (1288)
....+.++..++|..++++++++|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+
T Consensus 82 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (576)
T TIGR02204 82 VTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKL 160 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8999999999999999999999999999875 899999999999999999998888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA 286 (1288)
Q Consensus 207 ~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1288)
++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+....
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (576)
T TIGR02204 161 TSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRT 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888988888888888888888888999999999999999999999999999999999999888887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 000777 287 AGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPE 366 (1288)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 366 (1288)
......+..++..+..++++++|++++.+|.++.|.++++..+......|+..+...+..+..+..+.+|+.++++.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~ 320 (576)
T TIGR02204 241 RALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPD 320 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 55555555555556666777889999999999999999998888888899999999999999999999999999986554
Q ss_pred CccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Q 000777 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1288)
Q Consensus 367 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 446 (1288)
.+..........+..+.|+++||+|+|+.+.++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+|
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred CCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 22211111111122357999999999975433679999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
|.++++++..++|++|+||||+|++|++||+|||.++.|+.++++++++++.+++.++++++|+|++|.+|++|.+||||
T Consensus 401 g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 401 GVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred CEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhH
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1288)
||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|++++.|+|++
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHH
Q 000777 607 LVEDPEGAYSQLIRL 621 (1288)
Q Consensus 607 l~~~~~~~~~~~~~~ 621 (1288)
++++ ++.|++++..
T Consensus 561 l~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 561 LIAK-GGLYARLARL 574 (576)
T ss_pred HHHc-CChHHHHHhh
Confidence 9886 7888887754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-76 Score=796.30 Aligned_cols=570 Identities=19% Similarity=0.269 Sum_probs=434.1
Q ss_pred cCCccHHHHHHhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 000777 41 TESVPFYKLFTFADSADT-ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119 (1288)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 119 (1288)
.+.+.+..|.+|.+.... +.+++.+++.++..++....+++++.+.+..... . .....+++++++++++..++
T Consensus 896 ~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~--~----~~~~~~~~i~~~l~~~~~i~ 969 (1622)
T PLN03130 896 TGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK--T----HGPLFYNLIYALLSFGQVLV 969 (1622)
T ss_pred cCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--C----CchhHHHHHHHHHHHHHHHH
Confidence 345566677777654322 2222233333444444445556666666542211 1 11123455577778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199 (1288)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (1288)
.+++.+++.+.+.++..++|.+++++++++|++|||++ ++|+++||+++|++.++..++..+..++..++.+++.++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i 1048 (1622)
T PLN03130 970 TLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLI 1048 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985 99999999999999999999999999999988888888888
Q ss_pred HHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000777 200 FIKGWLLTLVMLSSIPLLAM-SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278 (1288)
Q Consensus 200 ~~~~~~l~l~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~ 278 (1288)
++++|.. +++++.+++++. +..++.+..++..+......++..+++.|+++|+++||+|++++++.+++.+..+...+
T Consensus 1049 ~~~~~~~-~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1127 (1622)
T PLN03130 1049 GIVSTIS-LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIR 1127 (1622)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 8888743 322222232222 22333344444444445567788999999999999999999999877776665555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEG-YN-----GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQA 352 (1288)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~-----~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 352 (1288)
..........+......++ ..+++++.+...+..+. .. .+.+..++.+.+....++..+...+..+..++.
T Consensus 1128 ~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~ 1204 (1622)
T PLN03130 1128 FTLVNMSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLN 1204 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211111111111111 11111222223333321 11 122222223344444556666666777889999
Q ss_pred HHHHHHHHhccCCCCccCCCCC--cccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHH
Q 000777 353 AAFKMFETINRKPEIDAYDTKG--KILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS 430 (1288)
Q Consensus 353 a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~ 430 (1288)
+.+|+.++++.+++.+...... .+.++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||++
T Consensus 1205 sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~ 1283 (1622)
T PLN03130 1205 AVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLN 1283 (1622)
T ss_pred HHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999998766532211111 1123446889999999999632 357999999999999999999999999999999
Q ss_pred HHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 000777 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510 (1288)
Q Consensus 431 ~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 510 (1288)
+|.|+|+|++|+|.+||+|+++++++++|++|++|||||.||+|||||||.++. +++++++++|++.++++++++++|+
T Consensus 1284 lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~ 1362 (1622)
T PLN03130 1284 ALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSL 1362 (1622)
T ss_pred HHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999876 5789999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEE
Q 000777 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI 590 (1288)
Q Consensus 511 g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i 590 (1288)
|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||
T Consensus 1363 GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrI 1442 (1622)
T PLN03130 1363 GLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 1442 (1622)
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEeEecChhHHhcCCCchHHHHHHHHh
Q 000777 591 AVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1288)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1288)
+||++|+|+|.|+|+||++++++.|+++++...
T Consensus 1443 lVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1443 LVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999876789999987543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-76 Score=731.03 Aligned_cols=527 Identities=25% Similarity=0.312 Sum_probs=457.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 719 PVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRS 798 (1288)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 798 (1288)
+.+..+++.+++.+++.+..+++++.+++........ ......+.++++++.++..++.+++.++..+.+.++..++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777888888888876421111 122334455566667778889999999999999999999999
Q ss_pred HHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000777 799 MCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878 (1288)
Q Consensus 799 ~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~ 878 (1288)
++|+++++.|..||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.+++++++.+|+.++
T Consensus 82 ~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999998 489999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000777 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLF 958 (1288)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1288)
+.+...++.+...++......+..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+..........+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888889999999999999999999999999999999998888877777666655555555555
Q ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccC
Q 000777 959 AFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILED 1038 (1288)
Q Consensus 959 ~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 1038 (1288)
+...+++.+++..+..|.+++|.++++..+......|+..+......+.++..+.+|+.++++.+++.... . ..++.
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~--~-~~~~~ 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK--A-PVTAA 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--c-CCCCC
Confidence 55555555566666799999999999988888899999999999999999999999999999754321111 1 11111
Q ss_pred CCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHh
Q 000777 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1288)
Q Consensus 1039 ~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 1118 (1288)
..+.|+|+||+|+||+. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 23579999999999854 34799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
++++||||||++|++||||||.++. ++++|+++++|++.++++++++++|+||||.+||+|.+|||||||||+||||++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999974 467999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEE
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVV 1253 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl 1253 (1288)
++|+|||||||||+||+++|+.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-75 Score=784.47 Aligned_cols=514 Identities=19% Similarity=0.274 Sum_probs=423.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHH
Q 000777 106 AVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKF 185 (1288)
Q Consensus 106 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 185 (1288)
+.+|+++.++..++.+++.++....+.+...++|..++++++++|++|||++ ++|+++||+++|++.++..+...+..+
T Consensus 1001 l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~ 1079 (1560)
T PTZ00243 1001 LYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYL 1079 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344445555555556666666667778889999999999999999999975 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH
Q 000777 186 LQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQA 265 (1288)
Q Consensus 186 ~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 265 (1288)
+..++.+++.++++++.+|.+.++++.++.+++.+...+.+..+...+......++..+++.|+++|+++||+|++|+.+
T Consensus 1080 ~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~ 1159 (1560)
T PTZ00243 1080 LQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLV 1159 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHH
Confidence 99999999988888888885443333222233333444555555555556667788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 266 MSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGK--LILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343 (1288)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 343 (1288)
.++|.+..+...+...+......+......++..+..+++.+++.. +...+.+++|.+..++.+...+..++..+...
T Consensus 1160 ~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~ 1239 (1560)
T PTZ00243 1160 MQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQ 1239 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888777666554444443333333333332222233322 22344578887777777777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccCC-------------------------CCCc----ccCCCcccEEEEeEEEECC
Q 000777 344 LSAFGAGQAAAFKMFETINRKPEIDAYD-------------------------TKGK----ILDDIRGDIELRDVYFSYP 394 (1288)
Q Consensus 344 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~-------------------------~~~~----~~~~~~~~i~~~~v~~~y~ 394 (1288)
+..+..++.+.+|+.++++..|+.+... .... +.++..|.|+|+||+|+|+
T Consensus 1240 ~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~ 1319 (1560)
T PTZ00243 1240 VATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYR 1319 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeC
Confidence 9999999999999999997543321000 0000 1112357899999999996
Q ss_pred CCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCch
Q 000777 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1288)
Q Consensus 395 ~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1288)
+. .+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||.||+|
T Consensus 1320 ~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g 1398 (1560)
T PTZ00243 1320 EG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG 1398 (1560)
T ss_pred CC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc
Confidence 42 35699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCC
Q 000777 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD-PRILLLDEATSAL 553 (1288)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~-~~illlDEpts~l 553 (1288)
||||||..+ .+++++++++|++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+|
T Consensus 1399 TIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaL 1477 (1560)
T PTZ00243 1399 TVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI 1477 (1560)
T ss_pred cHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccC
Confidence 999999865 46889999999999999999999999999999999999999999999999999996 8999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHHHHH
Q 000777 554 DAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 554 D~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1288)
|+++++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1478 D~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1478 DPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999889999999999999999999999999999999999999987688999998654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-75 Score=658.29 Aligned_cols=506 Identities=23% Similarity=0.358 Sum_probs=437.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000777 108 KFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQ 187 (1288)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~ 187 (1288)
..=++++++.+..|...+..+....++..++|.++|+++...+..-... .++||+++|+..|++.++..+-..+.+++.
T Consensus 63 ~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~ 141 (573)
T COG4987 63 GVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVV 141 (573)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHH
Confidence 3456788899999999999999999999999999999999999888876 489999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Q 000777 188 LMATFLGGFLIAFIKGWLLTLVMLSSIPLL-AMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266 (1288)
Q Consensus 188 ~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 266 (1288)
.+..+++..+..-+++|.+++.+...+.+. +++...+.++-++..++.....+...+.+.|.+.|....+.||.++.+.
T Consensus 142 a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~ 221 (573)
T COG4987 142 ALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYR 221 (573)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHH
Confidence 888888777777788888877555444443 4445556666677777777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000777 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA-LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS-PCL 344 (1288)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~-~~~ 344 (1288)
..+........+...+...+.++......++.....+ ..+|.+ -.+..|..+......+++.++....++..+. ..+
T Consensus 222 ~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~ 300 (573)
T COG4987 222 TALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAF 300 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhH
Confidence 9999888888888888888888777777666555554 444544 3455666664444444444444555555555 456
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCc
Q 000777 345 SAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSG 424 (1288)
Q Consensus 345 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsG 424 (1288)
....+...++.|+.++++++|+...++. . .+.....++++||+|+||++ ++++|+|+||++++||++||+|+||||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~-~--~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsG 376 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFPDE-Q--TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSG 376 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCCcc-c--cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCC
Confidence 7888999999999999998887544311 1 11111279999999999864 568999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHH
Q 000777 425 KSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504 (1288)
Q Consensus 425 KSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1288)
||||+++|.|.|+|++|+|.++|.++..++.+.+|+.|++++|.+++|++|+|||+.+++|++++|+++++++.++++++
T Consensus 377 KSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l 456 (573)
T COG4987 377 KSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456 (573)
T ss_pred HHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhh
Q 000777 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1288)
Q Consensus 505 i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~ 584 (1288)
+++.|+|++|.+||.|..||||||||+||||+|++|++++||||||.+||+.||+.+.+.+.+..++||+|+||||+..+
T Consensus 457 ~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~l 536 (573)
T COG4987 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL 536 (573)
T ss_pred HHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHHH
Q 000777 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1288)
Q Consensus 585 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1288)
+.||||+||++|+++++|+|++|+.+ ++.|.++++
T Consensus 537 e~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 537 ERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred hhcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999999999999996 899988764
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=718.81 Aligned_cols=538 Identities=21% Similarity=0.295 Sum_probs=461.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRI 796 (1288)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 796 (1288)
+++.++..++.+++..++....++++..+++......+ ......+..+++++.++..++.+++.++..+.+.++..++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666667777888888876652211 1122334445555666778888999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000777 797 RSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD-ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPL 875 (1288)
Q Consensus 797 r~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l 875 (1288)
|.++|+++++.|+.. .+...+++++|++.++..+.. .+..++..++.+ +.++++++++|++++++++.+|+
T Consensus 82 r~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999843 255688999999999998877 444444444444 44567889999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000777 876 IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFF 955 (1288)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1288)
++++.++..+..++..++..+..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....+....+..+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777778888889999999999999999999999999999999999888888877777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCcc
Q 000777 956 LLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTI 1035 (1288)
Q Consensus 956 ~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 1035 (1288)
+..+..++++++|++++..|.+++|.++++..+...+..|+..+......+..+..+.+|+.++++.+++.... ..
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~ 309 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CC
Confidence 77777778889999999999999999999999999999999999999999999999999999999765442211 11
Q ss_pred ccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH
Q 000777 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115 (1288)
Q Consensus 1036 ~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 1115 (1288)
.+...+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+
T Consensus 310 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 310 LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999753 35799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
.+|++++||||||.+|++|++|||.++. +++++++++++++.++++++++++|+|+||.+|++|.+|||||||||+|||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999763 368999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|++++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||+++
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 9999999999999999999999999999999875 68999999999999999999999999999999999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-75 Score=718.78 Aligned_cols=525 Identities=24% Similarity=0.341 Sum_probs=457.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1288)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1288)
+.+++++.++.+++.+..|++.++++|....... ....+..+++.+++++++..++.+++.++....+.++..++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGE---PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777778888889999999997631111 1122334455566677788899999999999999999999999
Q ss_pred HHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000777 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1288)
Q Consensus 141 ~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~ 220 (1288)
.++++++++|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++++++.+|+..++
T Consensus 82 ~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 99999999999999999999888888888888888888999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1288)
..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..........+..++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888999999999999999999999999999999999988888777776666665555555554444
Q ss_pred HHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCC
Q 000777 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1288)
Q Consensus 301 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 380 (1288)
..++++.++++.+..|.++.|.+++++.+......|+..+...+..+..+..+++|+.++++.+++.... .......
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~~~~~ 317 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APVTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCCCCCC
Confidence 4444445666677799999999998888888888899999999999999999999999999854332111 1111112
Q ss_pred cccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhc
Q 000777 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1288)
Q Consensus 381 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 460 (1288)
.+.|+++||+|+|++. ++++|+|+||+|+|||+++||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 3579999999999743 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
+|+||+|+|++|++||+|||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEE
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l 593 (1288)
|+|+|||||||+||+++++.+++.++++.+++|+|+||||+++++.||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-75 Score=785.24 Aligned_cols=570 Identities=19% Similarity=0.263 Sum_probs=433.7
Q ss_pred cCCccHHHHHHhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 000777 41 TESVPFYKLFTFADSADT-ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119 (1288)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 119 (1288)
.+.+.+..|++|.+.... +.+++.+++.++..++.....+++..+.+.... .. .....++.+|++++++..++
T Consensus 893 ~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~--~~----~~~~~~l~~y~~l~~~~~~~ 966 (1495)
T PLN03232 893 TGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP--KS----YSPGFYIVVYALLGFGQVAV 966 (1495)
T ss_pred cCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CC----CCcchHHHHHHHHHHHHHHH
Confidence 344566677777755322 222222333333333333333444444332110 00 11234566677888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199 (1288)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (1288)
.+++.++..+.+.++..++|.+++++++++|++|||++ ++|+++||+++|++.+++.+...+..++..++.+++.++++
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~ 1045 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 99999999999999999999998888888888888888887
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000777 200 FIKGWLLTLVMLSSIPLLAMSG-GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278 (1288)
Q Consensus 200 ~~~~~~l~l~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~ 278 (1288)
++++|.. +++++.+++++.+. .++.+..++..+......++..+++.|+++|+++||+|++++++.+++.+..+...+
T Consensus 1046 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~ 1124 (1495)
T PLN03232 1046 GTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIR 1124 (1495)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 7777533 22222222222222 223333344555556677888999999999999999999999887777666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE-EGYN-----GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQA 352 (1288)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~~-----~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 352 (1288)
..........+....... +..+++++.|...+.. +.+. .+.+..++.+......++..+...+..+..++.
T Consensus 1125 ~~~~~~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 1201 (1495)
T PLN03232 1125 FTLANTSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLN 1201 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222111111111111 1111222223333332 2221 111222334445555677788888899999999
Q ss_pred HHHHHHHHhccCCCCccCCCCC--cccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHH
Q 000777 353 AAFKMFETINRKPEIDAYDTKG--KILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS 430 (1288)
Q Consensus 353 a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~ 430 (1288)
+.+|+.++++.+++.+...... .+.++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||++
T Consensus 1202 s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~ 1280 (1495)
T PLN03232 1202 SVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLN 1280 (1495)
T ss_pred HHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999998766533211111 1123445789999999999532 357999999999999999999999999999999
Q ss_pred HHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 000777 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510 (1288)
Q Consensus 431 ~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 510 (1288)
+|.|+++|++|+|.+||+|+++++.+++|++|+||||||.||+|||||||.++. ++++++++++++.++++++++++|+
T Consensus 1281 lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~ 1359 (1495)
T PLN03232 1281 ALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPF 1359 (1495)
T ss_pred HHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999999999875 6889999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEE
Q 000777 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI 590 (1288)
Q Consensus 511 g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i 590 (1288)
|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|
T Consensus 1360 GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrI 1439 (1495)
T PLN03232 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKI 1439 (1495)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEeCCEEeEecChhHHhcCCCchHHHHHHHHh
Q 000777 591 AVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1288)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1288)
+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1440 lVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1440 LVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999886679999986543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-73 Score=703.34 Aligned_cols=532 Identities=22% Similarity=0.296 Sum_probs=457.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1288)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1288)
+..+++.++..++..+.|++++.++|......+ ...+..+++.++++.++..++.+++.++....+.++..++|.+
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 84 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS----VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQP 84 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667778899999987653211 1223334444555667778889999999999999999999999
Q ss_pred HHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000777 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1288)
Q Consensus 142 ~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~ 220 (1288)
++++++++|+. ..+...+++++|++.+++.+.. .+..++..++.++ .++++++++|.+++++++.+|+++++
T Consensus 85 ~~~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 85 IFAASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999983 2356788999999999998876 4555555555444 44678999999999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1288)
..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+....+..++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIV 237 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777877888888888999999999999999999999999999999999998888887777777776666666666666
Q ss_pred HHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCC
Q 000777 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1288)
Q Consensus 301 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 380 (1288)
..++++++|++++.+|.+++|.+++++.++.....|+..+...+..+..+..+.+|+.++++.+++.+.. ...+..
T Consensus 238 ~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~ 313 (544)
T TIGR01842 238 LQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCC
Confidence 6667788999999999999999999998888889999999999999999999999999999765543211 111223
Q ss_pred cccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhc
Q 000777 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1288)
Q Consensus 381 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 460 (1288)
.+.++++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|+
T Consensus 314 ~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 4679999999999742 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
.++||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987777889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhc
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
|++||||||||+||+++++.+.+.++++. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999885 5799999999999988899999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-74 Score=723.09 Aligned_cols=504 Identities=27% Similarity=0.408 Sum_probs=372.7
Q ss_pred ccEEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCC---------
Q 000777 382 GDIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--------- 451 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--------- 451 (1288)
..|+++|++++|+... +.++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3599999999996321 347999999999999999999999999999999999999999999999997552
Q ss_pred -CCCHH---HHh-cceEEEcCCC--CCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCcc---cccc
Q 000777 452 -EFQLQ---WIR-KKIGLVSQEP--VLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGID---TLVG 517 (1288)
Q Consensus 452 -~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~ 517 (1288)
..+.. .+| ++||||+|+| .++. .||+|||.++.. ..+..+..+ .+.+.++.+ |+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~ 163 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQV--RIPEAQTILS 163 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChhhHHh
Confidence 22322 233 5799999998 5665 599999987531 122222111 122334444 442 3466
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEe
Q 000777 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIH 594 (1288)
Q Consensus 518 ~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~ 594 (1288)
....+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.++++.+ ++|+|+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 77889999999999999999999999999999999999999999999999853 6899999999999876 99999999
Q ss_pred CCEEeEecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCccccc
Q 000777 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISV 674 (1288)
Q Consensus 595 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1288)
+|++++.|++++++..+...|..-... . . .. . .
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~~~~l~~--~-~--~~-----------------------~---------------~---- 276 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPYTRALLA--A-V--PQ-----------------------L---------------G---- 276 (623)
T ss_pred CCeecccCCHHHhhcCCCChhhhhhhh--c-c--Cc-----------------------c---------------c----
Confidence 999999999988865433222210000 0 0 00 0 0
Q ss_pred ccCCCCCCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 000777 675 SFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754 (1288)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1288)
. ..+. . .+ . ..
T Consensus 277 -------~----~~~~-~---~~-~-~~---------------------------------------------------- 287 (623)
T PRK10261 277 -------A----MKGL-D---YP-R-RF---------------------------------------------------- 287 (623)
T ss_pred -------c----cccc-c---CC-c-cc----------------------------------------------------
Confidence 0 0000 0 00 0 00
Q ss_pred cchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHH
Q 000777 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVR 834 (1288)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~ 834 (1288)
+...-+.+.
T Consensus 288 -----------------------------------------------------~~~~~~~~~------------------ 296 (623)
T PRK10261 288 -----------------------------------------------------PLISLEHPA------------------ 296 (623)
T ss_pred -----------------------------------------------------ccccccccc------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000777 835 ALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRT 914 (1288)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~t 914 (1288)
T Consensus 297 -------------------------------------------------------------------------------- 296 (623)
T PRK10261 297 -------------------------------------------------------------------------------- 296 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Q 000777 915 VASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994 (1288)
Q Consensus 915 Ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~ 994 (1288)
T Consensus 297 -------------------------------------------------------------------------------- 296 (623)
T PRK10261 297 -------------------------------------------------------------------------------- 296 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCC--------CcccccceeE
Q 000777 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRP--------DVQVFRDLNL 1066 (1288)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~--------~~~vL~~vsl 1066 (1288)
...+....... +....-++++||++.|+.+. ..++|+||||
T Consensus 297 -------------------------~~~~~~~~~~~------~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~ 345 (623)
T PRK10261 297 -------------------------KQEPPIEQDTV------VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSF 345 (623)
T ss_pred -------------------------ccCcccccccc------cCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEe
Confidence 00000000000 00012489999999996311 2369999999
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHHhcceEEEccCC--CCch-hhHHHHHh
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQQMGLVSQEP--VLFN-DTIRANIA 1140 (1288)
Q Consensus 1067 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~~i~~V~Qd~--~Lf~-gTIreNl~ 1140 (1288)
+|++||++||||+||||||||+++|+|+.+|++|+|.++|.++...+. ..+|++|+||||+| .++. .|+.+|+.
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~ 425 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIM 425 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999987654 34678999999998 3664 69999997
Q ss_pred cCC--CCCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCC
Q 000777 1141 YGK--GGDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214 (1288)
Q Consensus 1141 ~g~--~~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD 1214 (1288)
+.. ..... .+++.++++..++.+ .........||||||||++|||||+.+|+|||||||||+||
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 426 EPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 421 01111 234555666666531 11233456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCcHHHH-HHH
Q 000777 1215 AESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYAS-LIA 1280 (1288)
Q Consensus 1215 ~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~-L~~ 1280 (1288)
+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|+|.|++++++.++...|.+ |+.
T Consensus 496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999988753 6899999999999976 9999999999999999999999876666755 443
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-74 Score=628.04 Aligned_cols=491 Identities=31% Similarity=0.442 Sum_probs=432.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 000777 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATF-LGGFLIAFIKG 203 (1288)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 203 (1288)
.++...++.+...+--..|.|++++++.|+-++ .+|.+..-+......|+..+...+...+..++-+ +.++++...++
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 445667777888888889999999999999875 8898877777777677666665555555444433 44456667789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 000777 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1288)
Q Consensus 204 ~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1288)
|+.++++++++.++.++......+.....++..++.+++++...+++-+..+||.|+.|+.+..+|.+.++.+.+...+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999988888877766666666666667778889999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000777 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1288)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 363 (1288)
....++....-..+......+....++..+.+|.+|.|+++....++.+...|+..+......+.+++.-.+++++.++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 66666555555555556666677778888999999999999988889999999999999999999999999999999988
Q ss_pred CCCCccCCCCCcccC-CCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 000777 364 KPEIDAYDTKGKILD-DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1288)
Q Consensus 364 ~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 442 (1288)
+.+..+.+. .++.+ ...|.+.|+||+|.|. +.+++|+++||++++|+++|+|||||+||||++++|.|+|++++|.
T Consensus 243 ~~~v~d~pd-a~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 243 EAEVSDAPD-APPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred chhhccCCC-CccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 776554322 22333 3457899999999996 4678999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCC
Q 000777 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1288)
Q Consensus 443 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 522 (1288)
|.+||+|+++...+.+|+.||+||||..||+.|+..||.+|.|++++++++.+++.++++++|+.+|+||+|.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEec
Q 000777 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 523 LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 602 (1288)
|||||||||||||+++++|+||+|||+||+||.+||+.|+.+|++..+++|.++|+|||+++.+||.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 000777 603 THSKLVEDPEGAYSQLIR 620 (1288)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1288)
+|+||+.. +|.|++||.
T Consensus 480 ~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAA-GGLYAEMWR 496 (497)
T ss_pred cHHHHHHc-CChHHHHhc
Confidence 99999998 899999984
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-73 Score=704.02 Aligned_cols=471 Identities=29% Similarity=0.462 Sum_probs=361.2
Q ss_pred cEEEEeEEEECCCC-CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCCCHH
Q 000777 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 456 (1288)
.++++|++++|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 125799999999999999999999999999999999999986 799999999999876643
Q ss_pred H---Hh-cceEEEcCCCC--CCc-hhHHHHHhcCC---CCCCHHHHHHHHHHcCHHHHHHhCCCCccc---cccCCCCCC
Q 000777 457 W---IR-KKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDT---LVGEHGTQL 523 (1288)
Q Consensus 457 ~---~r-~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t---~~~~~g~~L 523 (1288)
. +| ++|+||+|+|. ++. .|+++|+.++. ...+.++.. ..+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 2 33 58999999985 443 58999987431 111221111 1122334444 4432 245677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeE
Q 000777 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1288)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~ 600 (1288)
|||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 6899999999999876 99999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCC
Q 000777 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPS 680 (1288)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1288)
.|+++++...+...+.+
T Consensus 238 ~g~~~~~~~~~~~~~~~--------------------------------------------------------------- 254 (529)
T PRK15134 238 QNRAATLFSAPTHPYTQ--------------------------------------------------------------- 254 (529)
T ss_pred eCCHHHHhhCCCCHHHH---------------------------------------------------------------
Confidence 88876654320000000
Q ss_pred CCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhch
Q 000777 681 GQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDS 760 (1288)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1288)
.
T Consensus 255 -------------------------------------------------------------------~------------ 255 (529)
T PRK15134 255 -------------------------------------------------------------------K------------ 255 (529)
T ss_pred -------------------------------------------------------------------H------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHH
Q 000777 761 RFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840 (1288)
Q Consensus 761 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~ 840 (1288)
++ .. ..
T Consensus 256 ---------------------------------------~~-----------~~-~~----------------------- 261 (529)
T PRK15134 256 ---------------------------------------LL-----------NS-EP----------------------- 261 (529)
T ss_pred ---------------------------------------HH-----------Hh-Cc-----------------------
Confidence 00 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhch
Q 000777 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920 (1288)
Q Consensus 841 l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~ 920 (1288)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000777 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS 1000 (1288)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1288)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCC--------CCcccccceeEEEeCCc
Q 000777 1001 SFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR--------PDVQVFRDLNLKIRAGK 1072 (1288)
Q Consensus 1001 ~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~--------~~~~vL~~vsl~I~~Ge 1072 (1288)
...+. ... .. ...-|+++||+++|+.. .+.++|+|+||+|++||
T Consensus 262 --------------------~~~~~-~~~-~~------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge 313 (529)
T PRK15134 262 --------------------SGDPV-PLP-EP------ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE 313 (529)
T ss_pred --------------------ccccc-ccC-CC------CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCC
Confidence 00000 000 00 01138999999999621 12469999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH---HHhcceEEEccCC--CCch-hhHHHHHhcCCC--
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQQMGLVSQEP--VLFN-DTIRANIAYGKG-- 1144 (1288)
Q Consensus 1073 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~~i~~V~Qd~--~Lf~-gTIreNl~~g~~-- 1144 (1288)
++||+||||||||||+++|+|++ |++|+|++||.++...+.. .+|++++||||++ .+|. .|++||+.++..
T Consensus 314 ~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~ 392 (529)
T PRK15134 314 TLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH 392 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhc
Confidence 99999999999999999999998 5899999999999776643 3578899999998 3665 699999976410
Q ss_pred -CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHH
Q 000777 1145 -GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219 (1288)
Q Consensus 1145 -~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~ 1219 (1288)
...+ ++++.++++..++.+ ........+||||||||++|||||+.+|++|||||||++||+.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 462 (529)
T PRK15134 393 QPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462 (529)
T ss_pred cccCChHHHHHHHHHHHHHcCCCH----------HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHH
Confidence 0011 233445555555431 1123455689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCcHH
Q 000777 1220 VVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFY 1275 (1288)
Q Consensus 1220 ~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y 1275 (1288)
.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++++.+...|
T Consensus 463 ~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 463 QILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence 99999998753 7899999999999875 99999999999999999999987644333
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-74 Score=704.80 Aligned_cols=463 Identities=22% Similarity=0.369 Sum_probs=359.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeeCCCCCHHH-Hh
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IR 459 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r 459 (1288)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 489999999995 34699999999999999999999999999999999999996 8999999999998766543 46
Q ss_pred cceEEEcCCCCCCc-hhHHHHHhcCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
+.++||+|++.++. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998875 5999999986431 11111111 123445555 66555677788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCC
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1288)
||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999999999998875 46899999999999876 999999999999987764432110
Q ss_pred CchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCC
Q 000777 612 EGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEP 691 (1288)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1288)
+..+.
T Consensus 234 -----~~~~~---------------------------------------------------------------------- 238 (506)
T PRK13549 234 -----DIITM---------------------------------------------------------------------- 238 (506)
T ss_pred -----HHHHH----------------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHH
Q 000777 692 AGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALG 771 (1288)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 771 (1288)
T Consensus 239 -------------------------------------------------------------------------------- 238 (506)
T PRK13549 239 -------------------------------------------------------------------------------- 238 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000777 772 AGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTA 851 (1288)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~ 851 (1288)
++..+..
T Consensus 239 ---------------------------------------~~~~~~~---------------------------------- 245 (506)
T PRK13549 239 ---------------------------------------MVGRELT---------------------------------- 245 (506)
T ss_pred ---------------------------------------hhCcCcc----------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH
Q 000777 852 AAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931 (1288)
Q Consensus 852 ~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~ 931 (1288)
T Consensus 246 -------------------------------------------------------------------------------- 245 (506)
T PRK13549 246 -------------------------------------------------------------------------------- 245 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 932 CEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKS 1011 (1288)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1288)
T Consensus 246 -------------------------------------------------------------------------------- 245 (506)
T PRK13549 246 -------------------------------------------------------------------------------- 245 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHH
Q 000777 1012 AAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091 (1288)
Q Consensus 1012 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL 1091 (1288)
+ . .+. .... . ...-|+++||+++|+...+.++|+|+||+|++||++||+|+||||||||+++|
T Consensus 246 ---~---~--~~~-~~~~--~------~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i 308 (506)
T PRK13549 246 ---A---L--YPR-EPHT--I------GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCL 308 (506)
T ss_pred ---c---c--ccc-cccC--C------CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHH
Confidence 0 0 000 0000 0 01138999999999532234699999999999999999999999999999999
Q ss_pred hccCC-CCCceEEECCeeccCCCH-HHHhcceEEEccCC---CCc-hhhHHHHHhcCCCCC------CCHHHHHHHHHHh
Q 000777 1092 QRFYD-PDAGHITLDGVEIQKLQL-KWLRQQMGLVSQEP---VLF-NDTIRANIAYGKGGD------ATEAEIQAASEMA 1159 (1288)
Q Consensus 1092 ~rl~~-p~~G~I~idG~di~~i~~-~~lR~~i~~V~Qd~---~Lf-~gTIreNl~~g~~~~------~sd~ei~~al~~a 1159 (1288)
+|+++ |++|+|.++|.++...+. +.+|++++||||++ .+| ..|+.||+.++.... .+.++.+ .
T Consensus 309 ~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~ 383 (506)
T PRK13549 309 FGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL-----K 383 (506)
T ss_pred hCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHH-----H
Confidence 99998 599999999999865543 45677899999996 355 469999998642100 1111111 1
Q ss_pred chhHHHHhhhccccc-cccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q 000777 1160 NAHKFICSLQQGYDT-MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVV 1237 (1288)
Q Consensus 1160 ~l~~~i~~lp~Gldt-~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~I 1237 (1288)
.+.+.++.+ |++. ........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|
T Consensus 384 ~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~ 461 (506)
T PRK13549 384 TILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI 461 (506)
T ss_pred HHHHHHHhc--CccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 122333332 2321 2344567899999999999999999999999999999999999999999998864 47899999
Q ss_pred ecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1238 AHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1238 aHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
||+++.+.. ||++++|++|+++..|+++++.
T Consensus 462 sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 462 SSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 999999865 9999999999999999998874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=748.85 Aligned_cols=505 Identities=19% Similarity=0.270 Sum_probs=412.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000777 109 FVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQL 188 (1288)
Q Consensus 109 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~ 188 (1288)
+++++++..++.+++.+++.+.+.++..++|.++++++++.|++||++. ++|+++||+++|++.++..+...+..++..
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~ 1009 (1490)
T TIGR01271 931 YVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQL 1009 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556777888888889999999999999999999999999975 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHH
Q 000777 189 MATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268 (1288)
Q Consensus 189 ~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~ 268 (1288)
++.+++.++++++++|.++++++.++.+++++..++.+..+...+......++..+++.|++.|+.+||+|++++.+.++
T Consensus 1010 ~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~ 1089 (1490)
T TIGR01271 1010 TLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETL 1089 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHH
Confidence 99999999999999987655444333333334445555555555556667788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS--YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1288)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (1288)
+.+..+...+..........+......++..+. .+++++++.. ..+.|.+..++.+.+.+..++..+...+..
T Consensus 1090 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~ 1164 (1490)
T TIGR01271 1090 FHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSID 1164 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877654433332222222211111111111 1112222322 234444444445555666677777788888
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCCCC----------------CcccCCCcccEEEEeEEEECCCCCCCcccccceEEEe
Q 000777 347 FGAGQAAAFKMFETINRKPEIDAYDTK----------------GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISIS 410 (1288)
Q Consensus 347 ~~~~~~a~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~ 410 (1288)
+..++.+++|+.++++.+++.+..... .++.++..|.|+|+||+|+|+. ..+++|+|+||+|+
T Consensus 1165 le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~-~~~~vL~~is~~I~ 1243 (1490)
T TIGR01271 1165 VDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE-AGRAVLQDLSFSVE 1243 (1490)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC-CCcceeeccEEEEc
Confidence 999999999999999766553211100 0111344578999999999974 24689999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHH
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490 (1288)
Q Consensus 411 ~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~ 490 (1288)
+||++||||+||||||||+++|+|+++ ++|+|++||+|+++++.+.+|++|+||||+|.||+||||+||... ...+++
T Consensus 1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tde 1321 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDE 1321 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHH
Confidence 999999999999999999999999997 799999999999999999999999999999999999999999854 357899
Q ss_pred HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 000777 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570 (1288)
Q Consensus 491 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~ 570 (1288)
+++++++.+++++++.++|+|+||.++++|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+
T Consensus 1322 ei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~ 1401 (1490)
T TIGR01271 1322 EIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS 1401 (1490)
T ss_pred HHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHHHHHh
Q 000777 571 NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1288)
Q Consensus 571 ~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1288)
++|+|+||||++++..||+|+||++|+|+|.|+|++|+++ ++.|+++++...
T Consensus 1402 ~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1402 NCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred CCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 9999999999999999999999999999999999999975 789999886543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=619.65 Aligned_cols=473 Identities=31% Similarity=0.468 Sum_probs=369.3
Q ss_pred cEEEEeEEEECCC-CCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCCCHH
Q 000777 383 DIELRDVYFSYPA-RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1288)
Q Consensus 383 ~i~~~~v~~~y~~-~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 456 (1288)
-++++|++..|.. .....++++|||+|.+||++||||+||||||-..+.++|+++- -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4789999988852 2346799999999999999999999999999999999999864 479999999999888877
Q ss_pred HHh----cceEEEcCCCC--CCch-hHH----HHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCC
Q 000777 457 WIR----KKIGLVSQEPV--LFTG-SIK----DNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1288)
Q Consensus 457 ~~r----~~i~~v~Q~~~--l~~~-ti~----~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 522 (1288)
.+| .+|+++||+|. |-.- ||. |-|.+-.. ....+++.+.++.+++.+ -...+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhhhhCCcc
Confidence 765 38999999995 3221 444 44443211 111233444444444322 12235566789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEe
Q 000777 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1288)
Q Consensus 523 LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 599 (1288)
|||||||||.||.||..+|++||-||||+|||......|.+.|+++.+ +..+++|||+|..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999998864 5799999999999987 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCC
Q 000777 600 EKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLP 679 (1288)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1288)
|.|+.++++.+|...|.+..-..+... .+
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~aeP~g---------------------------------------~~------------ 266 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAEPSG---------------------------------------DP------------ 266 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcCCCC---------------------------------------CC------------
Confidence 999999999988888876542110000 00
Q ss_pred CCCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhc
Q 000777 680 SGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKD 759 (1288)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1288)
....
T Consensus 267 ------------~p~~---------------------------------------------------------------- 270 (534)
T COG4172 267 ------------PPLP---------------------------------------------------------------- 270 (534)
T ss_pred ------------CCCC----------------------------------------------------------------
Confidence 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHH
Q 000777 760 SRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839 (1288)
Q Consensus 760 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~ 839 (1288)
T Consensus 271 -------------------------------------------------------------------------------- 270 (534)
T COG4172 271 -------------------------------------------------------------------------------- 270 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 000777 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFC 919 (1288)
Q Consensus 840 ~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~ 919 (1288)
T Consensus 271 -------------------------------------------------------------------------------- 270 (534)
T COG4172 271 -------------------------------------------------------------------------------- 270 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Q 000777 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQS 999 (1288)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1288)
T Consensus 271 -------------------------------------------------------------------------------- 270 (534)
T COG4172 271 -------------------------------------------------------------------------------- 270 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCC--------CCcccccceeEEEeCC
Q 000777 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR--------PDVQVFRDLNLKIRAG 1071 (1288)
Q Consensus 1000 ~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~--------~~~~vL~~vsl~I~~G 1071 (1288)
.+...-++.+||...||-+ ....++++|||++++|
T Consensus 271 -------------------------------------~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~g 313 (534)
T COG4172 271 -------------------------------------EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG 313 (534)
T ss_pred -------------------------------------CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCC
Confidence 0000012222222222210 0124789999999999
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH---HhcceEEEccCCC--Cc-hhhHHHHHhcCC--
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LRQQMGLVSQEPV--LF-NDTIRANIAYGK-- 1143 (1288)
Q Consensus 1072 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR~~i~~V~Qd~~--Lf-~gTIreNl~~g~-- 1143 (1288)
|++||||+||||||||-.+|+|+.+++ |+|.++|.||...+.+. +|+++.+|+|||+ |= ..||.+-|.=|.
T Consensus 314 qTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v 392 (534)
T COG4172 314 QTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV 392 (534)
T ss_pred CeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh
Confidence 999999999999999999999999876 99999999999887655 7899999999996 21 346665554221
Q ss_pred -CCCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHH
Q 000777 1144 -GGDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218 (1288)
Q Consensus 1144 -~~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te 1218 (1288)
.+.. .++.+.+|++.+|++.-. ...-+..+|||||||||||||++-+|++++||||||+||-.-.
T Consensus 393 h~~~ls~~eR~~rv~~aL~EVGLDp~~----------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQ 462 (534)
T COG4172 393 HEPKLSAAERDQRVIEALEEVGLDPAT----------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQ 462 (534)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCChhH----------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHH
Confidence 1122 355688888888887543 2344678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCcHHHHH
Q 000777 1219 RVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278 (1288)
Q Consensus 1219 ~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1278 (1288)
.+|.+.|+++- .+-+-++|+|+|..++. ||+|+||.+|+|||+|+.++++++|...|-+-
T Consensus 463 aQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 99999998875 35699999999999986 99999999999999999999999999888653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-71 Score=683.35 Aligned_cols=533 Identities=18% Similarity=0.177 Sum_probs=434.7
Q ss_pred hHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 707 TRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1288)
Q Consensus 707 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 785 (1288)
.+++..+.+ ++++.+..+++.+++.++.....++++..+++.... ... .....++++.++..++.++..++.
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 77 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF-----LGQ--GSLFSFGGLCLLALLFRIGADIFP 77 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----ccc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666 777777777777777666666666666555442110 000 111223445556677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000777 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1288)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 865 (1288)
..++.++..++|.++|++++++|+.||++ +++|++++|+++|++.++.++.. +..++..++.+++.++++++++|.+
T Consensus 78 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 78 AYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999995 88999999999999999998864 7788888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHHH
Q 000777 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE--KVMQLYKKKCEAPMKTGIRQG 943 (1288)
Q Consensus 866 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 943 (1288)
++++++.+|+.+++.++..++.++...+.++..++..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...+..
T Consensus 155 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T TIGR01194 155 FAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999988888887777776666666677777788889999999999999999999954 557788888887777666555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000777 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRE 1023 (1288)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~ 1023 (1288)
........+..++..+...+.++++... |.+++|.+++++.+...+..|+..+......++++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~ 311 (555)
T TIGR01194 235 LIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444333333333333334444444433 7899999999999999999999999999999999999999999997532
Q ss_pred CCCCC----CCCCCc---cccCCCccEEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 000777 1024 SKIDP----SDESGT---ILEDVKGEIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1024 ~~~~~----~~~~~~---~~~~~~g~I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1094 (1288)
.+.++ ++.... ++....+.|+|+||+|+|++.+ .+++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 11110 000000 1112246799999999997532 23699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccc
Q 000777 1095 YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDT 1174 (1288)
Q Consensus 1095 ~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt 1174 (1288)
|+|++|+|++||.|+++++.+++|+++++|+|||++|++|+++|+ . +++++++++++++.+++++++.++|+||||
T Consensus 392 ~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 999999999999999999999999999999999999999999996 2 357899999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHH-H-cCCceEEEEecCchhhhhcCEEEE
Q 000777 1175 MVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDR-V-MKNRTTVVVAHRLSTIKNADMIAV 1252 (1288)
Q Consensus 1175 ~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~-~-~~~~TvI~IaHrl~ti~~~DrI~v 1252 (1288)
. .+|||||||||+||||++++|+|||||||||+||+++|+.+++.+.+ . .+++|+|+||||++++..||+|+|
T Consensus 468 ~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK 542 (555)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence 5 68999999999999999999999999999999999999999987643 3 468999999999999999999999
Q ss_pred EeCCEEEEe
Q 000777 1253 VKNGVIVEK 1261 (1288)
Q Consensus 1253 l~~G~Ive~ 1261 (1288)
|++|+|+|.
T Consensus 543 l~~G~i~~~ 551 (555)
T TIGR01194 543 LAAGCIVKD 551 (555)
T ss_pred EECCEEEEe
Confidence 999999975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-73 Score=696.36 Aligned_cols=456 Identities=22% Similarity=0.384 Sum_probs=355.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 461 (1288)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 489999999995 346999999999999999999999999999999999999999999999999998777554 3467
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCCC---------CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 531 (1288)
|+||+|++.++. .|++||+.++.... +.++.. ..+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998876 59999998763210 111111 1123445555 565556777789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 532 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 999999999999999999999999999999999998754 6899999999999976 99999999999998887665421
Q ss_pred CCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCC
Q 000777 610 DPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALG 689 (1288)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1288)
. +..+.. .. . .
T Consensus 235 ~------~~~~~~-------------------------------~~----~---------------------------~- 245 (510)
T PRK09700 235 D------DIVRLM-------------------------------VG----R---------------------------E- 245 (510)
T ss_pred H------HHHHHh-------------------------------cC----C---------------------------C-
Confidence 1 000000 00 0 0
Q ss_pred CCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHH
Q 000777 690 EPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLA 769 (1288)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1288)
.
T Consensus 246 --~----------------------------------------------------------------------------- 246 (510)
T PRK09700 246 --L----------------------------------------------------------------------------- 246 (510)
T ss_pred --c-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000777 770 LGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIS 849 (1288)
Q Consensus 770 l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~ 849 (1288)
.+-+. .
T Consensus 247 ---------------------------------------~~~~~--~--------------------------------- 252 (510)
T PRK09700 247 ---------------------------------------QNRFN--A--------------------------------- 252 (510)
T ss_pred ---------------------------------------ccccc--c---------------------------------
Confidence 00000 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH
Q 000777 850 TAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYK 929 (1288)
Q Consensus 850 ~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~ 929 (1288)
T Consensus 253 -------------------------------------------------------------------------------- 252 (510)
T PRK09700 253 -------------------------------------------------------------------------------- 252 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 930 KKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKA 1009 (1288)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1288)
T Consensus 253 -------------------------------------------------------------------------------- 252 (510)
T PRK09700 253 -------------------------------------------------------------------------------- 252 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHH
Q 000777 1010 KSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVS 1089 (1288)
Q Consensus 1010 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~ 1089 (1288)
. .+.. ... . ....|+++|+++.|. .+|+|+||+|++||++||+||||||||||++
T Consensus 253 ----------~-~~~~-~~~--~------~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk 307 (510)
T PRK09700 253 ----------M-KENV-SNL--A------HETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMN 307 (510)
T ss_pred ----------c-cccc-ccC--C------CCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 0 0000 000 0 011499999999762 2899999999999999999999999999999
Q ss_pred HHhccCCCCCceEEECCeeccCCCH-HHHhcceEEEccCC---CCch-hhHHHHHhcCCCC---------C-CCH----H
Q 000777 1090 LLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQMGLVSQEP---VLFN-DTIRANIAYGKGG---------D-ATE----A 1150 (1288)
Q Consensus 1090 lL~rl~~p~~G~I~idG~di~~i~~-~~lR~~i~~V~Qd~---~Lf~-gTIreNl~~g~~~---------~-~sd----~ 1150 (1288)
+|+|+++|++|+|.++|.++...+. ..+|++++||||++ .+|. -|++||+.++... . ... +
T Consensus 308 ~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (510)
T PRK09700 308 CLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQR 387 (510)
T ss_pred HHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHH
Confidence 9999999999999999999876543 45678999999984 4665 5999999864210 0 011 1
Q ss_pred HHHHHHHHhchhHHHHhhhcccc-ccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc
Q 000777 1151 EIQAASEMANAHKFICSLQQGYD-TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM 1229 (1288)
Q Consensus 1151 ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~ 1229 (1288)
++.++++..+ +. .........||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++..
T Consensus 388 ~~~~~l~~~~-----------l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 456 (510)
T PRK09700 388 TAENQRELLA-----------LKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA 456 (510)
T ss_pred HHHHHHHhcC-----------CCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHH
Confidence 2333333333 32 12344456799999999999999999999999999999999999999999998864
Q ss_pred -CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhh
Q 000777 1230 -KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1230 -~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
+++|+|+|||+++.+.. ||+|++|++|++++.+++.+
T Consensus 457 ~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 457 DDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 47899999999998865 99999999999999987744
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-72 Score=692.50 Aligned_cols=452 Identities=22% Similarity=0.373 Sum_probs=353.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 461 (1288)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999999995 346999999999999999999999999999999999999999999999999987655443 4578
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCC------CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
++||+|++.++. .|++||+.++... .+..+..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998875 5999999986431 11111111 123445555 565556677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 999999999999999999999999999999988753 6799999999999876 999999999999887754432110
Q ss_pred chHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCC
Q 000777 613 GAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPA 692 (1288)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1288)
.+.. .
T Consensus 232 ----~~~~------------------~----------------------------------------------------- 236 (501)
T PRK10762 232 ----SLIE------------------M----------------------------------------------------- 236 (501)
T ss_pred ----HHHH------------------H-----------------------------------------------------
Confidence 0000 0
Q ss_pred CCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHH
Q 000777 693 GPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGA 772 (1288)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 772 (1288)
.
T Consensus 237 --------------------------------------------------------~----------------------- 237 (501)
T PRK10762 237 --------------------------------------------------------M----------------------- 237 (501)
T ss_pred --------------------------------------------------------h-----------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 773 GSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAA 852 (1288)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~ 852 (1288)
+.. ..
T Consensus 238 ---------------------------------------~~~-~~----------------------------------- 242 (501)
T PRK10762 238 ---------------------------------------VGR-KL----------------------------------- 242 (501)
T ss_pred ---------------------------------------cCC-Cc-----------------------------------
Confidence 000 00
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHH
Q 000777 853 AGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKC 932 (1288)
Q Consensus 853 ~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~ 932 (1288)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 933 EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSA 1012 (1288)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1288)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 000777 1013 AASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1288)
Q Consensus 1013 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1092 (1288)
....+.... .. ....|+++||++ ++|+|+||+|++||++||+||||||||||+++|.
T Consensus 243 -------~~~~~~~~~--~~------~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~ 299 (501)
T PRK10762 243 -------EDQYPRLDK--AP------GEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLY 299 (501)
T ss_pred -------ccccccccc--CC------CCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHh
Confidence 000000000 00 011388999984 2799999999999999999999999999999999
Q ss_pred ccCCCCCceEEECCeeccCCCH-HHHhcceEEEccCC---CCc-hhhHHHHHhcCCCC---C----CC----HHHHHHHH
Q 000777 1093 RFYDPDAGHITLDGVEIQKLQL-KWLRQQMGLVSQEP---VLF-NDTIRANIAYGKGG---D----AT----EAEIQAAS 1156 (1288)
Q Consensus 1093 rl~~p~~G~I~idG~di~~i~~-~~lR~~i~~V~Qd~---~Lf-~gTIreNl~~g~~~---~----~s----d~ei~~al 1156 (1288)
|+++|++|+|.+||.++...+. +.+|++++||||+| .+| ..|++||+.++... . .+ ++++.+++
T Consensus 300 G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (501)
T PRK10762 300 GALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFI 379 (501)
T ss_pred CCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHH
Confidence 9999999999999999977654 34678899999997 344 57999999764210 0 11 12233333
Q ss_pred HHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEE
Q 000777 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTV 1235 (1288)
Q Consensus 1157 ~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI 1235 (1288)
+..++. +.........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|
T Consensus 380 ~~~~l~----------~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvi 449 (501)
T PRK10762 380 RLFNIK----------TPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449 (501)
T ss_pred HhcCCC----------CCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEE
Confidence 333321 122445567899999999999999999999999999999999999999999999875 478999
Q ss_pred EEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1236 VVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1236 ~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 450 ivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 450 LVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred EEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 99999999865 9999999999999999987764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-71 Score=620.45 Aligned_cols=530 Identities=23% Similarity=0.288 Sum_probs=468.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000777 727 AAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIH 806 (1288)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 806 (1288)
++.+..++....++++-.+.|.+..+. ...+.....++.+++.++..++.+++..++.+++.++..+++..+|...++
T Consensus 31 fS~~INiL~L~~~lyMLQVyDRVL~S~--s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~ 108 (580)
T COG4618 31 FSAVINLLALTGPLYMLQVYDRVLPSR--SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFS 108 (580)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 333344555556666777777776432 122334445555666777888999999999999999999999999999987
Q ss_pred CCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 807 MEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKF 886 (1288)
Q Consensus 807 ~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~ 886 (1288)
.+..- +..|+= ...-+|.++++.+++..-+..+-+.-.+.++++++|.++++++++.++...+++...++-.+.
T Consensus 109 ~~l~~-----~~~g~~-~Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~ 182 (580)
T COG4618 109 APLLR-----RGSGDG-LQPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERA 182 (580)
T ss_pred hHHhh-----cCCCcc-ccchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66542 223322 223479999999999888888888888899999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000777 887 MKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFY 966 (1288)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 966 (1288)
.++..++..+.....+.+...+..+.++|++.|+.....++|.+....+.....+..-..+...+++..+-+.....++.
T Consensus 183 t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg 262 (580)
T COG4618 183 TRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLG 262 (580)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888999999999999999999999999999999999999888888888888889999999999999999
Q ss_pred HHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEE
Q 000777 967 AGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELH 1046 (1288)
Q Consensus 967 ~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~ 1046 (1288)
.|.+++.+|++|.|.+++......-...|+......+..+..+..+.+|+.++++..+...+ .-+.|+.+|.+.++
T Consensus 263 ~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve 338 (580)
T COG4618 263 LGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVE 338 (580)
T ss_pred cceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEe
Confidence 99999999999999999998888899999999999999999999999999999987654322 22345567899999
Q ss_pred EEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEcc
Q 000777 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQ 1126 (1288)
Q Consensus 1047 nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Q 1126 (1288)
++++.-|+. ++|+|+|+||+++|||-+|||||||||||||.++|.|.++|++|.|.+||.|+++++.+++-++|||.||
T Consensus 339 ~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQ 417 (580)
T COG4618 339 RLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417 (580)
T ss_pred eeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcc
Confidence 999987755 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEE
Q 000777 1127 EPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLL 1206 (1288)
Q Consensus 1127 d~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlL 1206 (1288)
|..||+|||+|||+-. .++.+++.|.+|++.|+.||.|.++|+||||.||++|..|||||||||+|||||+.+|.+++|
T Consensus 418 dVeLF~GTIaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 418 DVELFDGTIAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred cceecCCcHHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 9999999999999743 247899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1207 DEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1207 DEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||-|+||.+-|+.+.++|.+.. +++|+|+||||.+.+..+|+|+||++|++..+|+-+|.+++
T Consensus 497 DEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999998875 78999999999999999999999999999999999999875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=695.92 Aligned_cols=458 Identities=24% Similarity=0.466 Sum_probs=351.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCC--CCCCcEEEEC---------------
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLID--------------- 446 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~~~--------------- 446 (1288)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 47899999995 246999999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---HHHHhcceEEEcCC-CCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHH
Q 000777 447 --------GINLK-------EFQ---LQWIRKKIGLVSQE-PVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKF 504 (1288)
Q Consensus 447 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~ 504 (1288)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++... ...++.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 33321 111 12456789999998 56775 5999999875321 2222111 112334
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCch
Q 000777 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1288)
Q Consensus 505 i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~ 582 (1288)
++.+ |++........+|||||||||+|||||+.+|++|||||||++||+.+.+++.+.|+++.+ ++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 4555 565556677789999999999999999999999999999999999999999999998853 689999999999
Q ss_pred hhhh-cCEEEEEeCCEEeEecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCC
Q 000777 583 TVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661 (1288)
Q Consensus 583 ~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1288)
.+.. ||+|++|++|++++.|+++++... +.
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----~~--------------------------------------------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV----FM--------------------------------------------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHH----HH---------------------------------------------
Confidence 9976 999999999999876654433110 00
Q ss_pred CCCCCCCCcccccccCCCCCCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 662 SSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLL 741 (1288)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1288)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhH
Q 000777 742 ISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGA 821 (1288)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~ 821 (1288)
. ..
T Consensus 262 -----------------------------------------------------------------------~--~~---- 264 (520)
T TIGR03269 262 -----------------------------------------------------------------------E--GV---- 264 (520)
T ss_pred -----------------------------------------------------------------------h--hc----
Confidence 0 00
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 822 IGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEA 901 (1288)
Q Consensus 822 l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1288)
.
T Consensus 265 ------------------------------------------------------------------~------------- 265 (520)
T TIGR03269 265 ------------------------------------------------------------------S------------- 265 (520)
T ss_pred ------------------------------------------------------------------h-------------
Confidence 0
Q ss_pred HHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHH
Q 000777 902 SQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSD 981 (1288)
Q Consensus 902 ~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~ 981 (1288)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCC--CCCcc
Q 000777 982 VFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS--RPDVQ 1059 (1288)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~--~~~~~ 1059 (1288)
+ ...+... + . ...-|+++||+++|++ ....+
T Consensus 266 ---------------------------------~----~~~~~~~-~---~------~~~~l~~~~l~~~~~~~~~~~~~ 298 (520)
T TIGR03269 266 ---------------------------------E----VEKECEV-E---V------GEPIIKVRNVSKRYISVDRGVVK 298 (520)
T ss_pred ---------------------------------h----hcccccc-C---C------CCceEEEeccEEEeccCCCCCce
Confidence 0 0000000 0 0 0114999999999963 11246
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEEC-Ce---eccCCC---HHHHhcceEEEccCCCCch
Q 000777 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD-GV---EIQKLQ---LKWLRQQMGLVSQEPVLFN 1132 (1288)
Q Consensus 1060 vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id-G~---di~~i~---~~~lR~~i~~V~Qd~~Lf~ 1132 (1288)
+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |. ++...+ ...+|++++||||++.+|.
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 378 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC
Confidence 9999999999999999999999999999999999999999999996 64 333332 2356788999999998886
Q ss_pred -hhHHHHHhcCCCCCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEe
Q 000777 1133 -DTIRANIAYGKGGDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207 (1288)
Q Consensus 1133 -gTIreNl~~g~~~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLD 1207 (1288)
.|++||+.+...... .++++.++++..++.+.- .+.........||||||||++|||||+.+|+|||||
T Consensus 379 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllD 452 (520)
T TIGR03269 379 HRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452 (520)
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999975210011 123445555555553200 000123445689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1208 EATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1208 EaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 453 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 453 EPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999988753 6899999999999876 99999999999999999998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=673.50 Aligned_cols=535 Identities=17% Similarity=0.140 Sum_probs=437.6
Q ss_pred ccHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000777 44 VPFYKLFTFAD-SADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1288)
Q Consensus 44 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 122 (1288)
...++++++++ +.+ ..+++++++.++.+++....|++++.+++.... ... . ....++++.++.+++.++
T Consensus 3 ~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~---~----~~~~~~~~~~~~~~~~~~ 72 (555)
T TIGR01194 3 AAIGEILALLRSPFP-AITAFSIALGLAGGLAIIALLASINNAIHEENF--LGQ---G----SLFSFGGLCLLALLFRIG 72 (555)
T ss_pred chHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccc---h----HHHHHHHHHHHHHHHHHH
Confidence 34567777776 543 345566667777777777777788777653210 000 1 111234455566788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1288)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (1288)
+.++....+.++..++|.++++|++++|+.+|++. ++|++++|+++|++.+++.+.. +..++..++++++.+++++++
T Consensus 73 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 150 (555)
T TIGR01194 73 ADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYL 150 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999975 9999999999999999998864 677788888888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH--HHHHHHHHHHHHHHHHH
Q 000777 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK--QAMSNYKKFLVTAYKSG 280 (1288)
Q Consensus 203 ~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~--~~~~~~~~~~~~~~~~~ 280 (1288)
+|.+++++++.+|+.+++..+..++.++...+.++..++.++.+.|.+.|++++|+|+.++ ...+++.+..++..+..
T Consensus 151 ~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
T TIGR01194 151 SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLH 230 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999988888888777777777777788888889999999999999999999999954 55677877777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360 (1288)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~ 360 (1288)
.+..........+..++..+..++++++|+.. +.++.|.+++++.+......|+..+...+..++.+.++++|+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~l 307 (555)
T TIGR01194 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554444444444444444444455555543 689999999999999888999999999999999999999999999
Q ss_pred hccCCC--Ccc--CCCCCc---ccCCCcccEEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHH
Q 000777 361 INRKPE--IDA--YDTKGK---ILDDIRGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1288)
Q Consensus 361 l~~~~~--~~~--~~~~~~---~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~ 431 (1288)
++.+++ ... ...... ++....+.|+++||+|+|++.+ .+++|+|+||++++||+++||||||||||||+++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~l 387 (555)
T TIGR01194 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKL 387 (555)
T ss_pred HhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHH
Confidence 753211 110 000000 1112246799999999997432 2369999999999999999999999999999999
Q ss_pred HHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCC
Q 000777 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1288)
Q Consensus 432 l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 511 (1288)
|+|+++|++|+|.+||+++++++.+++|++++||+|+|++|++|+++|+ .++.++++++++++.++++++++.+|+|
T Consensus 388 l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g 464 (555)
T TIGR01194 388 FCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGG 464 (555)
T ss_pred HhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccc
Confidence 9999999999999999999999999999999999999999999999995 3567788999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCceEEEEecCchhhhhcCE
Q 000777 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD-RI-MVNRTTVIVAHRLSTVRNADM 589 (1288)
Q Consensus 512 ~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~l~~~~~~d~ 589 (1288)
+||. .+||||||||++||||++++|+|||||||||+||+++++.+++.+. .+ .+++|+|+||||++++..||+
T Consensus 465 ~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~ 539 (555)
T TIGR01194 465 FSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ 539 (555)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 9994 7899999999999999999999999999999999999999988764 34 357999999999999989999
Q ss_pred EEEEeCCEEeEe
Q 000777 590 IAVIHRGKIVEK 601 (1288)
Q Consensus 590 i~~l~~G~i~~~ 601 (1288)
|++|++|++++.
T Consensus 540 i~~l~~G~i~~~ 551 (555)
T TIGR01194 540 IIKLAAGCIVKD 551 (555)
T ss_pred EEEEECCEEEEe
Confidence 999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-72 Score=686.75 Aligned_cols=454 Identities=22% Similarity=0.352 Sum_probs=351.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 461 (1288)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
|+||+|++.++. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999998886 4999999986421 1111111 1223455555 5554556677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCc
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1288)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+++..++..+...
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---- 229 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD---- 229 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC----
Confidence 99999999999999999999999999999988753 6899999999999876 99999999999975432100000
Q ss_pred hHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCC
Q 000777 614 AYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAG 693 (1288)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1288)
...+.
T Consensus 230 -~~~~~-------------------------------------------------------------------------- 234 (501)
T PRK11288 230 -RDQLV-------------------------------------------------------------------------- 234 (501)
T ss_pred -HHHHH--------------------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHH
Q 000777 694 PSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAG 773 (1288)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 773 (1288)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T PRK11288 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 774 SFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAA 853 (1288)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~ 853 (1288)
+.+ ......
T Consensus 235 ----------------------------~~~-------~~~~~~------------------------------------ 243 (501)
T PRK11288 235 ----------------------------QAM-------VGREIG------------------------------------ 243 (501)
T ss_pred ----------------------------HHh-------cCCCcc------------------------------------
Confidence 000 000000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHH
Q 000777 854 GLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCE 933 (1288)
Q Consensus 854 ~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~ 933 (1288)
T Consensus 244 -------------------------------------------------------------------------------- 243 (501)
T PRK11288 244 -------------------------------------------------------------------------------- 243 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 934 APMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAA 1013 (1288)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1288)
T Consensus 244 -------------------------------------------------------------------------------- 243 (501)
T PRK11288 244 -------------------------------------------------------------------------------- 243 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000777 1014 ASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1014 ~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1093 (1288)
. .....+. .. ....++++|++++ .+++|+||+|++||++||+||||||||||+++|+|
T Consensus 244 -~---~~~~~~~-----~~------~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 301 (501)
T PRK11288 244 -D---IYGYRPR-----PL------GEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYG 301 (501)
T ss_pred -c---ccccccc-----CC------CCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence 0 0000000 00 0114889999842 38999999999999999999999999999999999
Q ss_pred cCCCCCceEEECCeeccCCC-HHHHhcceEEEccCCC---Cc-hhhHHHHHhcCCCCC-------CCH----HHHHHHHH
Q 000777 1094 FYDPDAGHITLDGVEIQKLQ-LKWLRQQMGLVSQEPV---LF-NDTIRANIAYGKGGD-------ATE----AEIQAASE 1157 (1288)
Q Consensus 1094 l~~p~~G~I~idG~di~~i~-~~~lR~~i~~V~Qd~~---Lf-~gTIreNl~~g~~~~-------~sd----~ei~~al~ 1157 (1288)
+++|++|+|.+||.++...+ ...+|++++|+||++. +| ..|+.||+.++.... ... +++.++++
T Consensus 302 ~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (501)
T PRK11288 302 ATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIR 381 (501)
T ss_pred CCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHH
Confidence 99999999999999986543 3456789999999973 45 589999997642111 011 12333333
Q ss_pred HhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEE
Q 000777 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVV 1236 (1288)
Q Consensus 1158 ~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~ 1236 (1288)
..++. +.........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+
T Consensus 382 ~~~l~----------~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 451 (501)
T PRK11288 382 SLNIK----------TPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF 451 (501)
T ss_pred hcCcc----------cCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 33321 112344456899999999999999999999999999999999999999999998865 4789999
Q ss_pred EecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1237 VAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1237 IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|||+++.+.. ||+|++|++|++++.|+++|..
T Consensus 452 vsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 452 VSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred ECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999965 9999999999999999998765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-72 Score=685.97 Aligned_cols=458 Identities=21% Similarity=0.345 Sum_probs=351.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeeCCCCCHHH-Hhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 460 (1288)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999995 24699999999999999999999999999999999999987 7999999999998776544 457
Q ss_pred ceEEEcCCCCCCc-hhHHHHHhcCCCC------CCHHHHHHHHHHcCHHHHHHhCCCCccccc-cCCCCCCChHHHHHHH
Q 000777 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqkqri~ 532 (1288)
+|+||||++.++. .|++||+.++... ...++..+ .+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 8999999998875 5999999886421 11111111 223445555 454332 3456789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 533 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 99999999999999999999999999999999988754 6799999999999976 999999999999865532211000
Q ss_pred CCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCC
Q 000777 611 PEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGE 690 (1288)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1288)
...
T Consensus 232 ------~~~----------------------------------------------------------------------- 234 (500)
T TIGR02633 232 ------DII----------------------------------------------------------------------- 234 (500)
T ss_pred ------HHH-----------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHH
Q 000777 691 PAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLAL 770 (1288)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 770 (1288)
..+
T Consensus 235 --------------------------------------------------------~~~--------------------- 237 (500)
T TIGR02633 235 --------------------------------------------------------TMM--------------------- 237 (500)
T ss_pred --------------------------------------------------------HHH---------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000777 771 GAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIST 850 (1288)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~ 850 (1288)
+.. +
T Consensus 238 -----------------------------------------~~~-~---------------------------------- 241 (500)
T TIGR02633 238 -----------------------------------------VGR-E---------------------------------- 241 (500)
T ss_pred -----------------------------------------hCc-c----------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH
Q 000777 851 AAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKK 930 (1288)
Q Consensus 851 ~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~ 930 (1288)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 931 KCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAK 1010 (1288)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1288)
.
T Consensus 242 ----------------------------------------------~--------------------------------- 242 (500)
T TIGR02633 242 ----------------------------------------------I--------------------------------- 242 (500)
T ss_pred ----------------------------------------------c---------------------------------
Confidence 0
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHH
Q 000777 1011 SAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSL 1090 (1288)
Q Consensus 1011 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~l 1090 (1288)
.. ..+. ...+ . .+.-|+++|++++|+...+.++|+|+||+|++||++||+||||||||||+++
T Consensus 243 ------~~--~~~~-~~~~--~------~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~ 305 (500)
T TIGR02633 243 ------TS--LYPH-EPHE--I------GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQA 305 (500)
T ss_pred ------cc--cccc-cccC--C------CCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHH
Confidence 00 0000 0000 0 0114899999999953213469999999999999999999999999999999
Q ss_pred HhccCCC-CCceEEECCeeccCCC-HHHHhcceEEEccCC---CCch-hhHHHHHhcCCCC------CCC----HHHHHH
Q 000777 1091 LQRFYDP-DAGHITLDGVEIQKLQ-LKWLRQQMGLVSQEP---VLFN-DTIRANIAYGKGG------DAT----EAEIQA 1154 (1288)
Q Consensus 1091 L~rl~~p-~~G~I~idG~di~~i~-~~~lR~~i~~V~Qd~---~Lf~-gTIreNl~~g~~~------~~s----d~ei~~ 1154 (1288)
|+|+++| ++|+|.++|.++...+ ...+|++++||||++ .+|. .|+++|+.++... ... ++++.+
T Consensus 306 l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (500)
T TIGR02633 306 LFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGS 385 (500)
T ss_pred HhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHH
Confidence 9999995 8999999999986544 356788999999996 3554 6999999874210 011 122334
Q ss_pred HHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCce
Q 000777 1155 ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRT 1233 (1288)
Q Consensus 1155 al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~T 1233 (1288)
+++..++.+ .........||||||||++|||||+.+|++|||||||++||+.+.+.+++.|++.. ++.|
T Consensus 386 ~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 455 (500)
T TIGR02633 386 AIQRLKVKT----------ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVA 455 (500)
T ss_pred HHHhcCccC----------CCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCE
Confidence 444433310 11234456899999999999999999999999999999999999999999998864 4789
Q ss_pred EEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1234 TVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1234 vI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
+|+|||+++.+.. ||+|++|++|+++..++.+++
T Consensus 456 viivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 456 IIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred EEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999976 999999999999988765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=681.12 Aligned_cols=466 Identities=23% Similarity=0.394 Sum_probs=356.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHh-cc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 461 (1288)
.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 599999999996 24699999999999999999999999999999999999999999999999999877765544 57
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
++||+|++.++. .|++||+.++.... .+..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998886 59999999875321 11111 122344444 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchHHHH
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1288)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++... ..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------~~ 232 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD------DI 232 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH------HH
Confidence 999999999999999999999999988754 6899999999999876 999999999999999988776431 00
Q ss_pred HHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCCCCCCC
Q 000777 619 IRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPT 698 (1288)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1288)
.+.... . . . . . . . .
T Consensus 233 ~~~~~~-----~----------------~----------------~-~---------------------~-~-~--~--- 246 (510)
T PRK15439 233 IQAITP-----A----------------A----------------R-E---------------------K-S-L--S--- 246 (510)
T ss_pred HHHHhC-----c----------------c----------------c-c---------------------c-c-c--c---
Confidence 000000 0 0 0 0 0 0 0 0
Q ss_pred cccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHH
Q 000777 699 EEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLS 778 (1288)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 778 (1288)
. . .
T Consensus 247 ~-~----------------------------------------------------~------------------------ 249 (510)
T PRK15439 247 A-S----------------------------------------------------Q------------------------ 249 (510)
T ss_pred c-c----------------------------------------------------c------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 779 PAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA 858 (1288)
Q Consensus 779 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 858 (1288)
+. .+
T Consensus 250 -----------------------------~~-~~---------------------------------------------- 253 (510)
T PRK15439 250 -----------------------------KL-WL---------------------------------------------- 253 (510)
T ss_pred -----------------------------cc-cc----------------------------------------------
Confidence 00 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 000777 859 FTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938 (1288)
Q Consensus 859 ~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~ 938 (1288)
T Consensus 254 -------------------------------------------------------------------------------- 253 (510)
T PRK15439 254 -------------------------------------------------------------------------------- 253 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 939 GIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFA 1018 (1288)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 1018 (1288)
T Consensus 254 -------------------------------------------------------------------------------- 253 (510)
T PRK15439 254 -------------------------------------------------------------------------------- 253 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Q 000777 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098 (1288)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1098 (1288)
..+.. ...... .+.-|+++|++. .+|+|+||+|++||++||+||||||||||+++|.|+.+|+
T Consensus 254 --~~~~~-~~~~~~------~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~ 316 (510)
T PRK15439 254 --ELPGN-RRQQAA------GAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR 316 (510)
T ss_pred --ccccc-ccccCC------CCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 00000 000000 011389999983 1599999999999999999999999999999999999999
Q ss_pred CceEEECCeeccCCCHHH-HhcceEEEccCC---CCch-hhHHHHHhcCC---CCC-CCHHHHHHHHHHhchhHHHHhhh
Q 000777 1099 AGHITLDGVEIQKLQLKW-LRQQMGLVSQEP---VLFN-DTIRANIAYGK---GGD-ATEAEIQAASEMANAHKFICSLQ 1169 (1288)
Q Consensus 1099 ~G~I~idG~di~~i~~~~-lR~~i~~V~Qd~---~Lf~-gTIreNl~~g~---~~~-~sd~ei~~al~~a~l~~~i~~lp 1169 (1288)
+|+|.++|.++...+... +|++|+||||++ .+|. .|+.+|+.... ... ....+.+ ..+.+++..+
T Consensus 317 ~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~- 390 (510)
T PRK15439 317 GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL- 390 (510)
T ss_pred CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc-
Confidence 999999999998776554 467899999996 3564 59999985310 000 0111111 1122333332
Q ss_pred cccc-ccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-
Q 000777 1170 QGYD-TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN- 1246 (1288)
Q Consensus 1170 ~Gld-t~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~- 1246 (1288)
|++ .........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..
T Consensus 391 -~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~ 469 (510)
T PRK15439 391 -NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQM 469 (510)
T ss_pred -CCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 332 23445567899999999999999999999999999999999999999999999875 47899999999999976
Q ss_pred cCEEEEEeCCEEEEecChhhhhc
Q 000777 1247 ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1247 ~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
||+|++|++|+++..|+++++..
T Consensus 470 ~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 470 ADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred CCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999988764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-68 Score=705.78 Aligned_cols=220 Identities=23% Similarity=0.448 Sum_probs=189.8
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
..|+++|++++|++ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +....|+.
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 46999999999952 23579999999999999999999999999999999999999999999999999964 45667889
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
+|||||++.+|. .||+|||.++.. ..+.++.++ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 599999987522 112222111 123445555 6666677788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+|+|+|||||||+||+.+++.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998778999999999999976 999999999999999999998754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=674.04 Aligned_cols=454 Identities=21% Similarity=0.356 Sum_probs=348.8
Q ss_pred EEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH-HHHhcceEE
Q 000777 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464 (1288)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 464 (1288)
++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.++++++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 368999996 2469999999999999999999999999999999999999999999999999976554 345778999
Q ss_pred EcCCCCCCc-hhHHHHHhcCCCCC-----CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 465 VSQEPVLFT-GSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 465 v~Q~~~l~~-~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
|+|++.++. .|++||+.++.... +.++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998764 59999999764211 111111 1233455555 6666667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchHH
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1288)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------ 224 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------ 224 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH------
Confidence 9999999999999999999999999998875 46899999999999876 999999999999987765443100
Q ss_pred HHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCCCCC
Q 000777 617 QLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQ 696 (1288)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1288)
.....
T Consensus 225 ~~~~~--------------------------------------------------------------------------- 229 (491)
T PRK10982 225 KIIAM--------------------------------------------------------------------------- 229 (491)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 00000
Q ss_pred CCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHH
Q 000777 697 PTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFL 776 (1288)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 776 (1288)
T Consensus 230 -------------------------------------------------------------------------------- 229 (491)
T PRK10982 230 -------------------------------------------------------------------------------- 229 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 777 LSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI 856 (1288)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~ 856 (1288)
+ +.. +.
T Consensus 230 ---------------------------~-------~~~-~~--------------------------------------- 235 (491)
T PRK10982 230 ---------------------------M-------VGR-SL--------------------------------------- 235 (491)
T ss_pred ---------------------------H-------hCC-Cc---------------------------------------
Confidence 0 000 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHH
Q 000777 857 IAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPM 936 (1288)
Q Consensus 857 ~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~ 936 (1288)
T Consensus 236 -------------------------------------------------------------------------------- 235 (491)
T PRK10982 236 -------------------------------------------------------------------------------- 235 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 937 KTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASI 1016 (1288)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 1016 (1288)
.+
T Consensus 236 -----------------------------------------------------------------------------~~- 237 (491)
T PRK10982 236 -----------------------------------------------------------------------------TQ- 237 (491)
T ss_pred -----------------------------------------------------------------------------cc-
Confidence 00
Q ss_pred HHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC
Q 000777 1017 FAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1096 (1288)
..+.. . ... .+..|+++||+++|. ++|+|+||+|++||++||+|+||||||||+++|+|+.+
T Consensus 238 ----~~~~~--~-~~~------~~~~i~~~~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 299 (491)
T PRK10982 238 ----RFPDK--E-NKP------GEVILEVRNLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE 299 (491)
T ss_pred ----ccccc--c-CCC------CCcEEEEeCcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc
Confidence 00000 0 000 011489999999752 48999999999999999999999999999999999999
Q ss_pred CCCceEEECCeeccCCCHH-HHhcceEEEccCCC---Cch-hhHHHH-----HhcCCC--CCCCHHHHHHHHHHhchhHH
Q 000777 1097 PDAGHITLDGVEIQKLQLK-WLRQQMGLVSQEPV---LFN-DTIRAN-----IAYGKG--GDATEAEIQAASEMANAHKF 1164 (1288)
Q Consensus 1097 p~~G~I~idG~di~~i~~~-~lR~~i~~V~Qd~~---Lf~-gTIreN-----l~~g~~--~~~sd~ei~~al~~a~l~~~ 1164 (1288)
|++|+|.+||.++...+.. .+|+.++|+||++. +|. .|+.+| +.+... ...+..+..+ .+.++
T Consensus 300 p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 374 (491)
T PRK10982 300 KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWV 374 (491)
T ss_pred CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHH
Confidence 9999999999999876643 45788999999963 454 567666 332110 0011111111 11223
Q ss_pred HHhhhcccc-ccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCch
Q 000777 1165 ICSLQQGYD-TMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLS 1242 (1288)
Q Consensus 1165 i~~lp~Gld-t~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ 1242 (1288)
+..+ |+. -........||||||||++||||++.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++
T Consensus 375 l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 375 IDSM--RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred HHhc--CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 3333 221 12345567899999999999999999999999999999999999999999998764 5789999999999
Q ss_pred hhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1243 TIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1243 ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
.+.. |||+++|++|+++..++.+++
T Consensus 453 ~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 453 ELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHHhhCCEEEEEECCEEEEEEccccC
Confidence 9965 999999999999988877544
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=670.22 Aligned_cols=482 Identities=22% Similarity=0.352 Sum_probs=347.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG---AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeC---CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 78999999996 346999999999999999999999999999999999999999999999872 4699
Q ss_pred EEcCCCCCCc-hhHHHHHhcCCCCC----------------CHH---HHHHH----------HHHcCHHHHHHhCCCCcc
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKDDA----------------TTE---EIRVA----------TELANAAKFIDKLPQGID 513 (1288)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 513 (1288)
|++|++.++. .|++||+.++.... ... .+.+. .....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998775 59999998753100 000 00000 0011234455555 565
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEE
Q 000777 514 TLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA 591 (1288)
Q Consensus 514 t~~-~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~ 591 (1288)
... .....+||||||||++|||||+.+|++|||||||++||+.+.+++.+.|.+ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 433 345789999999999999999999999999999999999999999999875 37899999999999876 99999
Q ss_pred EEeCCEE-eEecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCc
Q 000777 592 VIHRGKI-VEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRH 670 (1288)
Q Consensus 592 ~l~~G~i-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1288)
+|++|++ ++.|+++++++.....+....+.. +. . . +.
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~------~~-----~--~---~~-------------------------- 261 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERLLADN------AK-----K--K---AQ-------------------------- 261 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHH------HH-----H--H---HH--------------------------
Confidence 9999999 478888877542110000000000 00 0 0 00
Q ss_pred ccccccCCCCCCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000777 671 SISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFF 750 (1288)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1288)
.+.+
T Consensus 262 ------------------------------------~~~~---------------------------------------- 265 (530)
T PRK15064 262 ------------------------------------IAEL---------------------------------------- 265 (530)
T ss_pred ------------------------------------HHHH----------------------------------------
Confidence 0000
Q ss_pred CCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhH
Q 000777 751 KPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADA 830 (1288)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~ 830 (1288)
+. ...+. . ...
T Consensus 266 ----------------------------------------------~~-~~~~~--------~--~~~------------ 276 (530)
T PRK15064 266 ----------------------------------------------QS-FVSRF--------S--ANA------------ 276 (530)
T ss_pred ----------------------------------------------HH-HHHHh--------h--ccc------------
Confidence 00 00000 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000777 831 ASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVG 910 (1288)
Q Consensus 831 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 910 (1288)
..
T Consensus 277 -------------------------------------------------------------~~----------------- 278 (530)
T PRK15064 277 -------------------------------------------------------------SK----------------- 278 (530)
T ss_pred -------------------------------------------------------------hh-----------------
Confidence 00
Q ss_pred hHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Q 000777 911 SIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLT 990 (1288)
Q Consensus 911 g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~ 990 (1288)
.....
T Consensus 279 ------------------------~~~~~--------------------------------------------------- 283 (530)
T PRK15064 279 ------------------------AKQAT--------------------------------------------------- 283 (530)
T ss_pred ------------------------hHHHH---------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCCCCCCCCC--CccccCCCccEEEEEEEEECCCCCCcccccceeE
Q 000777 991 MTAIGISQSSSFSSDSNKAKSAAASIFAI--IDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNL 1066 (1288)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~~--~~~~~~~~~~~~~--~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl 1066 (1288)
....++.+. ...++........ .......+..|+++||+++|++ .++|+|+||
T Consensus 284 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~ 340 (530)
T PRK15064 284 --------------------SRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNL 340 (530)
T ss_pred --------------------HHHHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEE
Confidence 000000000 0000000000000 0000001235999999999963 369999999
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCC--Cc-hhhHHHHHhcCC
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV--LF-NDTIRANIAYGK 1143 (1288)
Q Consensus 1067 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~--Lf-~gTIreNl~~g~ 1143 (1288)
+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++++|+||++. ++ ..|+++|+.+..
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 409 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWR 409 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhc
Confidence 99999999999999999999999999999999999999972 57999999974 44 369999996431
Q ss_pred CCCCCHHHHHHHHHHhchh-HHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHH
Q 000777 1144 GGDATEAEIQAASEMANAH-KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222 (1288)
Q Consensus 1144 ~~~~sd~ei~~al~~a~l~-~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~ 1222 (1288)
.....++++.++++..++. +. .......||||||||++||||++++|+||||||||++||+.+...+.
T Consensus 410 ~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 478 (530)
T PRK15064 410 QEGDDEQAVRGTLGRLLFSQDD-----------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLN 478 (530)
T ss_pred cCCccHHHHHHHHHHcCCChhH-----------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 1123455677777777663 22 23445689999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhhhhcC
Q 000777 1223 DALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIV-EKGKHENLINI 1270 (1288)
Q Consensus 1223 ~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv-e~Gt~~eLl~~ 1270 (1288)
+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 479 ~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 479 MALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999986 5699999999999876 9999999999998 78999998864
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-70 Score=670.34 Aligned_cols=453 Identities=21% Similarity=0.293 Sum_probs=346.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999963 45999999999999999999999999999999999999999999999998887666666777899
Q ss_pred EEcCCCCC--C-------chhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 464 LVSQEPVL--F-------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 464 ~v~Q~~~l--~-------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
|++|++.+ + ..|+++|+.++. ...+++.++ ++.+ |++........+||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQL---------AQQF--GITALLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHH---------HHHc--CCHhhhhCCcccCCHHHHHHHHHH
Confidence 99998753 2 458999886531 112223333 3333 444445666789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+++..|+++++....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~- 226 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA- 226 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch-
Confidence 999999999999999999999999999999998754 6799999999999876 9999999999999988877664320
Q ss_pred chHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCC
Q 000777 613 GAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPA 692 (1288)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1288)
....+.. . . . . . . .
T Consensus 227 -~~~~~~~---------~--------~-------~------~---------------------------------~-~-~ 240 (490)
T PRK10938 227 -LVAQLAH---------S--------E-------Q------L---------------------------------E-G-V 240 (490)
T ss_pred -hhhhhhh---------h--------h-------c------c---------------------------------C-c-c
Confidence 0000000 0 0 0 0 0 0 0
Q ss_pred CCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHH
Q 000777 693 GPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGA 772 (1288)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 772 (1288)
T Consensus 241 -------------------------------------------------------------------------------- 240 (490)
T PRK10938 241 -------------------------------------------------------------------------------- 240 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 773 GSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAA 852 (1288)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~ 852 (1288)
+.++.
T Consensus 241 ----------------------------------------~~~~~----------------------------------- 245 (490)
T PRK10938 241 ----------------------------------------QLPEP----------------------------------- 245 (490)
T ss_pred ----------------------------------------ccCcc-----------------------------------
Confidence 00000
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHH
Q 000777 853 AGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKC 932 (1288)
Q Consensus 853 ~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~ 932 (1288)
T Consensus 246 -------------------------------------------------------------------------------- 245 (490)
T PRK10938 246 -------------------------------------------------------------------------------- 245 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 933 EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSA 1012 (1288)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1288)
T Consensus 246 -------------------------------------------------------------------------------- 245 (490)
T PRK10938 246 -------------------------------------------------------------------------------- 245 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 000777 1013 AASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1288)
Q Consensus 1013 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1092 (1288)
. ++....... ....-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+
T Consensus 246 --------~-~~~~~~~~~------~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 307 (490)
T PRK10938 246 --------D-EPSARHALP------ANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLIT 307 (490)
T ss_pred --------c-ccccccccC------CCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 0 000000000 00124999999999963 35999999999999999999999999999999999
Q ss_pred ccCCC-CCceEEECCeeccC-CCHHHHhcceEEEccCCCCch---hhHHHHHhcCCC------CCCC---HHHHHHHHHH
Q 000777 1093 RFYDP-DAGHITLDGVEIQK-LQLKWLRQQMGLVSQEPVLFN---DTIRANIAYGKG------GDAT---EAEIQAASEM 1158 (1288)
Q Consensus 1093 rl~~p-~~G~I~idG~di~~-i~~~~lR~~i~~V~Qd~~Lf~---gTIreNl~~g~~------~~~s---d~ei~~al~~ 1158 (1288)
|+.+| ++|+|.++|.++.. .+...+|++|+|++|++.++. .|+++++.++.. .... ++++.++++.
T Consensus 308 G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (490)
T PRK10938 308 GDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDI 387 (490)
T ss_pred CCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHH
Confidence 98876 69999999987632 233457889999999986542 467777653210 0111 2345555555
Q ss_pred hchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEE
Q 000777 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK-N-RTTVV 1236 (1288)
Q Consensus 1159 a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~-~TvI~ 1236 (1288)
.++.+. ........||||||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ + .|+|+
T Consensus 388 ~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tvii 457 (490)
T PRK10938 388 LGIDKR----------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457 (490)
T ss_pred cCCchh----------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 554320 23344568999999999999999999999999999999999999999999998753 3 46999
Q ss_pred EecCchhhhh--cCEEEEEeCCEEEEec
Q 000777 1237 VAHRLSTIKN--ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1237 IaHrl~ti~~--~DrI~vl~~G~Ive~G 1262 (1288)
|||+++.+.. ||++++|++|+|++.-
T Consensus 458 vsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 458 VSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred EecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999964 7999999999998754
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=594.65 Aligned_cols=530 Identities=22% Similarity=0.298 Sum_probs=456.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 66 IGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKT 145 (1288)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 145 (1288)
+++.+..+.....|+++-.+.|......+ ...+....++.+++.++..++-+++.....+++.++-.++...+|..
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~s----~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a 105 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSRS----VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAA 105 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34444555566777888888888765432 23344444455666777888999999999999999999999999999
Q ss_pred HHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000777 146 ILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVM 224 (1288)
Q Consensus 146 ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~~~~~ 224 (1288)
.++.+..-- ..|+=..-+ +|.++++.+++. .+..++...|+.+. ++++|.++++++++.++...+++.+.++.
T Consensus 106 ~~~~~l~~~----~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~y-l~v~fl~Hp~lG~~a~~ga~iLv~la~ln 179 (580)
T COG4618 106 SFSAPLLRR----GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLY-LAVIFLFHPWLGLIALAGAIILVVLALLN 179 (580)
T ss_pred HHhhHHhhc----CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987776432 344333333 699999999975 55566666676655 56677888888988888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 225 AIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYAL 304 (1288)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1288)
-+..++-.++..+...+++....-+..+.++|++.|+.....++|.+.+..+.....+..-..+.+..+.-.+-.+....
T Consensus 180 ~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~ 259 (580)
T COG4618 180 ERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSA 259 (580)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888889999999999999999999999999999999998888888777777777777776776777778
Q ss_pred HHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCcccCCCcccE
Q 000777 305 SVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDI 384 (1288)
Q Consensus 305 ~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 384 (1288)
++..|++++++|++|+|.+++.-..+.....|+......+..+..++.+.+|+.+.+...|+..+ ..+.+..+|.+
T Consensus 260 iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L 335 (580)
T COG4618 260 VLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGAL 335 (580)
T ss_pred HHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCcee
Confidence 88899999999999999998877667777789999999999999999999999999988776332 24556667899
Q ss_pred EEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEE
Q 000777 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1288)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 464 (1288)
.++++++.=|+ .++++|+|+||++++||.+|||||||||||||.++|.|.++|++|.|++||-|+++++.+.+-++|||
T Consensus 336 ~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGY 414 (580)
T COG4618 336 SVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGY 414 (580)
T ss_pred eEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCc
Confidence 99999997654 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000777 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1288)
Q Consensus 465 v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~il 544 (1288)
.||+..||.|||+|||+=..++.+.+.+.+|++.++.||.|.++|+||||.+|+.|..|||||||||+||||||.||.++
T Consensus 415 LPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 415 LPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred CcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence 99999999999999999777788899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 545 llDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+||||-|+||.+.|..+.++|...+ +++|+|+||||++.+..+|+|++|++|++...|+.+|.+++
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999998876 47899999999999999999999999999999999998865
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-68 Score=710.22 Aligned_cols=214 Identities=21% Similarity=0.382 Sum_probs=182.9
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCceEEECCeeccCCCHHHH
Q 000777 1042 EIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD---PDAGHITLDGVEIQKLQLKWL 1117 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~l 1117 (1288)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|+|+.+ |++|+|++||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 3579999999999999999999999999999999999997 78899999999985 257
Q ss_pred hcceEEEccCCC-CchhhHHHHHhcCC----CCCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1118 RQQMGLVSQEPV-LFNDTIRANIAYGK----GGDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1118 R~~i~~V~Qd~~-Lf~gTIreNl~~g~----~~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
|++++||+|++. ++..|+||||.++. +...+++ .+.++++..++.+ -.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 899999999875 55789999998641 1123333 3556666666543 368999998889999999
Q ss_pred HHHHHHHHHcCCCC-EEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhh--hhcCEEEEEeCC-EEEEecC
Q 000777 1189 QRVAIARAIVKDPK-ILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTI--KNADMIAVVKNG-VIVEKGK 1263 (1288)
Q Consensus 1189 QrlaiARALlr~p~-ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti--~~~DrI~vl~~G-~Ive~Gt 1263 (1288)
||++|||||+.+|+ ||+||||||+||+.+...|++.|++.. +++|||+++|+++.. ..+|+|++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 679999999999974 569999999997 9999999
Q ss_pred hhh
Q 000777 1264 HEN 1266 (1288)
Q Consensus 1264 ~~e 1266 (1288)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 744
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=640.09 Aligned_cols=526 Identities=19% Similarity=0.199 Sum_probs=401.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 714 NKPEIPVILAGTIAAMANGVILPI-YGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKL 792 (1288)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 792 (1288)
.+++++.++.+++.+++..++... .+++...+++.... .... ...++++.++..++.++..++..+++.++
T Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (547)
T PRK10522 8 WRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT------SLLV--LPEFLGLLLLLMAVTLGSQLALTTLGHHF 79 (547)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444433 23444445543211 0001 11122223333456778888999999999
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000777 793 IQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVM 872 (1288)
Q Consensus 793 ~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~ 872 (1288)
..++|.++|++++++|++||++ +++|++++|+++|++.+...+. .++.++..++.++++++++++++|.++++++++
T Consensus 80 ~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 80 VYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999994 8899999999999999998765 477888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchH---HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000777 873 LPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE---EKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1288)
Q Consensus 873 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1288)
+|+.+++.++..+..++..++.++...+..+.+.|.++|+++++ ++.+ +.+.++|.+..++..+...+........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSA 235 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 99888887777777777777778888899999999999999995 4443 4567788887777766655544443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000777 950 FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS 1029 (1288)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 1029 (1288)
......+......+.++++..+ +..+.+....+..+......|+..+......+..+..+.+|+.++.+.+++.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 236 VNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 2222222222222233333222 1123333333333334456789999999999999999999999987543321111
Q ss_pred CCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeec
Q 000777 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1288)
Q Consensus 1030 ~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1109 (1288)
. . . +.+..+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+
T Consensus 313 ~-~-~-~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 313 R-P-Q-AFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred c-c-c-ccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 1 1 1 1111357999999999974 34699999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1110 ~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
++++.+++|++++||||||.+|++|+++| + .+.++++++++++.+++.+++.. |+|. .+|.+|||||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~q 456 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G--KPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKK 456 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHHhhccc---c--CchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHH
Confidence 99999999999999999999999999999 3 25788899999988888776642 4442 248899999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEe-cChhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEK-GKHEN 1266 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~-Gt~~e 1266 (1288)
||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |++.+
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence 9999999999999999999999999999999999997654 47999999999999999999999999999988 66665
Q ss_pred hhcC
Q 000777 1267 LINI 1270 (1288)
Q Consensus 1267 Ll~~ 1270 (1288)
-..+
T Consensus 537 ~~~~ 540 (547)
T PRK10522 537 AASR 540 (547)
T ss_pred hhhh
Confidence 5543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=652.78 Aligned_cols=484 Identities=24% Similarity=0.325 Sum_probs=340.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999952 35699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HcCHHHHHHhC
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDDA----------------TT----------EEIRVATE-------LANAAKFIDKL 508 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~----------------~~----------~~~~~~~~-------~~~~~~~i~~l 508 (1288)
|||+|+|.+++ .|++||+.++.... .. .++.+... ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 99999999886 49999998753110 00 00111111 11223344444
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-c
Q 000777 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1288)
Q Consensus 509 ~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 587 (1288)
|++ .......+|||||||||+|||||+.+|++|||||||++||+.+..++.+.|+++. +|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 453 2466778999999999999999999999999999999999999999999998873 599999999999976 9
Q ss_pred CEEEEEeCCEEe-EecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCC
Q 000777 588 DMIAVIHRGKIV-EKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGN 666 (1288)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1288)
|+|++|++|+++ ..|+++++.+........... ..+. . .
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~------~~~~--------------~-~------------------- 267 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEK------QEAA--------------R-Q------------------- 267 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHH------HHHH--------------H-H-------------------
Confidence 999999999986 778777664420000000000 0000 0 0
Q ss_pred CCCcccccccCCCCCCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 667 SSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVI 746 (1288)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1288)
......
T Consensus 268 --------------------------------------~~~~~~------------------------------------ 273 (556)
T PRK11819 268 --------------------------------------KALKRE------------------------------------ 273 (556)
T ss_pred --------------------------------------HHHHHH------------------------------------
Confidence 000000
Q ss_pred HHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHH
Q 000777 747 ETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARL 826 (1288)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~ 826 (1288)
. .|.+. .+.+
T Consensus 274 ------------------------------------------------------~--------~~~~~--~~~~------ 283 (556)
T PRK11819 274 ------------------------------------------------------L--------EWVRQ--SPKA------ 283 (556)
T ss_pred ------------------------------------------------------H--------HHHHH--hhhh------
Confidence 0 00000 0000
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 827 SADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVAN 906 (1288)
Q Consensus 827 ~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1288)
+. .
T Consensus 284 ----------------------------------------------------------~~----~--------------- 286 (556)
T PRK11819 284 ----------------------------------------------------------RQ----A--------------- 286 (556)
T ss_pred ----------------------------------------------------------hH----H---------------
Confidence 00 0
Q ss_pred HHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Q 000777 907 DAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVF 986 (1288)
Q Consensus 907 e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~ 986 (1288)
+..
T Consensus 287 ------------------------------~~~----------------------------------------------- 289 (556)
T PRK11819 287 ------------------------------KSK----------------------------------------------- 289 (556)
T ss_pred ------------------------------HHH-----------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCccccccee
Q 000777 987 FSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII-DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLN 1065 (1288)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~-~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vs 1065 (1288)
......++..+.. ...++......+ ......+.-|+++||+++|++ .++|+|+|
T Consensus 290 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~---~~~l~~is 344 (556)
T PRK11819 290 ---------------------ARLARYEELLSEEYQKRNETNEIFIP-PGPRLGDKVIEAENLSKSFGD---RLLIDDLS 344 (556)
T ss_pred ---------------------HHHHHHHHhhcccccccCCCceeecC-CCCCCCCeEEEEEeEEEEECC---eeeeccee
Confidence 0000000000000 000000000000 000011235999999999963 36999999
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCC-CCch-hhHHHHHhcCC
Q 000777 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLFN-DTIRANIAYGK 1143 (1288)
Q Consensus 1066 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~-~Lf~-gTIreNl~~g~ 1143 (1288)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+++ ++ +|+|+||++ .++. .|++||+.++.
T Consensus 345 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~ 413 (556)
T PRK11819 345 FSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGL 413 (556)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhc
Confidence 99999999999999999999999999999999999999964 21 599999997 5554 59999998642
Q ss_pred CC---CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHH
Q 000777 1144 GG---DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220 (1288)
Q Consensus 1144 ~~---~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~ 1220 (1288)
.. ...+++.+++++..++.+ .........||||||||++||||++.+|++|||||||++||+.+...
T Consensus 414 ~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 483 (556)
T PRK11819 414 DIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRA 483 (556)
T ss_pred ccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 10 112333444555444421 11234456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeC-CEEEE-ecChhhhhcC
Q 000777 1221 VQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKN-GVIVE-KGKHENLINI 1270 (1288)
Q Consensus 1221 I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-G~Ive-~Gt~~eLl~~ 1270 (1288)
+.+.|++. + .|+|+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 484 l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 484 LEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999986 3 599999999999876 999999986 88874 7888888765
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-67 Score=649.17 Aligned_cols=484 Identities=25% Similarity=0.354 Sum_probs=339.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
-++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 34699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCC-----------------CCH---------HHHHHHHHHcC-------HHHHHHhC
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD-----------------ATT---------EEIRVATELAN-------AAKFIDKL 508 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~-----------------~~~---------~~~~~~~~~~~-------~~~~i~~l 508 (1288)
+||+|+|+++. .|++||+.++... ... .++.++.+.++ +.+.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 5999999875311 000 11222222222 22334444
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-c
Q 000777 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1288)
Q Consensus 509 ~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 587 (1288)
|++. ......+||||||||++|||||+.+|++|||||||++||+.+..++.+.|+++ ++|+|+|||+++.+.. |
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 4432 45677899999999999999999999999999999999999999999999886 3699999999999976 9
Q ss_pred CEEEEEeCCEEe-EecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCC
Q 000777 588 DMIAVIHRGKIV-EKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGN 666 (1288)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1288)
|+|++|++|+++ ..|+++++.+.... . ...+.. +.++ . .
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~~~---~-~~~~~~--~~~~--------------~-~------------------- 265 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQKEK---R-LEQEEK--EESA--------------R-Q------------------- 265 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHHHH---H-HHHHHH--HHHH--------------H-H-------------------
Confidence 999999999976 67887776542000 0 000000 0000 0 0
Q ss_pred CCCcccccccCCCCCCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 667 SSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVI 746 (1288)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1288)
T Consensus 266 -------------------------------------------------------------------------------- 265 (552)
T TIGR03719 266 -------------------------------------------------------------------------------- 265 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHH
Q 000777 747 ETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARL 826 (1288)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~ 826 (1288)
..+. +... |.. +.+.
T Consensus 266 -----------------------------------------------~~~~-~~~~--------~~~--~~~~------- 280 (552)
T TIGR03719 266 -----------------------------------------------KALK-RELE--------WVR--SSPK------- 280 (552)
T ss_pred -----------------------------------------------HHHH-HHHH--------HHH--hhhh-------
Confidence 0000 0000 000 0000
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 827 SADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVAN 906 (1288)
Q Consensus 827 ~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1288)
.... ..
T Consensus 281 ----------------------------------------------------------------~~~~-----~~----- 286 (552)
T TIGR03719 281 ----------------------------------------------------------------ARQA-----KS----- 286 (552)
T ss_pred ----------------------------------------------------------------hHHH-----HH-----
Confidence 0000 00
Q ss_pred HHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Q 000777 907 DAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVF 986 (1288)
Q Consensus 907 e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~ 986 (1288)
.....++
T Consensus 287 ---------------~~~~~~~---------------------------------------------------------- 293 (552)
T TIGR03719 287 ---------------KARLARY---------------------------------------------------------- 293 (552)
T ss_pred ---------------HHHHHHH----------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCccccccee
Q 000777 987 FSLTMTAIGISQSSSFSSDSNKAKSAAASIFA-IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLN 1065 (1288)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~-~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vs 1065 (1288)
++..+ ....+++......+. .....+.-|+++||+++|++ .++|+|+|
T Consensus 294 ---------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~---~~~l~~is 342 (552)
T TIGR03719 294 ---------------------------EELLSQEFQKRNETAEIYIPP-GPRLGDKVIEAENLSKGFGD---KLLIDDLS 342 (552)
T ss_pred ---------------------------HhhhhhcccccCCCceeecCC-CCCCCCeEEEEeeEEEEECC---eeeeccce
Confidence 00000 000000000000000 00011235999999999963 36999999
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCC-Cc-hhhHHHHHhcCC
Q 000777 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV-LF-NDTIRANIAYGK 1143 (1288)
Q Consensus 1066 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~-Lf-~gTIreNl~~g~ 1143 (1288)
|+|++||++||+||||||||||+++|.|+.+|++|+|.+++ ++ +|+|+||++. ++ +.|++||+.++.
T Consensus 343 l~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~ 411 (552)
T TIGR03719 343 FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGL 411 (552)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhc
Confidence 99999999999999999999999999999999999999964 21 6999999973 55 469999998752
Q ss_pred CC-CC--CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHH
Q 000777 1144 GG-DA--TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220 (1288)
Q Consensus 1144 ~~-~~--sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~ 1220 (1288)
.. .. .+.+..++++..++.+. ........||||||||++|||||+.+|++|||||||++||+.+...
T Consensus 412 ~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 481 (552)
T TIGR03719 412 DIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481 (552)
T ss_pred cccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 10 11 12233444444444211 1234456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeC-CEEEE-ecChhhhhcC
Q 000777 1221 VQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKN-GVIVE-KGKHENLINI 1270 (1288)
Q Consensus 1221 I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-G~Ive-~Gt~~eLl~~ 1270 (1288)
+.+.|++. +.|+|+|||+++.+.. ||+|++|++ |++++ .|+++++.+.
T Consensus 482 l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 482 LEEALLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred HHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 99999987 3599999999999876 999999997 68774 5788777643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=625.80 Aligned_cols=509 Identities=19% Similarity=0.181 Sum_probs=386.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 62 IIGSIGAIGNGLCLPL-MTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1288)
Q Consensus 62 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1288)
++++++.++..++... .|++.+.++|.... . ...+.. ++++.++..++.+++.++..+.+.++..++|.
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 85 (547)
T PRK10522 16 ISVMALSLASAALGIGLIAFINQRLIETADT--S----LLVLPE----FLGLLLLLMAVTLGSQLALTTLGHHFVYRLRS 85 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc--c----chHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444 35666777775321 1 011111 12222333456678888888899999999999
Q ss_pred HHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000777 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1288)
Q Consensus 141 ~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~ 220 (1288)
+++++++++|+++|+++ ++|++++|+++|++.+...+. .+..++..++.+++.++++++++|.+++++++.+|+.+++
T Consensus 86 ~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i 163 (547)
T PRK10522 86 EFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWG 163 (547)
T ss_pred HHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 999999999999999998765 4677788888888889999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE---KQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297 (1288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1288)
..++.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..........+..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (547)
T PRK10522 164 GFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIM 242 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888899999999999999999996 4433 35567777776666655555444333332222222
Q ss_pred HHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCccc
Q 000777 298 VFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKIL 377 (1288)
Q Consensus 298 ~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~ 377 (1288)
..+..++++++++... ..+.+.+..+..+.+....|+..+...+..++.+..+.+|+.++++.+++.+... ....
T Consensus 243 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~--~~~~ 317 (547)
T PRK10522 243 MLGAIGLVFYMANSLG---WADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPR--PQAF 317 (547)
T ss_pred HHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc--cccc
Confidence 2222233333443221 1223333333333344557888899999999999999999999875433211111 1111
Q ss_pred CCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH
Q 000777 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1288)
Q Consensus 378 ~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 457 (1288)
+ ..+.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.+||+|+++++.++
T Consensus 318 ~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 318 P-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED 394 (547)
T ss_pred C-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHH
Confidence 1 1357999999999973 346999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
+|++|+||+|+|++|++|+++| + ++.++++++++++..++.+++. .|+|. .+|.+||||||||++||||+
T Consensus 395 ~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 395 YRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred HhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999 2 3455666666666555544432 22221 13789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEeEe
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 601 (1288)
+++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||+|++|++|++++.
T Consensus 465 ~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999987654 47899999999999999999999999999876
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-66 Score=644.35 Aligned_cols=200 Identities=26% Similarity=0.382 Sum_probs=167.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 36999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--CCc-hhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1122 GLVSQEP--VLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1122 ~~V~Qd~--~Lf-~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
+|++|++ .+. ..|+.+++... .+...++++.+.++..++.+. .+......||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999985 343 34888887421 112345566666666665321 122344579999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhhhh
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIV-EKGKHENLI 1268 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv-e~Gt~~eLl 1268 (1288)
.+|+||||||||++||+.+...+.+.|++. +.|||+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999986 4599999999999976 9999999999998 679998874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=659.85 Aligned_cols=214 Identities=25% Similarity=0.410 Sum_probs=179.0
Q ss_pred cEEEEEEEEECCCC----------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC--CCceEEECCeec
Q 000777 1042 EIELHHVSFKYPSR----------PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEI 1109 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~----------~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di 1109 (1288)
.++|+||++.++.. ...++|+|||++|+|||.+||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999998532 123699999999999999999999999999999999999763 689999999886
Q ss_pred cCCCHHHHhcceEEEccCCCCch-hhHHHHHhcCC----CCCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCC
Q 000777 1110 QKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYGK----GGDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERG 1180 (1288)
Q Consensus 1110 ~~i~~~~lR~~i~~V~Qd~~Lf~-gTIreNl~~g~----~~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G 1180 (1288)
.+ ..+|+.++||+|++.++. .|++|||.+.. +...+.+ .+.++++..++.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 42 457788999999987765 69999998641 1123333 35667777776543 367777554
Q ss_pred -CCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchh-h-hhcCEEEEEeC-
Q 000777 1181 -LQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLST-I-KNADMIAVVKN- 1255 (1288)
Q Consensus 1181 -~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~- 1255 (1288)
..||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999875 47899999999984 4 56999999996
Q ss_pred CEEEEecChh
Q 000777 1256 GVIVEKGKHE 1265 (1288)
Q Consensus 1256 G~Ive~Gt~~ 1265 (1288)
|+++.+|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=629.03 Aligned_cols=202 Identities=25% Similarity=0.398 Sum_probs=165.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 36999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEccCC-CCch-hhHHHHHhcCCCC-CCC--HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1122 GLVSQEP-VLFN-DTIRANIAYGKGG-DAT--EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1122 ~~V~Qd~-~Lf~-gTIreNl~~g~~~-~~s--d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
+|++|++ .++. .|+.||+.++... ... +.++.+.++..++.+ + ........||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------K----RAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------H----HHhChhhhCCHHHHHHHHHHHH
Confidence 9999986 3554 5999999864211 111 334444554444321 1 1223345799999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEe-CCEEEEe-cChhhhhc
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVK-NGVIVEK-GKHENLIN 1269 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-~G~Ive~-Gt~~eLl~ 1269 (1288)
|+.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||+|++|+ +|+|.++ |++++-+.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999886 5699999999999965 99999998 8999875 78877643
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-64 Score=629.37 Aligned_cols=201 Identities=28% Similarity=0.381 Sum_probs=166.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||+++|++ .+++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999963 23699999999999999999999999999999999999999999999975 3479
Q ss_pred EEEccCCCCchhhHHHHHh--cC-CCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1122 GLVSQEPVLFNDTIRANIA--YG-KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~gTIreNl~--~g-~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
+|+||++. ...++.+|.. +. ..+..+++++.++++..++.+.. .......||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence 99999973 2234555532 10 01234577888888888775321 12345689999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhhhh
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIV-EKGKHENLI 1268 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv-e~Gt~~eLl 1268 (1288)
.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999875 3599999999999976 9999999999998 568877653
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-62 Score=612.11 Aligned_cols=530 Identities=14% Similarity=0.119 Sum_probs=434.6
Q ss_pred HHHHHHhhchhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 000777 46 FYKLFTFADSADT----ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1288)
Q Consensus 46 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 121 (1288)
++++++|+.|++. ..+++.+++.++..++....|++.+.++|..... +.......+..++++++++.++..+..|
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~-~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR-SPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788876654 2456667777778888889999999999986532 1111111122334445555666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1288)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 201 (1288)
+..++......++..++|..++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++.++.++.
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888999999999999988889999984 6899999999999999999999999999999998888877775
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 000777 202 -KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280 (1288)
Q Consensus 202 -~~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~ 280 (1288)
++|.+++++++.+|+.+++..++.+.+.+...+.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-h----cCcCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q 000777 281 VQEGLAAGIGLGMVMLIVFC--SYALSVWYGGKLIL-E----EGYNGGQVVN-VMVA---VLTGSMSLGEASPCLSAFGA 349 (1288)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----~~~~~g~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~ 349 (1288)
.+...+.+....+..++... ..++.++.|...+. . |.+|.|.+++ ++.+ +.....|+..+...+..+++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777766655432 22223333443332 2 6788887766 3332 44557789999999999999
Q ss_pred HHHHHHHHHHHhccCCCCccC-------CC--CC-------------cccCCCcccEEEEeEEEECCCCCCCcccccceE
Q 000777 350 GQAAAFKMFETINRKPEIDAY-------DT--KG-------------KILDDIRGDIELRDVYFSYPARPNEQIFSGFSI 407 (1288)
Q Consensus 350 ~~~a~~ri~~~l~~~~~~~~~-------~~--~~-------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l 407 (1288)
+.++++|++++++.+++.+.. .. .. .......+.|+++||+|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 999999999999754432100 00 00 001112356999999999963 3469999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCC---
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--- 484 (1288)
Q Consensus 408 ~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~--- 484 (1288)
+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999875 56899999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHH
Q 000777 485 ----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1288)
Q Consensus 485 ----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~ 560 (1288)
+..++++++++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 33567788999999999998887 899999876 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC
Q 000777 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1288)
Q Consensus 561 i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 595 (1288)
+.+.+++. ++|+|+||||++.++.||+|++|++
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 7899999999999988999999974
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=578.32 Aligned_cols=461 Identities=27% Similarity=0.422 Sum_probs=357.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH-HHhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 461 (1288)
-++++|++++|+ +.++|+|+||++.+||++||+|+||||||||+|+|+|.|+|++|+|.+||+++...++. .....
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 488999999996 46799999999999999999999999999999999999999999999999999876654 56789
Q ss_pred eEEEcCCCCCC-chhHHHHHhcCCCCCC------HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 462 IGLVSQEPVLF-TGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
|+.|+||..|+ +.||.|||.+|.+... ..++.+.+ .+.++.+ |++........+||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 99999999998 5699999999976433 23332222 2344555 332225556678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecCh-hHHhcCC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH-SKLVEDP 611 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~-~~l~~~~ 611 (1288)
||+..+++|+|||||||+|+....+.+++.+++++ +|.++|+||||++++.. ||||.||+||+.+..++. .++-.+
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~- 236 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSED- 236 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHH-
Confidence 99999999999999999999999999999999987 47899999999999976 999999999999865431 111000
Q ss_pred CchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCC
Q 000777 612 EGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEP 691 (1288)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1288)
++++.
T Consensus 237 -----~lv~~---------------------------------------------------------------------- 241 (500)
T COG1129 237 -----ELVRL---------------------------------------------------------------------- 241 (500)
T ss_pred -----HHHHH----------------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHH
Q 000777 692 AGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALG 771 (1288)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 771 (1288)
.
T Consensus 242 ---------------------------------------------------------M---------------------- 242 (500)
T COG1129 242 ---------------------------------------------------------M---------------------- 242 (500)
T ss_pred ---------------------------------------------------------h----------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000777 772 AGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTA 851 (1288)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~ 851 (1288)
.|+
T Consensus 243 -----------------------------------------------vGr------------------------------ 245 (500)
T COG1129 243 -----------------------------------------------VGR------------------------------ 245 (500)
T ss_pred -----------------------------------------------hCc------------------------------
Confidence 000
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH
Q 000777 852 AAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931 (1288)
Q Consensus 852 ~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~ 931 (1288)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 932 CEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKS 1011 (1288)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1288)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHH
Q 000777 1012 AAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091 (1288)
Q Consensus 1012 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL 1091 (1288)
++-+..+. .... ......++++|++.. ..++|+||++++||.+||.|-=|||+|-++++|
T Consensus 246 ------~~~~~~~~-~~~~------~~~~~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~l 305 (500)
T COG1129 246 ------ELEDLFPE-PPEE------GIGEPVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARAL 305 (500)
T ss_pred ------chhhhccc-cccc------CCCCcEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHH
Confidence 00000000 0000 001123678887742 158999999999999999999999999999999
Q ss_pred hccCCCCCceEEECCeeccCCC-HHHHhcceEEEccCC----CCchhhHHHHHhcCCCCCCCHH-HHHHHHHHhchhHHH
Q 000777 1092 QRFYDPDAGHITLDGVEIQKLQ-LKWLRQQMGLVSQEP----VLFNDTIRANIAYGKGGDATEA-EIQAASEMANAHKFI 1165 (1288)
Q Consensus 1092 ~rl~~p~~G~I~idG~di~~i~-~~~lR~~i~~V~Qd~----~Lf~gTIreNl~~g~~~~~sd~-ei~~al~~a~l~~~i 1165 (1288)
+|..++.+|+|.+||.++.--+ .+..+..|+|||-|- .+...+|++|+.+......+.. -+....+..-..+++
T Consensus 306 fG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~ 385 (500)
T COG1129 306 FGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYI 385 (500)
T ss_pred hCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHH
Confidence 9999999999999999887665 557899999999986 3557899999976411111111 244445555566777
Q ss_pred HhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhh
Q 000777 1166 CSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTI 1244 (1288)
Q Consensus 1166 ~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti 1244 (1288)
.+|.-.-.. ....-.+||||.+|+++|||+|..+|+||||||||.++|.-+.++|.+.|+++. +|.+||+||-.+..+
T Consensus 386 ~~l~Ik~~s-~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEl 464 (500)
T COG1129 386 RRLRIKTPS-PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPEL 464 (500)
T ss_pred HhcCcccCC-ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 766432211 123345899999999999999999999999999999999999999999999986 679999999999998
Q ss_pred h-hcCEEEEEeCCEEEEecChhh
Q 000777 1245 K-NADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1245 ~-~~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
. .||||+||.+|+|+..=+.++
T Consensus 465 l~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 465 LGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HhhCCEEEEEECCEEEEEecccc
Confidence 6 599999999999997544433
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=605.51 Aligned_cols=528 Identities=14% Similarity=0.121 Sum_probs=431.5
Q ss_pred hHhhhhhcCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhchHHHHHHHHHHHHHHHHHHHH
Q 000777 707 TRRLAYLNKPEIP-----VILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSRFWALIYLALGAGSFLLSPA 780 (1288)
Q Consensus 707 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 780 (1288)
+++++.+.+|+++ .++..+++.++...+....+++...+++....... ........|.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666664 45566666666677777778888888887653211 01111222334444555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT 860 (1288)
Q Consensus 781 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 860 (1288)
..++......++..++|++.+++....++.|||. +.|++.+|+++|++.+...+...+..++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888999999999999988999999983 6799999999999999999999999999999999988887776
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 000777 861 -ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939 (1288)
Q Consensus 861 -~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~ 939 (1288)
.+|.+++++++.+|+..++.++..+...+...+.++..++....+.|.+.|+++|++|+.++.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHH-hc----CCcCHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Q 000777 940 IRQGMVSGGGFGASFFLLFA--FYAASFYAGARLV-ED----GKATFSDVFKV-FFS---LTMTAIGISQSSSFSSDSNK 1008 (1288)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv-~~----g~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 1008 (1288)
.+...+......+..++... .....++.|...+ .. |.+|+|.+++. ..+ +..+..|+..+.....++++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887777777666542 2222333334233 22 78898887663 332 45567889999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCC--------CC-CCC-------------ccccCCCccEEEEEEEEECCCCCCcccccceeE
Q 000777 1009 AKSAAASIFAIIDRESKIDP--------SD-ESG-------------TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNL 1066 (1288)
Q Consensus 1009 ~~~~~~ri~~~~~~~~~~~~--------~~-~~~-------------~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl 1066 (1288)
+..+.+|++++++.+++.+. ++ +.. .......+.|+++||+|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 99999999999875432110 00 000 001113356999999999974 2369999999
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCC--
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-- 1144 (1288)
Q Consensus 1067 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-- 1144 (1288)
+|++||++||+||||||||||+++|+|+++|++|+|.+|+ |++++||||+|.+|++|++||+.++..
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 678999999999999999999998631
Q ss_pred ----CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHH
Q 000777 1145 ----GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220 (1288)
Q Consensus 1145 ----~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~ 1220 (1288)
.+.++++++++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 23578899999999999999987 999999876 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecCchhhhhcCEEEEEe
Q 000777 1221 VQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVK 1254 (1288)
Q Consensus 1221 I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~ 1254 (1288)
+.+.+++. ++|+|+||||+++++.||+|++|+
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence 99999874 899999999999999999999997
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=585.40 Aligned_cols=485 Identities=28% Similarity=0.375 Sum_probs=347.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|+ ++++|+|+||++.+|+++||||+||||||||+++|+|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 488999999995 467999999999999999999999999999999999999999999998761 269
Q ss_pred EEEcCCCCCCch-hHHHHHhcCCCCCCH--HHHHHHHH-------------------------HcCHHHHHHhCCCCccc
Q 000777 463 GLVSQEPVLFTG-SIKDNIAYGKDDATT--EEIRVATE-------------------------LANAAKFIDKLPQGIDT 514 (1288)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~-------------------------~~~~~~~i~~l~~g~~t 514 (1288)
+|++|++.+... ||.+.+..+...... .+.+.+.. .+.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999865 999999877542211 11111110 02223344444 4444
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEE
Q 000777 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVI 593 (1288)
Q Consensus 515 ~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l 593 (1288)
. .....+||||||.|++|||||+.+||+|||||||++||.++..++.+.|.+.. + |+|+||||.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEe
Confidence 4 55667999999999999999999999999999999999999999999998763 4 99999999999987 9999999
Q ss_pred eCCEEe-EecChhHHhcCCCchHHHHHHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCccc
Q 000777 594 HRGKIV-EKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSI 672 (1288)
Q Consensus 594 ~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1288)
+.|++. +.|+++..++. .......+....... . +
T Consensus 224 d~g~l~~y~Gny~~~~~~-----------r~~~~~~~~~~~~~~--~---~----------------------------- 258 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQ-----------KAERLRQEAAAYEKQ--Q---K----------------------------- 258 (530)
T ss_pred cCCceeEecCCHHHHHHH-----------HHHHHHHHHHHHHHH--H---H-----------------------------
Confidence 999875 45555544432 111000000000000 0 0
Q ss_pred ccccCCCCCCcccccCCCCCCCCCCCcccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000777 673 SVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKP 752 (1288)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1288)
..+.... ++
T Consensus 259 ---------------------------------~~~~~~~--------------------------------~i------ 267 (530)
T COG0488 259 ---------------------------------ELAKEQE--------------------------------WI------ 267 (530)
T ss_pred ---------------------------------HHHHHHH--------------------------------HH------
Confidence 0000000 00
Q ss_pred CccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHH
Q 000777 753 PHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAAS 832 (1288)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~ 832 (1288)
.|+
T Consensus 268 -----------------------------------------------------------------------~r~------ 270 (530)
T COG0488 268 -----------------------------------------------------------------------RRG------ 270 (530)
T ss_pred -----------------------------------------------------------------------HHH------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000777 833 VRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSI 912 (1288)
Q Consensus 833 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~ 912 (1288)
T Consensus 271 -------------------------------------------------------------------------------- 270 (530)
T COG0488 271 -------------------------------------------------------------------------------- 270 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Q 000777 913 RTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMT 992 (1288)
Q Consensus 913 ~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~ 992 (1288)
.....+..++
T Consensus 271 ----------------~~~~~~~k~a------------------------------------------------------ 280 (530)
T COG0488 271 ----------------KAAASKAKKA------------------------------------------------------ 280 (530)
T ss_pred ----------------HhccchHHHH------------------------------------------------------
Confidence 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCC-CCCC--CCCCccccCCCccEEEEEEEEECCCCCCcccccceeEE
Q 000777 993 AIGISQSSSFSSDSNKAKSAAASIFAI--IDRESK-IDPS--DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLK 1067 (1288)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~ri~~~--~~~~~~-~~~~--~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~ 1067 (1288)
+......+++.+- ...+.. ..+. ..+.......+.-++++|+++.|++. +++++|+||.
T Consensus 281 --------------~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~ 344 (530)
T COG0488 281 --------------KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFR 344 (530)
T ss_pred --------------HHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEE
Confidence 0000000000000 000000 0000 00000001123359999999999643 5799999999
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCC-CCc-hhhHHHHHhcCCCC
Q 000777 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLF-NDTIRANIAYGKGG 1145 (1288)
Q Consensus 1068 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~-~Lf-~gTIreNl~~g~~~ 1145 (1288)
|.+|++||||||||+|||||+++|.|-..|.+|+|.+.-. + ++||.+|+. .++ +.|+-|++.-.. +
T Consensus 345 i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~igyf~Q~~~~l~~~~t~~d~l~~~~-~ 412 (530)
T COG0488 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------KIGYFDQHRDELDPDKTVLEELSEGF-P 412 (530)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------EEEEEEehhhhcCccCcHHHHHHhhC-c
Confidence 9999999999999999999999999999999999998631 2 589999998 444 458999997542 2
Q ss_pred CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHH
Q 000777 1146 DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDAL 1225 (1288)
Q Consensus 1146 ~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L 1225 (1288)
+..+.+++..|...++..-- ..++ ...||||||-|+.||+.++.+|.+|||||||++||.+|...+.++|
T Consensus 413 ~~~e~~~r~~L~~f~F~~~~------~~~~----v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL 482 (530)
T COG0488 413 DGDEQEVRAYLGRFGFTGED------QEKP----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL 482 (530)
T ss_pred cccHHHHHHHHHHcCCChHH------HhCc----hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 33478899888887765331 2333 4579999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEe-cChhhhhcC
Q 000777 1226 DRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK-GKHENLINI 1270 (1288)
Q Consensus 1226 ~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~-Gt~~eLl~~ 1270 (1288)
.++ ..|||+|||+.+.+.. |++|+++++ ++.++ |++++..+.
T Consensus 483 ~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 483 LDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred HhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 987 6799999999999987 999999999 88887 888887764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=612.71 Aligned_cols=193 Identities=24% Similarity=0.353 Sum_probs=163.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+.+|++|+|.++ + ++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 4899999999953 25999999999999999999999999999999999999999999986 1 59
Q ss_pred EEEccCCCC-chhhHHHHHhcCCCCCC-CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcC
Q 000777 1122 GLVSQEPVL-FNDTIRANIAYGKGGDA-TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199 (1288)
Q Consensus 1122 ~~V~Qd~~L-f~gTIreNl~~g~~~~~-sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr 1199 (1288)
+|+||++.+ ++.|++||+.++.. .. .+..+.++++..++.+. .......||||||||++|||||++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~L~~l~l~~~-----------~~~~~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITD-DLGSSYYKSEIIKPLQLERL-----------LDKNVKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhh-hcChHHHHHHHHHHCCCHHH-----------HhCCcccCCHHHHHHHHHHHHHhc
Confidence 999999864 56799999986421 22 23345666666666543 234456799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 000777 1200 DPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1200 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~ 1264 (1288)
+|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++ ++...|+.
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 9999999999999999999999999998753 7899999999999865 999999964 88777763
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=541.90 Aligned_cols=463 Identities=25% Similarity=0.437 Sum_probs=361.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC-HHHHhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~ 461 (1288)
.++++|++++|| +..+++||||+|++||+.||+|+||+|||||+++|.|+|+|++|+|++||++++--+ .+++|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999997 467999999999999999999999999999999999999999999999999998654 5678899
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
||+|+|++.|+. .||.|||.+|.+......+........+.+..+++ |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 999999999995 59999999998743111111111222233445555 777777788889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchHHHH
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1288)
|++||||||||-|-|...+.+++.++.+.+ |+|+|+|||++.++.. |||+-||++|+++..-++ ..+. .-.++
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~~~~---t~~el 233 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--VAET---TEEEL 233 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--CCCC---CHHHH
Confidence 999999999999999999999999999864 7999999999999987 999999999998643211 0000 00000
Q ss_pred HHHHhhcccccccccccccchhhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCcccccCCCCCCCCCCC
Q 000777 619 IRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPT 698 (1288)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1288)
.+
T Consensus 234 a~------------------------------------------------------------------------------ 235 (501)
T COG3845 234 AE------------------------------------------------------------------------------ 235 (501)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred cccCCchhhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhchHHHHHHHHHHHHHHHHHH
Q 000777 699 EEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLS 778 (1288)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 778 (1288)
+ .+.
T Consensus 236 -----------l--------------------------------------MvG--------------------------- 239 (501)
T COG3845 236 -----------L--------------------------------------MVG--------------------------- 239 (501)
T ss_pred -----------H--------------------------------------hcC---------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 779 PAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA 858 (1288)
Q Consensus 779 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 858 (1288)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 000777 859 FTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938 (1288)
Q Consensus 859 ~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~ 938 (1288)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 939 GIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFA 1018 (1288)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 1018 (1288)
..+
T Consensus 240 ------------------------------------~~v----------------------------------------- 242 (501)
T COG3845 240 ------------------------------------REV----------------------------------------- 242 (501)
T ss_pred ------------------------------------Ccc-----------------------------------------
Confidence 000
Q ss_pred HhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Q 000777 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098 (1288)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1098 (1288)
..+.. ..+..+ ...-++++|++..-+ + +.+.++||||++++||.+||.|-.|.|-+.|+.+|.|+.+|.
T Consensus 243 --~~~~~-~~~~~p------g~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~ 311 (501)
T COG3845 243 --VLRVV-KPPSTP------GEVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA 311 (501)
T ss_pred --ccccc-cCCCCC------CCeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC
Confidence 00000 000001 122489999998643 2 346899999999999999999999999999999999999999
Q ss_pred CceEEECCeec-cCCCHHHHhc-ceEEEccCCC----CchhhHHHHHhcCCCCC--------CCHHHHHHHHHHhchhHH
Q 000777 1099 AGHITLDGVEI-QKLQLKWLRQ-QMGLVSQEPV----LFNDTIRANIAYGKGGD--------ATEAEIQAASEMANAHKF 1164 (1288)
Q Consensus 1099 ~G~I~idG~di-~~i~~~~lR~-~i~~V~Qd~~----Lf~gTIreNl~~g~~~~--------~sd~ei~~al~~a~l~~~ 1164 (1288)
+|+|+++|.|+ ...+...+|+ .++|||.|.+ ..+-|+.||+.++.... .+..++...+ .+.
T Consensus 312 ~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~l 386 (501)
T COG3845 312 SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----REL 386 (501)
T ss_pred CceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHH
Confidence 99999999997 6667766654 6999999984 56789999998653211 1223333322 233
Q ss_pred HHhh---hccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q 000777 1165 ICSL---QQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHR 1240 (1288)
Q Consensus 1165 i~~l---p~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHr 1240 (1288)
++++ +.+.++ ...+||||+.||+-+||-|.++|++||..+||.+||..+.+.|.+.|.+.. +|+.|++|+-+
T Consensus 387 i~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d 462 (501)
T COG3845 387 IEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462 (501)
T ss_pred HHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh
Confidence 3332 122233 345899999999999999999999999999999999999999999998875 67899999999
Q ss_pred chhhhh-cCEEEEEeCCEEEEecChhh
Q 000777 1241 LSTIKN-ADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1241 l~ti~~-~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
|+.+.. ||||.||.+|+|+....+++
T Consensus 463 LDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 463 LDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHHHHHhhheeeeeeCCceeccccccc
Confidence 999865 99999999999998887765
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=475.56 Aligned_cols=238 Identities=26% Similarity=0.465 Sum_probs=224.3
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcc
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1120 (1288)
|.|+|+||+++|+.. ++++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999743 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
|+||||+|.+|++|+++|+.+. ...++++++++++.+++.+++.++|.+|++.++++|.+||||||||+|||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~--~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPY--GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhc--cCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999743 23678899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHH
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIA 1280 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1280 (1288)
|+||||||||++||+.+++.+++.|++.++++|+|+||||++++..||||++|++|+|+|.|+|++|+++ .+.|++++.
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~ 235 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAIS 235 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHh
Confidence 9999999999999999999999999998889999999999999999999999999999999999999996 689999987
Q ss_pred Hhh
Q 000777 1281 LHS 1283 (1288)
Q Consensus 1281 ~~~ 1283 (1288)
...
T Consensus 236 ~~~ 238 (275)
T cd03289 236 PSD 238 (275)
T ss_pred hcc
Confidence 653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=422.72 Aligned_cols=221 Identities=32% Similarity=0.578 Sum_probs=190.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC-CCHHHHhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE-FQLQWIRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~ 461 (1288)
-|+++|++++|+ +..||+|||++|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999996 4579999999999999999999999999999999999999999999999987743 377889999
Q ss_pred eEEEcCCCCCC-chhHHHHHhcCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 462 IGLVSQEPVLF-TGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
+|+|||+..|| +.||.||+.++.-. .+.++.++. +.+.+++. |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~-----A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 99999999999 56999999987321 222222111 12334444 555555666689999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCc
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1288)
+.+|+++++|||||||||+...++.+.++++.+ +.|.|+|||.+.+++. ||||++||+|+|+++|+++++..+|..
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 999999999999999999999999999999975 5799999999999988 999999999999999999999988654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-51 Score=412.02 Aligned_cols=218 Identities=34% Similarity=0.518 Sum_probs=191.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeecc-CCCHHHHhcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~lR~~i 1121 (1288)
|+++||+.+|.+ ..||+|||++|++||+++|+||||||||||+++|.||-+|++|+|.+||.++. +.+...+|+++
T Consensus 3 i~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 899999999963 46999999999999999999999999999999999999999999999998773 33789999999
Q ss_pred EEEccCCCCch-hhHHHHHhcCCC--CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKG--GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
|+|+|+..||+ -|+.||+.+++. ...+.+ .-.+.|+++|+.|-... .+.+|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-----------yP~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-----------YPAQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-----------CccccCcHHHHHHHHH
Confidence 99999999994 799999998741 112322 33455667777665444 3568999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
|||..+|+++++|||||||||+.-.++.+.++++. .|.|.|+|||.+...++ ||||+.||+|+|+|.|+|+++..+|+
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999999987 56799999999999987 99999999999999999999999876
Q ss_pred cH
Q 000777 1273 GF 1274 (1288)
Q Consensus 1273 g~ 1274 (1288)
..
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 43
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=444.10 Aligned_cols=198 Identities=29% Similarity=0.409 Sum_probs=164.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|.|+||+|+|++.+ .+++++||-|.++++||+|||||+|||||++++.|...|+.|.|.-.-.. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 499999999998543 79999999999999999999999999999999999999999998664322 23
Q ss_pred EEEcc---CCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1122 GLVSQ---EPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1122 ~~V~Q---d~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
++..| |..-++.|.-|++..-..+.-..++++..+...|+....... ++ ++||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~------p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV------PM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc------ch----hhcccccchhHHHHHHHh
Confidence 33334 334567788888863212235677888899999887543332 22 479999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEe-cCh
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK-GKH 1264 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~-Gt~ 1264 (1288)
+.|.||||||||++||.++-..+.++|.++ ..+||+|+|+...|.+ +++|++.++|.+... |..
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999886 6799999999999987 999999999988754 443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=423.55 Aligned_cols=221 Identities=36% Similarity=0.569 Sum_probs=191.6
Q ss_pred EEEEeEEEECCCC--CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH---HH
Q 000777 384 IELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1288)
Q Consensus 384 i~~~~v~~~y~~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 458 (1288)
|+++||++.|+.. +...+|+||||+|++||+.||+|+||+|||||++++.++..|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 235689999999999999999999999999999999999999999999999999877754 56
Q ss_pred hcceEEEcCCCCCCc-hhHHHHHhcCCCCC--CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000777 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 531 (1288)
|++||++||++.|++ .||++|++|+.+-. +. +++.+.++.+ |+....+..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----------gL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----------GLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhccCchhcCcchhhHH
Confidence 789999999999986 79999999985432 22 2333444444 444445566689999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 532 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
+|||||..+|+||+.|||||||||+|.+.|.+.|+++.+ +-|+++|||.++.++. |||+.||++|+++|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999988764 6799999999999988 9999999999999999999999
Q ss_pred cCCCchH
Q 000777 609 EDPEGAY 615 (1288)
Q Consensus 609 ~~~~~~~ 615 (1288)
.+|...-
T Consensus 231 ~~Pk~~~ 237 (339)
T COG1135 231 ANPKHAI 237 (339)
T ss_pred cCcchHH
Confidence 8875433
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=419.90 Aligned_cols=222 Identities=35% Similarity=0.539 Sum_probs=192.4
Q ss_pred EEEEEEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC---HHHH
Q 000777 1043 IELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~l 1117 (1288)
|+|+|||+.|+.. ...++|+||||+|++||+.||+|+||||||||++++.|+-.|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999852 1246999999999999999999999999999999999999999999999999887665 6778
Q ss_pred hcceEEEccCCCCch-hhHHHHHhcCCC-CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1118 RQQMGLVSQEPVLFN-DTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1118 R~~i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
|++||+|+|++.|++ .|+.+|++|... ...+.+ ++.+.|+.+|+.|. .+..+.+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcchhhHH
Confidence 899999999999997 899999997421 123344 34455666666554 3445679999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
+|||||..+|+||++|||||||||+|-+.|.+.|++.- -+-|+++|||.++.+++ |||+.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998764 36799999999999987 9999999999999999999999
Q ss_pred cCCCcHH
Q 000777 1269 NIPDGFY 1275 (1288)
Q Consensus 1269 ~~~~g~y 1275 (1288)
.+|+..-
T Consensus 231 ~~Pk~~~ 237 (339)
T COG1135 231 ANPKHAI 237 (339)
T ss_pred cCcchHH
Confidence 9876543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=407.67 Aligned_cols=219 Identities=35% Similarity=0.566 Sum_probs=192.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+|+|||++|. ++.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++...+|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-chhHHHHHhcCCC--CCCHHH----HHHHHHHcCHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHH
Q 000777 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDT--LVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqkqri~lA 534 (1288)
||-|..-|| +.||.|||++-.. ..+.++ +.+.+++. |++- ...+.+.+|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lv-----------gL~p~~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV-----------GLDPSEYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHh-----------CCCHHHHhhcCchhcCcchhhHHHHH
Confidence 999999999 5699999997532 123332 33333333 3332 34555679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1288)
|||..+|+|+++|||++||||.++..+|+.+.++.+ ++|+|+||||+++.-+ +|||.+|++|+|+..++|++++.+|
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988865 6899999999999765 9999999999999999999999987
Q ss_pred CchHH
Q 000777 612 EGAYS 616 (1288)
Q Consensus 612 ~~~~~ 616 (1288)
...|-
T Consensus 228 an~FV 232 (309)
T COG1125 228 ANDFV 232 (309)
T ss_pred cHHHH
Confidence 65554
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=449.28 Aligned_cols=228 Identities=31% Similarity=0.498 Sum_probs=201.3
Q ss_pred CCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeecc--
Q 000777 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQ-- 1110 (1288)
Q Consensus 1038 ~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~-- 1110 (1288)
+..+.|+|+||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 345689999999999743 3479999999999999999999999999999999999997 57999999999997
Q ss_pred CCCHHHHhcceEEEccCCCCchhhHHHHHhcCCC-CCCCHHHH-----HHHHHHhchhHHHHhhhccccccccCCCCCCC
Q 000777 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDATEAEI-----QAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1111 ~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~~sd~ei-----~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1184 (1288)
.+++..+|++++||||+|.+|++|++|||.+++. ...++++. +++++.++++ +++++.++++|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCC
Confidence 4566789999999999999999999999997632 12444443 4455666553 445678899999999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 000777 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263 (1288)
Q Consensus 1185 gGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt 1263 (1288)
||||||+|||||++++|+|||||||||+||+++...+++.|++..+++|+|+|||+++++.. ||||+||++|+|+|.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999889999999999999987 99999999999999999
Q ss_pred hhhhhcCCCc
Q 000777 1264 HENLINIPDG 1273 (1288)
Q Consensus 1264 ~~eLl~~~~g 1273 (1288)
++++..++..
T Consensus 308 ~~~l~~~~~~ 317 (329)
T PRK14257 308 TKTIFIHPKN 317 (329)
T ss_pred HHHHhcCCCc
Confidence 9999987553
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=434.29 Aligned_cols=236 Identities=28% Similarity=0.506 Sum_probs=218.8
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
|.|+++|++++|+. +++++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~-~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTE-GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 46899999999963 24579999999999999999999999999999999999997 78999999999999999999999
Q ss_pred eEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
|+||||+|++|++|+++|+....+ .++++++++++.+++.+++..+|+|+++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999974322 4678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHHHH
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1288)
+||||||||++||+.+++.+++.|++..+++|+|+||||++++..||||++|++|++++.|++++++++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999999999986 5777777643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=396.61 Aligned_cols=221 Identities=33% Similarity=0.513 Sum_probs=201.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-----ceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--i~~ 1114 (1288)
.++++||++-|. +..+|+|||++|++++.+|++|||||||||++++|.|+.+..+ |+|.+||.||-+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 3469999999999999999999999999999999999999886 999999999965 689
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCCC-----CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-----~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
..+|++||+|+|.|.-|+.||+||++||..- ..-|+-++++|+.|.|||-+.. . +.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---r----L~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---R----LHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---H----hhCCccCCChhHHH
Confidence 9999999999999999999999999998421 1235568899999999998753 3 45667889999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
||||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||.+.-..+ +|+...+..|+++|+|+-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999989999999999998765 9999999999999999999999
Q ss_pred cCCC
Q 000777 1269 NIPD 1272 (1288)
Q Consensus 1269 ~~~~ 1272 (1288)
.+|.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=392.61 Aligned_cols=221 Identities=34% Similarity=0.526 Sum_probs=199.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC-----cEEEECCeeCCC--CC
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGINLKE--FQ 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~-----G~i~~~g~~~~~--~~ 454 (1288)
..++++|+++.|+ ++.+|+|||++|++++++|++||||||||||++++.|+.+... |+|.++|+||.+ .+
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999996 4579999999999999999999999999999999999998765 999999999975 57
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCCC------CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
...+|++||+|||.|.-|+.||+||++||..-. -++.++++++.+.+.+.++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 889999999999999999999999999984321 12457788888888776543 25577889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||+||||||.-+|+|||||||||||||.+...|.+.|.+++++-|+|+|||.+....+ +|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999988999999999999876 999999999999999999999
Q ss_pred hcCCC
Q 000777 608 VEDPE 612 (1288)
Q Consensus 608 ~~~~~ 612 (1288)
..+|.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 98754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=396.37 Aligned_cols=221 Identities=33% Similarity=0.519 Sum_probs=194.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCc-hhhHHHHHhcCCC-CCCCHH----HHHHHHHHhchhH--HHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1123 LVSQEPVLF-NDTIRANIAYGKG-GDATEA----EIQAASEMANAHK--FICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1123 ~V~Qd~~Lf-~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~--~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
||-|..-|| +-||.|||++-+. ...+.+ ++.+.++++++.. |.. ..+..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~-----------RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYAD-----------RYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhh-----------cCchhcCcchhhHHHHH
Confidence 999999999 5799999986421 123444 4555666666642 333 34568999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhh-hhcCEEEEEeCCEEEEecChhhhhcCC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~Gt~~eLl~~~ 1271 (1288)
|||..+|+||+||||.+||||-+...+|+-+.+..+ ++|+|+|||+++.. +-+|||.||++|+|+++|+|++++++|
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999887653 68999999999886 569999999999999999999999997
Q ss_pred CcHHHH
Q 000777 1272 DGFYAS 1277 (1288)
Q Consensus 1272 ~g~y~~ 1277 (1288)
..-|-+
T Consensus 228 an~FV~ 233 (309)
T COG1125 228 ANDFVE 233 (309)
T ss_pred cHHHHH
Confidence 766544
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=415.95 Aligned_cols=235 Identities=47% Similarity=0.810 Sum_probs=217.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 346999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCC
Q 000777 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202 (1288)
Q Consensus 1123 ~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ 1202 (1288)
|+||++.+|+.|++||+.++.. ..+.+++.++++..++.+++..+|.|+++..+..+.+||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999987532 345667888888899999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHH
Q 000777 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIA 1280 (1288)
Q Consensus 1203 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1280 (1288)
+|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|++++.
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 99999999999999999999999998778999999999999988999999999999999999999986 788888765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=418.86 Aligned_cols=241 Identities=35% Similarity=0.595 Sum_probs=223.4
Q ss_pred CCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHh
Q 000777 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1288)
Q Consensus 1039 ~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 1118 (1288)
..|.|+++||+++|+.. +.++|+|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 24699999999999999999999999999999999999999999999999999998888999
Q ss_pred cceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
++++|++|+|.+|++|++||+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999997542 23566788899999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHH
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1278 (1288)
++|++|||||||++||++++..+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++++..++.|+++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999998777899999999999998899999999999999999999998777889988
Q ss_pred HHHh
Q 000777 1279 IALH 1282 (1288)
Q Consensus 1279 ~~~~ 1282 (1288)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 7643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=427.51 Aligned_cols=227 Identities=30% Similarity=0.492 Sum_probs=197.4
Q ss_pred CCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC-
Q 000777 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE- 452 (1288)
Q Consensus 379 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~- 452 (1288)
+..+.|+++|++++|+. ..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 76 ~~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 44568999999999963 23579999999999999999999999999999999999996 579999999999974
Q ss_pred -CCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCC--CCHHHH-----HHHHHHcCHHHHHHhCCCCccccccCCCCCCC
Q 000777 453 -FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEEI-----RVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1288)
Q Consensus 453 -~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~~~~~-----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 524 (1288)
.+...+|+.++||||+|++|++|++|||.|+... .++++. ..+++.++ +++++++.+++++.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCC
Confidence 4556788999999999999999999999986421 233332 23333333 34466788999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecC
Q 000777 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 525 gGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 603 (1288)
||||||++||||++++|+||||||||++||+++.+.+++.|+++.+++|+|+|||+++++.. ||||++|++|+|++.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999987 99999999999999999
Q ss_pred hhHHhcCCCc
Q 000777 604 HSKLVEDPEG 613 (1288)
Q Consensus 604 ~~~l~~~~~~ 613 (1288)
++++..++..
T Consensus 308 ~~~l~~~~~~ 317 (329)
T PRK14257 308 TKTIFIHPKN 317 (329)
T ss_pred HHHHhcCCCc
Confidence 9999876543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=385.17 Aligned_cols=224 Identities=34% Similarity=0.536 Sum_probs=191.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH---HH
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 458 (1288)
..|++++|+++|+ ++.||+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 4699999999996 46799999999999999999999999999999999999999999999999999988764 46
Q ss_pred hcceEEEcCCCCCCch-hHHHHHhcCCCCC---CHHHHHH----HHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000777 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDA---TTEEIRV----ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~---~~~~~~~----~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
|+++|++||+-.||+. ||+||+.|...++ +++.+.+ .++.+++.... ....+.+||||++.|
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~----------~~~~PsELSGGM~KR 153 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA----------ADLYPSELSGGMRKR 153 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh----------hhhCchhhcchHHHH
Confidence 8999999999999965 9999999975433 2333322 23334433331 233457999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
+|||||+..||+++++|||||+|||.+...+.+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+..|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988865 5799999999999976 999999999999999999999
Q ss_pred hcCCCchHHHH
Q 000777 608 VEDPEGAYSQL 618 (1288)
Q Consensus 608 ~~~~~~~~~~~ 618 (1288)
.+.++...+++
T Consensus 234 ~~sd~P~v~qf 244 (263)
T COG1127 234 LASDDPWVRQF 244 (263)
T ss_pred HhCCCHHHHHH
Confidence 98755444443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=414.45 Aligned_cols=218 Identities=31% Similarity=0.566 Sum_probs=193.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++||+++|++. .+++|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.+||.+++++++.. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999631 2999999999999999999999999999999999999999999999999999998875 589
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCCCC------HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
|+|||+..||+ +||+|||.|+..... ++++.++++..++.+.+++.| .+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999995 699999999965432 356667777776666665554 699999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
||+++|++++||||+|+||++.+..+...|+++.+ +.|+|.||||..++.. +|||+||++|+|.+.|+|.|+.++|.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999988988765 4799999999999876 99999999999999999999998876
Q ss_pred chHH
Q 000777 613 GAYS 616 (1288)
Q Consensus 613 ~~~~ 616 (1288)
..|.
T Consensus 227 n~fV 230 (338)
T COG3839 227 NLFV 230 (338)
T ss_pred chhh
Confidence 5543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=409.47 Aligned_cols=211 Identities=27% Similarity=0.358 Sum_probs=170.1
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcc
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1120 (1288)
..+++.+|+|.|+.. +.+.++++++.+..-+++++||++|+||||+++++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 359999999999743 22799999999999999999999999999999999999999999888865 678
Q ss_pred eEEEccCCCCc-hhhHHH--HHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHH
Q 000777 1121 MGLVSQEPVLF-NDTIRA--NIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197 (1288)
Q Consensus 1121 i~~V~Qd~~Lf-~gTIre--Nl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARAL 1197 (1288)
|+|-.|.-+=| +-.+.. -+.-. .+..+++|+++.|...|+..-+...+ -..||||||=|+++|-..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~-~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKS-FPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHh-CCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 99999976422 222211 11100 12348999999999888765543321 246999999999999999
Q ss_pred cCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCcHHH
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276 (1288)
Q Consensus 1198 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~ 1276 (1288)
..+|.+|||||||+.||.++-..+-++|+.+ +.-||+|||+.+.+.. |+.++|.++|+|.- ++-....|+
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~-------ieg~~~~yK 568 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP-------IEGGIDKYK 568 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe-------eeccHHHHH
Confidence 9999999999999999999999999999886 5689999999999987 99999999999976 221122477
Q ss_pred HHHHHhh
Q 000777 1277 SLIALHS 1283 (1288)
Q Consensus 1277 ~L~~~~~ 1283 (1288)
++...+.
T Consensus 569 kl~~~e~ 575 (582)
T KOG0062|consen 569 KLLGAEL 575 (582)
T ss_pred HHHHHHH
Confidence 7766554
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=381.73 Aligned_cols=228 Identities=32% Similarity=0.501 Sum_probs=192.0
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCC-CHHHHhc
Q 000777 1042 EIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL-QLKWLRQ 1119 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i-~~~~lR~ 1119 (1288)
.++++|+++.|+.+. -.++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.+||.++... +....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997431 01599999999999999999999999999999999999999999999999877543 3446888
Q ss_pred ceEEEccCCCC-c--hhhHHHHHh----cCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1120 QMGLVSQEPVL-F--NDTIRANIA----YGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1120 ~i~~V~Qd~~L-f--~gTIreNl~----~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
.|.+|+|||.- + .-||++-|. .+. -+-..++++++++.+|+.+-. .......||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~-~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHG-LSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCC-ccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHH
Confidence 99999999951 1 235555553 211 123456799999999987543 33456689999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCc--eEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~--TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||.-+|++||||||||+||.-..+.|++.|.+..+++ |.|+|||+++.+.. ||||+||++|+++|.++-.++.+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999987665 99999999999987 99999999999999999999998
Q ss_pred CCCcHHHHHHH
Q 000777 1270 IPDGFYASLIA 1280 (1288)
Q Consensus 1270 ~~~g~y~~L~~ 1280 (1288)
.+...|.+..-
T Consensus 232 ~~~h~ytr~Ll 242 (252)
T COG1124 232 HPSHPYTRELL 242 (252)
T ss_pred CCccHHHHHHH
Confidence 86777776543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=404.30 Aligned_cols=234 Identities=49% Similarity=0.807 Sum_probs=213.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999632 356999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000777 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1288)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~i 543 (1288)
|++|++++|+.|++||+.++.+....+++...++..++.++++.+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987654455566677777888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHH
Q 000777 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 544 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1288)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++.++ .+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999998778899999999999977999999999999999999999876 56666544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=373.59 Aligned_cols=471 Identities=20% Similarity=0.223 Sum_probs=348.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000777 109 FVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQL 188 (1288)
Q Consensus 109 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~ 188 (1288)
++++.+.-.+.+.+........+++...++|.++.++++..|+.-+++- .+++++.++++|+..|.-.+ ..++.+.+.
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa 131 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNISFAF-SRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhcccccceeehH-hhhHHHHHH
Confidence 4444444555566666777788999999999999999999999999974 89999999999999998444 456778888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH--
Q 000777 189 MATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM-- 266 (1288)
Q Consensus 189 ~~~~~~~~i~~~~~~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~-- 266 (1288)
+...+++.+.++++|+++.++.++.+.+..+...+...+..+......+..++..+..+..+.|.|..+......+..
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 888999999999999999888887777777777777777777777777888899999999999999998775433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1288)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (1288)
+.|....+...+..............+.+++.+....+++|..... +.-+.....++....+.+..|+.++...++.
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~ 288 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPT 288 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhH
Confidence 1222111111111111111111112223333333333444443222 1112223334444455556788888889999
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCCCCCcccCCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHH
Q 000777 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426 (1288)
Q Consensus 347 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKS 426 (1288)
+..|.+|.+++.++-..++..+-... .+.+++ ..|+++||.|+|+.. ..-+..||++|++||++-|+|.||||||
T Consensus 289 l~~AqvA~~kiakle~~~~~a~~~~~--q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 289 LLTAQVAFNKIAKLELAPYKADFPRP--QAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred HHHHHHHHHHHHHhhcCCccccCCCC--CcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHH
Confidence 99999999999887543332211111 112222 369999999999732 3557889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCCC-CCHHHHHHHHHHcCHHHHH
Q 000777 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFI 505 (1288)
Q Consensus 427 Tl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i 505 (1288)
|++++|.|+|.|++|+|++||+++..-++++.|+-++-|+-|.|||..++ |.+. ++.+.+...++...+....
T Consensus 364 T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999998755 4444 5666666555544433322
Q ss_pred HhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchh
Q 000777 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST 583 (1288)
Q Consensus 506 ~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~ 583 (1288)
++.+|--+ ...||-|||.|+|+--|++-+.||++|||=-+--||.=++++.+.+..+. .|||++.||||=..
T Consensus 438 -sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 438 -SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred -cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 22222111 24699999999999999999999999999999999999999988775543 48999999999999
Q ss_pred hhhcCEEEEEeCCEEeEe
Q 000777 584 VRNADMIAVIHRGKIVEK 601 (1288)
Q Consensus 584 ~~~~d~i~~l~~G~i~~~ 601 (1288)
...|||++.+++|+++|.
T Consensus 512 F~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 512 FIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhHHHHHHHhcCceeec
Confidence 999999999999999874
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=403.67 Aligned_cols=233 Identities=60% Similarity=0.953 Sum_probs=214.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCC
Q 000777 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202 (1288)
Q Consensus 1123 ~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ 1202 (1288)
|+||++.+|+.|++||+.++.. ..+.+++.++++..++.+++..+|.|+++.++..+..||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988632 345667778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHH
Q 000777 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278 (1288)
Q Consensus 1203 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1278 (1288)
+|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++... .+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 99999999999999999999999998888999999999999988999999999999999999999876 6666654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=397.48 Aligned_cols=214 Identities=32% Similarity=0.518 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|.+|+|++||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC-CCchhHHHHHhcCCCCC-------CH---HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000777 463 GLVSQEPV-LFTGSIKDNIAYGKDDA-------TT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 463 ~~v~Q~~~-l~~~ti~~ni~~~~~~~-------~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 531 (1288)
|||||++. -|..||+|-+.+|+-.+ ++ +.+.++++..++.++ ..+...+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 99999974 56779999999985321 22 235555666655554 3445678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 532 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
.|||||+++|+||+||||||+||.....++++.++++.+ ++|+|+|.|+++... .||++++|++|+++..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999999874 589999999999875 59999999999999999999987
Q ss_pred cC
Q 000777 609 ED 610 (1288)
Q Consensus 609 ~~ 610 (1288)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=399.16 Aligned_cols=221 Identities=38% Similarity=0.625 Sum_probs=207.1
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcc
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1120 (1288)
|.|+++|++++|+.. ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 458999999999743 3469999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
++|+||++.+|++|++||+.+.. ..+.+++.++++..++.+++.++|.|+++.+++.+.+||||||||++|||||+++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998652 3567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~ 1264 (1288)
|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999999998778999999999999989999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=402.49 Aligned_cols=235 Identities=56% Similarity=0.853 Sum_probs=217.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 236999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCC
Q 000777 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202 (1288)
Q Consensus 1123 ~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ 1202 (1288)
|++|++.+|++|++||+.++.. ..+++++.++++..++.+++..+|.|+++.+.....+||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988632 456777888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHHH
Q 000777 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281 (1288)
Q Consensus 1203 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1281 (1288)
+|||||||++||+++...+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|+++++..+ .+.|+.++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 99999999999999999999999988778899999999999988999999999999999999999885 6778777654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=415.15 Aligned_cols=219 Identities=34% Similarity=0.564 Sum_probs=194.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
..++++||+++|+ +..+++|+||+|++||+++++|||||||||+|++|+|+.+|++|+|.+||+++..++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999996 46799999999999999999999999999999999999999999999999999998876 468
Q ss_pred eEEEcCCCCCC-chhHHHHHhcCCCC---CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 462 IGLVSQEPVLF-TGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
|++|||+..|| +.||+|||.||... ..+ +++.++++.+++.++-.+. +.+|||||+|||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----------p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-----------PHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-----------hhhhChHHHHHHHH
Confidence 99999999999 57999999999761 121 3566777777766655554 46999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
||||..+|++||||||.||||.+-+..++..++++.+ +.|.|+|||+.++... +|||+||++|+|...|+|+|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999999999888754 6899999999998765 999999999999999999999998
Q ss_pred CCchHH
Q 000777 611 PEGAYS 616 (1288)
Q Consensus 611 ~~~~~~ 616 (1288)
|...|.
T Consensus 228 P~~~fV 233 (352)
T COG3842 228 PATRFV 233 (352)
T ss_pred cchHHH
Confidence 765543
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=402.35 Aligned_cols=236 Identities=67% Similarity=1.060 Sum_probs=214.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++..+.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997432346999999999999999999999999999999999999999999999999998888878888999
Q ss_pred EEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCC
Q 000777 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202 (1288)
Q Consensus 1123 ~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ 1202 (1288)
|+||++.+|+.|++||+.++.. ....+++.+.++..++.+++..+|.|+++.++....+||||||||++|||||+.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987632 345667778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHHHHHH
Q 000777 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIA 1280 (1288)
Q Consensus 1203 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1280 (1288)
+|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+.+++... .+.+++++.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK 236 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence 99999999999999999999999987778899999999999988999999999999999999999875 566666553
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=372.60 Aligned_cols=476 Identities=21% Similarity=0.239 Sum_probs=369.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHHHHHHH
Q 000777 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALAR 843 (1288)
Q Consensus 764 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~ 843 (1288)
...++++.+...+.+.+........++....++|.++.++++..|+.-+++ ...++++.++++|+.++. +-...++.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHH
Confidence 444555556666677777888889999999999999999999999999985 789999999999999998 55566778
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH-
Q 000777 844 IVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE- 922 (1288)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~- 922 (1288)
+.++++..+++++.+.+.|+++.++.++.+.+..+..++.+....+.....++...+..+..+..++|.++++..+.-.
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 9999999999999999999999999888888888888888888777788888889999999999999999988654322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 923 -KVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1288)
Q Consensus 923 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1288)
...+.|....+...+...+.+.........++.+.+......+|....+... +......+...+.+...|+.+...
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~---st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWA---STNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhhHHHHHHHHHHHHhhHHHHHHh
Confidence 2223333333333322222222221223344455555555566665544332 222333355566777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccCCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 000777 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081 (1288)
Q Consensus 1002 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SG 1081 (1288)
..+....+..+.+++.++-..++...-..+ .. .|+. ..|+++||.|+|++. .--+..||++|++||.|-|+|.||
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~~~~-q~-~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NG 359 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADFPRP-QA-FPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNG 359 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccCCCC-Cc-CCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCC
Confidence 999999999999999987653332211111 11 1222 359999999999743 245788999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhch
Q 000777 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161 (1288)
Q Consensus 1082 sGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l 1161 (1288)
|||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|.+||+.++ |+...++++.+...++...+
T Consensus 360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999765 54334788888887776665
Q ss_pred hHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEec
Q 000777 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAH 1239 (1288)
Q Consensus 1162 ~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaH 1239 (1288)
..-. ++.+|-=+ ...||-|||.|+|+--|++-+.+|++|||=-+--||.=.+...+.+-... .|+|++.|||
T Consensus 434 ~~kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH 507 (546)
T COG4615 434 AHKT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507 (546)
T ss_pred hhhh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec
Confidence 4432 22222111 24799999999999999999999999999999999999999888765443 5899999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEec
Q 000777 1240 RLSTIKNADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1240 rl~ti~~~DrI~vl~~G~Ive~G 1262 (1288)
+-.-...|||++.|++|+++|.-
T Consensus 508 Dd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 508 DDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred CchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999863
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=418.43 Aligned_cols=226 Identities=29% Similarity=0.489 Sum_probs=193.5
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH---Hh
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1118 (1288)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999998886544 58
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
++|+||||++.+|. .|++||+.++.. ...+ ++++.++++.+++.++.. ..+..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999995 799999986421 1122 234667777777765533 335689999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||+.+|+|||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.++. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999754 7899999999999966 99999999999999999999987
Q ss_pred CCCcHH-HHHH
Q 000777 1270 IPDGFY-ASLI 1279 (1288)
Q Consensus 1270 ~~~g~y-~~L~ 1279 (1288)
++...+ ++++
T Consensus 231 ~p~~~~~~~~~ 241 (343)
T TIGR02314 231 HPKTPLAQKFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 655444 4444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=393.63 Aligned_cols=215 Identities=33% Similarity=0.501 Sum_probs=193.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.++++||+|+|++ +++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.|+.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999973 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-CCchhhHHHHHhcCCCC---------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1122 GLVSQEP-VLFNDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1122 ~~V~Qd~-~Lf~gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
+||||++ .-|.-|++|=+.+|+.+ +.+++.+.+|++..++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 56678999999888532 1123357888999999888543 2346999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhh-hhcCEEEEEeCCEEEEecChhhhh
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
.|||||.++|+||+||||||+||.....+|++.+++.. +++|+|+|.|++... +.||++++|++|+|+..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999986 368999999999876 559999999999999999999988
Q ss_pred cC
Q 000777 1269 NI 1270 (1288)
Q Consensus 1269 ~~ 1270 (1288)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 63
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=444.83 Aligned_cols=213 Identities=25% Similarity=0.387 Sum_probs=174.9
Q ss_pred EEEEEEEECCC-CCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--CCCceEEECCeeccCCCHHHHhcc
Q 000777 1044 ELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1044 ~~~nVsf~Y~~-~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~idG~di~~i~~~~lR~~ 1120 (1288)
..+|+.|.-+. ...+..|+|||=-++||-.+||+|+||||||||+++|.|=.. -.+|+|+|||.+..+ +..++.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 34444443321 124579999999999999999999999999999999998643 247899999998865 789999
Q ss_pred eEEEccCC-CCchhhHHHHHhcCC----CCCCCHHH----HHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1121 MGLVSQEP-VLFNDTIRANIAYGK----GGDATEAE----IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1121 i~~V~Qd~-~Lf~gTIreNl~~g~----~~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
+|||.|++ ++=.-||||-|.|.. +.+.+++| ++++.+..++.++- |..||..|..||..||.||
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhcee
Confidence 99999976 677789999997641 23444443 56666666665553 5679999999999999999
Q ss_pred HHHHHHcCCC-CEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhh--hhcCEEEEEeC-CEEEEecChhh
Q 000777 1192 AIARAIVKDP-KILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTI--KNADMIAVVKN-GVIVEKGKHEN 1266 (1288)
Q Consensus 1192 aiARALlr~p-~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti--~~~DrI~vl~~-G~Ive~Gt~~e 1266 (1288)
.||=-|+.|| .||+||||||+||+++...|.+.+++.. .|+||++.=|..+.. +..|+++.|++ |+.|-.|+..+
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999 9999999999999999999999999986 789999999999863 67999999975 89998887543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=397.92 Aligned_cols=227 Identities=49% Similarity=0.856 Sum_probs=211.2
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcc
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1120 (1288)
+.|+++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999963 2359999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
++|+||++.+|++|++||+.++.. ...++++.++++..++.+++..+|.|+++.++....+||||||||++|||||+++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999987632 3456778888999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+.++++++
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999999998778999999999999988999999999999999999998765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=356.00 Aligned_cols=209 Identities=32% Similarity=0.551 Sum_probs=187.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
+.+++|.|+|... =-..+++|++||++||+||||||||||+++|+||..|.+|+|.|+|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 5678999999632 13678999999999999999999999999999999999999999999998776653 4799
Q ss_pred EEcCCCCCCc-hhHHHHHhcCCC-CC-----CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKD-DA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
+++|+..||. .||++||.+|.. .. ..+++..++..+++..+.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 699999999943 21 23668888999999999999984 899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|+++-+||+||||+|+|||.-+.++...+..++. +.|+++|||.++.+.. +|+++++++|+|.++|+.++++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999999999999999988874 5699999999999976 999999999999999999999875
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=362.64 Aligned_cols=207 Identities=29% Similarity=0.494 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH---HHhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 460 (1288)
|+|+||+++|+. ++++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|+|+..+..+ -+|+
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 789999999985 36799999999999999999999999999999999999999999999999999876644 5899
Q ss_pred ceEEEcCCCCCC-chhHHHHHhcCCCC------CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
+||+|+||..|. ..||.||++|+..- .-.+++.++++.+++.+....+| .+||||||||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999877 56999999997432 12356778888888888887887 5999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecC
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 603 (1288)
|||++.+|++||-||||.+|||++...|++.+.++.+ |.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999998864 7899999999999987 67899999999987543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=400.84 Aligned_cols=239 Identities=32% Similarity=0.596 Sum_probs=217.1
Q ss_pred CcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHh
Q 000777 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1288)
Q Consensus 380 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 459 (1288)
..+.|+++|++++|+.. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45789999999999642 35699999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+.|+||+|+|++|++|++||+..... ...+++..+.+..++.+.++.+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999975432 23456677778888889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHHH
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1288)
+|++|||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|..++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999988778999999999999988999999999999999999999876566676665
Q ss_pred H
Q 000777 620 R 620 (1288)
Q Consensus 620 ~ 620 (1288)
.
T Consensus 254 ~ 254 (257)
T cd03288 254 R 254 (257)
T ss_pred h
Confidence 3
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=381.35 Aligned_cols=197 Identities=36% Similarity=0.532 Sum_probs=169.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999963 6799999999999999999999999999999999999999999999999887432 3579
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCCCC--H----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT--T----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~--~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
+||||++.||+ .||+||+.++.+... . ++..+.++.+++.++ -+..+.+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~-----------~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGF-----------EDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcch-----------hhcCccccChHHHHHHHHHH
Confidence 99999999995 799999999866421 1 234444445544444 44555799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeC--CEE
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR--GKI 598 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~--G~i 598 (1288)
||+.+|+||+||||++|||+.|+..+++.+.++.+ ++|+++|||++++.-. +|||++|.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99999999999999999999999999999988754 5899999999999866 999999999 445
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=375.54 Aligned_cols=227 Identities=30% Similarity=0.490 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC-HHHHhc
Q 000777 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRK 460 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~ 460 (1288)
.++++|+++.|+... ..++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997421 125999999999999999999999999999999999999999999999998876543 346778
Q ss_pred ceEEEcCCCC--CC-chhHHHHHhcCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 461 KIGLVSQEPV--LF-TGSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 461 ~i~~v~Q~~~--l~-~~ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
.|-+|||||. |- ..||++-|.-+... ...+++.++++.+++.+ ....+++.+|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------HHHhcCchhcChhHHHHHHH
Confidence 9999999996 32 34777777543221 12344566666665533 12334556999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCc--eEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~--t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
||||.-+|++||||||||+||+.....|++.+.++.+++ |.|+|||+++.+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999999988754 99999999999988 999999999999999999999987
Q ss_pred CCchHHHHH
Q 000777 611 PEGAYSQLI 619 (1288)
Q Consensus 611 ~~~~~~~~~ 619 (1288)
+...|.+..
T Consensus 233 ~~h~ytr~L 241 (252)
T COG1124 233 PSHPYTREL 241 (252)
T ss_pred CccHHHHHH
Confidence 677776643
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=373.39 Aligned_cols=217 Identities=32% Similarity=0.565 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC---HHHHh
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r 459 (1288)
.|+++||+..||+ ++.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..+. .+.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999983 578999999999999999999999999999999999999999999999999998776 45678
Q ss_pred cceEEEcCCCCCCc-hhHHHHHhcCCCCC-----------CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHH
Q 000777 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 527 (1288)
++|||++|++.|.. .||.+|+..|.-.. +.++.. .+.+.++++ |+....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~------~Al~aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKA------QALDALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHH------HHHHHHHHc--CcHHHHHHHhccCCcch
Confidence 89999999999885 59999999885432 222222 222334444 55545556778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecCh
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1288)
+|||+|||||+++|+|+|-|||+|+|||.+.+.+++.|+++.+ +.|+|+.-|+++.+++ ||||+-|++|+|+.+|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9999999999999999999999999999999999999998763 6899999999999976 999999999999999999
Q ss_pred hHHhc
Q 000777 605 SKLVE 609 (1288)
Q Consensus 605 ~~l~~ 609 (1288)
+|+-+
T Consensus 233 ~el~~ 237 (258)
T COG3638 233 SELTD 237 (258)
T ss_pred hhhhH
Confidence 98643
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=403.98 Aligned_cols=220 Identities=33% Similarity=0.544 Sum_probs=196.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+.+|.+. .+|+|+||+|+.||.++|+||||||||||+++|+||.+|++|+|+|||.|+++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2899999999999999999999999999999999999999999999999999998876 789
Q ss_pred EEEccCCCCch-hhHHHHHhcCCCC-----CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~~-----~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
++|+|++.||+ .||+|||+|+... +..++++.++++..++.+.+++.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999996 5999999987421 223667888888888887766544 579999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
||+++|++++||||.|+||+.....+...|+++.+ +.|+|.|||+...+.. +|||+||.+|+|.+.|+|.|+.++|.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988653 5799999999988765 99999999999999999999999887
Q ss_pred cHHHH
Q 000777 1273 GFYAS 1277 (1288)
Q Consensus 1273 g~y~~ 1277 (1288)
..|-.
T Consensus 227 n~fVA 231 (338)
T COG3839 227 NLFVA 231 (338)
T ss_pred chhhh
Confidence 76643
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=393.48 Aligned_cols=227 Identities=50% Similarity=0.857 Sum_probs=209.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
+.|+++|++++|+. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999962 2469999999999999999999999999999999999999999999999999988777788889
Q ss_pred eEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
++|++|++.+|.+|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876655566777778888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999998778899999999999878999999999999999998887653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=388.81 Aligned_cols=216 Identities=36% Similarity=0.629 Sum_probs=195.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeecc-CCCHHHHhcc
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQ 1120 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~lR~~ 1120 (1288)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999854 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEccCC--CCchhhHHHHHhcCCCC-CCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1121 MGLVSQEP--VLFNDTIRANIAYGKGG-DATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1121 i~~V~Qd~--~Lf~gTIreNl~~g~~~-~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
+|+|+|+| ++|..||.|.++||+.. ..+.+ .+.++++.+++.++. .....+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcceeeHHh
Confidence 99999999 89999999999998532 23444 466777788877663 24457899999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCC--ceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN--RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~--~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|.+|..+|++||||||||+||+...+.+.+.++++.+. +|+|+|||+++.+.. |||++||++|+++.+|+|++++++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999998644 699999999999987 999999999999999999999986
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=394.39 Aligned_cols=232 Identities=50% Similarity=0.808 Sum_probs=211.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|+. ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000777 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1288)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~i 543 (1288)
|++|++++|+.|++||+.++.+..+.+++...++..++.+.+..+|.|+++.++.++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987665566667777888888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcCCCchHHHH
Q 000777 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1288)
Q Consensus 544 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1288)
|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+. ...|...
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHH
Confidence 9999999999999999999999988777899999999999988999999999999999999888764 4445443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=384.85 Aligned_cols=219 Identities=32% Similarity=0.503 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 461 (1288)
.|+++|+++.|+ ..++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||..+.+.+. ....++
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 378899999996 3568999999999999999999999999999999999999999999999994333222 333468
Q ss_pred eEEEcCCCCCC-chhHHHHHhcCCCC--------CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000777 462 IGLVSQEPVLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 532 (1288)
||+|+|+..|| ..||++||+||.+- ....++.+.++++++...-++ .+.+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHHHH
Confidence 99999999988 67999999999631 122445555666655544444 45799999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 533 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
|||||..+|+||+||||+++||++-++.+.+.|+++.. +.|+++||||.+++.. ||||++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999999999999999999988764 6799999999999866 99999999999999999999998
Q ss_pred CCCchH
Q 000777 610 DPEGAY 615 (1288)
Q Consensus 610 ~~~~~~ 615 (1288)
+|+..|
T Consensus 228 ~P~s~f 233 (345)
T COG1118 228 HPASRF 233 (345)
T ss_pred CCCccc
Confidence 876544
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=412.28 Aligned_cols=225 Identities=31% Similarity=0.533 Sum_probs=189.4
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH---Hh
Q 000777 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1288)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 459 (1288)
|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 247999999999999999999999999999999999999999999999999998876544 57
Q ss_pred cceEEEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
++|+||||++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+.+|||||||||+||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999985 799999998642 122222111 112233333 45445566678999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCc
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1288)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++++++.++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999999864 6899999999999976 999999999999999999999876554
Q ss_pred hH
Q 000777 614 AY 615 (1288)
Q Consensus 614 ~~ 615 (1288)
.+
T Consensus 235 ~~ 236 (343)
T TIGR02314 235 PL 236 (343)
T ss_pred HH
Confidence 44
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=378.11 Aligned_cols=209 Identities=34% Similarity=0.526 Sum_probs=172.2
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH---H-
Q 000777 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I- 458 (1288)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~- 458 (1288)
++++||++.|.... ...+|+++||+|++||+++|+||||||||||+++|.|+..|++|.|.++|+|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 247999999999999999999999999999999999999999999999999999887543 3
Q ss_pred hcceEEEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHH
Q 000777 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~~LSgGqkqri~lA 534 (1288)
|++||||||+..|.+ .|++|||.++.. .....+..++ +.+.++.+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 468999999999885 599999996421 1111111111 11222333 4443333 56789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEe
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 599 (1288)
|||+.+|++++.||||++||+++.+.|++.++++.+ ++|+|+|||+......|||++.|.+|++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999854 67999999999999999999999999954
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=393.88 Aligned_cols=226 Identities=55% Similarity=0.908 Sum_probs=208.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 236999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000777 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1288)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~i 543 (1288)
|++|++.+|..|++||+.++.+.....++...++..++.++++.+|.|+++..+..+.+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987665555666777788888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 544 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999998778899999999999978999999999999999999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=394.05 Aligned_cols=227 Identities=63% Similarity=1.044 Sum_probs=207.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|+...++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999996433357999999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000777 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1288)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~i 543 (1288)
|++|++.+|+.|++||+.++.+....++.....+..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655555666667777788889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 544 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999988777899999999999888999999999999999998888764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=406.59 Aligned_cols=222 Identities=27% Similarity=0.466 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCC-------
Q 000777 1042 EIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------- 1112 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 1112 (1288)
.|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcceEEEccCC--CCchhhHHHHHhcCCC-CCCCHHHHHHHHHHhchhHHHHhhhcccc-ccccCC
Q 000777 1113 ---------QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEAEIQAASEMANAHKFICSLQQGYD-TMVGER 1179 (1288)
Q Consensus 1113 ---------~~~~lR~~i~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~ 1179 (1288)
+...+|++|+||+|+| .+|+.|++||+.++.. ...++++..+ . ..+++..+ |++ ...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 6999999999988631 1234433321 1 12333333 443 346677
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh-hcCEEEEEeCCE
Q 000777 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIK-NADMIAVVKNGV 1257 (1288)
Q Consensus 1180 G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ 1257 (1288)
+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998764 5789999999999875 599999999999
Q ss_pred EEEecChhhhhcC
Q 000777 1258 IVEKGKHENLINI 1270 (1288)
Q Consensus 1258 Ive~Gt~~eLl~~ 1270 (1288)
+++.|+|++++..
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999987654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=387.97 Aligned_cols=215 Identities=37% Similarity=0.636 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCC-CCCHHHHhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 461 (1288)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++++|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999754 68999999999999999999999999999999999999999999999999998 4778899999
Q ss_pred eEEEcCCC--CCCchhHHHHHhcCCCCC--CHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 462 IGLVSQEP--VLFTGSIKDNIAYGKDDA--TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~ni~~~~~~~--~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
+|||+|+| ++|..||.|.++||.++. +.+ ++.++++.+++.++ ......+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-----------~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL-----------LDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-----------ccCCccccCCcceeeHHh
Confidence 99999999 799999999999997653 232 34445555554443 455667999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC--ceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~--~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|.+|..+|++||||||||+||+...+.+.+.++++.++ +|+|++||+++.+.. ||++++|++|+++.+|++.++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999999754 699999999999977 999999999999999999998875
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=389.07 Aligned_cols=220 Identities=42% Similarity=0.721 Sum_probs=202.3
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcc
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1120 (1288)
+.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2469999999999999999999999999999999999999999999999999988887778899
Q ss_pred eEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
++|+||++.+|..|++||+.++.. ..+++++.++++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999987532 3456678889999999999999999999999988999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G 1262 (1288)
|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999987668999999999988789999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=350.44 Aligned_cols=212 Identities=32% Similarity=0.515 Sum_probs=190.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|.+++|.|+|...+ =.++++|++||+|||+||||||||||++++.||..|.+|+|+|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999996432 368999999999999999999999999999999999999999999999877664 46799
Q ss_pred EEccCCCCch-hhHHHHHhcCCCCC-----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
+++||..||. -||++|+.+|..+. ...+.+..++..+|+.+|..++|. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 79999999885432 345678999999999999999883 699999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
|+|+-|||+||||.|+||+.-..++...+.+.. ++.|+++|||..+-++. +||++++++|||++.|+-+++++.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999999999999998776 45799999999999866 99999999999999999999998643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=392.51 Aligned_cols=473 Identities=16% Similarity=0.167 Sum_probs=366.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCC---CChhHHHHHHHhhHHHHHHHHHHH
Q 000777 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPE---HSSGAIGARLSADAASVRALVGDA 840 (1288)
Q Consensus 764 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~fd~~~---~~~G~l~~r~~~D~~~i~~~~~~~ 840 (1288)
+.+|..++.+..++...+.|+...+..++...|.+.+.++.+...-.|+.... +.+-..-.|+..|+...-......
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 34555666666667777888888888888888989999988887754443211 111234579999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 841 LARIVQNISTAAAGLIIAF---------------TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVA 905 (1288)
Q Consensus 841 l~~~~~~~~~~~~~~~~~~---------------~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1288)
...++.+++.++...+++. .+...+.+++++.+++--++.+...+.+.+..-+..+.+++....+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 7888888877777666665 2333444444444554445555666667777777788888888888
Q ss_pred HHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Q 000777 906 NDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKV 985 (1288)
Q Consensus 906 ~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~ 985 (1288)
...-++.+.|..|+-|+...++.++..+.......+..........++.....+...+-+..++.....|.+++|+++..
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 88999999999999999888888877777666655555444444444444444444555566777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCCCCCCC--cc---ccCCCccEEEEEEEEECCCCCCc
Q 000777 986 FFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES--KIDPSDESG--TI---LEDVKGEIELHHVSFKYPSRPDV 1058 (1288)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~--~~~~~~~~~--~~---~~~~~g~I~~~nVsf~Y~~~~~~ 1058 (1288)
..++..+...++.+....+....-.+...|+.++.+.-. +.+...... .. ....+..|+|+||+..-|+. .
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~ 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--Q 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--C
Confidence 999999999999999999999999999999988764321 101100000 00 01114679999999999854 3
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchhhHHHH
Q 000777 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1288)
Q Consensus 1059 ~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~gTIreN 1138 (1288)
+.|+++||+|+|||.+-|.|+||||||||+++|.|+++--+|+|.+-. -..+-|+||.|++-.||+||-
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHH
Confidence 789999999999999999999999999999999999999999886641 134689999999999999999
Q ss_pred HhcCCCC-CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHH
Q 000777 1139 IAYGKGG-DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217 (1288)
Q Consensus 1139 l~~g~~~-~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~t 1217 (1288)
|+|-... +.+|+++.++|.+++|.+++.++.+ . ..-..-||+|||||||+||.||++|++++|||||||||+++
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~ 550 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-E----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-c----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH
Confidence 9985433 3899999999999999999999753 2 22456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEe
Q 000777 1218 ERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVK 1254 (1288)
Q Consensus 1218 e~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~ 1254 (1288)
|..+.+.+++..+++|+|.|+||.......++.+-++
T Consensus 551 e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 551 EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999987777677766554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=367.81 Aligned_cols=227 Identities=32% Similarity=0.502 Sum_probs=196.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHHh
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLR 1118 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR 1118 (1288)
.|++++|+++|. ++.||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+++|.|+.+++. ..+|
T Consensus 8 ~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 599999999996 3479999999999999999999999999999999999999999999999999988875 4579
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCC--CCCCCHHHHHH----HHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGK--GGDATEAEIQA----ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~--~~~~sd~ei~~----al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
+++|+++|.-.||+ -||+||++|-. ..+.++.++++ .++.+|+...+. ..-++.||||.+.|+
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~----------~~~PsELSGGM~KRv 154 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAA----------DLYPSELSGGMRKRV 154 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhh----------hhCchhhcchHHHHH
Confidence 99999999999996 59999998731 12345555544 455566654421 123568999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|||||+.-+|+||++|||||+|||.+...+-+.|+++.+ +.|+|+|||+++++.. ||||+++.+|+|+..|+++||.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999887653 6799999999999977 8999999999999999999999
Q ss_pred cCCCcHHHHHHHH
Q 000777 1269 NIPDGFYASLIAL 1281 (1288)
Q Consensus 1269 ~~~~g~y~~L~~~ 1281 (1288)
+..+.+.++.+..
T Consensus 235 ~sd~P~v~qf~~G 247 (263)
T COG1127 235 ASDDPWVRQFFNG 247 (263)
T ss_pred hCCCHHHHHHhcC
Confidence 9867777776643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=354.97 Aligned_cols=209 Identities=30% Similarity=0.494 Sum_probs=185.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC---HHHHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR~ 1119 (1288)
|+|+||+.+|+.. +++|+||||+|++||.+-|+|||||||||++|+|++...|+.|+|+++|.|+..++ ..-||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999854 57999999999999999999999999999999999999999999999999998775 456999
Q ss_pred ceEEEccCCCCc-hhhHHHHHhcCC-----CCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1120 QMGLVSQEPVLF-NDTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf-~gTIreNl~~g~-----~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
+||+|+||..|+ +-|+.||++|.. ++..-.+++.++++.+|+.+-...+| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999776 679999998742 11223456778999999998887777 4699999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhhc-CEEEEEeCCEEEEecCh
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKNA-DMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~-DrI~vl~~G~Ive~Gt~ 1264 (1288)
|||++.+|++||-||||-+||+++...|++.+.+.- .|.||++.||+.+.+..+ -|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999874 678999999999999874 67999999999976654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=378.83 Aligned_cols=210 Identities=29% Similarity=0.488 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++|+|.+ . ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.+.|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 5899999999963 2 59999999999999999999999999999999999999999999999988765332 4689
Q ss_pred EEEcCCC---CCCchhHHHHHhcCCCCC----------CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000777 463 GLVSQEP---VLFTGSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 529 (1288)
|||||.. |-|+.||+|-+.+|.... +.+++.++++.+++.++. .....+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHH
Confidence 9999965 568999999999984321 136677777777766543 4456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||.|||||+++|++|+|||||+++|+.++..+.+.|+++++ ++||++||||++.+.. +|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999999976 7999999999999876 9999999 4578899999998
Q ss_pred hcC
Q 000777 608 VED 610 (1288)
Q Consensus 608 ~~~ 610 (1288)
.+.
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=386.47 Aligned_cols=220 Identities=35% Similarity=0.653 Sum_probs=203.8
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
|.++++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999632 3579999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
++|++|++.++++|++||+.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 4566778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecC
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 603 (1288)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999877789999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=366.25 Aligned_cols=223 Identities=37% Similarity=0.552 Sum_probs=193.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC---HHHHh
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLR 1118 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR 1118 (1288)
.|+++||+.+||+ ++++|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|+++|.++...+ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999998876 77889
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCCCC-------------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCC
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGKGG-------------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~~~-------------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1184 (1288)
++||+|+|.+-|.+ -|+.+|+..|... ..+.....+||+.+|+.++.. .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999998874 6999999755321 223345667888888877642 3456899
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 000777 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261 (1288)
Q Consensus 1185 gGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~ 1261 (1288)
|||+||++|||||..+|+|+|-|||+|+|||.+.+.|++.|++.. .+.|+|+.-|.++..+. ||||+-|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999875 56899999999999976 999999999999999
Q ss_pred cChhhhhcCCCcHHHHHHH
Q 000777 1262 GKHENLINIPDGFYASLIA 1280 (1288)
Q Consensus 1262 Gt~~eLl~~~~g~y~~L~~ 1280 (1288)
|++.||-+ ..+.+.+.
T Consensus 230 g~~~el~~---~~~~~iYg 245 (258)
T COG3638 230 GPASELTD---EALDEIYG 245 (258)
T ss_pred CChhhhhH---HHHHHHhc
Confidence 99999643 34444443
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=390.44 Aligned_cols=213 Identities=37% Similarity=0.577 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC-----CCCCceEEECCeeccCCC--HH
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITLDGVEIQKLQ--LK 1115 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-----~p~~G~I~idG~di~~i~--~~ 1115 (1288)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998776 66
Q ss_pred HHhcceEEEccCCCCchhhHHHHHhcCCCC-CC-----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DA-----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-~~-----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
.+|++++|+||++.+|..|++||+.++... .. .++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999989999999864210 11 23456677777777655433211 4689999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
|++|||||+++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999998656899999999999865 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=391.00 Aligned_cols=219 Identities=35% Similarity=0.521 Sum_probs=187.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1119 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 369999999999999999999999999999999999999999999999999987764 56889
Q ss_pred ceEEEccCCCCchh-hHHHHHhcCCC--CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1120 QMGLVSQEPVLFND-TIRANIAYGKG--GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~g-TIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
+++||||++.+|.. |++||+.++.. ...+. +++.++++..++.++. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 99999999999985 99999986421 11232 2345556666554432 3344679999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999986
Q ss_pred CCCcHHH
Q 000777 1270 IPDGFYA 1276 (1288)
Q Consensus 1270 ~~~g~y~ 1276 (1288)
. ...|.
T Consensus 227 ~-~~~~~ 232 (235)
T cd03261 227 S-DDPLV 232 (235)
T ss_pred C-CChhh
Confidence 4 44443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=387.60 Aligned_cols=219 Identities=52% Similarity=0.838 Sum_probs=199.5
Q ss_pred CCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHh
Q 000777 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1288)
Q Consensus 1039 ~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 1118 (1288)
..+.|+++|++++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753234699999999999999999999999999999999999999999999999999888878888
Q ss_pred cceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
++++|+||++.+|++|++||+.++.. ....+++++..+..++.+++..+|.|+++.++....+||||||||++|||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987632 33455666666777888999999999999999999999999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEE
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVI 1258 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~I 1258 (1288)
++|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998777899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=400.04 Aligned_cols=222 Identities=35% Similarity=0.540 Sum_probs=198.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+.+|. +..+++|+||+|++||.++|+|||||||||++++|+||..|++|+|.+||.||..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 34799999999999999999999999999999999999999999999999999998875 5889
Q ss_pred EEEccCCCCc-hhhHHHHHhcCCC--CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEPVLF-NDTIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~~Lf-~gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
++|+|+..|| +.||+||++||.. .... ++.+.++++.+++.++-.+. ..+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----------p~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-----------PHQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-----------hhhhChHHHHHHHHH
Confidence 9999999999 5899999999853 1122 23788899999998875554 457999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhh-hhcCEEEEEeCCEEEEecChhhhhcCC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~Gt~~eLl~~~ 1271 (1288)
|||..+|++||||||-||||.+-...++.-|++.. .+.|.|+|||+-+.. ..+|||+||.+|+|...|+|+|+..+|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999988765 367999999999876 559999999999999999999999998
Q ss_pred CcHHHHHH
Q 000777 1272 DGFYASLI 1279 (1288)
Q Consensus 1272 ~g~y~~L~ 1279 (1288)
...|-.=+
T Consensus 229 ~~~fVA~F 236 (352)
T COG3842 229 ATRFVADF 236 (352)
T ss_pred chHHHHHH
Confidence 77775543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=371.84 Aligned_cols=198 Identities=36% Similarity=0.519 Sum_probs=174.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.+++++|++.|.+ ..||+|+||+|++||.|+||||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999974 4799999999999999999999999999999999999999999999999988543 4579
Q ss_pred EEEccCCCCch-hhHHHHHhcCCCCC-----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+||+|++.||. -|++||+.++.... ...+.+.++++.+|+.+|-.+. +.+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~-----------P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKY-----------PHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcC-----------ccccChHHHHHHHHHH
Confidence 99999999997 79999999874311 1344678889999998886554 4689999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeC--CEE
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKN--GVI 1258 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~--G~I 1258 (1288)
||+.+|+||+||||.+|||+.|...+|+.+.+..+ ++||++|||+.+..- -+|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99999999999999999999999999999988764 589999999998864 5999999999 555
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=382.53 Aligned_cols=220 Identities=43% Similarity=0.744 Sum_probs=200.3
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
++++++|++++|+.. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999632 2569999999999999999999999999999999999999999999999999887777777889
Q ss_pred eEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
++|++|++.+|..|++||+.++.+....+++.+.++..++.+.++.+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999899999998875544556677788888998899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEec
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 602 (1288)
++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999988679999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=390.01 Aligned_cols=220 Identities=33% Similarity=0.522 Sum_probs=193.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCceEEECCeeccCCCHHHHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD---PDAGHITLDGVEIQKLQLKWLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR~ 1119 (1288)
|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|+
T Consensus 3 ~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 3 AKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred eeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 789999999973 369999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ceEEEccCCCCchhhHHHHHhcCCC--C-----CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1120 QMGLVSQEPVLFNDTIRANIAYGKG--G-----DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~gTIreNl~~g~~--~-----~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
+++|+||++.+|..|++||+.++.. . ...++++.++++..++.+++.. ...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 9999999999999999999986521 0 1123356777888887665543 234567789999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCC
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1271 (1288)
|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999998778999999999998864 9999999999999999999998754
Q ss_pred C
Q 000777 1272 D 1272 (1288)
Q Consensus 1272 ~ 1272 (1288)
.
T Consensus 233 ~ 233 (246)
T PRK14269 233 K 233 (246)
T ss_pred C
Confidence 3
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=375.62 Aligned_cols=218 Identities=28% Similarity=0.511 Sum_probs=189.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++|++|+|.+. +||+||||+|++|+.+||+||||||||||+|+++|+.+|++|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 49999999999632 59999999999999999999999999999999999999999999999998876543 5789
Q ss_pred EEEccCC---CCchhhHHHHHhcCCCC---------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1122 GLVSQEP---VLFNDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1122 ~~V~Qd~---~Lf~gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
|||||.. .-|.-||+|=+.+|... ..+.+++.+||+.+++.++. |.++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCccc----ccCcHHHH
Confidence 9999955 46889999999876321 12358899999999999885 34455 59999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK-NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
|+.|||||+.+|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. +|+|+.|. ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999874 8999999999999965 99999886 668899999999
Q ss_pred hcCCCcHHHHHH
Q 000777 1268 INIPDGFYASLI 1279 (1288)
Q Consensus 1268 l~~~~g~y~~L~ 1279 (1288)
+.. ..+.+.+
T Consensus 226 ~~~--~~l~~~~ 235 (254)
T COG1121 226 LTE--ENLEKAF 235 (254)
T ss_pred cCH--HHHHHHh
Confidence 874 3344443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=368.94 Aligned_cols=208 Identities=36% Similarity=0.525 Sum_probs=174.2
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHH-
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWL- 1117 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~l- 1117 (1288)
++++||+..|.... ..++|+|+||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++- ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 2469999999999999999999999999999999999999999999999999998873 434
Q ss_pred hcceEEEccCCCCch-hhHHHHHhc----CCCCC-CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1118 RQQMGLVSQEPVLFN-DTIRANIAY----GKGGD-ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1118 R~~i~~V~Qd~~Lf~-gTIreNl~~----g~~~~-~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
|++||+|+|+..|++ -|++||+.+ ..... ...+.+.+.++..|+.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 557999999998884 699999984 21111 12334555555556554322 144678999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVE 1260 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive 1260 (1288)
||||||+.+|+|++.||||.+||.+|.+.|.+.+++..+ ++|+|+|||+......|||++.|.+|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999853 689999999999999999999999999543
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=396.99 Aligned_cols=218 Identities=30% Similarity=0.525 Sum_probs=191.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999742224699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCchhhHHHHHhcCCCC-CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~--~Lf~gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
+||+|+| .++..|++|||.++... ..+ ++++.++++.+++.++.. ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 46678999999876311 123 245677777777765543 33468999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999988999999999999999999998865
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=386.53 Aligned_cols=225 Identities=33% Similarity=0.590 Sum_probs=193.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCchhhHHHHHhcCCC-CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1122 GLVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~gTIreNl~~g~~-~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
+|+||++.+|+.|++||+.++.. ....++++.+.++..++.+ .........||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987521 1122345566666655531 112345678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCcHHHH
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYAS 1277 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1277 (1288)
|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++..+...|.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 999999999999999999999999998753 7899999999999875 9999999999999999999998765555655
Q ss_pred HH
Q 000777 1278 LI 1279 (1288)
Q Consensus 1278 L~ 1279 (1288)
.+
T Consensus 230 ~~ 231 (241)
T PRK14250 230 LF 231 (241)
T ss_pred HH
Confidence 44
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=405.58 Aligned_cols=220 Identities=31% Similarity=0.501 Sum_probs=192.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|.+ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 469999999999999999999999999999999999999999999999999987664 46889
Q ss_pred EEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+||+|++.+|. .|++||+.|+.. ...+ ++++.++++..++.++.. .....||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999999996 599999998631 1122 346677777777765533 335689999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|+||++|+|++.|+++++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998764 7899999999999855 99999999999999999999998877
Q ss_pred cHHHH
Q 000777 1273 GFYAS 1277 (1288)
Q Consensus 1273 g~y~~ 1277 (1288)
..|..
T Consensus 230 ~~~~a 234 (351)
T PRK11432 230 SRFMA 234 (351)
T ss_pred chHHH
Confidence 65543
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=399.84 Aligned_cols=222 Identities=26% Similarity=0.476 Sum_probs=189.7
Q ss_pred ccEEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCC------
Q 000777 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------ 453 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~------ 453 (1288)
..|+++|++|+|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999996321 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccC
Q 000777 454 ----------QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGE 518 (1288)
Q Consensus 454 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~ 518 (1288)
....+|++|+||+|+| .+|+.||+|||.++... .+.++... .+.+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3456788999999998 68999999999987422 23322211 123455555 665 56788
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-hcCEEEEEeCC
Q 000777 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1288)
Q Consensus 519 ~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~~l~~G 596 (1288)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998874 4789999999999885 59999999999
Q ss_pred EEeEecChhHHhcC
Q 000777 597 KIVEKGTHSKLVED 610 (1288)
Q Consensus 597 ~i~~~g~~~~l~~~ 610 (1288)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998765
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=404.66 Aligned_cols=224 Identities=33% Similarity=0.525 Sum_probs=189.4
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH---Hh
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1118 (1288)
|+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 347999999999999999999999999999999999999999999999999998877544 57
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCCC-CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
++|+||||++.+|. .|++||+.++.. ...+. +++.++++..++.++ ......+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 89999999999886 799999986421 11222 344555555555443 33445689999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999987
Q ss_pred CCCcHHHH
Q 000777 1270 IPDGFYAS 1277 (1288)
Q Consensus 1270 ~~~g~y~~ 1277 (1288)
++...+.+
T Consensus 231 ~~~~~~~~ 238 (343)
T PRK11153 231 HPKHPLTR 238 (343)
T ss_pred CCCcHHHH
Confidence 65444433
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=376.24 Aligned_cols=204 Identities=36% Similarity=0.646 Sum_probs=183.7
Q ss_pred CccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhc
Q 000777 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1288)
Q Consensus 1040 ~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~ 1119 (1288)
.+.++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3569999999999742 236999999999999999999999999999999999999999999999999998888888999
Q ss_pred ceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcC
Q 000777 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr 1199 (1288)
+|+||||+|.+|++|++||+.+.. ..+++++.++++ ++.....|||||+||++||||+++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999997642 345555554443 245678899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 000777 1200 DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1200 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~ 1264 (1288)
+|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999998778999999999999988999999999999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=405.02 Aligned_cols=221 Identities=28% Similarity=0.469 Sum_probs=192.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|+|+.+|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 24699999999999999999999999999999999999999999999999999887754 4789
Q ss_pred EEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+||||++.+|. .|++||+.|+.. ...+ ++++.++++..++.++..+. ..+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRK-----------PRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999995 699999998632 1122 24566778888877665443 3589999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998764 689999999999885 499999999999999999999998876
Q ss_pred cHHHH
Q 000777 1273 GFYAS 1277 (1288)
Q Consensus 1273 g~y~~ 1277 (1288)
..|..
T Consensus 228 ~~~~~ 232 (356)
T PRK11650 228 STFVA 232 (356)
T ss_pred cHHHH
Confidence 55543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=402.74 Aligned_cols=218 Identities=29% Similarity=0.517 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.+.++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 35699999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
+||||++.+|. .||+|||.|+... .+. +++.++++.. |++......+.+|||||||||+|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARIL-----------ELEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc-----------CChhHhhCChhhCCHHHHHHHHHHH
Confidence 99999999995 6999999987532 222 2233344444 4444455566799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
||+++|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998764 6899999999998865 99999999999999999999988765
Q ss_pred chH
Q 000777 613 GAY 615 (1288)
Q Consensus 613 ~~~ 615 (1288)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 444
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=382.19 Aligned_cols=220 Identities=50% Similarity=0.832 Sum_probs=197.3
Q ss_pred CCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH
Q 000777 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1288)
Q Consensus 379 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 458 (1288)
...+.++++|++++|+++.+.++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34577999999999974323469999999999999999999999999999999999999999999999999887777777
Q ss_pred hcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
++.++|++|++.+|..|++||+.++.......++....+...+.++++.+|.|+++.+++.+.+||||||||++|||||+
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999876544444444555556778899999989999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEE
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i 598 (1288)
++|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998777899999999999977999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=389.15 Aligned_cols=226 Identities=29% Similarity=0.462 Sum_probs=192.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1114 (1288)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|++||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3699999999999999999999999999999999999997 48999999999853 345
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCCC-C-C----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-D-A----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-~-~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|+.|++||+.++... . . .++++.++++.+++.+.+ ++.+++ .+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 6788999999999999999999999875210 1 1 234566777777765433 233444 5678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999999
Q ss_pred hcCCCcHHHH
Q 000777 1268 INIPDGFYAS 1277 (1288)
Q Consensus 1268 l~~~~g~y~~ 1277 (1288)
.+++...|.+
T Consensus 237 ~~~~~~~~~~ 246 (254)
T PRK14273 237 FFNPKNTKTE 246 (254)
T ss_pred HhCCCChHHH
Confidence 8765554443
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=394.54 Aligned_cols=219 Identities=32% Similarity=0.567 Sum_probs=187.0
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC--HHHHh
Q 000777 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ--LKWLR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--~~~lR 1118 (1288)
|+++||+++|+... .+++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999997743 45788
Q ss_pred cceEEEccCC--CCchhhHHHHHhcCCC-CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1119 QQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1119 ~~i~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
++|+||||+| .+|+.|++||+.++.. ...+.+ ++.++++.+++. +++........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999987521 123333 355566666553 01234455678999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhh
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999985 59999999999999999999987
Q ss_pred cC
Q 000777 1269 NI 1270 (1288)
Q Consensus 1269 ~~ 1270 (1288)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=380.37 Aligned_cols=473 Identities=16% Similarity=0.145 Sum_probs=347.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhh------HHHHHHhhHHHHH
Q 000777 102 VSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGE------VVGRMSGDTVLIQ 175 (1288)
Q Consensus 102 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~------l~sr~~~D~~~i~ 175 (1288)
++..+.++..++.+..++...+.|+......+--.-|-+.++++.+...-.|+. . ..|. .=.|+..|+..+-
T Consensus 85 f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l-~-~~~~~~~~dNpDQRi~eDi~~~t 162 (604)
T COG4178 85 FWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL-A-QAGGIGLIDNPDQRIQEDIRNFT 162 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-H-hcccccCCCChHHhHHHHHHHHH
Confidence 444455566666666666666777665555555555556677777776644433 2 3442 3379999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000777 176 DAMGEKVGKFLQLMATFLGGFLIAFIK---------------GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240 (1288)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~l~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1288)
+...+....++.++.+++.-.+++.-. ...+..++++.+++.-++..++++.+.+..-+.++..+
T Consensus 163 ~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA 242 (604)
T COG4178 163 ETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEA 242 (604)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHH
Confidence 887777777777666655544443311 11222333444444455566778888887777777777
Q ss_pred HHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCH
Q 000777 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNG 320 (1288)
Q Consensus 241 ~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 320 (1288)
..-..+...-.+...|-.|+.|+.+.++..+..........+......-..........++.++-+..++.....|.++.
T Consensus 243 ~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 243 DFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 77788888888999999999999988877666555544333332222222222222333333333444556677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCccCCCCCcc--cCCCcccEEEEeEEEEC
Q 000777 321 GQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP-----EIDAYDTKGKI--LDDIRGDIELRDVYFSY 393 (1288)
Q Consensus 321 g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~-----~~~~~~~~~~~--~~~~~~~i~~~~v~~~y 393 (1288)
|.+.....++......++.+...+..+..-++...|+.++.+... ...+....... ....+..|+++|++..-
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~ 402 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRT 402 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEEC
Confidence 999998888888888999999999999999999999988764321 11110100000 01114679999999998
Q ss_pred CCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCc
Q 000777 394 PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473 (1288)
Q Consensus 394 ~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 473 (1288)
|. +...+++.+|++++||.+.|.||||||||||+++|+|++|--+|+|.... ...+-|+||.|++-.
T Consensus 403 p~--~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 403 PD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CC--CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 74 35789999999999999999999999999999999999999999997752 135899999999999
Q ss_pred hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 000777 474 GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1288)
Q Consensus 474 ~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts 551 (1288)
||.||-|+++... .+++++.+++.++++.++++++.+ ...-...||+|||||+|+||.++++|++++|||+||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-----~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-----cCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 9999999998654 789999999999999999998853 223456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEe
Q 000777 552 ALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1288)
Q Consensus 552 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~ 594 (1288)
|||++++..+.+.+++.+.+.|+|-|+||.......++.+-+.
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999889999999999998877766655554
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=387.59 Aligned_cols=223 Identities=32% Similarity=0.505 Sum_probs=191.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CceEEECCeeccCC--CHH
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-----AGHITLDGVEIQKL--QLK 1115 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~~~ 1115 (1288)
|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|++||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEccCCCCchhhHHHHHhcCCC-CC-CC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD-AT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~-~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
.+|++++|+||++.+|..|++||+.++.. .. .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77899999999999999999999986421 11 11 245667777777764432 1234456789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999998865 9999999999999999999998
Q ss_pred cCCCcHH
Q 000777 1269 NIPDGFY 1275 (1288)
Q Consensus 1269 ~~~~g~y 1275 (1288)
..+...+
T Consensus 232 ~~~~~~~ 238 (247)
T TIGR00972 232 TNPKEKR 238 (247)
T ss_pred hCCCChH
Confidence 7644544
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=382.90 Aligned_cols=217 Identities=35% Similarity=0.566 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH---HHHhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 460 (1288)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 47899999996 2469999999999999999999999999999999999999999999999999987654 45778
Q ss_pred ceEEEcCCCCCCch-hHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 461 KIGLVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
.|+||+|++.+|.. |++||+.++.. ..+.++..+. +.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999875 99999987632 1222222111 12234444 55555566778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999998754 6899999999999876 999999999999999999988754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=388.09 Aligned_cols=222 Identities=32% Similarity=0.510 Sum_probs=191.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1114 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999963 369999999999999999999999999999999999975 589999999999865 345
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CC-----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD-----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|..|++||+.++.. .. ..++++.++++.+++.+++.. ..+....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999986421 01 123456777777777654432 23456778999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 999999999999999999999
Q ss_pred hcCCCc
Q 000777 1268 INIPDG 1273 (1288)
Q Consensus 1268 l~~~~g 1273 (1288)
.+.+..
T Consensus 236 ~~~~~~ 241 (253)
T PRK14242 236 FTRPRE 241 (253)
T ss_pred HcCCCc
Confidence 876443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=402.68 Aligned_cols=209 Identities=34% Similarity=0.488 Sum_probs=182.8
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHH----hcceEEEccCCCCch-
Q 000777 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFN- 1132 (1288)
Q Consensus 1058 ~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~~i~~V~Qd~~Lf~- 1132 (1288)
+++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||.|+...+...+ |++++||||++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988887 789999999999997
Q ss_pred hhHHHHHhcCCCC-CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEe
Q 000777 1133 DTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLD 1207 (1288)
Q Consensus 1133 gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLD 1207 (1288)
.|++||+.++... ..+ .+++.++++.+++.++. +..+.+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999875210 122 34566777777776554 3445689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhcCCCcHHHH
Q 000777 1208 EATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLINIPDGFYAS 1277 (1288)
Q Consensus 1208 EaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1277 (1288)
||||+||+.+...+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++++++...|.+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 227 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHH
Confidence 9999999999999999998874 3789999999999875 59999999999999999999999875544443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=401.92 Aligned_cols=219 Identities=30% Similarity=0.480 Sum_probs=190.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 3689999999999999999999999999999999999999999999999999877653 6789
Q ss_pred EEEccCCCCch-hhHHHHHhcCCCC-CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+||+|++.+|. .|++||+.|+... ..+ ++++.++++..++.++ ......+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999999995 7999999986321 122 3345666666665544 33456789999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++++++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 6899999999998855 99999999999999999999998876
Q ss_pred cHHH
Q 000777 1273 GFYA 1276 (1288)
Q Consensus 1273 g~y~ 1276 (1288)
..|.
T Consensus 228 ~~~~ 231 (353)
T TIGR03265 228 TPFV 231 (353)
T ss_pred CHHH
Confidence 6553
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=390.64 Aligned_cols=214 Identities=31% Similarity=0.551 Sum_probs=187.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 23699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--CCchhhHHHHHhcCCCC-CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~--~Lf~gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
+||||+| .+|..|++||+.++... ..+ ++++.++++.+++.++..+. ...||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP-----------PYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999998 68889999999875211 122 34567777777776554333 347999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhh
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999875 4789999999999985 59999999999999999987653
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=399.95 Aligned_cols=217 Identities=30% Similarity=0.544 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 589999999996 34699999999999999999999999999999999999999999999999999876643 5789
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
+||+|++.+|. .||+|||.|+... .+. +++.++++.. |+.......+.+|||||||||||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~-----------gl~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-----------DLAGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 99999999995 5999999997431 222 2233333333 4444455667899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998864 6899999999999865 99999999999999999999988766
Q ss_pred chH
Q 000777 613 GAY 615 (1288)
Q Consensus 613 ~~~ 615 (1288)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 544
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=392.63 Aligned_cols=221 Identities=32% Similarity=0.590 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCC----CHHH
Q 000777 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKW 1116 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 1116 (1288)
|+++||+++|++.. .+++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 13699999999999999999999999999999999999999999999999999653 3467
Q ss_pred HhcceEEEccCC--CCchhhHHHHHhcCCCC-CCCHHHHHHHHHHhchhHHHHhhhccccc-cccCCCCCCChhHHHHHH
Q 000777 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQGYDT-MVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1117 lR~~i~~V~Qd~--~Lf~gTIreNl~~g~~~-~~sd~ei~~al~~a~l~~~i~~lp~Gldt-~vge~G~~LSgGQrQrla 1192 (1288)
+|++|+||||+| .+|..|++||+.++... ..+.++..+. +.+.+..+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 68889999999876311 2233333221 11222222 4543 344667899999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||||++|++|+|++.|+++++++
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 3789999999999985 599999999999999999999887
Q ss_pred C
Q 000777 1270 I 1270 (1288)
Q Consensus 1270 ~ 1270 (1288)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 5
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=386.36 Aligned_cols=224 Identities=31% Similarity=0.526 Sum_probs=192.6
Q ss_pred CccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--C
Q 000777 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--L 1112 (1288)
Q Consensus 1040 ~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i 1112 (1288)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 369999999999999999999999999999999999986 589999999999853 4
Q ss_pred CHHHHhcceEEEccCCCCchhhHHHHHhcCCC--CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChh
Q 000777 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186 (1288)
Q Consensus 1113 ~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1186 (1288)
+...+|++++|+||++.+|..|++||+.++.. ...+ +++++++++.+++.+.+. ...++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56778999999999999999999999986421 1122 245677777777654332 2345667789999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1265 (1288)
||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred hhhcCCCc
Q 000777 1266 NLINIPDG 1273 (1288)
Q Consensus 1266 eLl~~~~g 1273 (1288)
++...+..
T Consensus 241 ~~~~~~~~ 248 (260)
T PRK10744 241 TIFTKPAK 248 (260)
T ss_pred HHHhCCCc
Confidence 99875333
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=400.95 Aligned_cols=221 Identities=30% Similarity=0.497 Sum_probs=190.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4689999999999999999999999999999999999999999999999999876654 5689
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+||||++.+|. .||+|||.|+... .+..+.. ..+.+.++.+ |++......+.+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 6999999987432 1222211 1233445555 66666777888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchH
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1288)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++...|
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999998764 6899999999999865 99999999999999999999998765444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=393.45 Aligned_cols=218 Identities=27% Similarity=0.512 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccC----CCHHH
Q 000777 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKW 1116 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~ 1116 (1288)
|+++||+|+|+... .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--CCchhhHHHHHhcCCCC-CCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1117 lR~~i~~V~Qd~--~Lf~gTIreNl~~g~~~-~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
+|++++||+|+| .+|..|+.||+.++... ..+.+ ++.++++.+++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 899999999998 79999999999876311 12333 3445555555531 1123556789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
|++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 4789999999999885 5999999999999999999998
Q ss_pred hcC
Q 000777 1268 INI 1270 (1288)
Q Consensus 1268 l~~ 1270 (1288)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=388.04 Aligned_cols=224 Identities=34% Similarity=0.504 Sum_probs=192.8
Q ss_pred CccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccC--C
Q 000777 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQK--L 1112 (1288)
Q Consensus 1040 ~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 1112 (1288)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 3699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEccCCCCchhhHHHHHhcCCC-CC------CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCCh
Q 000777 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD------ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1113 ~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1185 (1288)
+...+|++++|+||+|.+|..|++||+.++.. .. ..++++.++++..++.+++. ...+..+..|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45678999999999999998999999986421 01 11345677777777765432 223456778999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~ 1264 (1288)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999965 999999999999999999
Q ss_pred hhhhcCCCc
Q 000777 1265 ENLINIPDG 1273 (1288)
Q Consensus 1265 ~eLl~~~~g 1273 (1288)
++++..+..
T Consensus 247 ~~~~~~~~~ 255 (267)
T PRK14235 247 EKMFTNPDD 255 (267)
T ss_pred HHHHhCCCC
Confidence 999865443
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=383.11 Aligned_cols=214 Identities=34% Similarity=0.522 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 369999999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEccCCCCch-hhHHHHHhcCCCC-CC----C----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKGG-DA----T----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~~-~~----s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
||||+|.+|. .|++||+.++... .. + ++++.++++..++.++ ......+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHH
Confidence 9999999885 6999999875210 11 1 2234455555555433 33445689999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998765 99999999999999999999986
Q ss_pred CCC
Q 000777 1270 IPD 1272 (1288)
Q Consensus 1270 ~~~ 1272 (1288)
.+.
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 533
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=381.35 Aligned_cols=210 Identities=38% Similarity=0.615 Sum_probs=178.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCC-----CCCCcEEEECCeeCCCCC--HH
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLIDGINLKEFQ--LQ 456 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~ 456 (1288)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 46999999999999999999999999999999999999 999999999999987766 55
Q ss_pred HHhcceEEEcCCCCCCchhHHHHHhcCCCCC---C----HHHHHHHHHHcCHHHHHHhCCCCccccccCC--CCCCChHH
Q 000777 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---T----TEEIRVATELANAAKFIDKLPQGIDTLVGEH--GTQLSGGQ 527 (1288)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGq 527 (1288)
.++++++|++|++.+|..|++||+.++.... . ++++.+++ +.+ |++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEAL---------RKA--ALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHH---------HHc--CCChHHhccCCcccCCHHH
Confidence 6778999999999999889999998753211 1 11222333 333 343333333 57999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhH
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1288)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999999999998656899999999999875 99999999999999998765
Q ss_pred H
Q 000777 607 L 607 (1288)
Q Consensus 607 l 607 (1288)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 3
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=383.58 Aligned_cols=214 Identities=37% Similarity=0.576 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC---HHHHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR~ 1119 (1288)
++++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 146999999999999999999999999999999999999999999999999998776 466888
Q ss_pred ceEEEccCCCCch-hhHHHHHhcCCCC-------------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCCh
Q 000777 1120 QMGLVSQEPVLFN-DTIRANIAYGKGG-------------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~-gTIreNl~~g~~~-------------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1185 (1288)
+++|+||++.+|. .|++||+.++... ...++++.++++..++.+ .....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 9999999998886 7999999764210 111234445555554433 34456678999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G 1262 (1288)
|||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3789999999999997 59999999999999999
Q ss_pred Chhhhhc
Q 000777 1263 KHENLIN 1269 (1288)
Q Consensus 1263 t~~eLl~ 1269 (1288)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9999743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=378.06 Aligned_cols=212 Identities=27% Similarity=0.452 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++. .+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.++... ...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999642 24699999999999999999999999999999999999999999999999998764 366788999
Q ss_pred EEccCCCCc-hhhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLF-NDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf-~gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|++|++.+| ..|++||+.+... ...+ ++++.++++..++.+.. .....+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHH
Confidence 999999998 6799999976311 0112 23455566655554332 23345799999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998777999999999999865 999999999999999999876
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=398.79 Aligned_cols=218 Identities=33% Similarity=0.520 Sum_probs=189.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++...+. .|++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 889999999963 369999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCCch-hhHHHHHhcCCCC-----CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKGG-----DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~~-----~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
||||++.+|. .|++||+.++... ..+ ++++.++++..++.++.. .....||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 9999999996 5999999976321 112 235566677777655433 344689999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998764 6899999999999765 99999999999999999999998
Q ss_pred CCCcHHH
Q 000777 1270 IPDGFYA 1276 (1288)
Q Consensus 1270 ~~~g~y~ 1276 (1288)
++...|.
T Consensus 227 ~p~~~~~ 233 (353)
T PRK10851 227 EPATRFV 233 (353)
T ss_pred CccchHH
Confidence 7655553
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=386.26 Aligned_cols=227 Identities=30% Similarity=0.419 Sum_probs=191.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeecc--CCCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQ--KLQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~i~~ 1114 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3699999999999999999999999999999999999987 4999999999997 4556
Q ss_pred HHHhcceEEEccCCCCchh-hHHHHHhcCCC-CC------CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChh
Q 000777 1115 KWLRQQMGLVSQEPVLFND-TIRANIAYGKG-GD------ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~g-TIreNl~~g~~-~~------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1186 (1288)
..+|++++|+||++.+|.. |++||+.++.. .. ..++++.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999986421 01 11234566777776654332 2234556789999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1265 (1288)
||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777999999999999865 9999999999999999999
Q ss_pred hhhcCCCcHHHHH
Q 000777 1266 NLINIPDGFYASL 1278 (1288)
Q Consensus 1266 eLl~~~~g~y~~L 1278 (1288)
++++.+...|.+.
T Consensus 234 ~~~~~~~~~~~~~ 246 (253)
T PRK14267 234 KVFENPEHELTEK 246 (253)
T ss_pred HHHhCCCcHHHHH
Confidence 9987543344443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=383.06 Aligned_cols=218 Identities=27% Similarity=0.508 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHH-hcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-RQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 1121 (1288)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 369999999999999999999999999999999999999999999999999988776554 5789
Q ss_pred EEEccCCCCchh-hHHHHHhcCCCCC-C----------CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1122 GLVSQEPVLFND-TIRANIAYGKGGD-A----------TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~g-TIreNl~~g~~~~-~----------sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
+|+||++.+|.+ |++||+.++.... . ..++.. ..+.+.++.+ |++...+.....|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 9999998652110 0 011111 1122333333 4554556667789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
|++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999999875 67899999999999966 999999999999999999998
Q ss_pred hcC
Q 000777 1268 INI 1270 (1288)
Q Consensus 1268 l~~ 1270 (1288)
+.+
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=388.98 Aligned_cols=217 Identities=33% Similarity=0.562 Sum_probs=190.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||+++|+.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 34699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEccCC--CCchhhHHHHHhcCCCC-CCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~--~Lf~gTIreNl~~g~~~-~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
+|+||+| .+++.|++|||.++... ..+. +++.++++..++.+++... ...||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 56788999999875211 1222 3466677777776654433 357999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999988999999999999999999998764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=401.06 Aligned_cols=222 Identities=25% Similarity=0.449 Sum_probs=195.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC-chhhHHHHHhcCCCC---------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1122 GLVSQEPVL-FNDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1122 ~~V~Qd~~L-f~gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
+||||++.+ |+.|++||+.++..+ ..+++.++++++.+++.++.. ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999987 688999999876311 123456788888888876643 23457999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhc
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|+|+++|+++.+. .||||++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 4789999999999995 599999999999999999999986
Q ss_pred CCCcHHHHHH
Q 000777 1270 IPDGFYASLI 1279 (1288)
Q Consensus 1270 ~~~g~y~~L~ 1279 (1288)
. ....+++
T Consensus 229 ~--~~l~~~~ 236 (402)
T PRK09536 229 A--DTLRAAF 236 (402)
T ss_pred c--HHHHHHh
Confidence 4 3455554
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=398.76 Aligned_cols=225 Identities=34% Similarity=0.570 Sum_probs=190.1
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH---Hh
Q 000777 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1288)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 459 (1288)
|+++|++|+|+... ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 357999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cceEEEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
++|+||||++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++......+.+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999886 699999987632 122222111 123344555 66656667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCc
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1288)
|+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+..
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998854 6899999999999876 999999999999999999999876443
Q ss_pred hH
Q 000777 614 AY 615 (1288)
Q Consensus 614 ~~ 615 (1288)
.+
T Consensus 235 ~~ 236 (343)
T PRK11153 235 PL 236 (343)
T ss_pred HH
Confidence 33
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=382.15 Aligned_cols=220 Identities=31% Similarity=0.487 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCeeCCCCCHHHHh
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 459 (1288)
.|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999984 6999999999999888777788
Q ss_pred cceEEEcCCCCCCchhHHHHHhcCCCCC----C----HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000777 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDA----T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~----~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 531 (1288)
+.|+|+||++.+|..|++||+.++.... . .+++..+++..++.+++ .+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 8999999999999999999998753210 0 11222333333332221 2335667889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 532 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+|||||+++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988778899999999999865 999999999999999999998765
Q ss_pred CC
Q 000777 611 PE 612 (1288)
Q Consensus 611 ~~ 612 (1288)
+.
T Consensus 232 ~~ 233 (246)
T PRK14269 232 PK 233 (246)
T ss_pred CC
Confidence 33
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=399.34 Aligned_cols=212 Identities=32% Similarity=0.543 Sum_probs=180.9
Q ss_pred CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH----hcceEEEcCCCCCCc
Q 000777 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT 473 (1288)
Q Consensus 398 ~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~ 473 (1288)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ |++|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3569999999999999999999999999999999999999999999999999999888777 789999999999996
Q ss_pred -hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 000777 474 -GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1288)
Q Consensus 474 -~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpt 550 (1288)
.||+|||.++.+. .+.++..+ .+.+.++.+ |++...++.+.+|||||||||+|||||+.+|+||||||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5999999986432 12211111 112233333 5555566777899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchHH
Q 000777 551 SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1288)
Q Consensus 551 s~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1288)
|+||+.+++.+++.+.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 99999999999999988753 6899999999998765 999999999999999999999887655554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=394.40 Aligned_cols=227 Identities=25% Similarity=0.394 Sum_probs=190.8
Q ss_pred cEEEEEEEEECCCCC----------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccC
Q 000777 1042 EIELHHVSFKYPSRP----------DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~----------~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1111 (1288)
-|+++||+++|+... ..++++||||+|++||++||||+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhcceEEEccCC--CCc-hhhHHHHHhcCC---CCCCCHHH----HHHHHHHhchhHHHHhhhccccccccC
Q 000777 1112 LQLK---WLRQQMGLVSQEP--VLF-NDTIRANIAYGK---GGDATEAE----IQAASEMANAHKFICSLQQGYDTMVGE 1178 (1288)
Q Consensus 1112 i~~~---~lR~~i~~V~Qd~--~Lf-~gTIreNl~~g~---~~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge 1178 (1288)
++.. .+|++|+||+|+| .++ ..||.+|+.++. ....+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 8654 4678999999999 466 589999986421 01233333 344555555521 12345
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeC
Q 000777 1179 RGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKN 1255 (1288)
Q Consensus 1179 ~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~ 1255 (1288)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5678999999999999999999999999999999999999999999998754 7899999999999976 999999999
Q ss_pred CEEEEecChhhhhcCCCcHHHHH
Q 000777 1256 GVIVEKGKHENLINIPDGFYASL 1278 (1288)
Q Consensus 1256 G~Ive~Gt~~eLl~~~~g~y~~L 1278 (1288)
|+|+|.|+++++++++...|.+.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHH
Confidence 99999999999998766677663
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=380.51 Aligned_cols=221 Identities=27% Similarity=0.467 Sum_probs=197.1
Q ss_pred CCCccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHH
Q 000777 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1288)
Q Consensus 1038 ~~~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l 1117 (1288)
...+.|+++||++.. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 345679999999952 3599999999999999999999999999999999999999999999998
Q ss_pred hcceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHH
Q 000777 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197 (1288)
Q Consensus 1118 R~~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARAL 1197 (1288)
+|+|+||++.+|++|++||+.++. ...+.++.++++.+++.+.+..+|.++++.+++.+..||||||||++|||||
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV 174 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH
Confidence 399999999999999999998752 2344566777888899999999999999999999999999999999999999
Q ss_pred cCCCCEEEEeccCCCCCHHHHHHHHHHH-HHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcCCCcHHH
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDAL-DRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276 (1288)
Q Consensus 1198 lr~p~ILlLDEaTSaLD~~te~~I~~~L-~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~ 1276 (1288)
+++|++|||||||++||+++...+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|.
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 253 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFS 253 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHH
Confidence 9999999999999999999999988754 555568999999999999988999999999999999999999875 44565
Q ss_pred HHH
Q 000777 1277 SLI 1279 (1288)
Q Consensus 1277 ~L~ 1279 (1288)
+.+
T Consensus 254 ~~~ 256 (282)
T cd03291 254 SKL 256 (282)
T ss_pred HHH
Confidence 544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=383.96 Aligned_cols=227 Identities=31% Similarity=0.431 Sum_probs=193.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccCCCHHH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQKLQLKW 1116 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~~~~ 1116 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999963 3699999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhcceEEEccCCCCc-hhhHHHHHhcCCC-CC------CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1117 LRQQMGLVSQEPVLF-NDTIRANIAYGKG-GD------ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1117 lR~~i~~V~Qd~~Lf-~gTIreNl~~g~~-~~------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
+|++|+|+||++.+| +.|++||+.++.. .. ..++++.++++..++.+.+.. .......+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD-------RLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh-------hhcCCcccCCHHHH
Confidence 999999999999755 6899999976421 01 113456777787777554321 22344568999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999986 5999999999999999999999
Q ss_pred hcCCCcHHHHH
Q 000777 1268 INIPDGFYASL 1278 (1288)
Q Consensus 1268 l~~~~g~y~~L 1278 (1288)
.+.+...+.+.
T Consensus 233 ~~~~~~~~~~~ 243 (250)
T PRK14247 233 FTNPRHELTEK 243 (250)
T ss_pred HcCCccHHHHH
Confidence 87654444443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=390.59 Aligned_cols=218 Identities=30% Similarity=0.524 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccC----CCHHH
Q 000777 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKW 1116 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~ 1116 (1288)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999997421 1469999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcceEEEccCC--CCchhhHHHHHhcCCC-CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1117 lR~~i~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
+|++|+||||+| .+|+.|++||+.++.. ...+.+ .+.++++.+++.+. ........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHHH
Confidence 888999999998 6889999999987631 112333 34455555555321 123456789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999864 99999999999999999999
Q ss_pred hhcC
Q 000777 1267 LINI 1270 (1288)
Q Consensus 1267 Ll~~ 1270 (1288)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=377.54 Aligned_cols=204 Identities=32% Similarity=0.515 Sum_probs=175.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1119 (1288)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 2369999999999999999999999999999999999999999999999999977653 34788
Q ss_pred ceEEEccCCCCch-hhHHHHHhcCCC-----CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-----GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~-gTIreNl~~g~~-----~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
+++|+||++.+|. .|++||+.++.. ....++++.++++..++.++... ...+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 9999999999886 599999986411 01124566777777777655433 335799999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~I 1258 (1288)
||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999975 999999999985
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=386.99 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++||+++|+....+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999632224699999999999999999999999999999999999999999999999999877777888899
Q ss_pred EEEcCCCC--CCchhHHHHHhcCCCC--CCHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
+||+|+|. ++..||+|||.++... .+.+ ++.++++.. |++........+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV-----------GMQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 5677999999987432 2222 233333333 444445556679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998864 6899999999999877999999999999999999988764
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=399.54 Aligned_cols=219 Identities=35% Similarity=0.540 Sum_probs=191.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 599999998632 1122 235667777777776655443 579999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998764 789999999999875 499999999999999999999998876
Q ss_pred cHHH
Q 000777 1273 GFYA 1276 (1288)
Q Consensus 1273 g~y~ 1276 (1288)
..|.
T Consensus 238 ~~~~ 241 (375)
T PRK09452 238 NLFV 241 (375)
T ss_pred cHHH
Confidence 5553
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=388.09 Aligned_cols=220 Identities=33% Similarity=0.504 Sum_probs=185.6
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHH----hc
Q 000777 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL----RQ 1119 (1288)
Q Consensus 1044 ~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~ 1119 (1288)
.++||+++|.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46678888753 368999999999999999999999999999999999999999999999999987765443 46
Q ss_pred ceEEEccCCCCc-hhhHHHHHhcCCC-CCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1120 QMGLVSQEPVLF-NDTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf-~gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
+++|+||++.+| +.|++||+.++.. ... .++++.++++..++.+++.. ...+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHH
Confidence 899999999988 4699999976311 011 23456667777776655433 335799999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998753 7899999999999865 999999999999999999999876
Q ss_pred CCcHHHH
Q 000777 1271 PDGFYAS 1277 (1288)
Q Consensus 1271 ~~g~y~~ 1277 (1288)
+...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 5555554
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=382.44 Aligned_cols=213 Identities=36% Similarity=0.554 Sum_probs=181.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1119 (1288)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999987653 45788
Q ss_pred ceEEEccCCCCch-hhHHHHHhcCCCC-------------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCCh
Q 000777 1120 QMGLVSQEPVLFN-DTIRANIAYGKGG-------------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~-gTIreNl~~g~~~-------------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1185 (1288)
+++|+||++.+|. .|++||+.++... ...++++.++++..++.+ .......+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 9999999998886 6999999864211 011234455555555433 33455678999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999865 9999999999999999
Q ss_pred Chhhhh
Q 000777 1263 KHENLI 1268 (1288)
Q Consensus 1263 t~~eLl 1268 (1288)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999974
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=381.43 Aligned_cols=222 Identities=28% Similarity=0.508 Sum_probs=187.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH-hcce
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 462 (1288)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46899999996 2469999999999999999999999999999999999999999999999999987776543 5689
Q ss_pred EEEcCCCCCCch-hHHHHHhcCCCCCCHHHH-------HHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEI-------RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
+|+||++.+|.. |++||+.++........+ ........+.+.++.+ |++...+....+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999875 999999876432110000 0001111234556666 777777888899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999999876 57899999999999876 999999999999999999988654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=397.82 Aligned_cols=218 Identities=32% Similarity=0.550 Sum_probs=187.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999963 4699999999999999999999999999999999999999999999999999876654 468
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
|+||||++.+|. .||+|||.|+... .+. +++.++++..+ ++......+.+|||||||||+||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-----------LEEFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHHHHH
Confidence 999999999995 5999999987431 122 22333444444 44444555679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1288)
|||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+++
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998864 6899999999999865 9999999999999999999999876
Q ss_pred CchH
Q 000777 612 EGAY 615 (1288)
Q Consensus 612 ~~~~ 615 (1288)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 5444
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=387.14 Aligned_cols=218 Identities=29% Similarity=0.503 Sum_probs=190.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743234699999999999999999999999999999999999999999999999999887778889999
Q ss_pred EEEccCC--CCchhhHHHHHhcCCC-CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
+|+||+| .++..|+.|||.++.. ...+++ ++.++++.+++.++.. .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4778999999986421 122333 3456666666655432 34568999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999988999999999999999999999864
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=379.45 Aligned_cols=217 Identities=33% Similarity=0.518 Sum_probs=184.8
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH---HHh
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1118 (1288)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 12699999999999999999999999999999999999999999999999999876543 357
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
++++|+||++.+|. .|++||+.++.. ...+ .+++.++++..++.+. ......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHHHH
Confidence 89999999999996 699999976411 0112 3345566666655443 33345689999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999999876
Q ss_pred C
Q 000777 1270 I 1270 (1288)
Q Consensus 1270 ~ 1270 (1288)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=388.41 Aligned_cols=216 Identities=27% Similarity=0.493 Sum_probs=186.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeecc--CCCHHHHhc
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~lR~ 1119 (1288)
-|+++||+++|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 3899999999962 246999999999999999999999999999999999999999999999999984 344667899
Q ss_pred ceEEEccCC--CCchhhHHHHHhcCCC-CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1120 QMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1120 ~i~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
+++|+||+| .+|+.|++||+.++.. ...+. +.+.++++..++.++ ......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHH
Confidence 999999998 5789999999986421 11232 345556666666543 34556789999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||||++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998764 789999999999997 599999999999999999999886
Q ss_pred C
Q 000777 1270 I 1270 (1288)
Q Consensus 1270 ~ 1270 (1288)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=381.47 Aligned_cols=222 Identities=32% Similarity=0.517 Sum_probs=187.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999741 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||+|.+|. .|++||+.++.. ...+ ++++.++++..++.+ +......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999885 799999976411 0112 233445555554432 012345567899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCc
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDG 1273 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g 1273 (1288)
++++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 229 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAN 229 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCC
Confidence 9999999999999999999999999999998753 7899999999998755 999999999999999999999865333
Q ss_pred HH
Q 000777 1274 FY 1275 (1288)
Q Consensus 1274 ~y 1275 (1288)
.|
T Consensus 230 ~~ 231 (242)
T cd03295 230 DF 231 (242)
T ss_pred hH
Confidence 33
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=397.36 Aligned_cols=220 Identities=30% Similarity=0.494 Sum_probs=190.5
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC--ceEEECCeeccCCCHHHHh
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA--GHITLDGVEIQKLQLKWLR 1118 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~~~~lR 1118 (1288)
+.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 56999999999963 369999999999999999999999999999999999999999 999999999987665 46
Q ss_pred cceEEEccCCCCchh-hHHHHHhcCCC-CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1119 QQMGLVSQEPVLFND-TIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~g-TIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
++|+||+|++.+|.. |++|||.|+.. ...+. +++.++++..++.++.. ....+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHHH
Confidence 789999999999965 99999987531 11232 34566677776665543 334589999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC---CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK---NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~---~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|||||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998754 6899999999999865 9999999999999999999999
Q ss_pred cCCCcHHH
Q 000777 1269 NIPDGFYA 1276 (1288)
Q Consensus 1269 ~~~~g~y~ 1276 (1288)
+++...|-
T Consensus 228 ~~p~~~~~ 235 (362)
T TIGR03258 228 DAPADGFA 235 (362)
T ss_pred hCcCcHHH
Confidence 88665553
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=376.49 Aligned_cols=217 Identities=26% Similarity=0.416 Sum_probs=180.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHH-hcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-RQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 1121 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 369999999999999999999999999999999999999999999999999988776554 6789
Q ss_pred EEEccCCCCchh-hHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1122 GLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~g-TIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
+|+||++.+|.+ |++||+.++.. .....+.++. +.+.+..++ +++.........||||||||++||||++++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 999999999986 99999987521 1111111111 111222221 133334456678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999875 57899999999999865 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=377.88 Aligned_cols=221 Identities=34% Similarity=0.640 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCCCCchhHHHHHhcCCCCCC--HHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 463 GLVSQEPVLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+|++|++.+|..|++||+.++..... .+++ .+.++.+ |++ ......+.+||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDV---------EYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHH---------HHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987532211 1122 2334444 443 24456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchHH
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1288)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999998753 6899999999999876 999999999999999999999876444444
Q ss_pred H
Q 000777 617 Q 617 (1288)
Q Consensus 617 ~ 617 (1288)
.
T Consensus 229 ~ 229 (241)
T PRK14250 229 K 229 (241)
T ss_pred H
Confidence 3
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=383.13 Aligned_cols=224 Identities=30% Similarity=0.477 Sum_probs=189.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccCC--CH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQKL--QL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1114 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
..+|+.++|+||++.+|..|++||+.++.. ...+. +++.++++.+++.+.+. .........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHHH
Confidence 567889999999999999999999986421 11222 34566777666643321 2233456789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|++|||||+.+|+||||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 9999999999999999999998
Q ss_pred cCCCcHH
Q 000777 1269 NIPDGFY 1275 (1288)
Q Consensus 1269 ~~~~g~y 1275 (1288)
.++...|
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 7644444
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=375.17 Aligned_cols=204 Identities=37% Similarity=0.573 Sum_probs=174.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 478999999963 36999999999999999999999999999999999999999999999999997654 3578899
Q ss_pred EEccCCCCch-hhHHHHHhcCCCC-CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|. .|++||+.++... ..+ ++++.++++..++.++. .....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-----------NRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHHHH
Confidence 9999998885 6999999864210 112 23455566666554443 33446899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
|+++|++|||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 7899999999998865 9999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=384.78 Aligned_cols=222 Identities=29% Similarity=0.473 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1114 (1288)
-|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4999999999963 369999999999999999999999999999999999865 789999999999864 345
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC--CC----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG--GD----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~--~~----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|++|++||+.++.. .. ..++.+.++++..++.+.+. ...+..+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 577899999999999999999999986411 11 11234566666666543221 223456678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998865 999999999999999999999
Q ss_pred hcCCCc
Q 000777 1268 INIPDG 1273 (1288)
Q Consensus 1268 l~~~~g 1273 (1288)
..++..
T Consensus 251 ~~~~~~ 256 (268)
T PRK14248 251 FTSPKQ 256 (268)
T ss_pred HhCCCC
Confidence 876443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=383.39 Aligned_cols=225 Identities=29% Similarity=0.464 Sum_probs=190.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--P---DAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~~ 1114 (1288)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|++||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 369999999999999999999999999999999999997 3 58999999999863 455
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CC-CCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD-ATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~-~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|..|++||+.++.. .. .++ +++.++++..++.+++. ......+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999986521 11 122 23455666666654432 223456678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999865 999999999999999999999
Q ss_pred hcCCCcHHH
Q 000777 1268 INIPDGFYA 1276 (1288)
Q Consensus 1268 l~~~~g~y~ 1276 (1288)
++++...|.
T Consensus 242 ~~~~~~~~~ 250 (259)
T PRK14274 242 FSNPDDQRT 250 (259)
T ss_pred hhCCCCHHH
Confidence 876444443
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=387.44 Aligned_cols=220 Identities=33% Similarity=0.586 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC--HHHHh
Q 000777 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIR 459 (1288)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r 459 (1288)
|+++||+|+|+... ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999997643 35678
Q ss_pred cceEEEcCCC--CCCchhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCcc--ccccCCCCCCChHHHHHHHH
Q 000777 460 KKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 460 ~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~~~~~g~~LSgGqkqri~l 533 (1288)
++||||||+| .+|+.|++|||.++.. ..+.++..+. +.+.++.+ |+. +.....+.+||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 5788999999998632 1233222221 12233443 554 45677788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998854 6899999999999865 999999999999999999998654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=388.16 Aligned_cols=220 Identities=28% Similarity=0.535 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC----CCHHH
Q 000777 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1288)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 457 (1288)
|+++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 1369999999999999999999999999999999999999999999999999863 33556
Q ss_pred HhcceEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000777 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 532 (1288)
+|+.|+||+|+| .+|..|+.||+.|+... .+.++... .+.+.++.+ |++ ......+.+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 78889999999987432 22222211 112333444 443 3456777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 533 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999999988754 7899999999999865 999999999999999999998754
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=389.08 Aligned_cols=218 Identities=24% Similarity=0.465 Sum_probs=184.4
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccC---------
Q 000777 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK--------- 1111 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--------- 1111 (1288)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997431 1369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhcceEEEccCC--CCchhhHHHHHhcCCCC-CCCH----HHHHHHHHHhchhHHHHhhh
Q 000777 1112 ---------------LQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DATE----AEIQAASEMANAHKFICSLQ 1169 (1288)
Q Consensus 1112 ---------------i~~~~lR~~i~~V~Qd~--~Lf~gTIreNl~~g~~~-~~sd----~ei~~al~~a~l~~~i~~lp 1169 (1288)
.+...+|++|+||||+| .+|..|++|||.++... ..+. +++.++++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 13467889999999986 68889999999876321 2333 33455566555531
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh-hc
Q 000777 1170 QGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIK-NA 1247 (1288)
Q Consensus 1170 ~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~-~~ 1247 (1288)
........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .|
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 12345567899999999999999999999999999999999999999999998875 4789999999999875 59
Q ss_pred CEEEEEeCCEEEEecChhhhhcC
Q 000777 1248 DMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1248 DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||++|++|++++.|+++++.+.
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998865
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=392.64 Aligned_cols=229 Identities=26% Similarity=0.391 Sum_probs=189.0
Q ss_pred EEEEEEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC----CCCceEEECCeeccCCCHHHH
Q 000777 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD----PDAGHITLDGVEIQKLQLKWL 1117 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~~~~l 1117 (1288)
++++||++.|+.... .++|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|++||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974321 369999999999999999999999999999999999997 489999999999998887665
Q ss_pred hc----ceEEEccCCC--Cch-hhHH----HHHhcCC--CCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCC
Q 000777 1118 RQ----QMGLVSQEPV--LFN-DTIR----ANIAYGK--GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1118 R~----~i~~V~Qd~~--Lf~-gTIr----eNl~~g~--~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1184 (1288)
|+ +|+||||+|. ++. -|+. +|+.... ......+++.++++.+++.+.. ..++..+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 43 6999999994 332 3454 4543321 1111234577778888776432 12345677899
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEe
Q 000777 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEK 1261 (1288)
Q Consensus 1185 gGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~ 1261 (1288)
||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+. .||||+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999995 5999999999999999
Q ss_pred cChhhhhcCCCcHHHHHH
Q 000777 1262 GKHENLINIPDGFYASLI 1279 (1288)
Q Consensus 1262 Gt~~eLl~~~~g~y~~L~ 1279 (1288)
|+++++++++...|.+.+
T Consensus 236 g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCHHHHhhCCCChHHHHH
Confidence 999999988777776543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=382.35 Aligned_cols=226 Identities=31% Similarity=0.481 Sum_probs=190.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1114 (1288)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 3899999999963 369999999999999999999999999999999999997 479999999999854 345
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CCC-----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDA-----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~~-----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|+.++|++|++.+|+.|++||+.++.. ... .++++.++++..++++.. + ...+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 667889999999999999999999986421 011 123455666666664321 1 123455678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999999
Q ss_pred hcCCCcHHHH
Q 000777 1268 INIPDGFYAS 1277 (1288)
Q Consensus 1268 l~~~~g~y~~ 1277 (1288)
...+...|.+
T Consensus 234 ~~~~~~~~~~ 243 (251)
T PRK14251 234 FIAPKKQITS 243 (251)
T ss_pred HhCCCCHHHH
Confidence 8765444443
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=395.02 Aligned_cols=221 Identities=32% Similarity=0.536 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+. .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 469999999999999999999999999999999999999999999999999976554 35689
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCC------CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++......+.+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 5999999987431 12221111 122333444 4555556677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998864 5799999999999876 99999999999999999999988765
Q ss_pred chH
Q 000777 613 GAY 615 (1288)
Q Consensus 613 ~~~ 615 (1288)
..|
T Consensus 230 ~~~ 232 (353)
T PRK10851 230 TRF 232 (353)
T ss_pred chH
Confidence 444
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=383.15 Aligned_cols=224 Identities=31% Similarity=0.516 Sum_probs=190.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccCCC--HH
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQKLQ--LK 1115 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i~--~~ 1115 (1288)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 369999999999999999999999999999999999986 47999999999987543 34
Q ss_pred HHhcceEEEccCCCCchhhHHHHHhcCC--CCC-----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGK--GGD-----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~Lf~gTIreNl~~g~--~~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
.+|++++|+||++.+|.+|++||+.++. ... ..++++.++++..++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 6789999999999999999999998641 110 12345667777777654322 234456678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 999999999999999999999
Q ss_pred hcCCCcHHH
Q 000777 1268 INIPDGFYA 1276 (1288)
Q Consensus 1268 l~~~~g~y~ 1276 (1288)
++.+...|.
T Consensus 236 ~~~~~~~~~ 244 (251)
T PRK14244 236 FKNPQSSKT 244 (251)
T ss_pred hcCCCChHH
Confidence 977555443
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=376.28 Aligned_cols=213 Identities=29% Similarity=0.517 Sum_probs=182.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 36999999999999999999999999999999999999999999999999998766543 46899
Q ss_pred EEccCCCC-chhhHHHHHhcCCC-CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVL-FNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~L-f~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+ +..|++||+.++.. ...+.+ ++.+.++.. |++........+||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL-----------GLAERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHH
Confidence 99999987 56899999976421 112222 233333333 44444556677899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
++++|+||||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999999875 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=383.03 Aligned_cols=222 Identities=30% Similarity=0.471 Sum_probs=192.0
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CC
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQ 1113 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1113 (1288)
..|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999997 589999999999864 34
Q ss_pred HHHHhcceEEEccCCCCchhhHHHHHhcCCC--CCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhH
Q 000777 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKG--GDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~--~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1187 (1288)
...+|+.++||||++.+|..|++||+.++.. ... .++++.++++..++.+++. ...+..+..|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 6678999999999999999999999986421 111 2345666777777765442 33456678999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhh
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
|||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999865 99999999999999999999
Q ss_pred hhcCCC
Q 000777 1267 LINIPD 1272 (1288)
Q Consensus 1267 Ll~~~~ 1272 (1288)
+.+.+.
T Consensus 249 ~~~~~~ 254 (267)
T PRK14237 249 IFTNPK 254 (267)
T ss_pred HhcCCC
Confidence 987544
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=380.91 Aligned_cols=219 Identities=33% Similarity=0.502 Sum_probs=185.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC---------
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ--------- 1113 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------- 1113 (1288)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 36999999999999999999999999999999999999999999999999987553
Q ss_pred ----HHHHhcceEEEccCCCCch-hhHHHHHhcCCC--CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCC
Q 000777 1114 ----LKWLRQQMGLVSQEPVLFN-DTIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQ 1182 (1288)
Q Consensus 1114 ----~~~lR~~i~~V~Qd~~Lf~-gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~ 1182 (1288)
...+|++++|++|++.+|. .|++||+.++.. .... ++++.++++..++.++ .......
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 2467889999999998885 799999986411 0111 2345555555555443 3445578
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 000777 1183 LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIV 1259 (1288)
Q Consensus 1183 LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv 1259 (1288)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999865 9999999999999
Q ss_pred EecChhhhhcCCCcHH
Q 000777 1260 EKGKHENLINIPDGFY 1275 (1288)
Q Consensus 1260 e~Gt~~eLl~~~~g~y 1275 (1288)
+.|+++++.+.+...|
T Consensus 227 ~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 227 EQGKPDEIFRQPKEER 242 (252)
T ss_pred EeCCHHHHhcCCCcHH
Confidence 9999999987644333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=380.20 Aligned_cols=225 Identities=34% Similarity=0.520 Sum_probs=191.4
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccC--CC
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQK--LQ 1113 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 1113 (1288)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 3699999999999999999999999999999999999863 69999999999874 45
Q ss_pred HHHHhcceEEEccCCCCchhhHHHHHhcCCC-CC-----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhH
Q 000777 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD-----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1187 (1288)
...+|++++|+||++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+. ......+..|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678999999999999999999999986521 11 12345566666666654332 22345567899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhh
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
|||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778899999999998865 99999999999999999999
Q ss_pred hhcCCCcHH
Q 000777 1267 LINIPDGFY 1275 (1288)
Q Consensus 1267 Ll~~~~g~y 1275 (1288)
+...+...+
T Consensus 232 ~~~~~~~~~ 240 (250)
T PRK14240 232 LFTNPKDKR 240 (250)
T ss_pred HHhCCCChH
Confidence 987644444
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=383.17 Aligned_cols=225 Identities=32% Similarity=0.490 Sum_probs=191.6
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CC
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQ 1113 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1113 (1288)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 369999999999999999999999999999999999987 689999999999863 56
Q ss_pred HHHHhcceEEEccCCCCchhhHHHHHhcCCCC-CC---CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DA---TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-~~---sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
...+|++++||||++.+|..|++||+.++... .. .++++.++++.+++.+.+ +.........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 67789999999999999999999999875211 11 134556667776664332 23345566789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeC-----------CE
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKN-----------GV 1257 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-----------G~ 1257 (1288)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999998777899999999998865 999999996 77
Q ss_pred EEEecChhhhhcCCCcHH
Q 000777 1258 IVEKGKHENLINIPDGFY 1275 (1288)
Q Consensus 1258 Ive~Gt~~eLl~~~~g~y 1275 (1288)
++|.|+++++.+.+...|
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 242 LVEFNETKKIFNSPKQKA 259 (269)
T ss_pred EEEeCCHHHHHhCcCChH
Confidence 999999999987644444
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=368.56 Aligned_cols=200 Identities=37% Similarity=0.567 Sum_probs=181.9
Q ss_pred EEEEEEEEECCCCCC--cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcc
Q 000777 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1120 (1288)
|+++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999974311 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
|+|+||+|.+|++|++||+.++. ..++++.+++++.+++.+++..+|.|+++.+++.+..||||||||++|||||+.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998852 3456678888999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHH-HHHHHc-CCceEEEEecCchhhhhcCEEEEEeCCE
Q 000777 1201 PKILLLDEATSALDAESERVVQD-ALDRVM-KNRTTVVVAHRLSTIKNADMIAVVKNGV 1257 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~-~L~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1257 (1288)
|+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||+|++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999988877 466553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=376.79 Aligned_cols=211 Identities=29% Similarity=0.446 Sum_probs=179.1
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH---H
Q 000777 1042 EIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---L 1117 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l 1117 (1288)
-++++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997421 146999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-cceEEEccCCCCchh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHH
Q 000777 1118 R-QQMGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR 1190 (1288)
Q Consensus 1118 R-~~i~~V~Qd~~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQr 1190 (1288)
| +.++|+||++.+|.. |++||+.++.. .... ++++.++++..++.++ ......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3 689999999998865 99999976310 0111 2345566666555433 344557899999999
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 000777 1191 VAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGK 1263 (1288)
Q Consensus 1191 laiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt 1263 (1288)
++||||++.+|+||||||||++||+++...+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4789999999999999999999999999998775
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=398.69 Aligned_cols=219 Identities=29% Similarity=0.489 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999963 369999999999999999999999999999999999999999999999999987664 35789
Q ss_pred EEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+||||++.+|. .|++||+.++.. ...+ ++++.++++..++.++. .....+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999996 599999987521 1122 23466667776665443 3334689999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 7899999999998865 99999999999999999999998765
Q ss_pred cHHH
Q 000777 1273 GFYA 1276 (1288)
Q Consensus 1273 g~y~ 1276 (1288)
..|-
T Consensus 227 ~~~~ 230 (369)
T PRK11000 227 NRFV 230 (369)
T ss_pred cHHH
Confidence 5443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=382.79 Aligned_cols=224 Identities=31% Similarity=0.496 Sum_probs=192.7
Q ss_pred CccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccC--C
Q 000777 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQK--L 1112 (1288)
Q Consensus 1040 ~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 1112 (1288)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|++||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 446999999999963 3699999999999999999999999999999999999984 89999999999864 3
Q ss_pred CHHHHhcceEEEccCCCCchhhHHHHHhcCCC-CCC-----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChh
Q 000777 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDA-----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186 (1288)
Q Consensus 1113 ~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~~-----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1186 (1288)
+...+|++++|+||++.+|++|++||+.++.. ... .++++.++++.+++.+.+. +..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678999999999999999999999986421 111 1234677777777765443 2345667899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1265 (1288)
||||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 9999999999999999999
Q ss_pred hhhcCCCc
Q 000777 1266 NLINIPDG 1273 (1288)
Q Consensus 1266 eLl~~~~g 1273 (1288)
++.+.+..
T Consensus 253 ~~~~~~~~ 260 (272)
T PRK14236 253 TLFTSPAK 260 (272)
T ss_pred HHhcCCCc
Confidence 99875433
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=389.61 Aligned_cols=228 Identities=30% Similarity=0.453 Sum_probs=190.5
Q ss_pred cEEEEEEEEECCCCC-------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH
Q 000777 1042 EIELHHVSFKYPSRP-------DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~-------~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1114 (1288)
-|+++||++.|+... ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 389999999997321 2469999999999999999999999999999999999999999999999999988764
Q ss_pred ---HHHhcceEEEccCCC--Cch-hhHHHHHhcCC--CCCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCC
Q 000777 1115 ---KWLRQQMGLVSQEPV--LFN-DTIRANIAYGK--GGDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQ 1182 (1288)
Q Consensus 1115 ---~~lR~~i~~V~Qd~~--Lf~-gTIreNl~~g~--~~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~ 1182 (1288)
..+|++|+||||+|. |+. -|+.+|+.... .... ..+++.++++.+++.+ ..++ .....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~----~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYD----RYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhc----CCCcc
Confidence 457889999999993 554 48888885210 0011 2245666777777642 1233 34568
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 000777 1183 LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIV 1259 (1288)
Q Consensus 1183 LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv 1259 (1288)
||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 9999999999999
Q ss_pred EecChhhhhcCCCcHHHHHH
Q 000777 1260 EKGKHENLINIPDGFYASLI 1279 (1288)
Q Consensus 1260 e~Gt~~eLl~~~~g~y~~L~ 1279 (1288)
|.|+++++++++...|.+.+
T Consensus 235 e~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EECCHHHHhcCCCCHHHHHH
Confidence 99999999987666676643
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=384.49 Aligned_cols=217 Identities=31% Similarity=0.594 Sum_probs=187.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++|++++|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999887878899999
Q ss_pred EEEccCC--CCchhhHHHHHhcCCC-CCCCHHH----HHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEP--VLFNDTIRANIAYGKG-GDATEAE----IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
+|+||+| .++..|++||+.++.. ...+.++ +.++++..++.++ +.....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHHH
Confidence 9999998 4567899999986421 1123332 4455555565544 3344578999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999888999999999999999999998764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=379.55 Aligned_cols=225 Identities=31% Similarity=0.463 Sum_probs=187.1
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCC--CC
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 454 (1288)
..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999963 4699999999999999999999999999999999999997 48999999998853 34
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCCC---CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 527 (1288)
...+|++|+|++|++.+|..|++|||.++.... .. +++.++++..++.+. +.......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------VKDKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh-------hHHHHhCCcccCCHHH
Confidence 456788999999999999899999999863211 11 223333333333211 1223445678999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhH
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1288)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999866 99999999999999999999
Q ss_pred HhcCCCchHH
Q 000777 607 LVEDPEGAYS 616 (1288)
Q Consensus 607 l~~~~~~~~~ 616 (1288)
+.+++...|.
T Consensus 236 ~~~~~~~~~~ 245 (254)
T PRK14273 236 LFFNPKNTKT 245 (254)
T ss_pred HHhCCCChHH
Confidence 9876554443
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=377.72 Aligned_cols=220 Identities=32% Similarity=0.524 Sum_probs=185.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCeeCCCC--CHH
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--QLQ 456 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 456 (1288)
++++||+++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 46999999999999999999999999999999999999998 99999999998753 345
Q ss_pred HHhcceEEEcCCCCCCchhHHHHHhcCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCcc----ccccCCCCCCChHHHH
Q 000777 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGID----TLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~----t~~~~~g~~LSgGqkq 529 (1288)
..++.++|+||++.+|..|++||+.++... ....+..+ .+.+.++.+ |+. ......+.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence 667899999999999999999999875321 11111111 112233333 443 4456777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999999865 9999999999999999999987
Q ss_pred cCCCc
Q 000777 609 EDPEG 613 (1288)
Q Consensus 609 ~~~~~ 613 (1288)
+.+..
T Consensus 232 ~~~~~ 236 (247)
T TIGR00972 232 TNPKE 236 (247)
T ss_pred hCCCC
Confidence 65443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=380.76 Aligned_cols=222 Identities=29% Similarity=0.453 Sum_probs=188.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCceEEECCeeccCC--CH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--P---DAGHITLDGVEIQKL--QL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i--~~ 1114 (1288)
-++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 3899999999963 369999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC--CC----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG--GD----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~--~~----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++||||++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+. +..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999985411 11 12344556677776654332 234556778999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999998865 999999999999999999999
Q ss_pred hcCCCc
Q 000777 1268 INIPDG 1273 (1288)
Q Consensus 1268 l~~~~g 1273 (1288)
.+.+..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14239 235 FMNPKH 240 (252)
T ss_pred HhCCCC
Confidence 876443
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=395.31 Aligned_cols=222 Identities=30% Similarity=0.496 Sum_probs=189.1
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC--cEEEECCeeCCCCCHHHHh
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQWIR 459 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~r 459 (1288)
+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999963 469999999999999999999999999999999999999999 999999999976655 35
Q ss_pred cceEEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
+.|+||+|++.+|. .||+|||.|+... .+..+... .+.+.++.+ |++........+|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 68999999999995 5999999987431 22222111 122334444 56556667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~ 231 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPA 231 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcC
Confidence 9999999999999999999999999999988764 5799999999999866 99999999999999999999998765
Q ss_pred chH
Q 000777 613 GAY 615 (1288)
Q Consensus 613 ~~~ 615 (1288)
..|
T Consensus 232 ~~~ 234 (362)
T TIGR03258 232 DGF 234 (362)
T ss_pred cHH
Confidence 444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=385.76 Aligned_cols=220 Identities=31% Similarity=0.558 Sum_probs=187.6
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCC----CHHH
Q 000777 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1288)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 457 (1288)
++++|++|+|+... ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996322 24699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhcceEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccc-cccCCCCCCChHHHHHHH
Q 000777 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~ 532 (1288)
+|++||||||+| .+|..|++|||.++... .+.++..+. +.+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 68888999999986322 233222221 23445555 7763 456788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 533 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
|||||+.+|+||||||||++||+.+...+.+.++++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 36899999999999865 99999999999999999998876
Q ss_pred C
Q 000777 610 D 610 (1288)
Q Consensus 610 ~ 610 (1288)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=377.95 Aligned_cols=216 Identities=35% Similarity=0.556 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876543 256899
Q ss_pred EEcCCCCCCc-hhHHHHHhcCCCCC------CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
|++|+|.+|. .|++||+.++.... ...+.. ..+.+.++.+ |++......+.+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999885 69999999764211 111111 1123344544 56555667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCC
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1288)
|+.+|++|||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 228 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCC
Confidence 9999999999999999999999999999998854 6899999999998865 9999999999999999999987653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=383.32 Aligned_cols=212 Identities=31% Similarity=0.563 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
-|+++|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..+++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999962 24699999999999999999999999999999999999999999999999999887778888899
Q ss_pred EEEcCCC--CCCchhHHHHHhcCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
+||+|+| .++..|++||+.|+... .+. +++..+++..++ .........+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-----------WDFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCChhhCCHHHHHHHHHH
Confidence 9999998 57888999999986321 222 223333344343 3334455579999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999998854 6899999999999865 999999999999999998754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=380.22 Aligned_cols=228 Identities=29% Similarity=0.482 Sum_probs=193.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccCC--CH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQKL--QL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1114 (1288)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999963 3699999999999999999999999999999999999984 899999999998653 34
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC--CC----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG--GD----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~--~~----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|..|++||+.++.. .. ..++++.++++..++.+.+. ...+....+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999986421 01 12334666777777765432 224556778999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998755 999999999999999999999
Q ss_pred hcCCCcHHHHHH
Q 000777 1268 INIPDGFYASLI 1279 (1288)
Q Consensus 1268 l~~~~g~y~~L~ 1279 (1288)
.+++...|.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14262 233 VERPKNKLTEEY 244 (250)
T ss_pred HhCCCChHHHHH
Confidence 876444455433
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=380.41 Aligned_cols=224 Identities=31% Similarity=0.477 Sum_probs=190.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc---CCC--CCceEEECCeeccCC--CH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF---YDP--DAGHITLDGVEIQKL--QL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl---~~p--~~G~I~idG~di~~i--~~ 1114 (1288)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 3699999999999999999999999999999999997 454 589999999998754 35
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CC-----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD-----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|..|++||+.++.. .. ..+++++++++..++.+++. +.....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999976421 01 12345666777666654432 234456778999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 999999999999999999999
Q ss_pred hcCCCcHH
Q 000777 1268 INIPDGFY 1275 (1288)
Q Consensus 1268 l~~~~g~y 1275 (1288)
.+++...|
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14245 233 FTNPEKEA 240 (250)
T ss_pred hcCCCChH
Confidence 87644433
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=385.54 Aligned_cols=218 Identities=27% Similarity=0.474 Sum_probs=188.8
Q ss_pred cEEEEEEEEECCCCC---CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC-HHHH
Q 000777 1042 EIELHHVSFKYPSRP---DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-LKWL 1117 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~---~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~l 1117 (1288)
-|+++||+++|++.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999997653 4567
Q ss_pred hcceEEEccCCC--CchhhHHHHHhcCCCC-CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHH
Q 000777 1118 RQQMGLVSQEPV--LFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR 1190 (1288)
Q Consensus 1118 R~~i~~V~Qd~~--Lf~gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQr 1190 (1288)
|++++|+||+|. +|..|+.+|+.++... ..+ ++++.++++.+++.++..+ ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 899999999984 7777999999875211 122 3456777777777665443 346899999999
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhh
Q 000777 1191 VAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1191 laiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 378999999999999889999999999999999999998
Q ss_pred cC
Q 000777 1269 NI 1270 (1288)
Q Consensus 1269 ~~ 1270 (1288)
++
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 65
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=371.35 Aligned_cols=204 Identities=27% Similarity=0.502 Sum_probs=177.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999963 36999999999999 99999999999999999999999999999999999998776 67899999
Q ss_pred EEccCCCCchh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|.+ |++||+.+... ...+ ++++.++++..++.++. ++ ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KK----KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hC----chhhCCHHHHHHHHHHHH
Confidence 99999999875 99999975310 0111 34566777777775542 22 345799999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
|+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999965 9999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=378.89 Aligned_cols=224 Identities=26% Similarity=0.468 Sum_probs=190.2
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCceEEECCeeccCC--C
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--P---DAGHITLDGVEIQKL--Q 1113 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i--~ 1113 (1288)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|++||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 369999999999999999999999999999999999986 4 689999999998643 4
Q ss_pred HHHHhcceEEEccCCCCch-hhHHHHHhcCCC--CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChh
Q 000777 1114 LKWLRQQMGLVSQEPVLFN-DTIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGG 1186 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~-gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1186 (1288)
...+|++++|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.+++.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5578899999999999987 699999976311 1111 2345666777776554422 233456789999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1265 (1288)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778899999999999865 9999999999999999999
Q ss_pred hhhcCCCcH
Q 000777 1266 NLINIPDGF 1274 (1288)
Q Consensus 1266 eLl~~~~g~ 1274 (1288)
++...+...
T Consensus 233 ~~~~~~~~~ 241 (252)
T PRK14256 233 KIFTTPEKK 241 (252)
T ss_pred HHHhCCCcH
Confidence 998764443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=364.33 Aligned_cols=218 Identities=33% Similarity=0.517 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCe---eccCCCHHHHh
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV---EIQKLQLKWLR 1118 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~~~~lR 1118 (1288)
.|.++|++..|+.. ++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 37889999999743 6899999999999999999999999999999999999999999999999 76663 3445
Q ss_pred cceEEEccCCCCc-hhhHHHHHhcCCCC-------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHH
Q 000777 1119 QQMGLVSQEPVLF-NDTIRANIAYGKGG-------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR 1190 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf-~gTIreNl~~g~~~-------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQr 1190 (1288)
++||+|+|+..|| ..||++||+||..- .....++.+.++.+++..+-+ ..+.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHH
Confidence 7899999999888 68999999999521 122345555666666654432 3467899999999
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhh
Q 000777 1191 VAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1191 laiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
+||||||..+|++|+||||.++||+.-...+.+-|++... +.|+++|||+.+.+. .||||+||++|+|.+.|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998753 689999999999875 5999999999999999999999
Q ss_pred hcCCCcHH
Q 000777 1268 INIPDGFY 1275 (1288)
Q Consensus 1268 l~~~~g~y 1275 (1288)
...|++.|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 98887765
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=372.73 Aligned_cols=208 Identities=28% Similarity=0.513 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
|+++||+++|++... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999975 456778999
Q ss_pred EEEccCCCCchh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+|+||++.+|.. |++||+.+... ...+ ++++.++++..++.+. ......+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975311 1112 3345566666665444 33456689999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47899999999998865 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=383.96 Aligned_cols=215 Identities=29% Similarity=0.483 Sum_probs=187.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998777788899999
Q ss_pred EEccCC--CCchhhHHHHHhcCCC-CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1123 LVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1123 ~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
||||+| .+|+.|++||+.++.. ...+. +.+.++++..++.++.. .....||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999998 4788999999986421 11232 34566777777665433 334589999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998754 789999999999985 5999999999999999999999864
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=382.66 Aligned_cols=225 Identities=27% Similarity=0.414 Sum_probs=189.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH---HHh
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1118 (1288)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876543 457
Q ss_pred cceEEEccCCCCchh-hHHHHHhcCCC--CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1119 QQMGLVSQEPVLFND-TIRANIAYGKG--GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~g-TIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
++++|+||++.+|.+ |++||+.++.. ...+. +++.++++..++.+. .......||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 889999999999976 99999975311 11222 234445555554332 2334568999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 6899999999999866 9999999999999999999998
Q ss_pred cCCCcHHHHHHH
Q 000777 1269 NIPDGFYASLIA 1280 (1288)
Q Consensus 1269 ~~~~g~y~~L~~ 1280 (1288)
+++...+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 764445566654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=384.54 Aligned_cols=220 Identities=31% Similarity=0.557 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC----CCHHH
Q 000777 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1288)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 457 (1288)
++++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 2469999999999999999999999999999999999999999999999999863 33556
Q ss_pred HhcceEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000777 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 532 (1288)
.+++|+||+|+| .+|+.||+|||.|+... .+.++..+ .+.+.++.+ |++ ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 778999999998 68888999999986432 22322211 122334444 554 3346677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 533 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999998853 6899999999999865 99999999999999999999876
Q ss_pred C
Q 000777 610 D 610 (1288)
Q Consensus 610 ~ 610 (1288)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=379.88 Aligned_cols=219 Identities=29% Similarity=0.461 Sum_probs=186.7
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCC--------
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL-------- 1112 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i-------- 1112 (1288)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 3699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhcceEEEccCCCCch-hhHHHHHhcCCC--CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCC
Q 000777 1113 -----QLKWLRQQMGLVSQEPVLFN-DTIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERG 1180 (1288)
Q Consensus 1113 -----~~~~lR~~i~~V~Qd~~Lf~-gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G 1180 (1288)
....+|++++||||++.+|. .|++||+.++.. .... ++++.++++..++.++. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 13567889999999999997 599999976310 0111 23455566666554432 13456
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 000777 1181 LQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258 (1288)
Q Consensus 1181 ~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~I 1258 (1288)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999999875 47999999999999986 999999999999
Q ss_pred EEecChhhhhcCCC
Q 000777 1259 VEKGKHENLINIPD 1272 (1288)
Q Consensus 1259 ve~Gt~~eLl~~~~ 1272 (1288)
++.|+++++.+.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999986544
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=372.35 Aligned_cols=210 Identities=24% Similarity=0.440 Sum_probs=180.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999998653 356788999
Q ss_pred EEccCCCCch-hhHHHHHhcCCC-CCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|. .|++||+.++.. ... .++++.++++..++.++.. .....||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999998887 499999975310 011 2345666777777655432 2345799999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998753 6899999999999875 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=383.11 Aligned_cols=217 Identities=30% Similarity=0.527 Sum_probs=189.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC---ceEEECCeeccCCCHHHHh
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQLKWLR 1118 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~idG~di~~i~~~~lR 1118 (1288)
.|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|++||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999742 2469999999999999999999999999999999999999988 8999999999887777889
Q ss_pred cceEEEccCC--CCchhhHHHHHhcCCC-CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1119 QQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1119 ~~i~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
++++||||+| .+++.|++|||.++.. ...+. +++.++++..++.++.. ....+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHH
Confidence 9999999998 4678999999987521 12333 33566677777655433 34468999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhc
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
+|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|++++++.
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 789999999999998899999999999999999999876
Q ss_pred C
Q 000777 1270 I 1270 (1288)
Q Consensus 1270 ~ 1270 (1288)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=379.28 Aligned_cols=220 Identities=32% Similarity=0.526 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 455 (1288)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 469999999999999999999999999999999999974 689999999999864 345
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-C----HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
..+|+.++|++|++.+|..|++||+.++... . . .+++.++++..++.+.+ .+..+..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 5678899999999999988999999875311 1 1 12233334433332211 2345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 999999999999999999998
Q ss_pred hcCCC
Q 000777 608 VEDPE 612 (1288)
Q Consensus 608 ~~~~~ 612 (1288)
.+.+.
T Consensus 236 ~~~~~ 240 (253)
T PRK14242 236 FTRPR 240 (253)
T ss_pred HcCCC
Confidence 76543
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=378.99 Aligned_cols=225 Identities=32% Similarity=0.519 Sum_probs=188.5
Q ss_pred cccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--C
Q 000777 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--F 453 (1288)
Q Consensus 381 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 453 (1288)
.+.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 469999999999999999999999999999999999986 589999999999853 4
Q ss_pred CHHHHhcceEEEcCCCCCCchhHHHHHhcCCCC---CCHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
+...+|++|+|++|++.+|..|++||+.++... .+.+ ++.++++..++.+ ++....++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHH
Confidence 456778899999999999999999999876321 2222 2333333333211 2234566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChh
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1288)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHhcCCCchH
Q 000777 606 KLVEDPEGAY 615 (1288)
Q Consensus 606 ~l~~~~~~~~ 615 (1288)
++.+.+...+
T Consensus 241 ~~~~~~~~~~ 250 (260)
T PRK10744 241 TIFTKPAKKQ 250 (260)
T ss_pred HHHhCCCcHH
Confidence 9876544333
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=388.09 Aligned_cols=214 Identities=29% Similarity=0.466 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999997654 4578999
Q ss_pred EEEccCCCCch-hhHHHHHhcCC-CCCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGK-GGDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~-~~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+||||++.+|. .|++||+.+.. ....+.. ++.++++..++.+ ..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 79999997521 1112222 3344455444432 334444 479999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||+.+|++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999976 999999999999999999999754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=388.18 Aligned_cols=229 Identities=28% Similarity=0.431 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCC----------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC
Q 000777 383 DIELRDVYFSYPARP----------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~----------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 452 (1288)
-|+++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhcceEEEcCCC--CCC-chhHHHHHhcCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCC
Q 000777 453 FQLQ---WIRKKIGLVSQEP--VLF-TGSIKDNIAYGK----DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT 521 (1288)
Q Consensus 453 ~~~~---~~r~~i~~v~Q~~--~l~-~~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~ 521 (1288)
++.. .+|++|+||+|+| .++ ..||.|||.++. +..+.++..+.. .+.++.+ |++ ......+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 7754 3577899999998 466 579999997642 122333322211 2333443 442 24567778
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEE
Q 000777 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1288)
Q Consensus 522 ~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i 598 (1288)
+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998864 6899999999999976 999999999999
Q ss_pred eEecChhHHhcCCCchHHHH
Q 000777 599 VEKGTHSKLVEDPEGAYSQL 618 (1288)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~ 618 (1288)
++.|+++++.+++...|.+.
T Consensus 241 ve~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred EEEcCHHHHHcCCCCHHHHH
Confidence 99999999998766677653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=382.00 Aligned_cols=222 Identities=27% Similarity=0.423 Sum_probs=190.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCCCch-hhHHHHHhcCCCC---------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
+|+||++.++. .|++||+.++... ...++++.++++.+++.+++.. ...+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHH
Confidence 99999987665 4999999865210 1123456777777777554332 2357999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999998753 7899999999999865 9999999999999999999987
Q ss_pred cCCCcHHHHHH
Q 000777 1269 NIPDGFYASLI 1279 (1288)
Q Consensus 1269 ~~~~g~y~~L~ 1279 (1288)
+. ..+.+++
T Consensus 237 ~~--~~~~~~~ 245 (265)
T PRK10575 237 RG--ETLEQIY 245 (265)
T ss_pred CH--HHHHHHh
Confidence 53 3344443
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=377.08 Aligned_cols=220 Identities=30% Similarity=0.506 Sum_probs=189.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-----AGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~~ 1114 (1288)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4899999999963 36999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDA-T----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|+.++||||++.+|+.|++||+.++.. ... . ++.+.++++..++.+.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678999999999999999999999987521 011 1 233455566666654432 234566789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999876 899999999999999999999
Q ss_pred hcCC
Q 000777 1268 INIP 1271 (1288)
Q Consensus 1268 l~~~ 1271 (1288)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14249 234 FSRP 237 (251)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=396.01 Aligned_cols=214 Identities=26% Similarity=0.484 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++...++++|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 489999999996 35799999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEcCCCCC-CchhHHHHHhcCCCCC-------C---HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000777 463 GLVSQEPVL-FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 531 (1288)
+||+|++.+ |+.|++||+.++.... . .+++.++++.. |+.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-----------gl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-----------GVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHH
Confidence 999999987 5789999999874211 1 12233444444 344344556679999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 532 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
+|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. |||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999886 46899999999999965 99999999999999999999886
Q ss_pred C
Q 000777 610 D 610 (1288)
Q Consensus 610 ~ 610 (1288)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=379.15 Aligned_cols=223 Identities=29% Similarity=0.471 Sum_probs=191.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeecc--CCCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQ--KLQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~--~i~~ 1114 (1288)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 369999999999999999999999999999999999986 47999999999985 3456
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCCC-CC---CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DA---TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR 1190 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-~~---sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQr 1190 (1288)
..+|++++|++|++.+|+.|++||+.++... .. .++++.++++.+++.+++.. ..+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875211 11 23445666777777655432 2345677899999999
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEe---------CCEEEE
Q 000777 1191 VAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVK---------NGVIVE 1260 (1288)
Q Consensus 1191 laiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~---------~G~Ive 1260 (1288)
++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||||++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999999865 99999998 899999
Q ss_pred ecChhhhhcCCCcH
Q 000777 1261 KGKHENLINIPDGF 1274 (1288)
Q Consensus 1261 ~Gt~~eLl~~~~g~ 1274 (1288)
.|+++++.+.+...
T Consensus 240 ~~~~~~~~~~~~~~ 253 (264)
T PRK14243 240 FDRTEKIFNSPQQQ 253 (264)
T ss_pred eCCHHHHHhCCCcH
Confidence 99999998764433
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=374.71 Aligned_cols=217 Identities=25% Similarity=0.460 Sum_probs=181.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH-Hhcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW-LRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1121 (1288)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .|+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 36999999999999999999999999999999999999999999999999998777655 45789
Q ss_pred EEEccCCCCchh-hHHHHHhcCCC-CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcC
Q 000777 1122 GLVSQEPVLFND-TIRANIAYGKG-GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~g-TIreNl~~g~~-~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr 1199 (1288)
+|+||++.+|.+ |++||+.++.. .....++..+ .+.+.+..+ |++.........||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 99999986421 1112222111 122233332 44444556677899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhc
Q 000777 1200 DPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1200 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 47899999999987765 99999999999999999999875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=379.54 Aligned_cols=227 Identities=30% Similarity=0.444 Sum_probs=187.2
Q ss_pred EEEEEEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH-
Q 000777 1043 IELHHVSFKYPSR------PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK- 1115 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~- 1115 (1288)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 134799999999999999999999999999999999999999999999999999877654
Q ss_pred --HHhcceEEEccCCC--Cc-hhhHHHHHhcCCC--CC----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCC
Q 000777 1116 --WLRQQMGLVSQEPV--LF-NDTIRANIAYGKG--GD----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1116 --~lR~~i~~V~Qd~~--Lf-~gTIreNl~~g~~--~~----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1184 (1288)
.+|++|+|+||+|. ++ ..|++||+.+... .. ..++++.++++..++.+ ...+..+..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 36788999999983 44 4799999964210 01 12234555555555431 22345567899
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 000777 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261 (1288)
Q Consensus 1185 gGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~ 1261 (1288)
||||||++|||||+.+|++|||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999975 999999999999999
Q ss_pred cChhhhhcCCCcHHHHHH
Q 000777 1262 GKHENLINIPDGFYASLI 1279 (1288)
Q Consensus 1262 Gt~~eLl~~~~g~y~~L~ 1279 (1288)
|++++++..+...+.++.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999975333444443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=372.85 Aligned_cols=217 Identities=26% Similarity=0.472 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH-hcce
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 462 (1288)
|+++||+++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 469999999999999999999999999999999999999999999999999987776544 6789
Q ss_pred EEEcCCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
+|+||++.+|.. |++||+.++.......+... + +.+.++.++ +++......+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~--~---~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA--R---LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHH--H---HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998875 99999988643221111111 1 112222221 2334455677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999876 46899999999999866 99999999999999999887753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=375.12 Aligned_cols=220 Identities=33% Similarity=0.543 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH---HHh
Q 000777 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1288)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 459 (1288)
|+++|++++|+.+. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996321 12699999999999999999999999999999999999999999999999999876543 347
Q ss_pred cceEEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
+.++|+||++.+|. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999986 6999999875321 1111111 1223445555 66666667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998753 6899999999999876 999999999999999998887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=368.12 Aligned_cols=200 Identities=31% Similarity=0.529 Sum_probs=173.6
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEE
Q 000777 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1288)
Q Consensus 1044 ~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1123 (1288)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 469999999999999999999999999999999999999999999999998854 457789999
Q ss_pred EccCC--CCchhhHHHHHhcCCCC-CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1124 VSQEP--VLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1124 V~Qd~--~Lf~gTIreNl~~g~~~-~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
+||+| .+|..|++||+.++... ...++++.++++..++.++..+ ....||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhC
Confidence 99998 46789999999875221 1234567888888887665433 3347999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIV 1259 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv 1259 (1288)
|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 57899999999999975 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=377.34 Aligned_cols=221 Identities=32% Similarity=0.553 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC---HHHHhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 460 (1288)
++++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 246999999999999999999999999999999999999999999999999998766 456778
Q ss_pred ceEEEcCCCCCCc-hhHHHHHhcCCCCCCH--HHH---HHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDATT--EEI---RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~--~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
.++|+||++.+|. .|++||+.++...... ... ........+.+.++.+ |+.......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999998886 6999999875321100 000 0000011123344454 565566778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
|||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999999999999999999998753 6899999999999985 9999999999999999988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=376.20 Aligned_cols=218 Identities=34% Similarity=0.568 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999631 46999999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHhc
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT--LVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
|++|++.+|. .|++||+.++... ...++. ...+.+.++.+ |+.. ...+.+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999885 6999999875321 111111 11223445555 5553 566778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998853 6899999999998765 999999999999999999988654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=379.26 Aligned_cols=222 Identities=27% Similarity=0.459 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1114 (1288)
-++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 369999999999999999999999999999999999987 699999999999853 455
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CCCCH-----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDATE-----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~~sd-----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|..|++||+.++.. ...++ +.+.++++..++.+ ++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 11221 22344444444332 222334566789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hcCCCc
Q 000777 1268 INIPDG 1273 (1288)
Q Consensus 1268 l~~~~g 1273 (1288)
.+++..
T Consensus 254 ~~~~~~ 259 (271)
T PRK14238 254 FSNPSD 259 (271)
T ss_pred HcCCCC
Confidence 876443
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=395.01 Aligned_cols=221 Identities=32% Similarity=0.516 Sum_probs=189.6
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcc
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1120 (1288)
..|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|++||.++.+.+. .|++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 369999999999999999999999999999999999999999999999999987664 5789
Q ss_pred eEEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1121 MGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
++||+|++.+|. .|++|||.|+.. ...+ .+++.++++..++.++. .....+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 999999999996 599999998632 1122 23455666666665443 334458999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1271 (1288)
|||+++|++||||||||+||+.+...+.+.|++.. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887764 36899999999998754 9999999999999999999999887
Q ss_pred CcHHHH
Q 000777 1272 DGFYAS 1277 (1288)
Q Consensus 1272 ~g~y~~ 1277 (1288)
...|..
T Consensus 242 ~~~~~a 247 (377)
T PRK11607 242 TTRYSA 247 (377)
T ss_pred ccHHHH
Confidence 665543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=363.87 Aligned_cols=203 Identities=34% Similarity=0.602 Sum_probs=179.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
+.++++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999632 2469999999999999999999999999999999999999999999999999988887788889
Q ss_pred eEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
|+||+|+|.+|++|++||+.+... ...+++.++++ +++++.+||||||||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999986532 23333222221 34567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecCh
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 604 (1288)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778899999999999877999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=394.20 Aligned_cols=207 Identities=35% Similarity=0.532 Sum_probs=178.5
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHH----hcceEEEccCCCCch-h
Q 000777 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFN-D 1133 (1288)
Q Consensus 1059 ~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~~i~~V~Qd~~Lf~-g 1133 (1288)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.|+.+.+...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999988876554 468999999999996 5
Q ss_pred hHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEec
Q 000777 1134 TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDE 1208 (1288)
Q Consensus 1134 TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDE 1208 (1288)
|++||+.++.. ...+ ++++.++++..++.++..+ ...+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987521 0112 3456667777777655433 345899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCcHHH
Q 000777 1209 ATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276 (1288)
Q Consensus 1209 aTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~y~ 1276 (1288)
|||+||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 999999999999999999874 47899999999999865 999999999999999999999876544443
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=348.30 Aligned_cols=220 Identities=26% Similarity=0.448 Sum_probs=192.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 461 (1288)
-++++|++..|+ ..++|+||||++++||+++|+|+||+|||||+++|+|+.+|.+|+|.++|+|++..+++. .|..
T Consensus 3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 478999999996 357999999999999999999999999999999999999999999999999999998776 5789
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|+||||.-.+|. .||+||+.+|.....+++. .....++..+-+| -+....+.++.+|||||||.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999995 5999999987433222111 1111334455667 477778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|-++...... |||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999985 4599999999998765 999999999999999999999876
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=377.01 Aligned_cols=229 Identities=26% Similarity=0.434 Sum_probs=193.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccCC--CH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQKL--QL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1114 (1288)
-|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|+.+| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3699999999999999999999999999999999999763 489999999999776 45
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCCC-C-----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-D-----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
...|+.++|+||++.+|+.|++||+.++... . ..++++.++++.+++.+.+ .+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 6778899999999999999999999875210 1 1123455666666654332 2335566789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999965 999999999999999999999
Q ss_pred hcCCCcHHHHHHH
Q 000777 1268 INIPDGFYASLIA 1280 (1288)
Q Consensus 1268 l~~~~g~y~~L~~ 1280 (1288)
.+++...+.+.+-
T Consensus 236 ~~~~~~~~~~~~~ 248 (253)
T PRK14261 236 FENPHEELTENYI 248 (253)
T ss_pred HhCCCcHHHHHHh
Confidence 8765445555443
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=357.67 Aligned_cols=178 Identities=40% Similarity=0.718 Sum_probs=166.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23699999999999999999999999999999999999999999999999998776 667889999
Q ss_pred EEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCC
Q 000777 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202 (1288)
Q Consensus 1123 ~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ 1202 (1288)
|+||+|.+|+.|++||+ ...||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEccCCeeecccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999997 45799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 000777 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1203 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G 1262 (1288)
+|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=388.89 Aligned_cols=230 Identities=27% Similarity=0.417 Sum_probs=189.2
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC---CceEEECCeeccCCCHHHH
Q 000777 1042 EIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEIQKLQLKWL 1117 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~~~~l 1117 (1288)
-++++||++.|+... ..++|+||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEEccCC--CCch-hhHHHHHhcCC--CCCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCC
Q 000777 1118 R----QQMGLVSQEP--VLFN-DTIRANIAYGK--GGDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1118 R----~~i~~V~Qd~--~Lf~-gTIreNl~~g~--~~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1184 (1288)
| ++|+||||+| .++. .|+.+|+.... ....+.+ ++.++++.+++ |++. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999998 3443 46777664210 1112322 34445555444 3322 22566788999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 000777 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261 (1288)
Q Consensus 1185 gGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~ 1261 (1288)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 7899999999999975 999999999999999
Q ss_pred cChhhhhcCCCcHHHHHH
Q 000777 1262 GKHENLINIPDGFYASLI 1279 (1288)
Q Consensus 1262 Gt~~eLl~~~~g~y~~L~ 1279 (1288)
|+++++++++...|.+.+
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999988777777744
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=385.31 Aligned_cols=220 Identities=29% Similarity=0.500 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC---------
Q 000777 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------- 452 (1288)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--------- 452 (1288)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996421 2369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhcceEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcc
Q 000777 453 ---------------FQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID 513 (1288)
Q Consensus 453 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~ 513 (1288)
.+...++++||||||+| .+|..||+|||.|+... ...++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456788999999986 67888999999987432 222222211 12334444 554
Q ss_pred -ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEE
Q 000777 514 -TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMI 590 (1288)
Q Consensus 514 -t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i 590 (1288)
......+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 346677889999999999999999999999999999999999999999999988754 7899999999998865 9999
Q ss_pred EEEeCCEEeEecChhHHhcC
Q 000777 591 AVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~ 610 (1288)
++|++|++++.|+++++..+
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998765
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=378.81 Aligned_cols=222 Identities=31% Similarity=0.479 Sum_probs=190.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1114 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5999999999963 3699999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-----CCCC-HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-----GDAT-EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-----~~~s-d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|+.|++||+.++.. ++.. ++.+.++++.+++.+++.. ..+..+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678899999999999999999999976411 1111 2345677777777655432 23455678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEe-----CCEEEEec
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVK-----NGVIVEKG 1262 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-----~G~Ive~G 1262 (1288)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999998777899999999999865 99999998 59999999
Q ss_pred ChhhhhcCCCc
Q 000777 1263 KHENLINIPDG 1273 (1288)
Q Consensus 1263 t~~eLl~~~~g 1273 (1288)
+++++.+.+..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999875443
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=374.82 Aligned_cols=213 Identities=24% Similarity=0.439 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH-Hhcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW-LRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1121 (1288)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 36999999999999999999999999999999999999999999999999998877654 45679
Q ss_pred EEEccCCCCchh-hHHHHHhcCCCCC-------------CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhH
Q 000777 1122 GLVSQEPVLFND-TIRANIAYGKGGD-------------ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~g-TIreNl~~g~~~~-------------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1187 (1288)
+|+||++.+|.+ |++||+.++.... ..++++.++++..+ ++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIG-----------LADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHH
Confidence 999999999986 9999998742110 01223344444443 3434455667899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhh
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHEN 1266 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1266 (1288)
|||++||||++++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999975 99999999999999999999
Q ss_pred hhc
Q 000777 1267 LIN 1269 (1288)
Q Consensus 1267 Ll~ 1269 (1288)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=372.64 Aligned_cols=205 Identities=37% Similarity=0.517 Sum_probs=173.3
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH----HH
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK----WL 1117 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~----~l 1117 (1288)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 14699999999999999999999999999999999999999999999999999877643 24
Q ss_pred hcceEEEccCCCCchh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1118 RQQMGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1118 R~~i~~V~Qd~~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
|++++|+||++.+|.+ |++||+.++.. .... ++++.++++..++.++ ......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHHH
Confidence 6789999999999976 99999987421 1111 2345555555555433 3445568999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEE
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVI 1258 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~I 1258 (1288)
+|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998764 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=372.43 Aligned_cols=215 Identities=23% Similarity=0.471 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++||++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999632 256999999999999999999999999999999999999999999999999986543 55677899
Q ss_pred EEcCCCCCC-chhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|++|++.++ ..|++||+.++.. ....++..+ .+.+.++.+ |+.........+||||||||++||||++.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999988 5799999987421 111111111 122334443 444444556679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999998777899999999999876 999999999999999988775
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=374.91 Aligned_cols=214 Identities=32% Similarity=0.502 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCC--CHHHHhcc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL--QLKWLRQQ 1120 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i--~~~~lR~~ 1120 (1288)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 3699999999999999999999999999999999999999999999999999764 34567889
Q ss_pred eEEEccCCCCch-hhHHHHHhcCCC--CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1121 MGLVSQEPVLFN-DTIRANIAYGKG--GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~-gTIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
++|+||++.+|. .|++||+.++.. ...+.+ ++.++++..+ ++.........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVG-----------LAERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChHHHhcChhhcCHHHHHHHHH
Confidence 999999998885 699999987521 112222 2334444443 4444445567899999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||++++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999965 999999999999999999999865
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=376.63 Aligned_cols=216 Identities=33% Similarity=0.509 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC--------H
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ--------L 1114 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------~ 1114 (1288)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 36999999999999999999999999999999999999999999999999986542 3
Q ss_pred HHHhcceEEEccCCCCch-hhHHHHHhcCCC--CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhH
Q 000777 1115 KWLRQQMGLVSQEPVLFN-DTIRANIAYGKG--GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~-gTIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1187 (1288)
..+|++++||||++.+|. .|++||+.++.. .....+ .+.++++..++ +........+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-----------AGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------cchhhCChhhCChHH
Confidence 567889999999998885 799999976310 112222 23334444333 333445677899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1265 (1288)
|||++|||||+.+|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 47899999999999965 9999999999999999999
Q ss_pred hhhcCCC
Q 000777 1266 NLINIPD 1272 (1288)
Q Consensus 1266 eLl~~~~ 1272 (1288)
++.+.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9986543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=375.91 Aligned_cols=221 Identities=33% Similarity=0.471 Sum_probs=189.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccCC--CH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQKL--QL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1114 (1288)
.|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999963 3699999999999999999999999999999999999875 799999999999653 34
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCCC-CC-C----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DA-T----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|..|++||+.++... .. + ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 5678999999999999999999999865211 11 1 2345667777776543322 23456678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999866 999999999999999999999
Q ss_pred hcCCC
Q 000777 1268 INIPD 1272 (1288)
Q Consensus 1268 l~~~~ 1272 (1288)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14270 234 FLEPQ 238 (251)
T ss_pred hcCCC
Confidence 86543
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=367.29 Aligned_cols=204 Identities=26% Similarity=0.454 Sum_probs=179.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEccCCCCc-hhhHHHHHhcCCC-CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1123 LVSQEPVLF-NDTIRANIAYGKG-GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1123 ~V~Qd~~Lf-~gTIreNl~~g~~-~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
||||++.+| +.|++||+.++.. ...+++++.++++..++.+... .....||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999877 5799999976421 1235667888888888766543 23457999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 47899999999999865 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=371.33 Aligned_cols=203 Identities=30% Similarity=0.538 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH---HHhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 460 (1288)
++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 24699999999999999999999999999999999999999999999999998766543 3678
Q ss_pred ceEEEcCCCCCCc-hhHHHHHhcCCCC--CC----HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
+++|++|++.+|. .|++||+.++... .. .+++.++ ++.+ |+.........+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAA---------LEKV--GLEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHH---------HHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 9999999999886 5999999875221 11 1223333 3333 44444555667999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEE
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i 598 (1288)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998754 6899999999999976 999999999975
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=375.37 Aligned_cols=225 Identities=32% Similarity=0.525 Sum_probs=193.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1114 (1288)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|++||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 369999999999999999999999999999999999874 489999999999865 346
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CC-CC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD-AT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~-~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|..|++||+.++.. .. .+ ++++.++++.+++.+++..+ ++..+..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678999999999999999999999986421 11 11 23466677888887665432 3455778999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 899999999999999999999
Q ss_pred hcCCCcHHH
Q 000777 1268 INIPDGFYA 1276 (1288)
Q Consensus 1268 l~~~~g~y~ 1276 (1288)
...+.+.|.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14266 233 FINPKDKRT 241 (250)
T ss_pred HhCCCChHH
Confidence 876566554
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=379.89 Aligned_cols=217 Identities=29% Similarity=0.476 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCC--CchhhHHHHHhcCCCC-CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEPV--LFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~~--Lf~gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
+|+||+|. ++..|+++|+.++... ... ++++.++++..++.++. .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999984 5567899999875211 112 23455666666654432 344568999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 6899999999999988999999999999999999999775
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=361.52 Aligned_cols=224 Identities=34% Similarity=0.580 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCC---------------------CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 000777 383 DIELRDVYFSYPARPN---------------------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~---------------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 441 (1288)
.|+++||++-|+.++. ..-++|+||+|+.||+..|.|=||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5899999998864321 1237899999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHh----cceEEEcCCCCCC-chhHHHHHhcCCCCC--C----HHHHHHHHHHcCHHHHHHhCCC
Q 000777 442 EVLIDGINLKEFQLQWIR----KKIGLVSQEPVLF-TGSIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQ 510 (1288)
Q Consensus 442 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~ 510 (1288)
+|+++|.|+..++.++|| +++++|||+..|+ +.||.||..||.+-. . .++..++++.+++++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999877653 6899999999988 569999999996522 2 234455666676666655555
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-c
Q 000777 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-A 587 (1288)
Q Consensus 511 g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~ 587 (1288)
.+||||+||||.|||||..+|+||++|||+|||||--+..+|+.|.++.+ .||+|+|||++++.-+ .
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 59999999999999999999999999999999999999999999987754 5899999999999755 9
Q ss_pred CEEEEEeCCEEeEecChhHHhcCCCchHHH
Q 000777 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1288)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1288)
|||..|++|+|++.|+|+|++.+|...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999988776654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=379.88 Aligned_cols=215 Identities=31% Similarity=0.544 Sum_probs=185.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC-HHHHhcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-LKWLRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~lR~~i 1121 (1288)
++++||+++|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 236999999999999999999999999999999999999999999999999998765 46788899
Q ss_pred EEEccCCC--CchhhHHHHHhcCCCC-CCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHH
Q 000777 1122 GLVSQEPV--LFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1122 ~~V~Qd~~--Lf~gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1194 (1288)
+|+||+|. +++.|++||+.++... ..+ ++++.++++..++.++ ....+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHH
Confidence 99999985 6778999999875211 122 2344555555555443 3344568999999999999
Q ss_pred HHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1195 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||+.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998865 47899999999999988999999999999999999998764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=378.32 Aligned_cols=222 Identities=33% Similarity=0.530 Sum_probs=186.3
Q ss_pred cccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCC--C
Q 000777 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1288)
Q Consensus 381 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 453 (1288)
.+.|+++||+++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 357999999999962 4699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCchhHHHHHhcCCC--CC--CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCCh
Q 000777 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1288)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 525 (1288)
+...+|+.++|++|++.+|..|++||+.++.. .. .. +++.++++..++.+.+ ....+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 45567889999999999998899999987531 11 11 2223333333332211 2245667789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecCh
Q 000777 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 526 Gqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1288)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999966 999999999999999999
Q ss_pred hHHhcCCC
Q 000777 605 SKLVEDPE 612 (1288)
Q Consensus 605 ~~l~~~~~ 612 (1288)
+++..++.
T Consensus 247 ~~~~~~~~ 254 (267)
T PRK14235 247 EKMFTNPD 254 (267)
T ss_pred HHHHhCCC
Confidence 99876533
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=394.18 Aligned_cols=221 Identities=29% Similarity=0.488 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876543 4689
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+||+|++.+|. .||+|||.|+... ...++..+ .+.+.++.+ |++........+|||||||||+|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 5999999987431 12221111 122334444 55555666778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchH
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1288)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999999988754 6899999999998865 99999999999999999999987655433
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=377.47 Aligned_cols=222 Identities=27% Similarity=0.442 Sum_probs=189.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccCCC-HH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQKLQ-LK 1115 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~-~~ 1115 (1288)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 3699999999999999999999999999999999999986 6999999999997663 45
Q ss_pred HHhcceEEEccCCCCchhhHHHHHhcCCC--CCCCHHHH----HHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKG--GDATEAEI----QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~--~~~sd~ei----~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
.+|++++|+||++.+|+.|+++|+.++.. ...+++++ .++++..++.+.+ ++.+...+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 67899999999999999999999986421 11344443 2334444443322 23345667899999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 9999999999999999999998
Q ss_pred cCCCc
Q 000777 1269 NIPDG 1273 (1288)
Q Consensus 1269 ~~~~g 1273 (1288)
+.+..
T Consensus 251 ~~~~~ 255 (276)
T PRK14271 251 SSPKH 255 (276)
T ss_pred hCcCc
Confidence 76443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=373.13 Aligned_cols=213 Identities=29% Similarity=0.466 Sum_probs=180.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH-Hhcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW-LRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1121 (1288)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999973 36999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEccCCCCchh-hHHHHHhcCCCC-CCCHHH-HHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1122 GLVSQEPVLFND-TIRANIAYGKGG-DATEAE-IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~g-TIreNl~~g~~~-~~sd~e-i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
+|+||++.+|.. |++||+.++... ...+++ ..++++.. ++++.........||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF----------PVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHH----------HhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999976 999999865211 111121 22222222 12333345566789999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998764 7899999999999986 9999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=370.38 Aligned_cols=206 Identities=32% Similarity=0.501 Sum_probs=173.4
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH---Hh
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1118 (1288)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 246999999999999999999999999999999999999999999999999998876544 34
Q ss_pred -cceEEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1119 -~~i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
++++|+||++.+|. .|++||+.++.. .... ++++.++++..++. .........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHH
Confidence 68999999999885 699999976311 0111 22344455544443 334445578999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEE
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIV 1259 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Iv 1259 (1288)
+|||||+++|+||||||||++||+++...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999998753 78999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=380.80 Aligned_cols=222 Identities=32% Similarity=0.520 Sum_probs=181.9
Q ss_pred EEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH----hc
Q 000777 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RK 460 (1288)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~ 460 (1288)
.++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4568888885 3468999999999999999999999999999999999999999999999999987665442 46
Q ss_pred ceEEEcCCCCCC-chhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
+++|++|++.+| ..|++||+.++... ....+..+ .+.+.++.+ |++..+.....+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----RAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 899999999988 46999999875321 11111111 112233333 444445556679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCch
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGA 614 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 614 (1288)
+++|+||||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.+...
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 255 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPAND 255 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcH
Confidence 999999999999999999999999999998753 6899999999999865 9999999999999999999998765444
Q ss_pred HH
Q 000777 615 YS 616 (1288)
Q Consensus 615 ~~ 616 (1288)
|.
T Consensus 256 ~~ 257 (269)
T cd03294 256 YV 257 (269)
T ss_pred HH
Confidence 43
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=369.15 Aligned_cols=204 Identities=34% Similarity=0.576 Sum_probs=174.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999999766542 57899
Q ss_pred EEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.++ .......||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHH
Confidence 9999999885 699999986411 1112 2344555666655444 334456899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 7899999999999876 9999999999999886
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=376.86 Aligned_cols=222 Identities=27% Similarity=0.485 Sum_probs=191.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCCchh-hHHHHHhcCCCC---------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1123 ~V~Qd~~Lf~g-TIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
|+||++.+|.+ |++||+.++... ...++++.++++..++.++ .......||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999998876 999999875210 1123345666666666543 23445689999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999999875 47899999999999865 999999999999999999998753
Q ss_pred CCcHHHHHHH
Q 000777 1271 PDGFYASLIA 1280 (1288)
Q Consensus 1271 ~~g~y~~L~~ 1280 (1288)
..+.+++.
T Consensus 229 --~~~~~~~~ 236 (255)
T PRK11231 229 --GLLRTVFD 236 (255)
T ss_pred --HHHHHHhC
Confidence 44555553
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=379.81 Aligned_cols=216 Identities=31% Similarity=0.553 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++||+++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999632 35699999999999999999999999999999999999999999999999999887777778899
Q ss_pred EEEcCCC--CCCchhHHHHHhcCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
+|++|+| .+++.|++|||.++... ... +++.++++..+ ++..+.....+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG-----------MEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcC-----------ChhhhhCCcccCCHHHHHHHHHH
Confidence 9999998 46678999999986322 122 22333344434 44444555679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998864 6899999999999888999999999999999999988764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=392.26 Aligned_cols=223 Identities=32% Similarity=0.541 Sum_probs=188.3
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
..|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++ .++.
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 4599999999996 2469999999999999999999999999999999999999999999999999987654 4678
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
||||+|++.+|. .||+|||.|+... .+..+..+ .+.+.++.+ |+.........+|||||||||+|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999996 5999999987431 22222211 122333444 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchH
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1288)
.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 99999999999999999999999988877643 6899999999999865 99999999999999999999998766544
Q ss_pred H
Q 000777 616 S 616 (1288)
Q Consensus 616 ~ 616 (1288)
.
T Consensus 246 ~ 246 (377)
T PRK11607 246 S 246 (377)
T ss_pred H
Confidence 3
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=373.94 Aligned_cols=214 Identities=30% Similarity=0.468 Sum_probs=180.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeecc------CCCHHH
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ------KLQLKW 1116 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~------~i~~~~ 1116 (1288)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 36999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcceEEEccCCCCchh-hHHHHHhcCCC--CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1117 LRQQMGLVSQEPVLFND-TIRANIAYGKG--GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1117 lR~~i~~V~Qd~~Lf~g-TIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
+|++++|+||++.+|.+ |++||+.++.. ..... +++.++++..++ +..+.....+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL-----------KPYADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 78899999999999874 99999964210 01122 233344444444 33344555789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
|++||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 47899999999999965 999999999999999999998
Q ss_pred hcC
Q 000777 1268 INI 1270 (1288)
Q Consensus 1268 l~~ 1270 (1288)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=375.03 Aligned_cols=220 Identities=30% Similarity=0.526 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH---HHHhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 460 (1288)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999951 3569999999999999999999999999999999999999999999999999877654 34678
Q ss_pred ceEEEcCCCCCCc-hhHHHHHhcCCCCCCH--HHH---HHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDATT--EEI---RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~--~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
+++|+||++.+|. .|++||+.++...... ... ........+.+.++.+ |++......+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 8999999998886 6999999876421100 000 0000011223344554 566666777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999998753 6899999999999865 999999999999999998886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=369.23 Aligned_cols=207 Identities=36% Similarity=0.607 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999876543 457899
Q ss_pred EEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|+||++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 6999999875321 11111111 122344444 555556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998753 6899999999999866 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=381.80 Aligned_cols=218 Identities=32% Similarity=0.553 Sum_probs=183.8
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCC----CHHH
Q 000777 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKW 1116 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 1116 (1288)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999998764 4567
Q ss_pred HhcceEEEccCC--CCchhhHHHHHhcCCC-CCCCHHH----HHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEAE----IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1117 lR~~i~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
+|++|+|+||+| .+|+.|++||+.++.. ...+.++ +.++++..++.+ .........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6888999999986421 1123333 233344444421 1234556789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 37899999999999865 999999999999999999998
Q ss_pred hcC
Q 000777 1268 INI 1270 (1288)
Q Consensus 1268 l~~ 1270 (1288)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=378.88 Aligned_cols=222 Identities=30% Similarity=0.510 Sum_probs=189.9
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CC
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQ 1113 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1113 (1288)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999963 369999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcceEEEccCCCCchhhHHHHHhcCCC----CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKG----GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~----~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
...+|++++||||++.+|..|++||+.++.. ....+++++++++..++...+.. ..+....+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 5678899999999999998999999986411 11124567777777776544321 234566789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEE-EEeCCEEEEecChhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIA-VVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~-vl~~G~Ive~Gt~~eL 1267 (1288)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5799999999999999
Q ss_pred hcCCC
Q 000777 1268 INIPD 1272 (1288)
Q Consensus 1268 l~~~~ 1272 (1288)
.+++.
T Consensus 268 ~~~~~ 272 (285)
T PRK14254 268 FENPE 272 (285)
T ss_pred HhCcC
Confidence 86533
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=380.58 Aligned_cols=226 Identities=29% Similarity=0.467 Sum_probs=190.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccCC--CH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQKL--QL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~~ 1114 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 359999999999999999999999999999999999864 4999999999998643 33
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDA-T----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++||||++.+|..|++||+.++.. ... + ++++.++++..++.+.+. .........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHH
Confidence 467899999999999998999999987521 011 1 234556666666543322 123455678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999999
Q ss_pred hcCCCcHHHH
Q 000777 1268 INIPDGFYAS 1277 (1288)
Q Consensus 1268 l~~~~g~y~~ 1277 (1288)
.+++...|.+
T Consensus 269 ~~~~~~~~~~ 278 (286)
T PRK14275 269 FTNPKDRMTE 278 (286)
T ss_pred HhCCCcHHHH
Confidence 8765544443
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=382.06 Aligned_cols=221 Identities=29% Similarity=0.497 Sum_probs=183.3
Q ss_pred CccEEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccC----C-
Q 000777 1040 KGEIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----L- 1112 (1288)
Q Consensus 1040 ~g~I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i- 1112 (1288)
.+.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999997432 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcceEEEccCC--CCchhhHHHHHhcCCC-CCCCHHHH----HHHHHHhchhHHHHhhhccccccccCCCCCCCh
Q 000777 1113 QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEAEI----QAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1113 ~~~~lR~~i~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd~ei----~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1185 (1288)
+...+|++|+|+||+| .+|..|++||+.++.. .....++. .++++..++ |. ...+.....|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCH
Confidence 4567889999999998 4788899999987521 11233332 233333332 11 123455678999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998753 7899999999998864 9999999999999999
Q ss_pred ChhhhhcC
Q 000777 1263 KHENLINI 1270 (1288)
Q Consensus 1263 t~~eLl~~ 1270 (1288)
+++++++.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=380.58 Aligned_cols=218 Identities=28% Similarity=0.495 Sum_probs=183.1
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCC----CHHH
Q 000777 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKW 1116 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 1116 (1288)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 14699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhcceEEEccCC--CCchhhHHHHHhcCCC-CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1117 lR~~i~~V~Qd~--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
.|+.++|+||+| .+|..|++||+.++.. ...+.+ .+.++++..++.. .........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQMR 152 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHHH
Confidence 788999999998 5888999999986421 122222 2344444444431 1234556789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 47899999999999864 999999999999999999998
Q ss_pred hcC
Q 000777 1268 INI 1270 (1288)
Q Consensus 1268 l~~ 1270 (1288)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13641 233 FSD 235 (287)
T ss_pred hcC
Confidence 764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=371.63 Aligned_cols=219 Identities=26% Similarity=0.389 Sum_probs=181.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH-Hhcc
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW-LRQQ 1120 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~ 1120 (1288)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 36999999999999999999999999999999999999999999999999998877654 6788
Q ss_pred eEEEccCCCCchh-hHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcC
Q 000777 1121 MGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~g-TIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr 1199 (1288)
++|+||++.+|.+ |++||+.++.. ..+.++..+.+ .+.+..++. ++.........||||||||++||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999974 99999987521 11222222211 112222211 1112234567899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1200 DPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1200 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
+|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999875 47899999999998754 999999999999999999999753
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=372.64 Aligned_cols=216 Identities=25% Similarity=0.479 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhcce
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 462 (1288)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 47899999996 346999999999999999999999999999999999999999999999999998776554 35689
Q ss_pred EEEcCCCCCCch-hHHHHHhcCCCCC--CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 463 GLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+|++|++.+|.. |++||+.++.+.. ..++.. ..+.+.++.+ |++......+.+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999998876 9999998753211 111111 1233455555 67766778888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999988764 6899999999998866 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=370.52 Aligned_cols=207 Identities=33% Similarity=0.477 Sum_probs=175.2
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
|+++|++++|++.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996411 1479999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCCch-hhHHHHHhcCCC-CCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+||||++.+|. .|++||+.++.. ... .++++.++++..++.++.. ....+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99999999887 799999976421 011 2345566666666654433 334679999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVK--NGVIVEKGKHE 1265 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~Ive~Gt~~ 1265 (1288)
||+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999874 37899999999998865 99999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=374.14 Aligned_cols=222 Identities=31% Similarity=0.498 Sum_probs=190.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeecc-CCCHH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQ-KLQLK 1115 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~i~~~ 1115 (1288)
.++++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 3699999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HHhcceEEEccCCCCchhhHHHHHhcCCCC-CC-C----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHH
Q 000777 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DA-T----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ 1189 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQ 1189 (1288)
.+|+.++|+||++.+|..|++||+.++... .. . ++++.++++.+++.+.+. .........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 889999999999999999999999865211 11 1 234555666666654432 2334556789999999
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1190 RVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1190 rlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999999997
Q ss_pred cCCCc
Q 000777 1269 NIPDG 1273 (1288)
Q Consensus 1269 ~~~~g 1273 (1288)
.++..
T Consensus 233 ~~~~~ 237 (249)
T PRK14253 233 SNPKD 237 (249)
T ss_pred cCCCC
Confidence 65443
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=389.81 Aligned_cols=219 Identities=27% Similarity=0.387 Sum_probs=182.9
Q ss_pred EEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCe----eccCCCHHHH---h-
Q 000777 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV----EIQKLQLKWL---R- 1118 (1288)
Q Consensus 1047 nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~----di~~i~~~~l---R- 1118 (1288)
++..+|. ...+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+...+ |
T Consensus 29 ~~~~~~g---~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETG---LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhC---CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 3444453 236899999999999999999999999999999999999999999999996 6766665544 3
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
++|+||||++.+|+ .|++||+.++.. ...+ .+++.++++.+++.++.. ....+||||||||++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~ 174 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVG 174 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 58999999999997 799999987521 0112 235567777777765533 334579999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
|||||+++|+|||||||||+||+.+...+++.|.+..+ ++|+|+|||+++.+. .||||++|++|++++.|++++++.
T Consensus 175 LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 175 LARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998754 789999999999985 599999999999999999999997
Q ss_pred CCCcHHHHHH
Q 000777 1270 IPDGFYASLI 1279 (1288)
Q Consensus 1270 ~~~g~y~~L~ 1279 (1288)
++...|.+.+
T Consensus 255 ~p~~~~~~~~ 264 (382)
T TIGR03415 255 NPANDYVADF 264 (382)
T ss_pred CcchHHHHHH
Confidence 7655555443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=376.18 Aligned_cols=224 Identities=35% Similarity=0.492 Sum_probs=187.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--CC
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 454 (1288)
..|+++||+++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999987 699999999999863 45
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCC--CCH---HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 529 (1288)
...+|++++|++|++.+|..|++||+.++... ... +++.++++..++ ..+++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence 66778899999999999988999999976431 111 222223333222 123344566777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeC-----------CE
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-----------GK 597 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~-----------G~ 597 (1288)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999998777899999999999876 999999996 67
Q ss_pred EeEecChhHHhcCCCchH
Q 000777 598 IVEKGTHSKLVEDPEGAY 615 (1288)
Q Consensus 598 i~~~g~~~~l~~~~~~~~ 615 (1288)
+++.|+++++.+.+...|
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 242 LVEFNETKKIFNSPKQKA 259 (269)
T ss_pred EEEeCCHHHHHhCcCChH
Confidence 899999999987644333
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=385.23 Aligned_cols=218 Identities=24% Similarity=0.462 Sum_probs=183.0
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
..|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 3599999999996 356999999999999999999999999999999999999999999999999997654 356789
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
||||||++.++. .|++||+.+.... .+..+.... +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999999999885 6999999863221 222222111 12233333 3433444555789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999864 6899999999999976 999999999999999999998754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=376.13 Aligned_cols=219 Identities=31% Similarity=0.483 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCC--CCCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK--EFQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~--~~~~ 455 (1288)
.|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999987 4999999999987 4455
Q ss_pred HHHhcceEEEcCCCCCCch-hHHHHHhcCCC--CC--CHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKD--DA--TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~--~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
..++++++|++|++.+|.. |++||+.++.. .. ..+ ++.++++..++.+ .+.......+.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence 5678899999999999865 99999987531 11 111 2222233222211 1123356677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChh
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1288)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999876 9999999999999999999
Q ss_pred HHhcCC
Q 000777 606 KLVEDP 611 (1288)
Q Consensus 606 ~l~~~~ 611 (1288)
++.+.+
T Consensus 234 ~~~~~~ 239 (253)
T PRK14267 234 KVFENP 239 (253)
T ss_pred HHHhCC
Confidence 987653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=371.39 Aligned_cols=216 Identities=28% Similarity=0.522 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 68999999996 346999999999999999999999999999999999999999999999999987766544 35899
Q ss_pred EEcCCCCCC-chhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|++|++.++ ..|++||+.++... ....+.. ..+.+.++.+ |++...+..+.+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999874 67999999875321 1221111 1233455555 677777788889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999886 36899999999999877999999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=374.60 Aligned_cols=226 Identities=31% Similarity=0.442 Sum_probs=194.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccCC--CH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQKL--QL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1114 (1288)
.+.+++++++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 3889999999953 3699999999999999999999999999999999999987 799999999998643 44
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC----CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG----GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR 1190 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~----~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQr 1190 (1288)
..+|++++|+||++.+|..|++||+.++.. .....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999986521 11123567888888887655432 2345677899999999
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEe--------CCEEEEe
Q 000777 1191 VAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVK--------NGVIVEK 1261 (1288)
Q Consensus 1191 laiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~--------~G~Ive~ 1261 (1288)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998777899999999999865 99999996 8999999
Q ss_pred cChhhhhcCCCcHHHH
Q 000777 1262 GKHENLINIPDGFYAS 1277 (1288)
Q Consensus 1262 Gt~~eLl~~~~g~y~~ 1277 (1288)
|+++++++++...|.+
T Consensus 238 g~~~~~~~~~~~~~~~ 253 (261)
T PRK14263 238 GPTAQIFQNPREQLTS 253 (261)
T ss_pred CCHHHHHhCCCcHHHH
Confidence 9999998764444433
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=372.20 Aligned_cols=213 Identities=37% Similarity=0.535 Sum_probs=184.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 478999999963 369999999999999999999999999999999999999999999999999987654 368899
Q ss_pred EEccCCCCchh-hHHHHHhcCCC-----CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKG-----GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~g-TIreNl~~g~~-----~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|.+ |++||+.++.. ....++++.++++..++.++... ....||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-----------KPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999975421 01123456667777776655443 345899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1271 (1288)
++++|++|||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 9999999999999999999999999999998764 7899999999999865 9999999999999999999998753
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=376.71 Aligned_cols=221 Identities=32% Similarity=0.490 Sum_probs=187.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1114 (1288)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3699999999999999999999999999999999999974 69999999999853 455
Q ss_pred HHHhcceEEEccCCCCch-hhHHHHHhcCCC--CCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhH
Q 000777 1115 KWLRQQMGLVSQEPVLFN-DTIRANIAYGKG--GDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~-gTIreNl~~g~~--~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1187 (1288)
..+|+.++|++|++.+|. .|++||+.++.. ... .++.+.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999887 599999975311 111 1234566666676654332 23345567899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEe------CCEEEE
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVK------NGVIVE 1260 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~------~G~Ive 1260 (1288)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999998777899999999999864 99999997 899999
Q ss_pred ecChhhhhcCCC
Q 000777 1261 KGKHENLINIPD 1272 (1288)
Q Consensus 1261 ~Gt~~eLl~~~~ 1272 (1288)
.|++++++..+.
T Consensus 234 ~~~~~~~~~~~~ 245 (258)
T PRK14241 234 IDDTEKIFSNPT 245 (258)
T ss_pred cCCHHHHHhCcC
Confidence 999999986533
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=368.32 Aligned_cols=202 Identities=35% Similarity=0.530 Sum_probs=174.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1119 (1288)
|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 2469999999999999999999999999999999999999999999999999987754 35788
Q ss_pred ceEEEccCCCCch-hhHHHHHhcCCC-----CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-----GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~-gTIreNl~~g~~-----~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
+++|+||+|.+|. .|++||+.++.. ....+++++++++..++.++... ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 9999999999885 699999986411 11124566777777777655433 235799999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCE
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGV 1257 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1257 (1288)
||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 47899999999999976 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=367.87 Aligned_cols=202 Identities=38% Similarity=0.638 Sum_probs=172.5
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEE
Q 000777 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1288)
Q Consensus 1044 ~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1123 (1288)
+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCC--CCchhhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1124 VSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1124 V~Qd~--~Lf~gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
+||++ .++..|++||+.++.. ...+ ++++.++++..++.++ +......||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99998 3678899999976421 1122 2234455555555433 334557899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCE
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGV 1257 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1257 (1288)
|+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999875 37899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=373.00 Aligned_cols=214 Identities=29% Similarity=0.471 Sum_probs=186.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCC-chhhHHHHHhcCCCCC-C----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVL-FNDTIRANIAYGKGGD-A----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~L-f~gTIreNl~~g~~~~-~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+ +..|++||+.++.... . .++++.++++..++.++ .......||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998752111 1 13345666666666443 234456899999999999999
Q ss_pred Hc------CCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1197 IV------KDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1197 Ll------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
|+ .+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 47899999999999874 999999999999999999998
Q ss_pred hcC
Q 000777 1268 INI 1270 (1288)
Q Consensus 1268 l~~ 1270 (1288)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=378.57 Aligned_cols=226 Identities=28% Similarity=0.469 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH---HHh
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 459 (1288)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 589999999995 34699999999999999999999999999999999999999999999999998766543 356
Q ss_pred cceEEEcCCCCCCch-hHHHHHhcCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
++++|++|++.+|.. |++||+.++... .+..+... .+.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999875 999999874211 12211111 122234444 5555556677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 236 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPD 236 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCc
Confidence 99999999999999999999999999999998753 6899999999999876 99999999999999999999987543
Q ss_pred chHHHH
Q 000777 613 GAYSQL 618 (1288)
Q Consensus 613 ~~~~~~ 618 (1288)
..+..+
T Consensus 237 ~~~~~~ 242 (269)
T PRK11831 237 PRVRQF 242 (269)
T ss_pred HHHHHH
Confidence 333333
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.39 Aligned_cols=220 Identities=32% Similarity=0.503 Sum_probs=184.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCCCHHH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQW 457 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~ 457 (1288)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 4699999999999999999999999999999999999974 7999999999998877778
Q ss_pred HhcceEEEcCCCCCC-chhHHHHHhcCCCCC----CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 458 IRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA----TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 458 ~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~----~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
+++.|+|++|++.++ ..|++||+.++.... .. +++.++++..++.+ .++......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWD-------EVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCCcccCCHHHH
Confidence 888999999999755 679999998753210 11 12223333332211 112334566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999998
Q ss_pred hcCCC
Q 000777 608 VEDPE 612 (1288)
Q Consensus 608 ~~~~~ 612 (1288)
.+.+.
T Consensus 233 ~~~~~ 237 (250)
T PRK14247 233 FTNPR 237 (250)
T ss_pred HcCCc
Confidence 76543
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=380.65 Aligned_cols=219 Identities=26% Similarity=0.523 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCC--CCCHHHHhc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~ 460 (1288)
.|+++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999952 356999999999999999999999999999999999999999999999999985 334566788
Q ss_pred ceEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
.|+|+||+| .+|+.|++||+.++... .+.++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999875321 222222111 12233434 55555667788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998864 7899999999999975 999999999999999999998764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=375.19 Aligned_cols=223 Identities=30% Similarity=0.506 Sum_probs=190.7
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CceEEECCeeccC--CC
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-----AGHITLDGVEIQK--LQ 1113 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~ 1113 (1288)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 35999999999963 35999999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhcceEEEccCCCCchhhHHHHHhcCCC-----CCC-CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhH
Q 000777 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-----GDA-TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-----~~~-sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1187 (1288)
...+|+.++|+||++.+|..|++||+.++.. +.. .++++.++++..++.+++.. ..+..+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999975310 111 12346667777777655442 2445677899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeC-----CEEE
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKN-----GVIV 1259 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~-----G~Iv 1259 (1288)
|||++|||||+++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999853 47999999999999865 999999999 9999
Q ss_pred EecChhhhhcCCCc
Q 000777 1260 EKGKHENLINIPDG 1273 (1288)
Q Consensus 1260 e~Gt~~eLl~~~~g 1273 (1288)
+.|+++++...+..
T Consensus 236 ~~~~~~~~~~~~~~ 249 (261)
T PRK14258 236 EFGLTKKIFNSPHD 249 (261)
T ss_pred EeCCHHHHHhCCCC
Confidence 99999999876444
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=377.76 Aligned_cols=214 Identities=29% Similarity=0.461 Sum_probs=182.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeecc--CCCHHHHhcc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQQ 1120 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~lR~~ 1120 (1288)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 36999999999999999999999999999999999999999999999999985 3345678899
Q ss_pred eEEEccCCC--CchhhHHHHHhcCCC-CCCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1121 MGLVSQEPV--LFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1121 i~~V~Qd~~--Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
++||||++. +|..|+.+|+.++.. ...+. +++.++++..++.++. ......||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 999999985 677899999976311 11222 2345566666664432 23456899999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||||+.+|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999965 999999999999999999998764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=372.52 Aligned_cols=204 Identities=32% Similarity=0.428 Sum_probs=179.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 36999999999999999999999999999999999999999999999998763 467899
Q ss_pred EEEccCCCCch-hhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
+|++|++.+|. .|++||+.++.. ...++++.++++..++.++ ......+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 699999987522 2235567777777776544 2344578999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1265 (1288)
|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998864 37899999999999865 9999999999999998865
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=375.27 Aligned_cols=226 Identities=29% Similarity=0.467 Sum_probs=192.7
Q ss_pred CccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeecc----
Q 000777 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQ---- 1110 (1288)
Q Consensus 1040 ~g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~---- 1110 (1288)
.+.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|++||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 457999999999963 3699999999999999999999999999999999999875 7999999998874
Q ss_pred CCCHHHHhcceEEEccCCCCchhhHHHHHhcCCC-C-----CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCC
Q 000777 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-G-----DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1111 ~i~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~-----~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1184 (1288)
..+...+|+.++|+||++.+|.+|++||+.++.. . ...++++.++++.+++.+.+ ....+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence 3345678899999999999999999999986421 0 11245667777777765433 233455677899
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 000777 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263 (1288)
Q Consensus 1185 gGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt 1263 (1288)
||||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998777899999999999965 99999999999999999
Q ss_pred hhhhhcCCCcHH
Q 000777 1264 HENLINIPDGFY 1275 (1288)
Q Consensus 1264 ~~eLl~~~~g~y 1275 (1288)
++++...+...|
T Consensus 244 ~~~~~~~~~~~~ 255 (265)
T PRK14252 244 TDTIFIKPKNKQ 255 (265)
T ss_pred HHHHHhCCCCHH
Confidence 999986543333
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=374.08 Aligned_cols=223 Identities=30% Similarity=0.467 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC--C---CCcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 455 (1288)
.|+++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 469999999999999999999999999999999999987 3 69999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCCC---CHHH----HHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
..+++.++|++|++.+|..|++||+.++.... ..++ +.++++..++.+ .+.......+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD-------EVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhhhhCCcccCCHHHH
Confidence 56778999999999999889999998753211 1121 222222222221 112345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999875 999999999999999999998
Q ss_pred hcCCCchH
Q 000777 608 VEDPEGAY 615 (1288)
Q Consensus 608 ~~~~~~~~ 615 (1288)
.+++...|
T Consensus 242 ~~~~~~~~ 249 (259)
T PRK14274 242 FSNPDDQR 249 (259)
T ss_pred hhCCCCHH
Confidence 76544433
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=388.71 Aligned_cols=212 Identities=28% Similarity=0.466 Sum_probs=176.1
Q ss_pred CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe----eCCCCCHHHH---h-cceEEEcCCCC
Q 000777 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWI---R-KKIGLVSQEPV 470 (1288)
Q Consensus 399 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 470 (1288)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 5666655443 3 58999999999
Q ss_pred CCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 000777 471 LFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1288)
Q Consensus 471 l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlD 547 (1288)
+|+ .|++||+.++... .+.++.. ..+.+.++.+ |++......+.+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 997 6999999987421 1221111 1122333433 5554555666799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCCchHHH
Q 000777 548 EATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1288)
Q Consensus 548 Epts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1288)
||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|..
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999999999998864 6899999999999865 9999999999999999999998765555543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=372.97 Aligned_cols=218 Identities=23% Similarity=0.424 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH-Hhcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW-LRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1121 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 889999999963 36999999999999999999999999999999999999999999999999998877544 57899
Q ss_pred EEEccCCCCch-hhHHHHHhcCCC--CCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKG--GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~--~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
+|+||++.+|. .|++||+.+... ...+.++.+ ..+.+++..+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 99999999887 599999986421 111222211 1122333333 4444455667789999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999999998865 47899999999987755 999999999999999999999763
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=383.44 Aligned_cols=214 Identities=30% Similarity=0.472 Sum_probs=181.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3699999999999999999999999999999999999999999999999998654 35678999
Q ss_pred EEEccCCCCch-hhHHHHHhcC-CCCCCCHHH----HHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYG-KGGDATEAE----IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g-~~~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+|+||++.+|. .|++||+.+. .....+..+ +.++++..++.+ .+++ ....||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~----~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADV----RVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcC----chhhCCHHHHHHHHHHH
Confidence 99999998885 6999999742 111223333 333444444332 2333 34579999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999874 47899999999999965 999999999999999999999764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=390.73 Aligned_cols=227 Identities=33% Similarity=0.560 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCC---------------------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 000777 383 DIELRDVYFSYPARP---------------------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~---------------------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 441 (1288)
.|+++||++.|+..+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 367777777775322 12379999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHH----hcceEEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccc
Q 000777 442 EVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT 514 (1288)
Q Consensus 442 ~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t 514 (1288)
+|.++|.++...+...+ +++++||+|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~ 156 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLEN 156 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCh
Confidence 99999999988776543 468999999999986 5999999986321 12211111 122334444 5555
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEE
Q 000777 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIA 591 (1288)
Q Consensus 515 ~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~ 591 (1288)
.......+||||||||++|||||+.+|++|||||||++||+.+++.+++.|.++. .++|+|++||+++.+.. ||+|+
T Consensus 157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence 5566678999999999999999999999999999999999999999999999875 36899999999999865 99999
Q ss_pred EEeCCEEeEecChhHHhcCCCchHH
Q 000777 592 VIHRGKIVEKGTHSKLVEDPEGAYS 616 (1288)
Q Consensus 592 ~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1288)
+|++|++++.|+++++..++...|.
T Consensus 237 vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 237 IMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred EEECCEEEecCCHHHHHhCcccHHH
Confidence 9999999999999999876554443
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=370.95 Aligned_cols=220 Identities=33% Similarity=0.561 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC--------
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-------- 454 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-------- 454 (1288)
.++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999963 46999999999999999999999999999999999999999999999999986532
Q ss_pred HHHHhcceEEEcCCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000777 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
...+++.++||+|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 2456789999999998885 699999986421 112221111 123445555 66666677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998764 6899999999999976 9999999999999999999987
Q ss_pred cCCC
Q 000777 609 EDPE 612 (1288)
Q Consensus 609 ~~~~ 612 (1288)
+.+.
T Consensus 233 ~~~~ 236 (250)
T PRK11264 233 ADPQ 236 (250)
T ss_pred cCCC
Confidence 6543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=369.56 Aligned_cols=214 Identities=29% Similarity=0.483 Sum_probs=190.6
Q ss_pred CCCcccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH
Q 000777 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1288)
Q Consensus 378 ~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 457 (1288)
+...+.|+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 34 ~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---------- 98 (282)
T cd03291 34 SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---------- 98 (282)
T ss_pred CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------
Confidence 3345679999999952 3599999999999999999999999999999999999999999999998
Q ss_pred HhcceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
.|+|++|++.+|+.|++||+.++.. ....++..+++..++.+.+..+|.++++.+++.+.+||||||||++|||||
T Consensus 99 ---~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 99 ---RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV 174 (282)
T ss_pred ---EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH
Confidence 5999999999999999999998643 223345566666778888899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEAL-DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+.+|++|||||||++||+.+...+.+.+ +.+.+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999888754 566667899999999999888999999999999999999998764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=367.74 Aligned_cols=214 Identities=26% Similarity=0.464 Sum_probs=180.2
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH---H
Q 000777 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 458 (1288)
.++++||+|+|+.+. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996322 246999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-cceEEEcCCCCCCch-hHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 459 R-KKIGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 459 r-~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
+ +.++|++|++.+|.. |++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 679999999988864 99999987421 112221111 123344444 666666777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEeEecC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 603 (1288)
||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999875 3689999999999998888999999999998775
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=376.86 Aligned_cols=217 Identities=32% Similarity=0.520 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCC--CCchhHHHHHhcCCC--CCCHHH----HHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 463 GLVSQEPV--LFTGSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
+|++|+|. ++..|+.|||.++.. ....++ +..+++.++ +..........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVN-----------MLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 667899999987532 122222 233333333 33334456679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998864 6899999999999978999999999999999999998764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=364.82 Aligned_cols=199 Identities=29% Similarity=0.522 Sum_probs=168.8
Q ss_pred EEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEE
Q 000777 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1288)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 464 (1288)
+++|++++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 36899999963 1469999999999999999999999999999999999999999999999998854 346678999
Q ss_pred EcCCC--CCCchhHHHHHhcCCCCCC--HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 465 VSQEP--VLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 465 v~Q~~--~l~~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
++|+| .++..|++||+.++.+... .+++.++++.. |++........+||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL-----------DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc-----------CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4678899999998643222 22344444444 344344555679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEe
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 599 (1288)
|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 46899999999999976 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=369.57 Aligned_cols=208 Identities=35% Similarity=0.534 Sum_probs=174.8
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH----HH
Q 000777 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ----WI 458 (1288)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~ 458 (1288)
|+++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996311 14699999999999999999999999999999999999999999999999999876643 24
Q ss_pred hcceEEEcCCCCCCch-hHHHHHhcCCCCC--CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
+++++|++|++.+|.. |++||+.++.... ...+. ...+.+.++.+ |++......+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5789999999998875 9999998864311 11111 11223445555 6666667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEE
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i 598 (1288)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998864 6899999999999878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=371.72 Aligned_cols=223 Identities=34% Similarity=0.530 Sum_probs=185.6
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCC--CC
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 454 (1288)
+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 4699999999999999999999999999999999999763 69999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCCC---CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 527 (1288)
...+|+.++|++|++.+|+.|++||+.++.... .. +++.++++..++.+ ++....+..+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 556788999999999999999999998753211 11 22223333333221 22234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhH
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1288)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999998866 99999999999999999999
Q ss_pred HhcCCCch
Q 000777 607 LVEDPEGA 614 (1288)
Q Consensus 607 l~~~~~~~ 614 (1288)
+...+...
T Consensus 232 ~~~~~~~~ 239 (250)
T PRK14240 232 LFTNPKDK 239 (250)
T ss_pred HHhCCCCh
Confidence 87654433
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=385.95 Aligned_cols=229 Identities=21% Similarity=0.362 Sum_probs=190.4
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC----CCCceEEECCeeccCCCHHHH
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD----PDAGHITLDGVEIQKLQLKWL 1117 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~~~~l 1117 (1288)
|+++||+++|+... ..++|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|++||+++.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999996421 2469999999999999999999999999999999999986 589999999999988876655
Q ss_pred h----cceEEEccCCCC--c-hhhHHHHHhcC---C--CC----C--CCHHHHHHHHHHhchhHHHHhhhccccccccCC
Q 000777 1118 R----QQMGLVSQEPVL--F-NDTIRANIAYG---K--GG----D--ATEAEIQAASEMANAHKFICSLQQGYDTMVGER 1179 (1288)
Q Consensus 1118 R----~~i~~V~Qd~~L--f-~gTIreNl~~g---~--~~----~--~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~ 1179 (1288)
+ ++|+||||+|.. + ..||.+|+... . .. . ..++++.++++.+++.+.-. .....
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhCC
Confidence 3 479999999963 3 35888888531 0 00 0 11345677778777754311 12344
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCC
Q 000777 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNG 1256 (1288)
Q Consensus 1180 G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G 1256 (1288)
...||||||||++|||||+.+|+||||||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999998764 7899999999999965 9999999999
Q ss_pred EEEEecChhhhhcCCCcHHHHHH
Q 000777 1257 VIVEKGKHENLINIPDGFYASLI 1279 (1288)
Q Consensus 1257 ~Ive~Gt~~eLl~~~~g~y~~L~ 1279 (1288)
+|+|.|+++++++++...|.+.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999987777786643
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=383.90 Aligned_cols=230 Identities=31% Similarity=0.483 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCC-------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH
Q 000777 383 DIELRDVYFSYPARP-------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~-------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 455 (1288)
.|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcceEEEcCCCC--CCc-hhHHHHHhcCC---CCCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCCh
Q 000777 456 Q---WIRKKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1288)
Q Consensus 456 ~---~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSg 525 (1288)
. .+|++|+||+|+|. |+. .||.+|+..+. ......+.. ..+.++++.+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 46788999999993 554 48998886421 111221111 1122334444 443 234566789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 526 Gqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
|||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998854 6899999999999976 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHH
Q 000777 603 THSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 603 ~~~~l~~~~~~~~~~~~ 619 (1288)
+.+++++++...|.+..
T Consensus 238 ~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 238 TKEQIFNNPRHPYTQAL 254 (327)
T ss_pred CHHHHhcCCCCHHHHHH
Confidence 99999988777777643
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=367.72 Aligned_cols=211 Identities=28% Similarity=0.472 Sum_probs=182.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCchhhHHHHHhcCC---CCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHc
Q 000777 1122 GLVSQEPVLFNDTIRANIAYGK---GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~gTIreNl~~g~---~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALl 1198 (1288)
+|+||++.+|+.|++||+.++. .....++++.++++..++.+ +.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997531 11112334445555555432 2334566789999999999999999
Q ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEe-CCEEEEecChh
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVK-NGVIVEKGKHE 1265 (1288)
Q Consensus 1199 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~-~G~Ive~Gt~~ 1265 (1288)
++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999998899999995 67778899985
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=375.83 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5999999999973 3699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEccCCCCch-hhHHHHHhcCCCC---------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
+|+||++.+|. .|++||+.++... +..+++++++++..++.++ .......||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHHH
Confidence 99999998874 6999999864211 0122356667776666544 2345678999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
+||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998865 9999999999999999999987
Q ss_pred c
Q 000777 1269 N 1269 (1288)
Q Consensus 1269 ~ 1269 (1288)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=364.85 Aligned_cols=210 Identities=28% Similarity=0.463 Sum_probs=187.1
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH----HHHhc
Q 000777 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQ 1119 (1288)
Q Consensus 1044 ~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~----~~lR~ 1119 (1288)
.+.|+.|+|+.. .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 469999999999999999999999999999999999999999999999998876542 34577
Q ss_pred ceEEEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcC
Q 000777 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr 1199 (1288)
.++|++|+|.+|+.|++||+.+.. ..++++.+++++..++.+++..+|.|+++.++....+||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999998752 245667788889999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHH--HHHHHc-CCceEEEEecCchhhhhcCEEEEEeCCE
Q 000777 1200 DPKILLLDEATSALDAESERVVQD--ALDRVM-KNRTTVVVAHRLSTIKNADMIAVVKNGV 1257 (1288)
Q Consensus 1200 ~p~ILlLDEaTSaLD~~te~~I~~--~L~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1257 (1288)
+|++|||||||++||+.+...+.+ .++... .++|+|++||+.+.+..||++++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999998887 444433 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=372.01 Aligned_cols=228 Identities=28% Similarity=0.450 Sum_probs=192.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECC------eeccCCCHH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG------VEIQKLQLK 1115 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG------~di~~i~~~ 1115 (1288)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4999999999963 3699999999999999999999999999999999999999997666665 677777777
Q ss_pred HHhcceEEEccCCCCchh-hHHHHHhcCCC--CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1116 WLRQQMGLVSQEPVLFND-TIRANIAYGKG--GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~Lf~g-TIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
.+|++++|+||+|.+|.+ |++||+.++.. ....++ .+.++++..++.+++. ...+..+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999975 99999986421 111222 3455666666654331 123455678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++||||++++|++|||||||++||..++..+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877799999999999995 5999999999999999999999
Q ss_pred hcCCCcHHHHHH
Q 000777 1268 INIPDGFYASLI 1279 (1288)
Q Consensus 1268 l~~~~g~y~~L~ 1279 (1288)
.+.+...|.+.+
T Consensus 240 ~~~~~~~~~~~~ 251 (257)
T PRK14246 240 FTSPKNELTEKY 251 (257)
T ss_pred HhCCCcHHHHHH
Confidence 987665566554
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=374.17 Aligned_cols=223 Identities=31% Similarity=0.491 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCCC--H
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQ--L 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~--~ 455 (1288)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 12 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 599999999996 24699999999999999999999999999999999999985 8999999999986432 3
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCC--CCCHHH----HHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 529 (1288)
..+++.++|++|++.+|..|++||+.++.. ....++ +.++++..++.+ .........+.+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 456788999999999999999999987532 122221 222222222211 1123455677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988777899999999999866 9999999999999999999997
Q ss_pred cCCCchH
Q 000777 609 EDPEGAY 615 (1288)
Q Consensus 609 ~~~~~~~ 615 (1288)
+++...|
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 6644444
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=366.28 Aligned_cols=203 Identities=32% Similarity=0.502 Sum_probs=173.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1119 (1288)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 369999999999999999999999999999999999999999999999999987653 35788
Q ss_pred ceEEEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
+++||||++.+|. .|++||+.++.. ...+ ++++.++++..++.+.. .....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-----------RALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHH
Confidence 9999999999987 599999986421 0112 23455666666665433 23345899999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~I 1258 (1288)
||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 57899999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=373.22 Aligned_cols=225 Identities=29% Similarity=0.458 Sum_probs=186.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CceEEECCeeccC--CCHH
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-----AGHITLDGVEIQK--LQLK 1115 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~~~ 1115 (1288)
++++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 5 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 789999999963 46999999999999999999999999999999999999874 8999999999865 3455
Q ss_pred HHhcceEEEccCCCCch-hhHHHHHhcCCC-CCC-CHHHHH----HHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYGKG-GDA-TEAEIQ----AASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~Lf~-gTIreNl~~g~~-~~~-sd~ei~----~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
.+|+.++|+||++.+|. .|++||+.++.. ... .+++.. +.++..++.+.+ +..++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHHH
Confidence 77899999999999887 599999975421 111 233332 233334443322 22233 44568999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999986 999999999999999999999
Q ss_pred hcCCCcHHHH
Q 000777 1268 INIPDGFYAS 1277 (1288)
Q Consensus 1268 l~~~~g~y~~ 1277 (1288)
+.++...|..
T Consensus 235 ~~~~~~~~~~ 244 (252)
T PRK14272 235 FTNPRDERTE 244 (252)
T ss_pred HhCcCcHHHH
Confidence 8765554433
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=374.10 Aligned_cols=230 Identities=26% Similarity=0.440 Sum_probs=190.8
Q ss_pred cEEEEEEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH
Q 000777 1042 EIELHHVSFKYPSR------PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 1115 (1288)
-|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124699999999999999999999999999999999999999999999999999765666
Q ss_pred HHhcceEEEccCCC--Cch-hhHHHHHhcCC--CCC----CCHHHHHHHHHHhchh-HHHHhhhccccccccCCCCCCCh
Q 000777 1116 WLRQQMGLVSQEPV--LFN-DTIRANIAYGK--GGD----ATEAEIQAASEMANAH-KFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1116 ~lR~~i~~V~Qd~~--Lf~-gTIreNl~~g~--~~~----~sd~ei~~al~~a~l~-~~i~~lp~Gldt~vge~G~~LSg 1185 (1288)
..|++++|+||++. ++. -|+.+|+.+.. ... ..++++.++++..++. +.. + ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------S----YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------h----cCchhcCH
Confidence 66788999999985 443 48889886421 001 1234567777777773 221 2 23457999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
|||||++|||||+++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999986 9999999999999999
Q ss_pred ChhhhhcCC-CcHHHHHHHHh
Q 000777 1263 KHENLINIP-DGFYASLIALH 1282 (1288)
Q Consensus 1263 t~~eLl~~~-~g~y~~L~~~~ 1282 (1288)
+++++.+.+ ...+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998764 34566777644
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=373.93 Aligned_cols=213 Identities=28% Similarity=0.434 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEccCCC-CchhhHHHHHhcCCCC---------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHH
Q 000777 1123 LVSQEPV-LFNDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1123 ~V~Qd~~-Lf~gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrla 1192 (1288)
|+||++. .+..|++||+.++... ...++++.++++..++.+. .......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 9999985 4568999999875210 0112345666666665433 33445689999999999
Q ss_pred HHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhc
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 iARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~ 1269 (1288)
||||++.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 3689999999999995 599999999999999999999875
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=368.75 Aligned_cols=212 Identities=36% Similarity=0.557 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++ +++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999973 369999999999999999999999999999999999999999999999999976553 478899
Q ss_pred EEccCCCCchh-hHHHHHhcCCCC-CC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKGG-DA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~g-TIreNl~~g~~~-~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||+|.+|.+ |++||+.++... .. .++++.++++..++.++. .....+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999865210 11 133455556655554432 23446899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
++++|+++||||||++||++++..+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998754 6899999999999865 999999999999999999999865
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.99 Aligned_cols=217 Identities=31% Similarity=0.550 Sum_probs=185.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC--HHHHhcc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIRKK 461 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 461 (1288)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++++
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 68999999996 246999999999999999999999999999999999999999999999999987643 3566788
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
++|++|++.++. .|++||+.++.. ..+..+..+ .+.+.++.+ |++......+.+||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998885 699999987531 112221111 123445555 666666777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999988754 6899999999999976 999999999999999999988765
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=375.43 Aligned_cols=220 Identities=31% Similarity=0.474 Sum_probs=184.1
Q ss_pred EEEEeEEEECCCC------CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH
Q 000777 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1288)
Q Consensus 384 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 457 (1288)
|+++||+|+|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEEcCCCC--CC-chhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHH
Q 000777 458 ---IRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQ 527 (1288)
Q Consensus 458 ---~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq 527 (1288)
+++.|+|++|+|. ++ ..|++||+.++.. .....+. ...+.+.++.+ |++ ...+..+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5678999999983 44 4699999975421 1111111 11123445555 664 34567788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecCh
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1288)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998864 6899999999999975 999999999999999999
Q ss_pred hHHhcC
Q 000777 605 SKLVED 610 (1288)
Q Consensus 605 ~~l~~~ 610 (1288)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=373.05 Aligned_cols=224 Identities=30% Similarity=0.457 Sum_probs=189.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--P---DAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~~ 1114 (1288)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 3899999999973 369999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCC-CCC-----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDA-----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~-~~~-----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQr 1188 (1288)
..+|++++|+||++.+|..|+++|+.++.. ... .++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 567889999999999999999999986411 111 123455566666654333 2234455678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhh
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1189 QrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1267 (1288)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 999999999999999999999
Q ss_pred hcCCCcHH
Q 000777 1268 INIPDGFY 1275 (1288)
Q Consensus 1268 l~~~~g~y 1275 (1288)
..++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14255 235 FLNPKEKE 242 (252)
T ss_pred hcCCCChH
Confidence 87655443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=364.31 Aligned_cols=203 Identities=27% Similarity=0.509 Sum_probs=173.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++|+|++ +++|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999963 46999999999999 99999999999999999999999999999999999987766 66788999
Q ss_pred EEcCCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
|++|++.+|.. |++||+.+... .... +++.++++..++ +........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL-----------GDRAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----------HHHHhCchhhCCHHHHHHHHHHHH
Confidence 99999998875 99999986421 1111 223333443333 333344567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777899999999999975 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=359.80 Aligned_cols=200 Identities=34% Similarity=0.553 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
++++||+++|+...+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999964211 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
|+|++|+|.+|+.|++||+.++.. ...++..++.+.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3445667778888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCE
Q 000777 542 RILLLDEATSALDAESEKVVQE-ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~-~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~ 597 (1288)
+++||||||++||+++.+.+.+ .++.+. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 456554 3689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=373.39 Aligned_cols=222 Identities=32% Similarity=0.536 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC---------
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--------- 454 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--------- 454 (1288)
|+++||+++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 46999999999999999999999999999999999999999999999999986543
Q ss_pred ----HHHHhcceEEEcCCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 455 ----LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 455 ----~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
...+++.++|++|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2356789999999999885 799999987521 112211111 223445555 6666667778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecC
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 603 (1288)
||||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998754 6899999999999865 99999999999999999
Q ss_pred hhHHhcCCCchH
Q 000777 604 HSKLVEDPEGAY 615 (1288)
Q Consensus 604 ~~~l~~~~~~~~ 615 (1288)
++++.+.+...+
T Consensus 231 ~~~~~~~~~~~~ 242 (252)
T TIGR03005 231 PDEIFRQPKEER 242 (252)
T ss_pred HHHHhcCCCcHH
Confidence 999976644333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=380.84 Aligned_cols=213 Identities=23% Similarity=0.466 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999976 4457889999
Q ss_pred EEccCCCCchh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|.+ |++||+.+... ...+ .+++.++++..++.+ .......+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-----------EQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999999975 99999975311 0112 234555555555443 3345567899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|+++|++|||||||++||+.+.+.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999999876 999999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=365.35 Aligned_cols=213 Identities=25% Similarity=0.436 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988653 345677899
Q ss_pred EEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|++|++.++. .|++||+.++.. .....+..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 499999987421 111111111 112333333 444444555679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999988753 6799999999999876 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=366.41 Aligned_cols=199 Identities=29% Similarity=0.505 Sum_probs=169.8
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEE
Q 000777 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1288)
Q Consensus 1044 ~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1123 (1288)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 36999999999999999999999999999999999999999999999998874 46889999
Q ss_pred EccCCCC---chhhHHHHHhcCCCC---------CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1124 VSQEPVL---FNDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1124 V~Qd~~L---f~gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
+||++.+ |+.|++||+.++... ...++++.++++..++.++.. ....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHH
Confidence 9999976 668999999864211 012345666777776655432 33468999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
+|||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 57899999999999966 9999999986 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=366.83 Aligned_cols=209 Identities=29% Similarity=0.417 Sum_probs=177.4
Q ss_pred cEEEEEEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH---H
Q 000777 1042 EIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---L 1117 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l 1117 (1288)
-|+++||+++|++... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 35999999999999999999999999999999999999999999999999998877543 2
Q ss_pred -hcceEEEccCCCCchh-hHHHHHhcCCC-CCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHH
Q 000777 1118 -RQQMGLVSQEPVLFND-TIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR 1190 (1288)
Q Consensus 1118 -R~~i~~V~Qd~~Lf~g-TIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQr 1190 (1288)
+++++|+||++.+|.. |++||+.++.. ... ..+++.++++..++.++.. .....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3689999999998874 99999975310 011 2345666677776655433 2345799999999
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000777 1191 VAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEK 1261 (1288)
Q Consensus 1191 laiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~ 1261 (1288)
++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998743 7899999999999988999999999999874
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=337.78 Aligned_cols=219 Identities=27% Similarity=0.487 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
+++.+++++|++ ...+++|+||+++.||++||.|||||||||++++|..++.|++|.|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999974 3458999999999999999999999999999999999999999999999999865 4556788999
Q ss_pred EEcCCCCCC-chhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000777 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1288)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~ 542 (1288)
+++-+..|+ ..|++|||.|...-....+.+..++ +.+..+.| |++..+..+..++|-|+||||+|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kar---i~~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKAR---IAELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 999777777 5699999998533111111111222 22333444 56666677778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 543 ILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 543 illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+++||||||+||..+.+.+.+.+..++. ++++|+.||.++.++. ||+|+++.+|+++..|+.+++.+.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999876 7999999999999986 999999999999999999988654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=366.51 Aligned_cols=211 Identities=27% Similarity=0.530 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
++++|++++|+.... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999964211 269999999999999999999999999999999999999999999999999875 345667899
Q ss_pred EEEcCCCCCCch-hHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 463 GLVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+|++|++.+|.. |++||+.+.... ...++... .+.+.++.+ |++......+.+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999874 999999864221 11211111 123344554 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999875 46899999999999876 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=375.87 Aligned_cols=215 Identities=28% Similarity=0.505 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccC--CCHHHHhcc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK--LQLKWLRQQ 1120 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~lR~~ 1120 (1288)
|+++||+++|+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2369999999999999999999999999999999999999999999999999852 234568899
Q ss_pred eEEEccCC--CCchhhHHHHHhcCCCC-CCCH----HHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1121 MGLVSQEP--VLFNDTIRANIAYGKGG-DATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1121 i~~V~Qd~--~Lf~gTIreNl~~g~~~-~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
|+|+||+| .+|..|++||+.++... ..+. +++.++++..++.++. ......||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 99999998 57889999999864211 1222 3455666666664332 23356899999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|||++++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999875 999999999999999999998764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=374.01 Aligned_cols=222 Identities=32% Similarity=0.457 Sum_probs=190.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCceEEECCeeccC--CCH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-----DAGHITLDGVEIQK--LQL 1114 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1114 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999963 3699999999999999999999999999999999999864 58999999999864 344
Q ss_pred HHHhcceEEEccCCCCchhhHHHHHhcCCCC-C---CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHH
Q 000777 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-D---ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR 1190 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~-~---~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQr 1190 (1288)
..+|++|+|+||++.+|+.|++||+.++... . ..++++.++++.+++.+.+.. .....+..||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678999999999999989999999875210 0 123455667777777654432 2345567899999999
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEEEEEe---------CCEEEE
Q 000777 1191 VAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVK---------NGVIVE 1260 (1288)
Q Consensus 1191 laiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~---------~G~Ive 1260 (1288)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998778899999999999965 99999997 899999
Q ss_pred ecChhhhhcCCCc
Q 000777 1261 KGKHENLINIPDG 1273 (1288)
Q Consensus 1261 ~Gt~~eLl~~~~g 1273 (1288)
.|+++++...+.-
T Consensus 250 ~g~~~~~~~~~~~ 262 (274)
T PRK14265 250 FSPTEQMFGSPQT 262 (274)
T ss_pred eCCHHHHHhCCCC
Confidence 9999999876443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=374.41 Aligned_cols=221 Identities=33% Similarity=0.514 Sum_probs=186.2
Q ss_pred cccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCC--C
Q 000777 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1288)
Q Consensus 381 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 453 (1288)
.+.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 356999999999963 4699999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
+...+|+.++|++|++.+|..|++||+.++... . .. +++.++++..++.+ .+.+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCHH
Confidence 455678899999999999988999999875321 1 11 12333333333322 1223456778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChh
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1288)
||||++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHhcCC
Q 000777 606 KLVEDP 611 (1288)
Q Consensus 606 ~l~~~~ 611 (1288)
++...+
T Consensus 253 ~~~~~~ 258 (272)
T PRK14236 253 TLFTSP 258 (272)
T ss_pred HHhcCC
Confidence 987653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=374.87 Aligned_cols=219 Identities=31% Similarity=0.529 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 3789999999963 24599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCC--CCCchhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 463 GLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
+||+|+| .+|..|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+..||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 3678899999987532 122221111 112233333 3433445566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999998764 6899999999999865 999999999999999999999764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=369.07 Aligned_cols=219 Identities=22% Similarity=0.385 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 461 (1288)
.++++|++++|+. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999962 46999999999999999999999999999999999999999999999999998877543 6778
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
++|++|++.+|. .|++||+.++......++.... +.+.++.++ +++........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999987 4999999876432222222111 112222222 122223456779999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998754 7899999999998765 999999999999999999998643
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=384.03 Aligned_cols=214 Identities=29% Similarity=0.476 Sum_probs=182.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 36999999999999999999999999999999999999999999999999997654 5688999
Q ss_pred EEEccCCCCc-hhhHHHHHhcCC-CCCCCHHH----HHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLF-NDTIRANIAYGK-GGDATEAE----IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf-~gTIreNl~~g~-~~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
+|+||++.+| ..|++||+.+.. ....+.++ +.++++..++ ++..++. ..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~----~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADAR----VSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCC----hhhCCHHHHHHHHHHH
Confidence 9999999886 579999997421 11122222 3334444443 2233444 4579999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||+.+|++|||||||++||+.+...+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 47899999999999976 999999999999999999999764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=372.82 Aligned_cols=224 Identities=33% Similarity=0.502 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 455 (1288)
.|+++|++|+|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999999864 334
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-CHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
..+++.++|++|++.+|..|++||+.++... . ..+ ++..+++..++++ +.....+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 5677889999999999999999999875321 1 111 1222222222210 011234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999876 999999999999999999998
Q ss_pred hcCCCchHH
Q 000777 608 VEDPEGAYS 616 (1288)
Q Consensus 608 ~~~~~~~~~ 616 (1288)
...+...|.
T Consensus 234 ~~~~~~~~~ 242 (251)
T PRK14251 234 FIAPKKQIT 242 (251)
T ss_pred HhCCCCHHH
Confidence 765444343
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=384.18 Aligned_cols=231 Identities=23% Similarity=0.410 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCeeCCCCCHHHH
Q 000777 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWI 458 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 458 (1288)
.++++|++++|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996322 246999999999999999999999999999999999999996 9999999999998876654
Q ss_pred ---h-cceEEEcCCC--CCCc-hhHHHHHhcCC---CCCCHHHHHHHHHHcCHHHHHH--hCCCCccccccCCCCCCChH
Q 000777 459 ---R-KKIGLVSQEP--VLFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFID--KLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 459 ---r-~~i~~v~Q~~--~l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~g~~LSgG 526 (1288)
| +.|+||||+| .++. .|+.+|+.... ...+.++..+. +.+.++ .+|++. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4899999998 3543 47777775321 11222222111 111222 234322 3367788999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecC
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 603 (1288)
||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|++.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998865 6899999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHHHHH
Q 000777 604 HSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 604 ~~~l~~~~~~~~~~~~ 619 (1288)
++++.+++...|.+..
T Consensus 246 ~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 246 ARDVFYQPSHPYSIGL 261 (330)
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999988777887643
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=362.35 Aligned_cols=202 Identities=30% Similarity=0.494 Sum_probs=174.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999632 2 39999999999999999999999999999999999999999999999977654 467899
Q ss_pred EEccCCCCchh-hHHHHHhcCCCCC-----CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~g-TIreNl~~g~~~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|.+ |++||+.++.... .+++++.++++..++.++.... ...||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHH
Confidence 99999999975 9999998652211 1345677788877776554332 35799999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
++++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999966 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=373.19 Aligned_cols=221 Identities=26% Similarity=0.441 Sum_probs=183.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHH-hcc
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-RQQ 1120 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~ 1120 (1288)
-++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEccCCCCchh-hHHHHHhcCCCCC--------------CCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCCh
Q 000777 1121 MGLVSQEPVLFND-TIRANIAYGKGGD--------------ATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~g-TIreNl~~g~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1185 (1288)
++|+||++.+|.+ |++||+.++.... ..++ ..+. ...+.++++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRA-ESEA--LDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccc-hhHH--HHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999975 9999998752100 0000 0000 01122333332 455555667789999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
|||||++||||++.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999998753 6899999999999866 9999999999999999
Q ss_pred ChhhhhcC
Q 000777 1263 KHENLINI 1270 (1288)
Q Consensus 1263 t~~eLl~~ 1270 (1288)
+++++...
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99998764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=379.11 Aligned_cols=221 Identities=30% Similarity=0.523 Sum_probs=189.8
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCceEEECCeeccC--CC
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQK--LQ 1113 (1288)
Q Consensus 1041 g~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1113 (1288)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999964 369999999999999999999999999999999999986 689999999999865 34
Q ss_pred HHHHhcceEEEccCCCCchhhHHHHHhcCCCC------------------CCCHHHHHHHHHHhchhHHHHhhhcccccc
Q 000777 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG------------------DATEAEIQAASEMANAHKFICSLQQGYDTM 1175 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~gTIreNl~~g~~~------------------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ 1175 (1288)
...+|++++|+||++.+|++|++||+.++... ...++++.++++.+++.+. +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 66788999999999999999999999864210 0113345666666665433 3344
Q ss_pred ccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhh-cCEE-EEE
Q 000777 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMI-AVV 1253 (1288)
Q Consensus 1176 vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~DrI-~vl 1253 (1288)
++..+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56778899999999999999999999999999999999999999999999998777899999999999865 9997 567
Q ss_pred eCCEEEEecChhhhhcCC
Q 000777 1254 KNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1254 ~~G~Ive~Gt~~eLl~~~ 1271 (1288)
++|++++.|+++++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 274 TGGELVEYDDTDKIFENP 291 (305)
T ss_pred cCCEEEEeCCHHHHHhCc
Confidence 999999999999998653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=376.53 Aligned_cols=220 Identities=33% Similarity=0.576 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCC----CHHH
Q 000777 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1288)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 457 (1288)
|+++||+++|++.. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhcceEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000777 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 532 (1288)
+|+.|+|++|++ .+|+.|++||+.++... .+.++..+. +.+.++.+ |++ ......+.+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 57888999999875321 222222211 12334444 554 3456777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 533 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998754 6899999999999865 999999999999999999988654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=383.43 Aligned_cols=230 Identities=27% Similarity=0.393 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC----CCCcEEEECCeeCCCCCHHH
Q 000777 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQW 457 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 457 (1288)
-++++|++++|+.+.. ..+|+||||+|++||+++|||+||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999964322 469999999999999999999999999999999999997 48999999999998887665
Q ss_pred Hh----cceEEEcCCCC--CCc-hhHHHHHhcCC---CCCCHHHHHHHHHHcCHHHHHHhCCCCcc---ccccCCCCCCC
Q 000777 458 IR----KKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID---TLVGEHGTQLS 524 (1288)
Q Consensus 458 ~r----~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~~g~~LS 524 (1288)
++ +.|+||||+|. ++. .|+.+++.... .....++..+ .+.+.++.+ |++ ...+..+.+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~-----~~~~~L~~~--gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQ-----RAIDLLNQV--GIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhCCchhCC
Confidence 43 37999999995 342 36665554211 0112111111 122334443 443 34567788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEe
Q 000777 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1288)
Q Consensus 525 gGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 601 (1288)
|||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999864 6899999999999965 999999999999999
Q ss_pred cChhHHhcCCCchHHHHH
Q 000777 602 GTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 602 g~~~~l~~~~~~~~~~~~ 619 (1288)
|+++++.+++...|.+.+
T Consensus 236 g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCHHHHhhCCCChHHHHH
Confidence 999999988777776543
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=372.16 Aligned_cols=223 Identities=35% Similarity=0.515 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcC---CCC--CCcEEEECCeeCCCC--CH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDP--QAGEVLIDGINLKEF--QL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~---~~~--~~G~i~~~g~~~~~~--~~ 455 (1288)
.++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 4699999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-CHHHHHHHHHHcCHHHHHHhC--CCCccccccCCCCCCChHHHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
..+++.++|+||++.+|..|++||+.++... . ..++.... +.+.++.+ ++.+.+.....+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5677899999999999988999999875321 1 11111111 11223322 1122344567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999998777899999999999865 99999999999999999999987
Q ss_pred CCCc
Q 000777 610 DPEG 613 (1288)
Q Consensus 610 ~~~~ 613 (1288)
++..
T Consensus 235 ~~~~ 238 (250)
T PRK14245 235 NPEK 238 (250)
T ss_pred CCCC
Confidence 6443
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=373.31 Aligned_cols=221 Identities=30% Similarity=0.481 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 455 (1288)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 21 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 599999999996 3469999999999999999999999999999999999864 799999999999864 334
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCCC---CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
..++++++|++|++.+|..|++||+.++.... .. +.+.++++..++. .++....+..+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 46778999999999999899999998753211 11 1122222222211 1112345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998865 999999999999999999998
Q ss_pred hcCCCc
Q 000777 608 VEDPEG 613 (1288)
Q Consensus 608 ~~~~~~ 613 (1288)
..++..
T Consensus 251 ~~~~~~ 256 (268)
T PRK14248 251 FTSPKQ 256 (268)
T ss_pred HhCCCC
Confidence 765443
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=370.48 Aligned_cols=224 Identities=29% Similarity=0.472 Sum_probs=185.5
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC--C---CCcEEEECCeeCCCC--C
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKEF--Q 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~~--~ 454 (1288)
+.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 5699999999996 2469999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhcceEEEcCCCCCCc-hhHHHHHhcCCCC---CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
...+++.++|+||++.+|. .|++||+.++... .+. +++.++++..++.+. +....+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE-------VKDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcCcCCHH
Confidence 4567889999999999887 6999999875221 111 122233333332221 122345677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChh
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1288)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHhcCCCchH
Q 000777 606 KLVEDPEGAY 615 (1288)
Q Consensus 606 ~l~~~~~~~~ 615 (1288)
++...+...|
T Consensus 233 ~~~~~~~~~~ 242 (252)
T PRK14256 233 KIFTTPEKKQ 242 (252)
T ss_pred HHHhCCCcHH
Confidence 9977654443
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=372.88 Aligned_cols=222 Identities=30% Similarity=0.481 Sum_probs=186.6
Q ss_pred cccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--C
Q 000777 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--F 453 (1288)
Q Consensus 381 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 453 (1288)
...|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 18 ~~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 34699999999995 3569999999999999999999999999999999999996 589999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChH
Q 000777 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1288)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 526 (1288)
+...+++.|+|+||++.+|..|++||+.++... . .. +++.++++..++.+ ++++..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHH
Confidence 455678899999999999989999999875321 1 11 12222333333221 2234567788899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChh
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1288)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHhcCCC
Q 000777 606 KLVEDPE 612 (1288)
Q Consensus 606 ~l~~~~~ 612 (1288)
++...+.
T Consensus 248 ~~~~~~~ 254 (267)
T PRK14237 248 NIFTNPK 254 (267)
T ss_pred HHhcCCC
Confidence 9876533
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=373.66 Aligned_cols=220 Identities=30% Similarity=0.596 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++|++++|++ .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 5899999999963 235799999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
+|++|+| .++..|++||+.++... .+.++... .+.+.++.+ |++........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 35577999999875321 22222211 122334444 5555556677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998764 4799999999999878999999999999999999888654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=365.86 Aligned_cols=210 Identities=32% Similarity=0.505 Sum_probs=182.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|+. . ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999977654 357899
Q ss_pred EEccCCCCchh-hHHHHHhcCCCC-----CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~g-TIreNl~~g~~~-----~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|.+ |++||+.++... ...++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 999999864211 112456777888888766654433 4799999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999865 999999999999999999999875
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=371.44 Aligned_cols=222 Identities=31% Similarity=0.456 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 455 (1288)
.|+++||+++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 469999999999999999999999999999999999986 489999999999853 345
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCCC--C---HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
..++++|+|++|++.+|+.|++||+.++.... . .+++.++++.+++.+.+ +...+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 66788999999999999889999998764311 1 12233334444443322 223466778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe---------CCEEeE
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH---------RGKIVE 600 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~---------~G~i~~ 600 (1288)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999999876 99999998 899999
Q ss_pred ecChhHHhcCCCch
Q 000777 601 KGTHSKLVEDPEGA 614 (1288)
Q Consensus 601 ~g~~~~l~~~~~~~ 614 (1288)
.|+++++.+.+...
T Consensus 240 ~~~~~~~~~~~~~~ 253 (264)
T PRK14243 240 FDRTEKIFNSPQQQ 253 (264)
T ss_pred eCCHHHHHhCCCcH
Confidence 99999998764433
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.38 Aligned_cols=205 Identities=30% Similarity=0.461 Sum_probs=174.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH---HHhc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 1119 (1288)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999877644 3788
Q ss_pred ceEEEccCCCC-chhhHHHHHhcCCC-CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1120 QMGLVSQEPVL-FNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1120 ~i~~V~Qd~~L-f~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
.++|+||+|.+ +..|++||+.++.. ...+++ ++.++++..++.++. ......||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHH
Confidence 99999999986 46799999986421 112332 345556665554432 33456899999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVE 1260 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive 1260 (1288)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 46899999999999976 89999999999853
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=374.88 Aligned_cols=218 Identities=33% Similarity=0.588 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC-HHHHhcce
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 462 (1288)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999952 346999999999999999999999999999999999999999999999999998765 35677899
Q ss_pred EEEcCCCC--CCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
+|++|+|. ++..|++|||.++... .+..+..+. +.+.++.+ |++......+.+||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5678999999876322 222222111 12334444 5555566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+|+||||||||++||+.++..+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999988754 7899999999999977999999999999999999988654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=369.07 Aligned_cols=221 Identities=24% Similarity=0.448 Sum_probs=187.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhcce
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 462 (1288)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 46999999999999999999999999999999999999999999999999998776654 35679
Q ss_pred EEEcCCCCCCch-hHHHHHhcCCCCCCH--HH---HHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 463 GLVSQEPVLFTG-SIKDNIAYGKDDATT--EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
+|++|++.+|.+ |++||+.++...... .. .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999976 999999875321000 00 00001111234455555 66666778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998777899999999999976 99999999999999999988864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=361.99 Aligned_cols=203 Identities=26% Similarity=0.458 Sum_probs=173.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 47899999995 34699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEcCCCCCC-chhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
||+|++.++ +.|++||+.++.. ..+.+++.++++..++. ......+.+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-----------DSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-----------HHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 5799999987532 12334444454544443 334455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999988764 6899999999999876 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=371.37 Aligned_cols=221 Identities=29% Similarity=0.456 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCC--CC---CCcEEEECCeeCCCC--CH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DP---QAGEVLIDGINLKEF--QL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~--~~---~~G~i~~~g~~~~~~--~~ 455 (1288)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 46999999999999999999999999999999999995 36 599999999998643 34
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
..+++.++||||++.+|+.|++||+.++... . .. +++.++++..++.+ ++.+..+..+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 5677889999999999999999999875211 1 11 11222233322211 123445677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999998865 999999999999999999999
Q ss_pred hcCCCc
Q 000777 608 VEDPEG 613 (1288)
Q Consensus 608 ~~~~~~ 613 (1288)
.+.+..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14239 235 FMNPKH 240 (252)
T ss_pred HhCCCC
Confidence 766443
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=349.99 Aligned_cols=172 Identities=40% Similarity=0.712 Sum_probs=162.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 246999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEccCCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCC
Q 000777 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202 (1288)
Q Consensus 1123 ~V~Qd~~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ 1202 (1288)
|++|++.+|++|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 80 YLPQDDELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred EECCCCccccCcHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999997 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhhcCEEEEEeCCEE
Q 000777 1203 ILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKNADMIAVVKNGVI 1258 (1288)
Q Consensus 1203 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~I 1258 (1288)
+|||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999999875 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=372.52 Aligned_cols=220 Identities=31% Similarity=0.554 Sum_probs=184.9
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCC--------
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-------- 453 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-------- 453 (1288)
+.++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999963 4699999999999999999999999999999999999999999999999988542
Q ss_pred -----CHHHHhcceEEEcCCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCccccc-cCCCCCC
Q 000777 454 -----QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQL 523 (1288)
Q Consensus 454 -----~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~L 523 (1288)
....++++++|+||++.+|. .|++||+.++.. .....+... .+.+.++.+ |+.... ...+.+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccC
Confidence 13456789999999999986 599999986421 111111111 122344554 555543 6677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEe
Q 000777 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1288)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 601 (1288)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999998864 7899999999999986 999999999999999
Q ss_pred cChhHHhcCC
Q 000777 602 GTHSKLVEDP 611 (1288)
Q Consensus 602 g~~~~l~~~~ 611 (1288)
|+++++...+
T Consensus 234 ~~~~~~~~~~ 243 (257)
T PRK10619 234 GAPEQLFGNP 243 (257)
T ss_pred CCHHHhhhCc
Confidence 9999987653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=377.18 Aligned_cols=221 Identities=29% Similarity=0.552 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCC----CHH
Q 000777 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~ 456 (1288)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 24699999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhcceEEEcCCC--CCCchhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 000777 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 457 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 531 (1288)
..++.|+|++|+| .+|..|++|||.++.. ....++..+ .+.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 5677899999998 5778899999987532 122222211 123344554 665 345677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 532 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999885 46899999999999865 99999999999999999998865
Q ss_pred C
Q 000777 610 D 610 (1288)
Q Consensus 610 ~ 610 (1288)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=369.44 Aligned_cols=221 Identities=31% Similarity=0.510 Sum_probs=185.7
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCeeCCCC--C
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--Q 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~ 454 (1288)
+.++++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 35899999999963 46999999999999999999999999999999999999997 69999999998643 3
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCC--CC-HHH----HHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-TEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 527 (1288)
...+|+.++||+|++.+|+.|++||+.++... .. .++ +.++.+..++. +++....+..+.+|||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW-------DEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCc-------hhhhhHhhCCcccCCHHH
Confidence 45678899999999999989999999876321 11 111 22222222222 123344667888999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhH
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1288)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999988667899999999999876 89999999999999999999
Q ss_pred HhcCCC
Q 000777 607 LVEDPE 612 (1288)
Q Consensus 607 l~~~~~ 612 (1288)
+...+.
T Consensus 233 ~~~~~~ 238 (251)
T PRK14249 233 IFSRPR 238 (251)
T ss_pred HHhCCC
Confidence 876543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=373.11 Aligned_cols=223 Identities=26% Similarity=0.467 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 455 (1288)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 469999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCC--CCCHH-HHHHHHHHcCHHHHHHhC--CCCccccccCCCCCCChHHHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTE-EIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~-~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
..+++.++|++|++.+|..|++||+.++.. ...++ ..... +.+.++.+ .+++....+..+.+||||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-----VEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 567889999999999998899999987532 11111 11111 11112221 1233445567888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777899999999999876 99999999999999999999976
Q ss_pred CCCc
Q 000777 610 DPEG 613 (1288)
Q Consensus 610 ~~~~ 613 (1288)
++..
T Consensus 256 ~~~~ 259 (271)
T PRK14238 256 NPSD 259 (271)
T ss_pred CCCC
Confidence 6443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=373.64 Aligned_cols=213 Identities=28% Similarity=0.473 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCCC-------C---HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 531 (1288)
+|++|++.++. .|++||+.++.... . .+++..+++..++ +........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-----------KPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----------HHHhcCCcccCCHHHHHHH
Confidence 99999987665 59999999753210 1 1223334444433 3334455578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 532 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
+|||||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999998853 6899999999999865 9999999999999999998876
Q ss_pred c
Q 000777 609 E 609 (1288)
Q Consensus 609 ~ 609 (1288)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=378.15 Aligned_cols=222 Identities=28% Similarity=0.502 Sum_probs=183.7
Q ss_pred ccEEEEeEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC----C-C
Q 000777 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----F-Q 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~-~ 454 (1288)
+.|+++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5799999999996432 1359999999999999999999999999999999999999999999999999852 2 3
Q ss_pred HHHHhcceEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHH
Q 000777 455 LQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkq 529 (1288)
...+|+.|+|++|+| .+|..|++||+.++... ...++..+. +.+.++.+ |+. ...+..+.+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456788999999998 46778999999876321 222222111 12233333 442 3456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhH
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1288)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 6899999999999865 99999999999999999998
Q ss_pred HhcC
Q 000777 607 LVED 610 (1288)
Q Consensus 607 l~~~ 610 (1288)
+.+.
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=369.96 Aligned_cols=228 Identities=28% Similarity=0.458 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCee-----ccCCCHHH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE-----IQKLQLKW 1116 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~~~~ 1116 (1288)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 369999999999999999999999999999999999999999999999998 87766544
Q ss_pred ----HhcceEEEccCCC--Cc-hhhHHHHHhcCC--CCCCCHHHHHHHHHHhchhHHHHhhhcccc-ccccCCCCCCChh
Q 000777 1117 ----LRQQMGLVSQEPV--LF-NDTIRANIAYGK--GGDATEAEIQAASEMANAHKFICSLQQGYD-TMVGERGLQLSGG 1186 (1288)
Q Consensus 1117 ----lR~~i~~V~Qd~~--Lf-~gTIreNl~~g~--~~~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgG 1186 (1288)
+|+.++||||++. ++ ..|+.+|+.+.. .......++.+ .+.+++..+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3667999999984 33 357888885321 00111122211 123444444 232 3456778899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt 1263 (1288)
||||++|||||+++|+||||||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998754 7899999999999975 99999999999999999
Q ss_pred hhhhhcCCCcHHHHHH
Q 000777 1264 HENLINIPDGFYASLI 1279 (1288)
Q Consensus 1264 ~~eLl~~~~g~y~~L~ 1279 (1288)
++++..++...|.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 236 TDQVLDDPQHPYTQLL 251 (258)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999876555565443
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=365.71 Aligned_cols=213 Identities=35% Similarity=0.540 Sum_probs=173.6
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH---HHHh
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR 1118 (1288)
|+++||+++|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1269999999999999999999999999999999999999999999999999987763 5788
Q ss_pred cceEEEccCC--CCc-hhhHHHHHhcCCC---CCCCHHHHHHHHHHhchhHHHHhhhcccc-ccccCCCCCCChhHHHHH
Q 000777 1119 QQMGLVSQEP--VLF-NDTIRANIAYGKG---GDATEAEIQAASEMANAHKFICSLQQGYD-TMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1119 ~~i~~V~Qd~--~Lf-~gTIreNl~~g~~---~~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgGQrQrl 1191 (1288)
++++|+||++ .++ ..|+++|+.++.. ....+++...+. .+.+..+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 5799999975311 111112111110 1222222 232 234556678999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G 1262 (1288)
+|||||+.+|++|||||||++||+++...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 789999999999997 59999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=368.55 Aligned_cols=218 Identities=23% Similarity=0.455 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 461 (1288)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999998776544 5678
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
++|++|++.+|. .|++||+.++... .+.++. ...+.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999998887 5999999875321 111111 11233456666 666667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999988754 7899999999988865 999999999999999999988653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=375.26 Aligned_cols=217 Identities=26% Similarity=0.488 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCC---CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCC-HHHH
Q 000777 383 DIELRDVYFSYPARP---NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWI 458 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 458 (1288)
-++++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999996421 246999999999999999999999999999999999999999999999999987643 3456
Q ss_pred hcceEEEcCCCC--CCchhHHHHHhcCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000777 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
++.++|+||+|. ++..|+.+|+.|+... .+. +++.++++.. |+.........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV-----------GMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHH
Confidence 789999999984 6777999999986321 122 2233333333 44444555667999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHh
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999998853 68999999999998779999999999999999999987
Q ss_pred cC
Q 000777 609 ED 610 (1288)
Q Consensus 609 ~~ 610 (1288)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=373.95 Aligned_cols=221 Identities=30% Similarity=0.547 Sum_probs=186.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC---cEEEECCeeCCCCCHHHH
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWI 458 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 458 (1288)
+.|+++|++|+|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999632 3469999999999999999999999999999999999999998 899999999987777777
Q ss_pred hcceEEEcCCCC--CCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
+++|+||+|+|. +++.|++|||.++.+. .+.++..+ .+.+.++.+ |+....+....+||||||||++||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence 889999999984 5678999999876332 22222111 112223333 444455666689999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 6899999999999877999999999999999999988764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=365.51 Aligned_cols=209 Identities=35% Similarity=0.517 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
|+++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996311 1469999999999999999999999999999999999999999999999998863 35689
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+||+|++.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999887 6999999875321 1111111 1122344444 55555566678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEe--CCEEeEecCh
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH--RGKIVEKGTH 604 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~--~G~i~~~g~~ 604 (1288)
+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999874 36899999999998865 99999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=366.68 Aligned_cols=214 Identities=26% Similarity=0.494 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhcce
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 462 (1288)
|+++||++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999963 46999999999999999999999999999999999999999999999999998776544 46789
Q ss_pred EEEcCCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
+|++|++.+|.. |++||+.++.......+ .+. ..+.++.+ ++++........+||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999875 99999987643221110 000 11122222 12334456677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998764 6899999999999986 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=382.87 Aligned_cols=217 Identities=27% Similarity=0.506 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|+ ++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|+++...+ ...++.|
T Consensus 41 ~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 599999999996 346999999999999999999999999999999999999999999999999987644 4577899
Q ss_pred EEEcCCCCCC-chhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
||+||++.++ ..|++||+.+... .....+..+.+ .+.++.+ |++........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999887 5699999985321 11222221111 1233333 44444555667999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999998854 6899999999999976 999999999999999999998754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=361.96 Aligned_cols=202 Identities=23% Similarity=0.458 Sum_probs=171.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 369999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccCCCCchh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|.+ |++||+.+... ...+ ++++.++++..++.+ .......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHH
Confidence 99999999874 99999975311 0111 233444555544433 3344567899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1262 (1288)
++.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 46899999999999865 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=370.37 Aligned_cols=213 Identities=28% Similarity=0.446 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC--------CceEEECCeeccCCCH
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD--------AGHITLDGVEIQKLQL 1114 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~--------~G~I~idG~di~~i~~ 1114 (1288)
|+++|++++|.+ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 36999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEccCCC-CchhhHHHHHhcCCCCC------C---CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCC
Q 000777 1115 KWLRQQMGLVSQEPV-LFNDTIRANIAYGKGGD------A---TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1115 ~~lR~~i~~V~Qd~~-Lf~gTIreNl~~g~~~~------~---sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1184 (1288)
..+|+.++|+||++. +|..|++||+.++.... . .++.++++++..++ ++.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCC
Confidence 888889999999986 67899999998752111 1 12234555555544 444556677899
Q ss_pred hhHHHHHHHHHHHc---------CCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEE
Q 000777 1185 GGQKQRVAIARAIV---------KDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAV 1252 (1288)
Q Consensus 1185 gGQrQrlaiARALl---------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~v 1252 (1288)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998754 689999999999996 4999999
Q ss_pred EeCCEEEEecChhhhhc
Q 000777 1253 VKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1253 l~~G~Ive~Gt~~eLl~ 1269 (1288)
|++|+|++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999975
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=369.85 Aligned_cols=225 Identities=28% Similarity=0.479 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCC--CH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 455 (1288)
.|+++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 489999999996 34699999999999999999999999999999999999763 489999999999765 44
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCCC---CHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
...++.++|++|++.+|+.|++||+.++.... ... ++.++++..++ .+++.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL-------WDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcC-------chhhHHHhhcChhhCCHHHH
Confidence 56778899999999999899999999863211 111 12222222222 22333456778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999975 999999999999999999998
Q ss_pred hcCCCchHHH
Q 000777 608 VEDPEGAYSQ 617 (1288)
Q Consensus 608 ~~~~~~~~~~ 617 (1288)
.+.+...+.+
T Consensus 236 ~~~~~~~~~~ 245 (253)
T PRK14261 236 FENPHEELTE 245 (253)
T ss_pred HhCCCcHHHH
Confidence 7654433443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=368.79 Aligned_cols=220 Identities=32% Similarity=0.489 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCC--CH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 455 (1288)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 589999999996 24699999999999999999999999999999999999875 799999999998643 34
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCCC---CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
...++.++|+||++.+|..|++||+.++.... .. +++.++++.+++.+ ++.......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 46678899999999999999999998753211 11 12223333333221 222345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999876 999999999999999999998
Q ss_pred hcCCC
Q 000777 608 VEDPE 612 (1288)
Q Consensus 608 ~~~~~ 612 (1288)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14270 234 FLEPQ 238 (251)
T ss_pred hcCCC
Confidence 76543
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=364.23 Aligned_cols=209 Identities=29% Similarity=0.523 Sum_probs=175.1
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH---Hh
Q 000777 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1288)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 459 (1288)
++++||+++|+... .+++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 246999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cceEEEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
+.++|++|++.+|. .|++||+.++.. .....+..+ .+.++++.+ |++......+.+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 68999999999885 699999987421 111111111 122345555 6666667777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEe
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 599 (1288)
||+++|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999998853 68999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=379.97 Aligned_cols=217 Identities=25% Similarity=0.454 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999962 4699999999999999999999999999999999999999999999999998653 34567899
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
+|+||++.++. .|++||+.+... ..+..+....+ .+.++.+ |+.........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999998884 699999975321 12222222111 1233333 44444556667999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 46899999999999976 999999999999999999998654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=367.49 Aligned_cols=205 Identities=32% Similarity=0.457 Sum_probs=175.7
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999963 46999999999999999999999999999999999999999999999998763 45678
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
++|++|++.+|. .|++||+.++.....++++.++ ++.+ |+.......+.+||||||||++|||||+++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~---------l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA---------LAAV--GLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH---------HHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999886 6999999986432112233333 3333 454455667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChh
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1288)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998874 36899999999999865 9999999999999988765
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=364.47 Aligned_cols=212 Identities=33% Similarity=0.558 Sum_probs=183.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++|++++|++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 478999999962 37999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEccCCCCch-hhHHHHHhcCCC-CCC----CHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|. .|++||+.++.. ... .++++.++++..++.+++. .....||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHH
Confidence 9999999885 799999986421 111 2334566677777665543 3345799999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1271 (1288)
++++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999998753 7899999999999875 9999999999999999999998754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=378.94 Aligned_cols=216 Identities=22% Similarity=0.440 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3569999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEcCCCCCCch-hHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|+||++.++.. |++||+.+.... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999865 999999863211 11121111 123445555 666667778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|++|||||||++||+.+.+.+++.++++.+++|+|++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999999876 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=384.45 Aligned_cols=212 Identities=28% Similarity=0.460 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCC----CHHHHh
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKWLR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~lR 1118 (1288)
|++ ||+++|.+ . .+ |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999963 2 23 99999999999999999999999999999999999999999999998653 245578
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHH
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARAL 1197 (1288)
++++||||++.+|. .|++||+.++.. ...++++.++++..++.++.. ....+||||||||++|||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHH
Confidence 89999999999996 699999998632 334567777888777755443 34468999999999999999
Q ss_pred cCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCC
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272 (1288)
Q Consensus 1198 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1272 (1288)
+++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 999999999999999999999999999998764 6899999999998865 99999999999999999999998765
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=370.82 Aligned_cols=222 Identities=32% Similarity=0.541 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCCCC--HH
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQ--LQ 456 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~ 456 (1288)
-+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 47899999995 3469999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhcceEEEcCCCCCCchhHHHHHhcCCC--CC--CHHHHHHHHHHcCHHHHHHhCCCCcc----ccccCCCCCCChHHH
Q 000777 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA--TTEEIRVATELANAAKFIDKLPQGID----TLVGEHGTQLSGGQK 528 (1288)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~~----t~~~~~g~~LSgGqk 528 (1288)
.+|+.++|+||++.+|..|++||+.++.. .. ...+... .+.+.++.+ |+. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVEKSLTSV--GLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCCchhhhHhhcChhhCCHHHH
Confidence 56789999999999998899999987521 11 1111111 112223333 332 345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999999
Q ss_pred hcCCCchH
Q 000777 608 VEDPEGAY 615 (1288)
Q Consensus 608 ~~~~~~~~ 615 (1288)
.+.+...+
T Consensus 236 ~~~~~~~~ 243 (251)
T PRK14244 236 FKNPQSSK 243 (251)
T ss_pred hcCCCChH
Confidence 87654433
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=368.82 Aligned_cols=224 Identities=32% Similarity=0.518 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCC--CH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 455 (1288)
.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeC---CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 489999999996 24699999999999999999999999999999999999984 899999999998653 23
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCC---CCHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
..+++.++|++|++.+|..|++||+.++... ...+ ++.++++..++.+. ++...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE-------VKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch-------hHHHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 1111 12233333332211 12345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998765 999999999999999999998
Q ss_pred hcCCCchHH
Q 000777 608 VEDPEGAYS 616 (1288)
Q Consensus 608 ~~~~~~~~~ 616 (1288)
.+.+...+.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14262 233 VERPKNKLT 241 (250)
T ss_pred HhCCCChHH
Confidence 765433333
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=349.85 Aligned_cols=178 Identities=34% Similarity=0.670 Sum_probs=164.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999642 24699999999999999999999999999999999999999999999999988765 556788999
Q ss_pred EEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000777 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1288)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~i 543 (1288)
|++|++++|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEeEec
Q 000777 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 544 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 602 (1288)
|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887788999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=338.01 Aligned_cols=224 Identities=23% Similarity=0.451 Sum_probs=192.0
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH-Hhc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRK 460 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~ 460 (1288)
+.+..+|+.++|. .++|++|+||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++... -|.
T Consensus 3 ~~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 3578899999996 467999999999999999999999999999999999999999999999999999999765 467
Q ss_pred ceEEEcCCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000777 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 539 (1288)
.|||.||+|.+|.. ||+|||..-.+... .......+...+++.++.+ ++.......+..||||||+|+.|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 99999999999965 99999986544221 1122233333344555666 67777888999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchh-hhhcCEEEEEeCCEEeEecChhHHhcCC
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLST-VRNADMIAVIHRGKIVEKGTHSKLVEDP 611 (1288)
Q Consensus 540 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1288)
+|+.++||||+|++||.+...|++.++.++. +--|++.-|+..+ +.-|||.+++.+|++...|+++|+.+++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999999998864 5577777799875 5669999999999999999999999873
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=361.72 Aligned_cols=207 Identities=31% Similarity=0.545 Sum_probs=173.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999998765432 46899
Q ss_pred EEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 6999999875321 12222111 112334444 555556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999998753 6899999999999876 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=369.70 Aligned_cols=212 Identities=26% Similarity=0.497 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78999999996 346999999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEcCCCCCCch-hHHHHHhcCCCC-------CCH---HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKDD-------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 532 (1288)
|++|++.++.. |++||+.++... ... +++.++++.. |++......+..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHH
Confidence 99999988865 999999986321 011 1222333333 4444455667899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 533 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999999999999988754 6899999999999875 99999999999999999988764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=365.32 Aligned_cols=213 Identities=34% Similarity=0.534 Sum_probs=175.8
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH---HHHh
Q 000777 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIR 459 (1288)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r 459 (1288)
|+++||+++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996321 1269999999999999999999999999999999999999999999999999987663 5677
Q ss_pred cceEEEcCCCC--CC-chhHHHHHhcCCCCC---CHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000777 460 KKIGLVSQEPV--LF-TGSIKDNIAYGKDDA---TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 460 ~~i~~v~Q~~~--l~-~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 532 (1288)
++++|++|++. ++ ..|++||+.++.... ..++..+.. ..+.++.+ |+. ......+.+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 89999999993 44 579999998642111 111111100 12344444 553 4567778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 533 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998864 6899999999999875 9999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=367.70 Aligned_cols=217 Identities=27% Similarity=0.479 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999963 4699999999999999999999999999999999999999999999999999887777777899
Q ss_pred EEEcCCCCC-CchhHHHHHhcCCCCC--CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc-
Q 000777 463 GLVSQEPVL-FTGSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL- 538 (1288)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~- 538 (1288)
+|++|++.+ +..|++||+.++.... ..++... .+.+.++.+ |++........+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999987 5779999998763211 1111111 112233333 4544556667899999999999999999
Q ss_pred -----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 539 -----KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 539 -----~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999875 36899999999999875 99999999999999999988865
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=327.56 Aligned_cols=220 Identities=32% Similarity=0.551 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC----------
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~---------- 452 (1288)
.++++|++++|+ ...+|++|||+.++|+.+.|+|.|||||||+++||.=+..|+.|.|.++|..++-
T Consensus 6 ~l~v~dlHK~~G---~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcc---cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 589999999996 3569999999999999999999999999999999999999999999999988731
Q ss_pred CC---HHHHhcceEEEcCCCCCC-chhHHHHHhcCCC---CCCH-HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCC
Q 000777 453 FQ---LQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKD---DATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1288)
Q Consensus 453 ~~---~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~---~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 524 (1288)
.+ .+.+|.+.++|+|+..|+ ..||.||+.-+.- ..+. +.++. +..++.+. |+.......+..||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~------Ae~~L~kV--Gi~ek~~~YP~~LS 154 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIER------AEKYLAKV--GIAEKADAYPAHLS 154 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHH------HHHHHHHh--CchhhhhcCccccC
Confidence 12 345788999999999999 4699999874321 1122 22222 22344444 66666667778999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 525 gGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
|||+||+||||||..+|+++++|||||+|||+-.-++.+.++.+.+ +||.++|||.+.+.++ +.++++|.+|+|-|+|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 9999999999999999999999999999999999999999999875 7999999999999988 9999999999999999
Q ss_pred ChhHHhcCCCc
Q 000777 603 THSKLVEDPEG 613 (1288)
Q Consensus 603 ~~~~l~~~~~~ 613 (1288)
+|+++..+|..
T Consensus 235 ~P~qvf~nP~S 245 (256)
T COG4598 235 PPEQVFGNPQS 245 (256)
T ss_pred ChHHHhcCCCC
Confidence 99999988654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=365.12 Aligned_cols=216 Identities=29% Similarity=0.490 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC------CCHHH
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE------FQLQW 457 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~------~~~~~ 457 (1288)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 469999999999999999999999999999999999999999999999998731 23456
Q ss_pred HhcceEEEcCCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
++++|+|++|++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++..+.....+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 6789999999999886 499999975311 11122111 1233455555 66666777788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
|||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998764 6899999999999975 99999999999999999888754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=361.74 Aligned_cols=202 Identities=34% Similarity=0.527 Sum_probs=171.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccC--CCHHHHhcc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK--LQLKWLRQQ 1120 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~lR~~ 1120 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 369999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEccCCCCch-hhHHHHHhcCCC--CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1121 MGLVSQEPVLFN-DTIRANIAYGKG--GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1121 i~~V~Qd~~Lf~-gTIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
++|+||++.+|. .|++||+.++.. ...+.+ ++.++++..++ +..+.....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL-----------ADKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HhHhhhCccccCHHHHHHHHH
Confidence 999999999886 699999976421 122222 33444444444 333444557899999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~I 1258 (1288)
|||++++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999975 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=371.32 Aligned_cols=220 Identities=27% Similarity=0.490 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999642 24699999999999999999999999999999999999999999999999999888877888899
Q ss_pred EEEcCCCC--CCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
+|++|+|. ++..|+++|+.++... ...++..+. +.+.++.+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 4466899999886432 122221111 12223333 4444455667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEeEecChhHHhcC
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998753 6899999999999877999999999999999999998664
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=358.92 Aligned_cols=203 Identities=33% Similarity=0.504 Sum_probs=175.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
++++||+++|+. .++|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987644 4678899
Q ss_pred EEccCCCCch-hhHHHHHhcCCCC-----CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~~-----~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
||||+|.+|. .|++||+.++... ...++++.++++..++.+...+. ..+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL-----------PEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCC-----------cccCCHHHHHHHHHHHH
Confidence 9999999987 5999999753111 11344667777777776554433 34799999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt 1263 (1288)
++++|+++||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 7899999999999865 99999999999999885
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=371.38 Aligned_cols=223 Identities=26% Similarity=0.493 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCCC-HH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQ-LQ 456 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~-~~ 456 (1288)
.++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 589999999996 35699999999999999999999999999999999999986 6999999999987653 34
Q ss_pred HHhcceEEEcCCCCCCchhHHHHHhcCCCC---CCHHHHHHHHHHcCHHHHHHhC--CCCccccccCCCCCCChHHHHHH
Q 000777 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqri 531 (1288)
.++++++|++|++.+|+.|++||+.++... .+.++..... .+.++.+ +..+.+.+...+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 678899999999999999999999876321 2232222111 1222332 22223456677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 532 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988767899999999999876 999999999999999999999876
Q ss_pred CCc
Q 000777 611 PEG 613 (1288)
Q Consensus 611 ~~~ 613 (1288)
+..
T Consensus 253 ~~~ 255 (276)
T PRK14271 253 PKH 255 (276)
T ss_pred cCc
Confidence 433
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=369.62 Aligned_cols=223 Identities=22% Similarity=0.433 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH-hcc
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 461 (1288)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 489999999996 3569999999999999999999999999999999999999999999999999987775544 457
Q ss_pred eEEEcCCCCCCch-hHHHHHhcCCCCCCH----------HHH--HHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATT----------EEI--RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
++|++|++.+|.. |++||+.++...... ... ........+.+.++.+ |++......+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999875 999999975321000 000 0000111233455565 777777888899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChh
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1288)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999998754 6899999999999866 9999999999999999998
Q ss_pred HHhcC
Q 000777 606 KLVED 610 (1288)
Q Consensus 606 ~l~~~ 610 (1288)
++.+.
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 87653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=361.80 Aligned_cols=205 Identities=37% Similarity=0.654 Sum_probs=172.7
Q ss_pred EEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEE
Q 000777 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1288)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 464 (1288)
+++|++++|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999632 2569999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCCC--CCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 465 VSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 465 v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
++|++. ++..|++||+.++... ....+... .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999983 5678999999875321 12211111 122334444 555556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCE
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~ 597 (1288)
|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999998864 6899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=361.43 Aligned_cols=201 Identities=30% Similarity=0.498 Sum_probs=169.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH---HHhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 460 (1288)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 35699999999999999999999999999999999999999999999999999876543 4677
Q ss_pred ceEEEcCCCCCCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
.++|++|++.+|. .|++||+.++... ... +++.++++..+ +.........+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVG-----------LEHKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 8999999999885 6999999875211 111 22333333333 3333444557899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCE
Q 000777 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1288)
Q Consensus 534 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~ 597 (1288)
||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999998754 7899999999999986 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=367.27 Aligned_cols=220 Identities=30% Similarity=0.499 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCC-CCCHH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK-EFQLQ 456 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~ 456 (1288)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 488999999996 35699999999999999999999999999999999999986 5999999999985 34566
Q ss_pred HHhcceEEEcCCCCCCchhHHHHHhcCCCC--CC-HH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000777 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-TE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 529 (1288)
.+|+.++|++|++.+|..|++||+.++... .. .+ ++.++++..++.+ ++.+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHH
Confidence 778899999999999999999999876321 11 11 1222333333222 2234456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 9999999999999999998886
Q ss_pred cCCC
Q 000777 609 EDPE 612 (1288)
Q Consensus 609 ~~~~ 612 (1288)
..+.
T Consensus 233 ~~~~ 236 (249)
T PRK14253 233 SNPK 236 (249)
T ss_pred cCCC
Confidence 5433
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=372.00 Aligned_cols=217 Identities=28% Similarity=0.465 Sum_probs=180.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCC--CCCHHHHhcc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRKK 461 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 461 (1288)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999962 46999999999999999999999999999999999999999999999999985 3344567789
Q ss_pred eEEEcCCCC--CCchhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 462 IGLVSQEPV--LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 462 i~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
|+||+|++. ++..|+.+|+.++.. ....++..+. +.+.++.+ |++........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 567789999987421 1222221111 12233333 343334556789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999875 46899999999999865 999999999999999999988654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=369.03 Aligned_cols=221 Identities=32% Similarity=0.489 Sum_probs=185.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCC--CC
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 454 (1288)
+.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999962 4699999999999999999999999999999999999985 48999999999854 34
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCC---CCH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 527 (1288)
...++++|+|++|++.+|+.|++||+.++... ..+ +.+.++++..++.+++ ....+..+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 45678899999999999999999999875321 111 2233444444433222 223456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe-----CCEEeEe
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-----RGKIVEK 601 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~-----~G~i~~~ 601 (1288)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998777899999999999876 99999998 5999999
Q ss_pred cChhHHhcCCC
Q 000777 602 GTHSKLVEDPE 612 (1288)
Q Consensus 602 g~~~~l~~~~~ 612 (1288)
|+++++.+.+.
T Consensus 236 ~~~~~~~~~~~ 246 (259)
T PRK14260 236 GVTTQIFSNPL 246 (259)
T ss_pred CCHHHHhcCCC
Confidence 99999876543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=370.84 Aligned_cols=220 Identities=34% Similarity=0.530 Sum_probs=183.3
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCC--CC
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 454 (1288)
..|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45999999999963 469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCC--CC---HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 529 (1288)
...++++++|++|++.+|..|++||+.++... .. .+++.++++..++.. .+...++.++.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD-------EVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCc-------hhHHHHhCCcccCCHHHHH
Confidence 55678899999999999988999999875221 11 122333333332211 1122456778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEE-EEeCCEEeEecChhHH
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA-VIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~-~l~~G~i~~~g~~~~l 607 (1288)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5799999999999988
Q ss_pred hcCC
Q 000777 608 VEDP 611 (1288)
Q Consensus 608 ~~~~ 611 (1288)
..++
T Consensus 268 ~~~~ 271 (285)
T PRK14254 268 FENP 271 (285)
T ss_pred HhCc
Confidence 7653
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=378.65 Aligned_cols=201 Identities=24% Similarity=0.444 Sum_probs=173.5
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceEEEccCCCCchh-hHH
Q 000777 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIR 1136 (1288)
Q Consensus 1058 ~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd~~Lf~g-TIr 1136 (1288)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999976 345678999999999999875 999
Q ss_pred HHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeccCC
Q 000777 1137 ANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211 (1288)
Q Consensus 1137 eNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~p~ILlLDEaTS 1211 (1288)
||+.+... ...+ ++++.++++..++.+. ......+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99976311 1112 2345566666665433 233456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1212 ALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1212 aLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
+||+.+.+.+++.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 46899999999999975 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=366.58 Aligned_cols=226 Identities=28% Similarity=0.442 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC----CCceEEECCeeccCCCHHHH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP----DAGHITLDGVEIQKLQLKWL 1117 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p----~~G~I~idG~di~~i~~~~l 1117 (1288)
.|+++||+++| + +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 2599999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEccCCC-Cch--hhHHHHHhcC---CCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1118 RQQMGLVSQEPV-LFN--DTIRANIAYG---KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1118 R~~i~~V~Qd~~-Lf~--gTIreNl~~g---~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
++.++||||++. .|. .|+.+|+.+. ......+++++++++..++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 568999999985 343 5787776431 0112345677888887777542 1234566778999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhh
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1268 (1288)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 6899999999999865 9999999999999999999998
Q ss_pred cCCCc-HHHHHHHH
Q 000777 1269 NIPDG-FYASLIAL 1281 (1288)
Q Consensus 1269 ~~~~g-~y~~L~~~ 1281 (1288)
+.+.. .++.++..
T Consensus 230 ~~~~~~~~~~~~~~ 243 (254)
T PRK10418 230 NAPKHAVTRSLVSA 243 (254)
T ss_pred hCCCCHHHHHHHHh
Confidence 76544 34445543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=408.51 Aligned_cols=110 Identities=33% Similarity=0.533 Sum_probs=97.9
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHHcCCC---CEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh
Q 000777 1171 GYDT-MVGERGLQLSGGQKQRVAIARAIVKDP---KILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIK 1245 (1288)
Q Consensus 1171 Gldt-~vge~G~~LSgGQrQrlaiARALlr~p---~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~ 1245 (1288)
|++. .++.....||||||||++|||+|+++| +++||||||++||+++...+.+.|+++. ++.|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5543 367788899999999999999999999 9999999999999999999999999875 5789999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhhhhcCCCcHHHHHHH
Q 000777 1246 NADMIAVV------KNGVIVEKGKHENLINIPDGFYASLIA 1280 (1288)
Q Consensus 1246 ~~DrI~vl------~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1280 (1288)
.||+|++| ++|+|++.|+++++.+++.+.-.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~ 938 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLK 938 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHH
Confidence 99999999 699999999999999876665555544
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=367.33 Aligned_cols=225 Identities=30% Similarity=0.485 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~~ 455 (1288)
-++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 378999999996 346999999999999999999999999999999999999874 8999999999864 334
Q ss_pred HHHhcceEEEcCCCCCCc-hhHHHHHhcCCCC--C-CHHHHHHHHHHcCHHHHHHhC--CCCccccccCCCCCCChHHHH
Q 000777 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--A-TTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkq 529 (1288)
..+++.++|++|++.+|. .|++||+.++... . ..++..+.+. +.+..+ ..++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 567788999999999887 5999999865321 1 2222222111 111111 111222334567899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999986 9999999999999999999998
Q ss_pred cCCCchH
Q 000777 609 EDPEGAY 615 (1288)
Q Consensus 609 ~~~~~~~ 615 (1288)
..+...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14272 236 TNPRDER 242 (252)
T ss_pred hCcCcHH
Confidence 7654444
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=371.44 Aligned_cols=218 Identities=33% Similarity=0.558 Sum_probs=182.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC--CCHHHHhcc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 461 (1288)
++++|++++|+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999962 3469999999999999999999999999999999999999999999999999852 234457789
Q ss_pred eEEEcCCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 462 IGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
|+|++|+| .+|..|++||+.++... .+.++..+ .+.+.++.+ |+.......+.+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 57888999999875321 22222111 112333443 444445566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+.+|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998864 6899999999999875 999999999999999999998764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=367.87 Aligned_cols=223 Identities=30% Similarity=0.443 Sum_probs=186.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC---CceEEECCeeccCC-----C
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEIQKL-----Q 1113 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i-----~ 1113 (1288)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3899999999963 46999999999999999999999999999999999999986 49999999998653 3
Q ss_pred HHHHhcceEEEccCCCCch-hhHHHHHhcCCCC-------------CCCHHHHHHHHHHhchhHHHHhhhccccccccCC
Q 000777 1114 LKWLRQQMGLVSQEPVLFN-DTIRANIAYGKGG-------------DATEAEIQAASEMANAHKFICSLQQGYDTMVGER 1179 (1288)
Q Consensus 1114 ~~~lR~~i~~V~Qd~~Lf~-gTIreNl~~g~~~-------------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~ 1179 (1288)
...+|++++|+||++.+|. .|++||+.++... ...++++.++++..++.++ ....
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCC
Confidence 4567889999999999887 5999999865210 0112345556666655443 2344
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCC
Q 000777 1180 GLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNG 1256 (1288)
Q Consensus 1180 G~~LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G 1256 (1288)
...||||||||++||||++.+|++|||||||++||+++...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999998753 789999999999875 59999999999
Q ss_pred EEEEecChhhhhcCCCcHHHHHHHH
Q 000777 1257 VIVEKGKHENLINIPDGFYASLIAL 1281 (1288)
Q Consensus 1257 ~Ive~Gt~~eLl~~~~g~y~~L~~~ 1281 (1288)
++++.|+++++ . .....+++..
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~~ 251 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYRS 251 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHhh
Confidence 99999999997 2 3355665543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=345.74 Aligned_cols=221 Identities=28% Similarity=0.502 Sum_probs=192.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHH-hcce
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 462 (1288)
++++|++++|+ +-.+++|+||++++||+++|+|||||||||++++|.|+|+|++|+|.++|+||..++++.+ |..|
T Consensus 5 L~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 67899999996 4569999999999999999999999999999999999999999999999999999998764 5789
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCCC-----------CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
+--||.+.+|+ .||.||+..+.... ...+..++. ..+.+.++.+ |++...++...+||+|||+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~--e~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR--ERARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHH--HHHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 99999999995 59999999863211 001112222 2233455655 88888889999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
+.|||||+.+|++|+||||.++|.+.....+.+.|+++.+ +.|+++|.||++.+.. ||||+||+.|+++.+|+|+|.
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999985 3899999999999987 999999999999999999999
Q ss_pred hcCC
Q 000777 608 VEDP 611 (1288)
Q Consensus 608 ~~~~ 611 (1288)
.++|
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 8874
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=361.21 Aligned_cols=202 Identities=30% Similarity=0.519 Sum_probs=166.0
Q ss_pred EEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEE
Q 000777 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1288)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 464 (1288)
+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 46999999999999999999999999999999999999999999999998764 45778999
Q ss_pred EcCCCCC---CchhHHHHHhcCCCCC------CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 465 VSQEPVL---FTGSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 465 v~Q~~~l---~~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
++|++.+ ++.|++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-----AKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHH-----HHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999976 5689999998764311 001110 0122233333 4444445566799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999876 56899999999999876 9999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=357.57 Aligned_cols=210 Identities=31% Similarity=0.483 Sum_probs=184.5
Q ss_pred EEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH----HHHhc
Q 000777 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRK 460 (1288)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~ 460 (1288)
.+.|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 57899999973 3579999999999999999999999999999999999999999999999998876542 23567
Q ss_pred ceEEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
.++|++|+|.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998653 334555677777788888888999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHhcC-CceEEEEecCchhhhhcCEEEEEeCCE
Q 000777 541 PRILLLDEATSALDAESEKVVQE--ALDRIMV-NRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~--~l~~~~~-~~t~i~itH~l~~~~~~d~i~~l~~G~ 597 (1288)
|++|||||||++||+.+...+.+ .++.+.+ ++|+|++||+++.+..||++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 4555543 589999999999987899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=364.86 Aligned_cols=223 Identities=30% Similarity=0.510 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCCC--CH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--QL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 455 (1288)
.++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 378999999996 2469999999999999999999999999999999999864 4899999999998653 45
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
..++++++|+||++.+|..|++||+.++... . +. +++.++++.+++.+++. ..++..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 5678899999999999999999999875321 1 11 22334445544433332 224567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999876 999999999999999999999
Q ss_pred hcCCCchH
Q 000777 608 VEDPEGAY 615 (1288)
Q Consensus 608 ~~~~~~~~ 615 (1288)
...+...+
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14266 233 FINPKDKR 240 (250)
T ss_pred HhCCCChH
Confidence 76654443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=361.44 Aligned_cols=213 Identities=25% Similarity=0.451 Sum_probs=180.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 589999999996 34699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
+|++|++.+|+.|++||+.++.......... ..+.+.++.+ |+. +.....+.+||||||||++|||||+++|
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999899999998642100000000 1122445555 553 4567788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEe-CCEEeEecChh
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIH-RGKIVEKGTHS 605 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~-~G~i~~~g~~~ 605 (1288)
+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999998753 689999999999998899999995 66677788875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=357.16 Aligned_cols=230 Identities=28% Similarity=0.482 Sum_probs=189.7
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-C----CCceEEECCeeccCCCHHH
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-P----DAGHITLDGVEIQKLQLKW 1116 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p----~~G~I~idG~di~~i~~~~ 1116 (1288)
++++|++..|+... ...+++||||+|++||++||||.|||||||+.++++|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2469999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----cceEEEccCCC-Cch--hhHHHH----HhcCCCC---CCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCC
Q 000777 1117 LR----QQMGLVSQEPV-LFN--DTIRAN----IAYGKGG---DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQ 1182 (1288)
Q Consensus 1117 lR----~~i~~V~Qd~~-Lf~--gTIreN----l~~g~~~---~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~ 1182 (1288)
+| +.|++|||||. =|+ -||.+- +...... ....++..+.++.+++.+- +..+..-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 43 37999999984 122 234333 3321110 0113467777888887643 2234456788
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 000777 1183 LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIV 1259 (1288)
Q Consensus 1183 LSgGQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv 1259 (1288)
||||||||+.||-||+.+|++||.||||+|||..++++|.+.|+++.+ +.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998874 7899999999999866 9999999999999
Q ss_pred EecChhhhhcCCCcHHHHHHH
Q 000777 1260 EKGKHENLINIPDGFYASLIA 1280 (1288)
Q Consensus 1260 e~Gt~~eLl~~~~g~y~~L~~ 1280 (1288)
|.|+.+++++++...|.+.+-
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999999888877553
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=357.90 Aligned_cols=208 Identities=27% Similarity=0.478 Sum_probs=173.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH---HHhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 460 (1288)
|+++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 35699999999999999999999999999999999999999999999999999876543 3678
Q ss_pred ceEEEcCCCCCC-chhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 461 KIGLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
.++|++|+|.++ ..|++||+.++.. ..+.++..+. +.+.++.+ |+.........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 999999999874 6799999987531 1222222111 11233333 444445566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeE
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~ 600 (1288)
+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999998754 6899999999999976 99999999999863
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=367.63 Aligned_cols=214 Identities=27% Similarity=0.439 Sum_probs=184.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 461 (1288)
..|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999963 469999999999999999999999999999999999999999999999999988877777889
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCC-CC------CCH---HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGK-DD------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~-~~------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
++|+||++.+|. .|++||+.++. +. ... +++.++++ .+ |++......+.+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ---------AT--GITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHH---------Hc--CCHHHhcCCcccCChHHHHH
Confidence 999999998874 69999998752 11 011 12233333 33 44444556778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998854 6799999999998866 999999999999999999887
Q ss_pred hc
Q 000777 608 VE 609 (1288)
Q Consensus 608 ~~ 609 (1288)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=368.34 Aligned_cols=221 Identities=25% Similarity=0.442 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998888777788899
Q ss_pred EEcCCCCC-CchhHHHHHhcCCCCCCHH-HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000777 464 LVSQEPVL-FTGSIKDNIAYGKDDATTE-EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 541 (1288)
|++|++.+ +..|++||+.++....... ..........+.+.++.+ |+.......+.+||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999864 5679999998763211000 000000011223344444 4544556677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhc
Q 000777 542 RILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 542 ~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
+++||||||++||+.+...+.+.|+++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999998864 6899999999999965 99999999999999999888754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=366.43 Aligned_cols=225 Identities=29% Similarity=0.473 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee-----CCCCCHHH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 457 (1288)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 469999999999999999999999999999999999999999999999998 77666543
Q ss_pred ----HhcceEEEcCCCC--CC-chhHHHHHhcCC---CCCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChH
Q 000777 458 ----IRKKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1288)
Q Consensus 458 ----~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 526 (1288)
.++.++|++|++. ++ ..|+.+|+.+.. ......+... .+.++++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 358888886421 1111111111 234566666 454 4677888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecC
Q 000777 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 527 qkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 603 (1288)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988754 6899999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHHH
Q 000777 604 HSKLVEDPEGAYSQ 617 (1288)
Q Consensus 604 ~~~l~~~~~~~~~~ 617 (1288)
++++..++...|.+
T Consensus 236 ~~~~~~~~~~~~~~ 249 (258)
T PRK11701 236 TDQVLDDPQHPYTQ 249 (258)
T ss_pred HHHHhcCCCCHHHH
Confidence 99997664444443
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=338.10 Aligned_cols=220 Identities=29% Similarity=0.431 Sum_probs=186.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHH-Hhcce
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW-LRQQM 1121 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1121 (1288)
++++||+..|.. .++|+||||++++||+|+++||||+|||||+++|+|+.+|.+|+|.++|.||+..+++. .|..|
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 789999999963 47999999999999999999999999999999999999999999999999999998766 57889
Q ss_pred EEEccCCCCch-hhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHHcCC
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD 1200 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARALlr~ 1200 (1288)
+||||...+|. -||.|||.+|... ..+++-++ ..+++.-+-+| -+.......+.+|||||+|.+||||||+.+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~-~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYA-RRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhc-cccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999999995 6999999876321 11111110 00111112233 344556677889999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhcCC
Q 000777 1201 PKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1201 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~~~ 1271 (1288)
|++|+|||||.+|-|.--+.|.++|+++.+ +.||+.|-++..... -+||.+||++|+|+.+|+.+||.+++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999874 459999999999875 49999999999999999999999863
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=359.18 Aligned_cols=206 Identities=33% Similarity=0.536 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCH---HHHhc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 460 (1288)
++++|++++|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 469999999999999999999999999999999999999999999999999987654 24677
Q ss_pred ceEEEcCCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
.++|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 8999999999887 5999999875321 12211111 112233333 444445556679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 598 (1288)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 46899999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=377.94 Aligned_cols=230 Identities=23% Similarity=0.373 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCC-CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC----CCCcEEEECCeeCCCCCHHH
Q 000777 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQW 457 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 457 (1288)
-|+++|++++|+.+ ....+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 22469999999999999999999999999999999999986 58999999999998877654
Q ss_pred H----hcceEEEcCCCCC--C-chhHHHHHhcCCC---CC-----CHHHHHHHHHHcCHHHHHHhCCCCcc---ccccCC
Q 000777 458 I----RKKIGLVSQEPVL--F-TGSIKDNIAYGKD---DA-----TTEEIRVATELANAAKFIDKLPQGID---TLVGEH 519 (1288)
Q Consensus 458 ~----r~~i~~v~Q~~~l--~-~~ti~~ni~~~~~---~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~~ 519 (1288)
+ ++.|+||||+|.. + ..||.+|+..... .. ...+.. ..+.+.++.+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK-----RRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH-----HHHHHHHHHC--CCCChHHHHhCC
Confidence 4 3479999999963 3 3589999864211 00 001110 1122344444 443 234567
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCC
Q 000777 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1288)
Q Consensus 520 g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G 596 (1288)
+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999998864 6899999999999976 9999999999
Q ss_pred EEeEecChhHHhcCCCchHHHHH
Q 000777 597 KIVEKGTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~~ 619 (1288)
+|++.|+.+++.+++...|.+.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999887777776643
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=367.33 Aligned_cols=225 Identities=31% Similarity=0.470 Sum_probs=187.6
Q ss_pred cccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCC----
Q 000777 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK---- 451 (1288)
Q Consensus 381 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~---- 451 (1288)
.+.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 357999999999963 4699999999999999999999999999999999999875 7999999998874
Q ss_pred CCCHHHHhcceEEEcCCCCCCchhHHHHHhcCCC--CCC-----HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCC
Q 000777 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1288)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 524 (1288)
..+...+++.|+|++|++.+|.+|++||+.++.. ... ++++..+++.+++.+ ++.+..+..+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 2344567889999999999998999999987531 111 122333333333221 33345667788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecC
Q 000777 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 525 gGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 603 (1288)
||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998777899999999999975 99999999999999999
Q ss_pred hhHHhcCCCchH
Q 000777 604 HSKLVEDPEGAY 615 (1288)
Q Consensus 604 ~~~l~~~~~~~~ 615 (1288)
++++..++...|
T Consensus 244 ~~~~~~~~~~~~ 255 (265)
T PRK14252 244 TDTIFIKPKNKQ 255 (265)
T ss_pred HHHHHhCCCCHH
Confidence 999876533333
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=365.60 Aligned_cols=214 Identities=21% Similarity=0.363 Sum_probs=176.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--CCCCCceEEECCeeccCCCHHHH-hc
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-RQ 1119 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~~~~l-R~ 1119 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 3699999999999999999999999999999999999 47999999999999988876654 45
Q ss_pred ceEEEccCCCCchh-hHHHHHhcCCC--CC------CC----HHHHHHHHHHhchhHHHHhhhccccccccCCCC-CCCh
Q 000777 1120 QMGLVSQEPVLFND-TIRANIAYGKG--GD------AT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGL-QLSG 1185 (1288)
Q Consensus 1120 ~i~~V~Qd~~Lf~g-TIreNl~~g~~--~~------~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~-~LSg 1185 (1288)
.++|+||+|.+|.+ |++||+.+... .. .+ ++++.++++..++.+. ....... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hcccccccCcCH
Confidence 69999999998875 89999865311 00 11 1234445554444311 1122233 5999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhh--cCEEEEEeCCEEEEec
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN--ADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1186 GQrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~Ive~G 1262 (1288)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 46899999999999976 7999999999999999
Q ss_pred Chhhhhc
Q 000777 1263 KHENLIN 1269 (1288)
Q Consensus 1263 t~~eLl~ 1269 (1288)
+++++..
T Consensus 228 ~~~~~~~ 234 (243)
T TIGR01978 228 DVELAKE 234 (243)
T ss_pred CHHHhcc
Confidence 9986543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=370.92 Aligned_cols=224 Identities=30% Similarity=0.455 Sum_probs=184.7
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCCC--C
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 454 (1288)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 469999999999999999999999999999999999864 4999999999998643 3
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 527 (1288)
...+|++++||+|++.+|..|++||+.++... . .. +++.++++..++.+ ++.......+.+|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHH
Confidence 34567899999999999988999999975321 1 11 12222333222211 12233456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhH
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1288)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999876 99999999999999999999
Q ss_pred HhcCCCchH
Q 000777 607 LVEDPEGAY 615 (1288)
Q Consensus 607 l~~~~~~~~ 615 (1288)
+.+++...+
T Consensus 268 ~~~~~~~~~ 276 (286)
T PRK14275 268 LFTNPKDRM 276 (286)
T ss_pred HHhCCCcHH
Confidence 877644433
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=368.68 Aligned_cols=227 Identities=30% Similarity=0.468 Sum_probs=185.2
Q ss_pred EEEEEEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCH--
Q 000777 1043 IELHHVSFKYPSR------PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-- 1114 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-- 1114 (1288)
|+++||+++|+.. .++++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999731 03479999999999999999999999999999999999999999999999999987765
Q ss_pred -HHHhcceEEEccCCC--Cc-hhhHHHHHhcCCC--CCCCHHHHHHHHHHhchhHHHHhhhccccc-cccCCCCCCChhH
Q 000777 1115 -KWLRQQMGLVSQEPV--LF-NDTIRANIAYGKG--GDATEAEIQAASEMANAHKFICSLQQGYDT-MVGERGLQLSGGQ 1187 (1288)
Q Consensus 1115 -~~lR~~i~~V~Qd~~--Lf-~gTIreNl~~g~~--~~~sd~ei~~al~~a~l~~~i~~lp~Gldt-~vge~G~~LSgGQ 1187 (1288)
..+|+.++|+||++. ++ ..|+++|+.+... ...+.++ ....+.+.+..+ |+++ ..+..+..|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 357889999999983 43 4799999864210 0111111 111223333332 4542 3456678999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1188 rQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~ 1264 (1288)
|||++|||||+.+|+||||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 7899999999999975 999999999999999999
Q ss_pred hhhhcCCCcHHHH
Q 000777 1265 ENLINIPDGFYAS 1277 (1288)
Q Consensus 1265 ~eLl~~~~g~y~~ 1277 (1288)
+++... ++.|..
T Consensus 237 ~~~~~~-~~~~~~ 248 (268)
T PRK10419 237 GDKLTF-SSPAGR 248 (268)
T ss_pred hhccCC-CCHHHH
Confidence 999875 555543
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=359.35 Aligned_cols=205 Identities=26% Similarity=0.500 Sum_probs=173.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 47899999996 3469999999999999999999999999999999999999999999999988753 4567899
Q ss_pred EEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|++|++.++. .|++||+.++.. .....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 499999987421 11111111 1233455555 666666777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998875 46899999999999866 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=367.31 Aligned_cols=221 Identities=25% Similarity=0.382 Sum_probs=185.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC--------CcEEEECCeeCCCCCH
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--------AGEVLIDGINLKEFQL 455 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~--------~G~i~~~g~~~~~~~~ 455 (1288)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78999999995 346999999999999999999999999999999999999998 9999999999988777
Q ss_pred HHHhcceEEEcCCCC-CCchhHHHHHhcCCCCC-CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000777 456 QWIRKKIGLVSQEPV-LFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~-l~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 533 (1288)
..+++.++|++|++. +|..|++||+.++.... .............+.+.++.+ |+++..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 777888999999986 56789999998763211 000000000001123344555 67777788889999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEe
Q 000777 534 ARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1288)
Q Consensus 534 ARal~---------~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 601 (1288)
||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999998764 6899999999999865 999999999999999
Q ss_pred cChhHHhc
Q 000777 602 GTHSKLVE 609 (1288)
Q Consensus 602 g~~~~l~~ 609 (1288)
|+++++..
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=380.46 Aligned_cols=212 Identities=28% Similarity=0.480 Sum_probs=180.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCC----CHHHHh
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIR 459 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~r 459 (1288)
|++ |++++|+. . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 23 89999999999999999999999999999999999999999999998653 234457
Q ss_pred cceEEEcCCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000777 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 538 (1288)
++++||+|++.+|. .|++||+.++......+++.+.++ .+ |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~---------~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVA---------LL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHH---------Hc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 79999999999985 699999998754322333333333 33 4555556667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1288)
Q Consensus 539 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1288)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999998764 6899999999998876 99999999999999999999988754
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=382.40 Aligned_cols=234 Identities=32% Similarity=0.506 Sum_probs=189.5
Q ss_pred ccEEEEeEEEECCCC--------CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeC--C
Q 000777 382 GDIELRDVYFSYPAR--------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL--K 451 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~--~ 451 (1288)
.-++++|++++|..+ ....+++||||++.+||++||||+||||||||.++|+|+.+|++|+|.++|.|+ +
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 458899999999742 124689999999999999999999999999999999999999999999999882 2
Q ss_pred CCCHHHHhcceEEEcCCCCC--C-chhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-cccCCCCCCChHH
Q 000777 452 EFQLQWIRKKIGLVSQEPVL--F-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQ 527 (1288)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l--~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGq 527 (1288)
.-+....|+++-+|+|||+- - ..||+++|.-......... .+.+.+.+.+.++.. |+.. .....+.+|||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~V--gL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELV--GLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHc--CCCHHHHhcCchhcCcch
Confidence 22344577899999999963 3 4699999975422111000 011111122222222 3333 4667788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecCh
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1288)
||||||||||..+|+++|+|||||+||+-+...+.+.|+++.+ +.|.|+||||++.++. ||||+||++|+|+|.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999998865 5799999999999988 999999999999999999
Q ss_pred hHHhcCCCchHHHHH
Q 000777 605 SKLVEDPEGAYSQLI 619 (1288)
Q Consensus 605 ~~l~~~~~~~~~~~~ 619 (1288)
+++.+++...|.+..
T Consensus 515 ~~v~~~p~h~Ytr~L 529 (539)
T COG1123 515 EKVFENPQHPYTRKL 529 (539)
T ss_pred HHHhcCCCChHHHHH
Confidence 999999888888754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=369.15 Aligned_cols=215 Identities=30% Similarity=0.520 Sum_probs=188.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcce
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1121 (1288)
.++++||+.+|.. +..+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 3788999999962 24699999999999999999999999999999999999999999999999998665 77899999
Q ss_pred EEEccCCCCch-hhHHHHHhcCC-----CCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHH
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195 (1288)
Q Consensus 1122 ~~V~Qd~~Lf~-gTIreNl~~g~-----~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1195 (1288)
|||||+|.++. -|++|||.|.. .....++++.+.++..++.+.- ......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 99999999775 69999998531 1112356788888888876521 2334579999999999999
Q ss_pred HHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcC
Q 000777 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMK-N-RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1196 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~-~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
||+.+|++|||||||++||+.+...+++.|+++.+ + +||++.||.++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 699999999999987 999999999999999999998754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=365.16 Aligned_cols=221 Identities=31% Similarity=0.448 Sum_probs=185.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCC--CC
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 454 (1288)
..|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 4699999999999999999999999999999999999863 69999999999864 33
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCCC-----CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 529 (1288)
...++++|+|++|++.+|+.|++||+.++.... .++.+.++++.+++.+.+ .......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHH
Confidence 446778999999999999889999998753211 112233344444432222 22345677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe---------CCEEe
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH---------RGKIV 599 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~---------~G~i~ 599 (1288)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998777899999999999976 99999997 89999
Q ss_pred EecChhHHhcCCC
Q 000777 600 EKGTHSKLVEDPE 612 (1288)
Q Consensus 600 ~~g~~~~l~~~~~ 612 (1288)
+.|+++++...+.
T Consensus 249 ~~g~~~~~~~~~~ 261 (274)
T PRK14265 249 EFSPTEQMFGSPQ 261 (274)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999876544
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=366.22 Aligned_cols=218 Identities=32% Similarity=0.496 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 455 (1288)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999974 79999999999853 345
Q ss_pred HHHhcceEEEcCCCCCCc-hhHHHHHhcCCCC---CCHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHH
Q 000777 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 527 (1288)
..+++.++|++|++.+|. .|++||+.++... ...+ .+.++++..++.+ +........+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 567889999999999886 5999999875321 1111 1222233332211 11234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe------CCEEeE
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH------RGKIVE 600 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~------~G~i~~ 600 (1288)
|||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999998767899999999999865 99999997 899999
Q ss_pred ecChhHHhcC
Q 000777 601 KGTHSKLVED 610 (1288)
Q Consensus 601 ~g~~~~l~~~ 610 (1288)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998765
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=371.40 Aligned_cols=214 Identities=31% Similarity=0.541 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcce
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 462 (1288)
.++++|++++|+. ++.+|+||||+|++|+++|++||||||||||+++|+|+..|++|+|.++|.+...- ....+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999962 35799999999999999999999999999999999999999999999999998765 66778899
Q ss_pred EEEcCCCCCCc-hhHHHHHhcCCCC------CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 535 (1288)
||+||+|.++. .|++||+.|...- ...+++.+.++..++ +........+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGL-----------EDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCC-----------chhhCcchhhcCHHHHHHHHHHH
Confidence 99999999874 5999999974211 112344555554443 32224556789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-ceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 536 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
||+.+|++|||||||++|||.++..+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999876 4 699999999999987 999999999999999999887653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=359.67 Aligned_cols=212 Identities=27% Similarity=0.428 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHH---H
Q 000777 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 458 (1288)
.|+++|++++|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 35999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcceEEEcCCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000777 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1288)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 534 (1288)
++.++|++|++.++. .|++||+.++.. .....+.. ..+.+.++.+ |++........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-----NGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 368999999999886 499999986421 11111111 1122333444 444444556679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEeEe
Q 000777 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1288)
Q Consensus 535 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 601 (1288)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999998753 6899999999998877999999999999764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=343.83 Aligned_cols=172 Identities=39% Similarity=0.705 Sum_probs=161.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|+.. ..++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999632 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000777 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1288)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~i 543 (1288)
|++|++.+|+.|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhhcCEEEEEeCCEE
Q 000777 544 LLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1288)
Q Consensus 544 lllDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~~d~i~~l~~G~i 598 (1288)
|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999988754 6899999999999877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=356.59 Aligned_cols=205 Identities=32% Similarity=0.566 Sum_probs=173.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCC--CCHHHHhcc
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 461 (1288)
++++|++++|+. +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999963 469999999999999999999999999999999999999999999999999853 344567789
Q ss_pred eEEEcCCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 537 (1288)
++|++|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999886 699999987532 122221111 123345555 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEE
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1288)
Q Consensus 538 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i 598 (1288)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998864 6899999999999976 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=361.04 Aligned_cols=215 Identities=36% Similarity=0.557 Sum_probs=180.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 468999999963 4699999999999999999999999999999999999999999999999999765542 57899
Q ss_pred EEcCCCCCCch-hHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|++|++.+|.+ |++||+.++... .+...... .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-----RVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999864 999999865321 11111111 112233333 455555566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999998864 7899999999999876 999999999999999999888764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=363.43 Aligned_cols=220 Identities=30% Similarity=0.422 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeeCCCC--CH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 455 (1288)
.+.+++++++|+ +.++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 588999999995 34699999999999999999999999999999999999986 799999999998643 33
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCCCC-----CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 530 (1288)
..+++.++|++|++.+|..|++||+.++.... ..+++.++++..++.+.+ ....++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence 45678899999999999999999999763211 112344445444443222 223456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe--------CCEEeEe
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH--------RGKIVEK 601 (1288)
Q Consensus 531 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~--------~G~i~~~ 601 (1288)
++|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998777899999999999876 99999996 8999999
Q ss_pred cChhHHhcCCC
Q 000777 602 GTHSKLVEDPE 612 (1288)
Q Consensus 602 g~~~~l~~~~~ 612 (1288)
|+++++.+++.
T Consensus 238 g~~~~~~~~~~ 248 (261)
T PRK14263 238 GPTAQIFQNPR 248 (261)
T ss_pred CCHHHHHhCCC
Confidence 99999986543
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=365.35 Aligned_cols=222 Identities=31% Similarity=0.499 Sum_probs=185.0
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCeeCCC--CC
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQ 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~ 454 (1288)
+.|+++|++++|+. +.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 36999999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHH
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 527 (1288)
...+++.++|++|++.+|..|++||+.++... . +. +++.++++..++.++ ++...+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHH
Confidence 45678899999999999999999999865211 1 11 122333333333222 2234567778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC-----CEEe
Q 000777 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR-----GKIV 599 (1288)
Q Consensus 528 kqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~-----G~i~ 599 (1288)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999864 37899999999999876 999999999 9999
Q ss_pred EecChhHHhcCCCc
Q 000777 600 EKGTHSKLVEDPEG 613 (1288)
Q Consensus 600 ~~g~~~~l~~~~~~ 613 (1288)
+.|+++++.+.+..
T Consensus 236 ~~~~~~~~~~~~~~ 249 (261)
T PRK14258 236 EFGLTKKIFNSPHD 249 (261)
T ss_pred EeCCHHHHHhCCCC
Confidence 99999999776443
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.51 Aligned_cols=203 Identities=28% Similarity=0.440 Sum_probs=172.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 3699999999999999999999999999999999999999999999999998642 34689
Q ss_pred EEccCCCCch-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
|+||++.+|. .|++||+.++.. .... ++++.++++..++.+. ......+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHH
Confidence 9999999886 699999976421 0112 2345555665555433 334457899999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhh-cCEEEEEe--CCEEEEecCh
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVK--NGVIVEKGKH 1264 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~Ive~Gt~ 1264 (1288)
|+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999874 37899999999999865 99999998 5999998764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=359.91 Aligned_cols=215 Identities=33% Similarity=0.542 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++|++++|+. +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEcCCCCCCch-hHHHHHhcCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1288)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 540 (1288)
|+||+|.+|.+ |++||+.++... .+..... ..+.+.++.+ |+.........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999965 999999876431 1111111 1223445555 444445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 541 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
|+++||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999998764 6899999999999866 999999999999999999998764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=354.00 Aligned_cols=201 Identities=30% Similarity=0.532 Sum_probs=169.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 478999999963 22 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEcCCCCCCch-hHHHHHhcCCC-CC-----CHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKD-DA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
|++|++.+|.. |++||+.++.. .. .++++.++++..++ +........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGL-----------AGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCC-----------HHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999865 99999987642 11 12233444444444 333444556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEec
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
++.+|++|||||||++||++++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 6899999999999976 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=360.18 Aligned_cols=211 Identities=26% Similarity=0.446 Sum_probs=170.7
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCceEEECCeeccCCCHHHHh
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD---PDAGHITLDGVEIQKLQLKWLR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR 1118 (1288)
+.|+||+|+|++.. .+++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999998532 2579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEccCCCCchh-hHHHHHhcCCC---CCCCHHHHHHHHHHhchhH-HHHhhhccccccccCCCCCCChhHHHHHHH
Q 000777 1119 QQMGLVSQEPVLFND-TIRANIAYGKG---GDATEAEIQAASEMANAHK-FICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~g-TIreNl~~g~~---~~~sd~ei~~al~~a~l~~-~i~~lp~Gldt~vge~G~~LSgGQrQrlai 1193 (1288)
++++|+||++.+|.+ |++||+.++.. .....++.. .....+ .+..+ +++.........||||||||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----KKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHH----HHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 999999999999987 99999986411 011111111 001111 11111 23333345567899999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCc-hhh-hhcCEEEEEeCCEEEEec
Q 000777 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRL-STI-KNADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1194 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl-~ti-~~~DrI~vl~~G~Ive~G 1262 (1288)
||||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||++ ..+ ..||+|++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999875 468999999998 455 559999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=363.81 Aligned_cols=221 Identities=29% Similarity=0.462 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC--C---CCcEEEECCeeCCC--CCH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 455 (1288)
.|+++||+++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999975 5 59999999999864 334
Q ss_pred HHHhcceEEEcCCCCCCchhHHHHHhcCCC--CC-CHH----HHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
..+++.++|++|++.+|..|+++|+.++.. .. ..+ ++.++++..++. .++.......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 456789999999999998999999987521 11 111 122222222221 1223345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999875 999999999999999999998
Q ss_pred hcCCCc
Q 000777 608 VEDPEG 613 (1288)
Q Consensus 608 ~~~~~~ 613 (1288)
..++..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14255 235 FLNPKE 240 (252)
T ss_pred hcCCCC
Confidence 776443
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=357.30 Aligned_cols=209 Identities=29% Similarity=0.502 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceE
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 463 (1288)
++++||+++|+. . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999962 2 2399999999999999999999999999999999999999999999998765442 46899
Q ss_pred EEcCCCCCCch-hHHHHHhcCCC-CC--C---HHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKD-DA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~-~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 536 (1288)
|++|++.+|.. |++||+.++.. .. . ++++.++++..+ ++..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG-----------IEDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcC-----------cHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999998875 99999987531 11 1 123344444444 4444455556999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 537 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 6899999999999876 999999999999999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=364.53 Aligned_cols=222 Identities=24% Similarity=0.445 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCC------CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHH
Q 000777 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 456 (1288)
.|+++||+++|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEcCCCC--CCc-hhHHHHHhcCCC---CCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccccCCCCCCChHHHH
Q 000777 457 WIRKKIGLVSQEPV--LFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQ 529 (1288)
Q Consensus 457 ~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkq 529 (1288)
..++.++|++|++. ++. .|+.+|+.++.. .....+..+ .+.+.++.+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 66678999999985 443 489999875321 111111111 112233333 332 2234455789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhH
Q 000777 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1288)
Q Consensus 530 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1288)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999998853 6899999999999986 99999999999999999999
Q ss_pred HhcCC
Q 000777 607 LVEDP 611 (1288)
Q Consensus 607 l~~~~ 611 (1288)
+...+
T Consensus 237 ~~~~~ 241 (267)
T PRK15112 237 VLASP 241 (267)
T ss_pred HhcCC
Confidence 98764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=379.66 Aligned_cols=213 Identities=30% Similarity=0.479 Sum_probs=180.5
Q ss_pred EEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCC----HHHHhcceE
Q 000777 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWLRQQMG 1122 (1288)
Q Consensus 1047 nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~lR~~i~ 1122 (1288)
||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 23 4 999999999999999999999999999999999999999999999986532 345788999
Q ss_pred EEccCCCCch-hhHHHHHhcCCCCCCC----HHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHH
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKGGDAT----EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197 (1288)
Q Consensus 1123 ~V~Qd~~Lf~-gTIreNl~~g~~~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARAL 1197 (1288)
||||++.+|. .|++||+.++.. ... ++++.++++..++.+ ........||||||||++|||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGH-----------LLGRLPGRLSGGEKQRVAIGRAL 146 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999997 499999987632 111 223555555555543 34455678999999999999999
Q ss_pred cCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhhhhcCCCcH
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGF 1274 (1288)
Q Consensus 1198 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~ 1274 (1288)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 226 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLP 226 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcc
Confidence 999999999999999999999999999998754 6899999999999865 9999999999999999999999876544
Q ss_pred HH
Q 000777 1275 YA 1276 (1288)
Q Consensus 1275 y~ 1276 (1288)
|.
T Consensus 227 ~~ 228 (354)
T TIGR02142 227 WL 228 (354)
T ss_pred cc
Confidence 43
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=369.92 Aligned_cols=219 Identities=30% Similarity=0.526 Sum_probs=184.9
Q ss_pred ccEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeeCCCC--C
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1288)
Q Consensus 382 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 454 (1288)
..|+++|++++|+. +++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 36999999999963 469999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhcceEEEcCCCCCCchhHHHHHhcCCCCC--------------C-----HHHHHHHHHHcCHHHHHHhCCCCcccc
Q 000777 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--------------T-----TEEIRVATELANAAKFIDKLPQGIDTL 515 (1288)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--------------~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~ 515 (1288)
...+|+.++||+|++.+|+.||+||+.++.... . ++++.++++.. .+++++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQA-------ALWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHc-------CCchhhhHH
Confidence 556788999999999999999999999763210 0 11122222222 223344556
Q ss_pred ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEE-EEE
Q 000777 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMI-AVI 593 (1288)
Q Consensus 516 ~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i-~~l 593 (1288)
++..+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 67888999999999999999999999999999999999999999999999998777899999999999876 9997 578
Q ss_pred eCCEEeEecChhHHhcC
Q 000777 594 HRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 594 ~~G~i~~~g~~~~l~~~ 610 (1288)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998765
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=326.40 Aligned_cols=214 Identities=32% Similarity=0.534 Sum_probs=182.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHHHHhcceE
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1122 (1288)
+++++++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..|..|++|.|+|||.|+.+. +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 678999999974 33589999999999999999999999999999999999999999999999999774 577899999
Q ss_pred EEccCCCCc-hhhHHHHHhcCC-CCCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHH
Q 000777 1123 LVSQEPVLF-NDTIRANIAYGK-GGDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~V~Qd~~Lf-~gTIreNl~~g~-~~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1196 (1288)
+++-+.-|+ ..|.||||.|.. ..+.++. ++.+.-+..++.+. +|+.+| +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHh----hhchhhHHHHHHHHH
Confidence 999777777 569999998641 1123333 33333444444443 244444 699999999999999
Q ss_pred HcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhhhhcC
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMK-NRTTVVVAHRLSTIK-NADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1197 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~~ 1270 (1288)
|+++|+|+|||||||+||..+.+.+++-+++... +++||+-||-++.++ -||+|+++.+|+++..|++++|.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999998864 899999999999998 5999999999999999999999865
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=350.24 Aligned_cols=190 Identities=24% Similarity=0.373 Sum_probs=163.7
Q ss_pred EEEEEEEEECCCC-CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCceEEECCeeccCCCHHHHh
Q 000777 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD---PDAGHITLDGVEIQKLQLKWLR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~-~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR 1118 (1288)
+.++||+|.|+.. .++++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999853 35579999999999999999999999999999999999999 89999999999998765 4578
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCCCCCCCHHHHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHHHHHHHH
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrlaiARAL 1197 (1288)
++++|+||++.+|. .|++||+.++.. .. ..+....||||||||++|||||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-------~~----------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR-------CK----------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh-------hc----------------------cccchhhCCHHHHHHHHHHHHH
Confidence 89999999998886 599999976410 00 1234467999999999999999
Q ss_pred cCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEe-cCchhh-hhcCEEEEEeCCEEEEec
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVA-HRLSTI-KNADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1198 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~Ia-Hrl~ti-~~~DrI~vl~~G~Ive~G 1262 (1288)
+++|++|||||||++||+++++.+.+.|++..+ ++|+|+++ |+.+.+ +.||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 46766665 555666 459999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=373.97 Aligned_cols=204 Identities=22% Similarity=0.439 Sum_probs=173.0
Q ss_pred CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeeCCCCCHHHHhcceEEEcCCCCCCch-hHH
Q 000777 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIK 477 (1288)
Q Consensus 399 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 477 (1288)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999875 345567889999999998865 999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000777 478 DNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1288)
Q Consensus 478 ~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illlDEpts~lD~ 555 (1288)
||+.+... ..+..+..+ .+.+.++.+ |+.........+||||||||++|||||+.+|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99987422 112111111 122344444 555555667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHHhcC
Q 000777 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 556 ~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999885 46899999999999976 999999999999999999988654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=362.20 Aligned_cols=226 Identities=28% Similarity=0.482 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC------eeCCCCCHH
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG------INLKEFQLQ 456 (1288)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g------~~~~~~~~~ 456 (1288)
.++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| +++...+..
T Consensus 10 ~i~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIN---DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecC---CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 589999999996 35699999999999999999999999999999999999999997666665 566666677
Q ss_pred HHhcceEEEcCCCCCCch-hHHHHHhcCCCC--C-CHHH----HHHHHHHcCHHHHHHhCCCCccccccCCCCCCChHHH
Q 000777 457 WIRKKIGLVSQEPVLFTG-SIKDNIAYGKDD--A-TTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~-~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 528 (1288)
.+|++++|++|+|.+|.+ |++||+.++... . ..++ +.++++..++.+++ ....+..+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 788899999999999875 999999975321 1 1222 22222322221111 1234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1288)
Q Consensus 529 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1288)
||++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999965 999999999999999999999
Q ss_pred hcCCCchHHHH
Q 000777 608 VEDPEGAYSQL 618 (1288)
Q Consensus 608 ~~~~~~~~~~~ 618 (1288)
.+++...|.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 87655445443
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=355.35 Aligned_cols=205 Identities=33% Similarity=0.464 Sum_probs=173.9
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCeeccCCCHH---HHh
Q 000777 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1118 (1288)
++++||+++|++.. ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|++||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999999876643 468
Q ss_pred cceEEEccCCCCch-hhHHHHHhcCCC--CCCCHH----HHHHHHHHhchhHHHHhhhccccccccCCCCCCChhHHHHH
Q 000777 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG--GDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1119 ~~i~~V~Qd~~Lf~-gTIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQrQrl 1191 (1288)
+.++|+||++.+|. .|+.||+.++.. ...+.+ ++.++++..++.+++ .....+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL-----------DYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHH
Confidence 89999999999987 799999986421 112222 344555555554443 344468999999999
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhhcCEEEEEeCCEE
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVI 1258 (1288)
Q Consensus 1192 aiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~I 1258 (1288)
+||||++++|++|||||||++||+++...+.+.|++..+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998763 7999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=361.16 Aligned_cols=228 Identities=29% Similarity=0.453 Sum_probs=183.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCceEEECCee-----ccCCCHHH
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE-----IQKLQLKW 1116 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~~~~ 1116 (1288)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 76666543
Q ss_pred ----HhcceEEEccCCC--C-chhhHHHHHhcCC--CCCCCHHHHHHHHHHhchhHHHHhhhcccc-ccccCCCCCCChh
Q 000777 1117 ----LRQQMGLVSQEPV--L-FNDTIRANIAYGK--GGDATEAEIQAASEMANAHKFICSLQQGYD-TMVGERGLQLSGG 1186 (1288)
Q Consensus 1117 ----lR~~i~~V~Qd~~--L-f~gTIreNl~~g~--~~~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgG 1186 (1288)
+++.++|++|++. + +..|+.+|+.+.. .......+. ...+.+++..+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3467999999984 2 3458888875310 000011111 11223444444 232 3456667899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 000777 1187 QKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263 (1288)
Q Consensus 1187 QrQrlaiARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~Gt 1263 (1288)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 7899999999999975 99999999999999999
Q ss_pred hhhhhcCCCcHHHHHH
Q 000777 1264 HENLINIPDGFYASLI 1279 (1288)
Q Consensus 1264 ~~eLl~~~~g~y~~L~ 1279 (1288)
++++..++...|.+++
T Consensus 233 ~~~~~~~~~~~~~~~~ 248 (253)
T TIGR02323 233 TDQVLDDPQHPYTQLL 248 (253)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999876555565543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1288 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-104 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-97 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 9e-79 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-96 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 8e-78 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-74 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-71 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-74 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-71 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-71 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-59 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-71 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 8e-64 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-66 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-61 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-61 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-61 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-60 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-60 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-60 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-59 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-59 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-58 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-56 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-55 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-53 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-45 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-51 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-51 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-50 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-49 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-23 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-22 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-21 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-22 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-22 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-21 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-22 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-22 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-21 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-20 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-21 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-20 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-20 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-20 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-20 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-20 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-19 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 8e-18 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-19 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-19 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-19 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 8e-19 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-18 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-18 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-18 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-16 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-18 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 6e-18 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 7e-18 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-17 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 4e-17 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 8e-17 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-16 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-13 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-12 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-16 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 4e-16 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 9e-13 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-16 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-15 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-14 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-14 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-14 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-14 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-14 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-14 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-14 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 8e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-11 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-13 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-13 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-13 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-12 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-10 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-10 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-09 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-09 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-08 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 8e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 8e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 4e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 5e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 6e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-06 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-05 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 6e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 8e-05 | ||
| 3zqj_A | 993 | Mycobacterium Tuberculosis Uvra Length = 993 | 2e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1753 bits (4542), Expect = 0.0
Identities = 512/1293 (39%), Positives = 785/1293 (60%), Gaps = 39/1293 (3%)
Query: 15 SQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLC 74
++ G+ K ++ EK +V +F +A D M++G++ AI +G+
Sbjct: 4 EEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVA 63
Query: 75 LPLMTLLFGDLINTFGDNQNNSET----------------VDKVSKVAVKFVYLGIGSGI 118
LPLM L+FGD+ ++F N S+ ++++ A + +G G I
Sbjct: 64 LPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLI 123
Query: 119 ASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAM 178
+++QV+ W + RQ +IR + I+ Q++ +FD GE+ R++ D I + +
Sbjct: 124 VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHD-VGELNTRLTDDVSKINEGI 182
Query: 179 GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
G+K+G F Q MATF GGF+I F +GW LTLV+L+ P+L +S G+ A ++S + + A
Sbjct: 183 GDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA 242
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298
YAKA +V E+ + +IRTV +F G+K+ + Y L A + G+++ + A I +G L++
Sbjct: 243 YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLI 302
Query: 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMF 358
+ SYAL+ WYG L++ + Y+ GQV+ V +VL G+ S+G+ASP + AF + AA+++F
Sbjct: 303 YASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVF 362
Query: 359 ETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALV 418
+ I+ KP ID++ G D+I+G++E ++++FSYP+R QI G ++ + SG T ALV
Sbjct: 363 KIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALV 422
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
G SG GKST + L++R YDP G V IDG +++ ++++R+ IG+VSQEPVLF +I +
Sbjct: 423 GNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482
Query: 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
NI YG++D T +EI A + ANA FI KLP DTLVGE G QLSGGQKQRIAIARA++
Sbjct: 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
++P+ILLLDEATSALD ESE VVQ ALD+ RTT+++AHRLSTVRNAD+IA G I
Sbjct: 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSI 658
VE+G H +L+ + +G Y +L+ Q A E E + + + + +
Sbjct: 603 VEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKD--------EIDNLDMSSKD 653
Query: 659 SRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEI 718
S S I S + + + +E P R+ LN E
Sbjct: 654 SGSSLIRRRSTRKSICGPHDQDRKLSTK---------EALDEDVPPASFWRILKLNSTEW 704
Query: 719 PVILAGTIAAMANGVILPIYGLLISSVIETFFKP--PHELKKDSRFWALIYLALGAGSFL 776
P + G A+ NG + P + ++ S V+ F P +++S ++L++L LG SF+
Sbjct: 705 PYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFI 764
Query: 777 LSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRAL 836
Q + F AG L +R+R M F+ ++ +VSWFD+P++++GA+ RL+ DAA V+
Sbjct: 765 TFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGA 824
Query: 837 VGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKM 896
G LA I QNI+ G+II+ WQL L++L ++P+I ++G +MK + G + K
Sbjct: 825 TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKK 884
Query: 897 KYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956
+ E + ++A +A+ + RTV S E+K +Y + + P + +++ V G F + +
Sbjct: 885 ELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAM 944
Query: 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASI 1016
++ YAA+F GA LV TF +V VF ++ A+ + Q SSF+ D KA +A+ I
Sbjct: 945 MYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHI 1004
Query: 1017 FAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVAL 1076
II++ +ID G ++G ++ V F YP+RP + V + L+L+++ G+T+AL
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064
Query: 1077 VGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136
VG SG GKSTVV LL+RFYDP AG + LDG EI++L ++WLR Q+G+VSQEP+LF+ +I
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Query: 1137 ANIAYGK-GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIAR 1195
NIAYG + EI A++ AN H+FI SL Y+T VG++G QLSGGQKQR+AIAR
Sbjct: 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184
Query: 1196 AIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKN 1255
A+V+ P ILLLDEATSALD ESE+VVQ+ALD+ + RT +V+AHRLSTI+NAD+I V++N
Sbjct: 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQN 1244
Query: 1256 GVIVEKGKHENLINIPDGFYASLIALHSSASTS 1288
G + E G H+ L+ G Y S++++ + A S
Sbjct: 1245 GKVKEHGTHQQLLA-QKGIYFSMVSVQAGAKRS 1276
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 740 bits (1913), Expect = 0.0
Identities = 226/635 (35%), Positives = 355/635 (55%), Gaps = 5/635 (0%)
Query: 4 ESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMII 63
+S + + + S K E F+++ S + ++
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLN-STEWPYFVV 709
Query: 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123
G AI NG P +++F ++ F + + ++ F+ LGI S I FLQ
Sbjct: 710 GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769
Query: 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETN-TGEVVGRMSGDTVLIQDAMGEKV 182
+ GE R+R + K++LRQDV++FD+ N TG + R++ D ++ A G ++
Sbjct: 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL 829
Query: 183 GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKA 242
Q +A G +I+ I GW LTL++L+ +P++A++G V M+S + + + +
Sbjct: 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889
Query: 243 ASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302
+ + I + RTV S T E++ + Y + L Y++ +++ GI +++ SY
Sbjct: 890 GKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSY 949
Query: 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362
A + +G L+ ++ V+ V A++ G+M++G+ S + +A + I
Sbjct: 950 AAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
+ PEID+Y T+G + + G+++ V F+YP RP+ + G S+ + G T ALVG SG
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
GKSTV+ L+ERFYDP AG V +DG +K+ +QW+R ++G+VSQEP+LF SI +NIAY
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 483 GKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
G + + EEI A + AN +FID LP +T VG+ GTQLSGGQKQRIAIARA+++
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
P ILLLDEATSALD ESEKVVQEALD+ RT +++AHRLST++NAD+I VI GK+ E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
GTH +L+ +G Y ++ +Q K S
Sbjct: 1250 HGTHQQLLA-QKGIYFSMVSVQAGAKRSYVHHHHH 1283
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 557 bits (1438), Expect = 0.0
Identities = 193/573 (33%), Positives = 307/573 (53%), Gaps = 13/573 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFF--KPPHELKKDSRFWAL 765
RRL P ++ IA + N L+ +++ F L
Sbjct: 14 RRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIG 73
Query: 766 IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGAR 825
+ + G S++ SY + K++ +R F ++ M V++FD+ S+G + +R
Sbjct: 74 LMILRGITSYI----SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSR 127
Query: 826 LSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMK 885
++ D+ V + AL +V+ ++ I+ F SWQL++I++V+ P++ ++ K
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187
Query: 886 FMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945
+ S + + + + A + + V F +E + + K G++
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSD 1005
S + A YA + T + VF S+ + ++ ++
Sbjct: 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLN 1065
+ +A ++FAI+D E + D E +++ G++E +V+F YP R +V R++N
Sbjct: 308 FQRGMAACQTLFAILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNIN 363
Query: 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVS 1125
LKI AGKTVALVG SGSGKST+ SL+ RFYD D GHI +DG ++++ L LR Q+ LVS
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423
Query: 1126 QEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185
Q LFNDT+ NIAY + + + +I+ A+ MA A FI + G DT++GE G+ LSG
Sbjct: 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483
Query: 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIK 1245
GQ+QR+AIARA+++D IL+LDEATSALD ESER +Q ALD + KNRT++V+AHRLSTI+
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 1246 NADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
AD I VV++G+IVE+G H L+ G YA L
Sbjct: 544 QADEIVVVEDGIIVERGTHSELLAQ-HGVYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 518 bits (1337), Expect = e-171
Identities = 178/564 (31%), Positives = 300/564 (53%), Gaps = 11/564 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ I I N M L L++ + + + + + L I GI
Sbjct: 26 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGIT 81
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++ C + +R ++ VAFFD +TG ++ R++ D+ + +
Sbjct: 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSS 140
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ ++ A+ +G F++ F W L+++++ P+++++ V++ +S Q
Sbjct: 141 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 200
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ + EQ + + V F G++ + K G++ A+ I ++ LI
Sbjct: 201 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 260
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ A ++ + + G + V +++ L + + F G AA +F
Sbjct: 261 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 320
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D +++D GD+E R+V F+YP R ++ I +G T ALVG
Sbjct: 321 ILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVG 376
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+SGSGKST+ SLI RFYD G +L+DG +L+E+ L +R ++ LVSQ LF ++ +N
Sbjct: 377 RSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436
Query: 480 IAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
IAY + + + E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QRIAIARA+L
Sbjct: 437 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+D IL+LDEATSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I V+ G I
Sbjct: 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGII 556
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQ 622
VE+GTHS+L+ G Y+QL ++Q
Sbjct: 557 VERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 549 bits (1418), Expect = 0.0
Identities = 181/575 (31%), Positives = 296/575 (51%), Gaps = 17/575 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+RL + ++ TIA + N L+ +++ F +S F ++
Sbjct: 14 KRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGF-----GNAESNFLRILP 68
Query: 768 LALGAGSFLLSPA----QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
+ G + SY + ++ ++R F +HM V +FD+ S+G +
Sbjct: 69 FMI-LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLL 125
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883
+R++ D+ V AL IV+ ++ L + F SWQL+L+++V+ P++ +
Sbjct: 126 SRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFV 185
Query: 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
K + S + + + A + + V S+ +E + + K + + ++
Sbjct: 186 SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245
Query: 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFS 1003
+ A + + + T VF ++ + +S +
Sbjct: 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVT 305
Query: 1004 SDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRD 1063
S+ + +A ++F ++D E++ D E V GE+++ V+F Y + +
Sbjct: 306 SEFQRGMAACQTLFGLMDLETERDNGKYE---AERVNGEVDVKDVTFTYQGK-EKPALSH 361
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
++ I GKTVALVG SGSGKST+ +L RFYD D+G I LDG +++ +L LR+ L
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421
Query: 1124 VSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQL 1183
VSQ LFNDTI NIAY G+ T +I+ A+ A+A +FI ++ QG DT++GE G L
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481
Query: 1184 SGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLST 1243
SGGQ+QRVAIARA+++D +L+LDEATSALD ESER +Q ALD + KN+T +V+AHRLST
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST 541
Query: 1244 IKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
I+ AD I VV G I+E+G+H +L+ DG YA L
Sbjct: 542 IEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQL 575
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 507 bits (1307), Expect = e-166
Identities = 172/564 (30%), Positives = 294/564 (52%), Gaps = 11/564 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+++ +I + N M L L++ N + + + + + L G++
Sbjct: 26 GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLS 81
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
F C ++R + V FFD E+ TG ++ R++ D+ + A
Sbjct: 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES-TGGLLSRITYDSEQVAGATS 140
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ ++ A+ +G + F W L+LV++ P++A + ++ K+S Q A
Sbjct: 141 RALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAM 200
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
S EQ + + V S+ G++ + K + + ++ A I ++ +I
Sbjct: 201 GHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIAS 260
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ ++ + G V A+ L + S F G AA +F
Sbjct: 261 LALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFG 320
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D + + G+++++DV F+Y + + S S SI G T ALVG
Sbjct: 321 LMDLETERD---NGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVG 376
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+SGSGKST+ +L RFYD +G + +DG ++++++L +R+ LVSQ LF +I +N
Sbjct: 377 RSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436
Query: 480 IAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
IAY + + T E+I A A+A +FI+ +PQG+DT++GE+GT LSGGQ+QR+AIARA+L
Sbjct: 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+D +L+LDEATSALD ESE+ +Q ALD + N+T +++AHRLST+ AD I V+ G+I
Sbjct: 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEI 556
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQ 622
+E+G H+ L+ +GAY+QL R+Q
Sbjct: 557 IERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 525 bits (1356), Expect = e-173
Identities = 183/578 (31%), Positives = 284/578 (49%), Gaps = 15/578 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+R KP I A I + I + LLI I+ + I
Sbjct: 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 768 LALG-AGSFLLSPA----QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
+ + ++ P + Y NK++ IR + + + ++ + G +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQV 120
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
+R+ D + + L I + T L I F +L L L + P ++ Y
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
++ + + E ++ V I V SF E+ + + KK + ++
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSS 1001
+ F A + GA L G T + F G + + +
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLVA 299
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQV 1060
+ ++ ++ +F +ID + I + G +E +G I++ HVSF+Y + +
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPI 356
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
+D+NL I G+TVA VG SG GKST+++L+ RFYD +G I +DG I+ LR Q
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERG 1180
+GLV Q+ +LF+DT++ NI G+ AT+ E+ A++MANAH FI +L QGYDT VGERG
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475
Query: 1181 LQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHR 1240
++LSGGQKQR++IAR + +P IL+LDEATSALD ESE ++Q+ALD + K+RTT++VAHR
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
Query: 1241 LSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
LSTI +AD I V++NG IVE G H LI G Y L
Sbjct: 536 LSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHL 572
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 491 bits (1266), Expect = e-160
Identities = 175/569 (30%), Positives = 264/569 (46%), Gaps = 13/569 (2%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTF---GDNQNNSETVDKVSKVAVKFVYLGIGS 116
+ I I L+ LL I+ + + + + I
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 117 GIASFLQVTCWM-ITGERQATRIRG-LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLI 174
F++ T + IR LY + F+ N G+V+ R+ D
Sbjct: 75 PPIEFIR-QYLAQWTSNKILYDIRKKLYNH-LQALSARFYAN-NQVGQVISRVINDVEQT 131
Query: 175 QDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR 234
+D + + T + I F LTL L P ++ V + K++
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 235 GQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMV 294
A A+ + + + I V SF E N+ K ++ +
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 295 MLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354
+ + + G L + G + + + L + A+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 355 FKMFETINRKPEIDAYDTKGKI-LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGT 413
++F+ I+ +I + G ++ +G I++ V F Y I ++SI G
Sbjct: 312 DRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGE 368
Query: 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473
T A VG SG GKST+I+LI RFYD +G++LIDG N+K+F +R +IGLV Q+ +LF+
Sbjct: 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 428
Query: 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
++K+NI G+ AT EE+ A ++ANA FI LPQG DT VGE G +LSGGQKQR++I
Sbjct: 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488
Query: 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593
AR L +P IL+LDEATSALD ESE ++QEALD + +RTT+IVAHRLST+ +AD I VI
Sbjct: 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 548
Query: 594 HRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
G IVE GTH +L+ +GAY L +Q
Sbjct: 549 ENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 494 bits (1275), Expect = e-166
Identities = 108/265 (40%), Positives = 154/265 (58%), Gaps = 4/265 (1%)
Query: 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS 1085
+ P ++KG ++ VSF YP+ P+VQV + L + GK ALVG +GSGKS
Sbjct: 1 MSPLSG-SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 1086 TVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145
TV +LLQ Y P G + LDG + + +L Q+ V QEP+LF + R NIAYG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 1146 DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILL 1205
T EI A + + AH FI QGYDT VGE G QLSGGQ+Q VA+ARA+++ P++L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 1206 LDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGK 1263
LD ATSALDA ++ VQ L + +RT +++ +LS + A I +K G + E+G
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 1264 HENLINIPDGFYASLIALHSSASTS 1288
H L+ G Y S++ ++ S +
Sbjct: 240 HLQLME-RGGCYRSMVEALAAPSDA 263
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 462 bits (1191), Expect = e-154
Identities = 101/268 (37%), Positives = 153/268 (57%), Gaps = 5/268 (1%)
Query: 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426
+ +++G ++ +DV F+YP PN Q+ G + ++ G ALVG +GSGKS
Sbjct: 1 MSPLS-GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-D 485
TV +L++ Y P G+VL+DG L ++ ++ ++ V QEP+LF S ++NIAYG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
T EEI + A FI PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 546 LDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
LD ATSALDA ++ VQ L +RT +++ +LS A I + G + E+GT
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 604 HSKLVEDPEGAYSQLIRLQEANKESEQT 631
H +L+E G Y ++ A ++
Sbjct: 240 HLQLME-RGGCYRSMVEALAAPSDAAAH 266
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 451 bits (1162), Expect = e-150
Identities = 110/247 (44%), Positives = 166/247 (67%), Gaps = 2/247 (0%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+I ++ F+Y V + ++NL I+ G+ + +VG SGSGKST+ L+QRFY
Sbjct: 2 HHHHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
P+ G + +DG ++ WLR+Q+G+V Q+ VL N +I NI+ + ++ A+
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 119
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
++A AH FI L++GY+T+VGE+G LSGGQ+QR+AIARA+V +PKIL+ DEATSALD E
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1217 SERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276
SE V+ + ++ K RT +++AHRLST+KNAD I V++ G IVE+GKH+ L++ P+ Y+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Query: 1277 SLIALHS 1283
L L S
Sbjct: 240 YLYQLQS 246
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 444 bits (1145), Expect = e-147
Identities = 116/244 (47%), Positives = 161/244 (65%), Gaps = 1/244 (0%)
Query: 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
DI R++ F Y I ++SI G +VG+SGSGKST+ LI+RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
+ G+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +L
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A A FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
V+ + +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 619 IRLQ 622
+LQ
Sbjct: 242 YQLQ 245
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 440 bits (1135), Expect = e-146
Identities = 108/244 (44%), Positives = 156/244 (63%), Gaps = 3/244 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ HV F Y Q+ RD++ + + +A G SG GKST+ SLL+RFY P AG I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
T+DG I + L+ R Q+G VSQ+ + TIR N+ YG GD T+ ++ ++A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
F+ ++ +T VGERG+++SGGQ+QR+AIARA +++PKIL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1223 DALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALH 1282
ALD +MK RTT+V+AHRLSTI +AD I ++ G I GKH L+ YA ++
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 1283 SSAS 1286
+
Sbjct: 239 LTVG 242
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 414 bits (1067), Expect = e-136
Identities = 105/245 (42%), Positives = 156/245 (63%), Gaps = 4/245 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R V F+Y QI S + A G SG GKST+ SL+ERFY P AGE+
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAA 502
IDG + L+ R +IG VSQ+ + G+I++N+ YG + D T E++ +LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
F++ +P ++T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ALD +M RTT+++AHRLST+ +AD I I +G+I G H++LV Y++ + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 623 EANKE 627
+
Sbjct: 239 LTVGQ 243
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 417 bits (1074), Expect = e-137
Identities = 108/261 (41%), Positives = 173/261 (66%), Gaps = 4/261 (1%)
Query: 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS 1085
++ + + IE V+F YP + + + + +N I +G T ALVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 1086 TVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145
T+ LL RFYD + G I + G + K +R +G+V Q+ +LFN+TI+ NI YGK
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL- 118
Query: 1146 DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILL 1205
DAT+ E+ A++ A + FI +L + +DT+VG +G++LSGG++QR+AIAR ++KDPKI++
Sbjct: 119 DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 1206 LDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHE 1265
DEATS+LD+++E + Q A++ + KNRT +++AHRLSTI +A+ I ++ G IVEKG H+
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHK 238
Query: 1266 NLINIPDGFYASLIALHSSAS 1286
+L+ + +G YA + + S +
Sbjct: 239 DLLKL-NGEYAEMWNMQSGGN 258
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 395 bits (1016), Expect = e-128
Identities = 116/261 (44%), Positives = 174/261 (66%), Gaps = 3/261 (1%)
Query: 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426
++++ +IE DV FSYP + N + + I SGTT ALVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD 486
T+ L+ RFYD + G++ I G N+ ++ IR IG+V Q+ +LF +IK NI YGK D
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
AT EE+ AT+ A FI+ LP+ DT+VG G +LSGG++QRIAIAR +LKDP+I++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606
DEATS+LD+++E + Q+A++ + NRT +I+AHRLST+ +A+ I ++++GKIVEKGTH
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 607 LVEDPEGAYSQLIRLQEANKE 627
L++ G Y+++ +Q +
Sbjct: 240 LLKL-NGEYAEMWNMQSGGND 259
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 428 bits (1102), Expect = e-136
Identities = 182/596 (30%), Positives = 308/596 (51%), Gaps = 25/596 (4%)
Query: 691 PAGPSQPTEEVAPEVPT-RRL-AYLN--KPEIPVILAGTIAAMANGVILPIYGLLISSVI 746
P GP + T RRL YL + ++ + GV+ P LI I
Sbjct: 8 PHGPILEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPY---LIGKTI 64
Query: 747 ETFFKPP--HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKV 804
+ F P L + IY +L Q ++ R+R FEK+
Sbjct: 65 DVVFVPRRFDLLPRYMLILGTIYALTSLLFWL----QGKIMLTLSQDVVFRLRKELFEKL 120
Query: 805 IHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864
+ V +FD G I +R+ D ++ ++G+++ + I T A +I+ F +
Sbjct: 121 QRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178
Query: 865 LALIILVMLPL-IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEK 923
L+L+ L ++PL + ++ + K F + ++ + + + + + + F EEK
Sbjct: 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGII-EEDISGLTVIKLFTREEK 237
Query: 924 VMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVF 983
M+ + + E+ K G + + SG + +A G L T +
Sbjct: 238 EMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIA 297
Query: 984 KVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042
F + +++ S+ + A ++A IF I+D E + D D L +V+GE
Sbjct: 298 -TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAVELREVRGE 354
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V F Y V +D+ I+ G+ VALVG +GSGK+T+V+LL RFYD D G I
Sbjct: 355 IEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG++I+K++ LR +G+V Q+ +LF+ T++ N+ YG AT+ EI+ A+++ ++
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSD 471
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
FI L +GY+T++ + G LS GQ+Q +AI RA + +PKIL+LDEATS +D ++E+ +Q
Sbjct: 472 HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531
Query: 1223 DALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
A+ ++M+ +T++++AHRL+TIKNAD+I V+++G IVE GKH+ LI GFY L
Sbjct: 532 AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYEL 586
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-128
Identities = 165/571 (28%), Positives = 303/571 (53%), Gaps = 11/571 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ + + + L L G I+ + D + + + + + +
Sbjct: 38 TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR----FDLLPRYMLILGTIYALTSLL 93
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
+LQ + + R+R + + R V FFD T G+++ R+ D I + +G
Sbjct: 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLG 152
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ +F + T G ++ F +L+LV LS +PL + +++ K Q
Sbjct: 153 NSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVL 212
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ ++E+ I + + FT E++ M + + + K G + + +G+ ++ ++
Sbjct: 213 GQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNN 272
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+AL +GG L L++ G + + + L E S + A+A ++FE
Sbjct: 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D D L ++RG+IE ++V+FSY + + + I G ALVG
Sbjct: 333 ILDLEEEKD--DPDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVG 388
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+GSGK+T+++L+ RFYD G++L+DGI++++ + +R IG+V Q+ +LF+ ++K+N
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
+ YG AT EEI+ A +L ++ FI LP+G +T++ ++G LS GQ+Q +AI RA L
Sbjct: 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599
+P+IL+LDEATS +D ++EK +Q A+ ++M +T++I+AHRL+T++NAD+I V+ G+IV
Sbjct: 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568
Query: 600 EKGTHSKLVEDPEGAYSQLIRLQ-EANKESE 629
E G H +L++ G Y +L Q E E
Sbjct: 569 EMGKHDELIQK-RGFYYELFTSQYGLVVEKE 598
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 388 bits (999), Expect = e-125
Identities = 129/274 (47%), Positives = 179/274 (65%), Gaps = 7/274 (2%)
Query: 1016 IFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTV 1074
+F ++ E+++ D G L KG IE +V F Y + +D++ + G+T+
Sbjct: 28 MFDLLKEETEV--KDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQTL 83
Query: 1075 ALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134
ALVG SG+GKST++ LL RFYD +G I +DG +I ++ LR +G+V Q+ VLFNDT
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 1135 IRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194
I NI YG+ A E++AA++ A H I + +GY T VGERGL+LSGG+KQRVAIA
Sbjct: 144 IADNIRYGRV-TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVK 1254
R I+K P I+LLDEATSALD +ER +Q +L +V NRTT+VVAHRLST+ NAD I V+K
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262
Query: 1255 NGVIVEKGKHENLINIPDGFYASLIALHSSASTS 1288
+G IVE+G+HE L++ G YA + L +
Sbjct: 263 DGCIVERGRHEALLSR-GGVYADMWQLQQGQEET 295
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-119
Identities = 120/276 (43%), Positives = 169/276 (61%), Gaps = 6/276 (2%)
Query: 356 KMFETINRKPEIDAYDTKG-KILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414
MF+ + + E+ D G L +G IE +V+FSY + S ++ G T
Sbjct: 27 NMFDLLKEETEVK--DLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQT 82
Query: 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474
ALVG SG+GKST++ L+ RFYD +G + IDG ++ + +R IG+V Q+ VLF
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
+I DNI YG+ A +E+ A + A I P+G T VGE G +LSGG+KQR+AIA
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594
R ILK P I+LLDEATSALD +E+ +Q +L ++ NRTT++VAHRLSTV NAD I VI
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262
Query: 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
G IVE+G H L+ G Y+ + +LQ+ +E+ +
Sbjct: 263 DGCIVERGRHEALLSR-GGVYADMWQLQQGQEETSE 297
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 350 bits (901), Expect = e-107
Identities = 137/513 (26%), Positives = 259/513 (50%), Gaps = 19/513 (3%)
Query: 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
++ L + + + F + A +R F KV+ +S + + ++
Sbjct: 65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSL 122
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
RL+ D ++ LV L +V+ G+++A + + +L+ +++ ++P I +
Sbjct: 123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVW 182
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
K + +E ++V + + +R V +F EE + ++K E+ ++ I
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISA 242
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV-------FKVFFSLTMTAIG 995
+ F++ A + G LV + + + ++ FSL M
Sbjct: 243 FSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNI 302
Query: 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR 1055
++ +A ++A + +++ + I+ +D + L +V+G + +V F+Y
Sbjct: 303 LNFIV-------RASASAKRVLEVLNEKPAIEEADNALA-LPNVEGSVSFENVEFRYFE- 353
Query: 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115
V +N ++ G VA++GE+GSGKST+++L+ R DP+ G + +D ++++ ++LK
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLK 413
Query: 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
LR + V QE VLF+ TI+ N+ +G+ DAT+ EI A+++A H FI SL +GYD+
Sbjct: 414 DLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSR 472
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTV 1235
V G SGGQKQR++IARA+VK PK+L+LD+ TS++D +E+ + D L R K TT
Sbjct: 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTF 532
Query: 1236 VVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI 1268
++ ++ T AD I V+ G + G H+ L+
Sbjct: 533 IITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 347 bits (893), Expect = e-106
Identities = 150/572 (26%), Positives = 269/572 (47%), Gaps = 26/572 (4%)
Query: 57 DTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGS 116
L + + + L P + D GD V K + + + +
Sbjct: 24 FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-------FSLVLKTGILMLIVALIG 76
Query: 117 GIASFLQVTCWMITGERQATRIRG-LYLKTILRQDVAFFD-NETNTGEVVGRMSGDTVLI 174
+ + +R L+ K + + N +T ++ R++ D +
Sbjct: 77 AVGGIGCTVFASYASQNFGADLRRDLFRKV---LSFSISNVNRFHTSSLITRLTNDVTQL 133
Query: 175 QDAMGEKVGKFLQLMA----TFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISK 230
Q+ V L+++ F+GG ++A L+ V++ IP + + + +
Sbjct: 134 QNL----VMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNP 189
Query: 231 MSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIG 290
+ + Q + + VV + + +R V +F E+ N++K + +S +
Sbjct: 190 LFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFA 249
Query: 291 LGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAG 350
L + + IV +W+GG L+ G ++ ++ SL L+
Sbjct: 250 LPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRA 309
Query: 351 QAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISIS 410
A+A ++ E +N KP I L ++ G + +V F Y + + SG + S+
Sbjct: 310 SASAKRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVK 367
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
G+ A++G++GSGKST+++LI R DP+ G V +D ++++ +L+ +R I V QE V
Sbjct: 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427
Query: 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
LF+G+IK+N+ +G++DAT +EI A ++A FI LP+G D+ V G SGGQKQR
Sbjct: 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI 590
++IARA++K P++L+LD+ TS++D +EK + + L R TT I+ ++ T AD I
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 547
Query: 591 AVIHRGKIVEKGTHSKLVED----PEGAYSQL 618
V+H GK+ GTH +L+E E SQ
Sbjct: 548 LVLHEGKVAGFGTHKELLEHCKPYREIYESQF 579
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 2e-63
Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 6/311 (1%)
Query: 381 RGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
G + ++D+ Y I S SIS G L+G++GSGKST++S R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
GE+ IDG++ L+ RK G++ Q+ +F+G+ + N+ + +EI +
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
I++ P +D ++ + G LS G KQ + +AR++L +ILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+++ L + + T ++ R+ + D VI K+ + + +L P +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 620 RLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLP 679
+ L + + SR +G + I LP
Sbjct: 253 I-GSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLP 311
Query: 680 SGQFADTALGE 690
S GE
Sbjct: 312 SDIADVILEGE 322
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 9e-63
Identities = 57/250 (22%), Positives = 116/250 (46%), Gaps = 6/250 (2%)
Query: 1040 KGEIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
G++ + ++ KY + +++ I G+ V L+G +GSGKST++S R + +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
G I +DGV + L+ R+ G++ Q+ +F+ T R N+ ++ EI ++
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD--PNAAHSDQEIWKVADE 131
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
I D ++ + G LS G KQ + +AR+++ KILLLDE ++ LD +
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 1219 RVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278
++++ L + + T ++ R+ + D V++ + + L + P + +
Sbjct: 192 QIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAG 251
Query: 1279 IALHSSASTS 1288
+
Sbjct: 252 FIGSPKMNFL 261
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-46
Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 35/251 (13%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
E+ + +V+ + V +D+N KI G+ +A+ G +G+GK++++ ++ +P
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDAT--EAEIQAASE 1157
G I G ++ SQ + TI+ NI +G D + I+A
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKA--- 106
Query: 1158 MANAHKFICSLQQ-------GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
C L++ + ++GE G+ LSGGQ+ R+++ARA+ KD + LLD
Sbjct: 107 --------CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158
Query: 1211 SALDAESER-VVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
LD +E+ + + + ++M N+T ++V ++ +K AD I ++ G G L N
Sbjct: 159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218
Query: 1270 IPDGFYASLIA 1280
+ F + L+
Sbjct: 219 LQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 7e-44
Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 21/242 (8%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
++ + +V + + + I G A+ G +G+GK++++ +I +P
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
G++ G +I SQ + G+IK+NI +G D+ + A +L
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ I K + + ++GE G LSGGQ+ RI++ARA+ KD + LLD LD +E
Sbjct: 110 E---EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 559 K-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
K + + + ++M N+T ++V ++ ++ AD I ++H G GT S+L + +S
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSS 225
Query: 618 LI 619
+
Sbjct: 226 KL 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 1e-43
Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 44/261 (16%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + + +F + +R D + I G VA+VG+ G GKS+++S L D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDAT--EAEIQAASEM 1158
H+ + G + V Q+ + ND++R NI +G + + IQA
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQA---- 103
Query: 1159 ANAHKFICSLQQ-------GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
C+L G T +GE+G+ LSGGQKQRV++ARA+ + I L D+ S
Sbjct: 104 -------CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156
Query: 1212 ALDAESERVVQDALDRVM------KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHE 1265
A+DA V + + V+ KN+T ++V H +S + D+I V+ G I E G ++
Sbjct: 157 AVDAH---VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQ 213
Query: 1266 NLINIPDGFYASLIALHSSAS 1286
L+ DG +A + ++S
Sbjct: 214 ELLA-RDGAFAEFLRTYASHH 233
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 2e-42
Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 23/254 (9%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I +R+ F++ AR + +G + SI G A+VGQ G GKS+++S + D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELA 499
V I G + V Q+ + S+++NI +G ++ + A L
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SE 558
++ LP G T +GE G LSGGQKQR+++ARA+ + I L D+ SA+DA +
Sbjct: 108 ---PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 559 KVVQEALDR--IMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ + + ++ N+T ++V H +S + D+I V+ GKI E G++ +L+ +GA++
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFA 223
Query: 617 QLIRLQEANKESEQ 630
+ +R ++
Sbjct: 224 EFLRTYASHHHHHH 237
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 4e-43
Identities = 66/277 (23%), Positives = 122/277 (44%), Gaps = 36/277 (12%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
E + +++ + K +SF S V +D+N KI G+ +A+ G +G
Sbjct: 15 EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
+GK++++ ++ +P G I G ++ SQ + TI+ NI
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI-I 120
Query: 1142 GKGGDAT--EAEIQAASEMANAHKFICSLQQ-------GYDTMVGERGLQLSGGQKQRVA 1192
G D + I+A C L++ + ++GE G+ LSGGQ+ R++
Sbjct: 121 GVSYDEYRYRSVIKA-----------CQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 1193 IARAIVKDPKILLLDEATSALDAESERVV-QDALDRVMKNRTTVVVAHRLSTIKNADMIA 1251
+ARA+ KD + LLD LD +E+ + + + ++M N+T ++V ++ +K AD I
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 1252 VVKNGVIVEKGKHENLINIPDGFYASLIALHSSASTS 1288
++ G G L N ++S + S
Sbjct: 230 ILHEGSSYFYGTFSELQN-LRPDFSSKLMGCDSFDQF 265
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 4e-42
Identities = 68/300 (22%), Positives = 128/300 (42%), Gaps = 30/300 (10%)
Query: 353 AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSG 412
E E + + + + + + + I G
Sbjct: 10 VTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERG 64
Query: 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472
A+ G +G+GK++++ +I +P G++ G +I SQ +
Sbjct: 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIM 111
Query: 473 TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
G+IK+NI G D+ + A +L + I K + + ++GE G LSGGQ+ R
Sbjct: 112 PGTIKENI-IGVSYDEYRYRSVIKACQLE---EDISKFAEKDNIVLGEGGITLSGGQRAR 167
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADM 589
I++ARA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 227
Query: 590 IAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSS 649
I ++H G GT S+L +S + ++ + +R++ I E+L S
Sbjct: 228 ILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFDQFSA----ERRNSILTETLHRFS 282
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 8e-42
Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 31/238 (13%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +V + + ++NL++ G+ V ++G +GSGK+T++ + P +G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF--NDTIRANIAYG---KGGDATEAEIQAAS 1156
I ++G+E++K+ R + + P + T+ + KG D
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLD--RDLFLEML 112
Query: 1157 EMANAHKFICSLQQGYDTMVGERGL-QLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+ L + R L +LS GQ V + A+ P+I+ LDE +DA
Sbjct: 113 KALK-------LGEEI----LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1216 ESERVVQDALDRVMKNRTTVVVAHRLST-IKNADMIAVV-KNGVIVEKGKHENLINIP 1271
V+ + + ++V H L + A + L+
Sbjct: 162 ARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 5e-40
Identities = 45/268 (16%), Positives = 104/268 (38%), Gaps = 30/268 (11%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L++V + + E ++ ++ G ++G +GSGK+T++ I P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG--SIKDNIAYGKD--DATTEEIRVATEL 498
+ I+G+ +++ IR I + P + ++ D + ++ + +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 499 AN-AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ + + +LS GQ + + A+ P I+ LDE +DA
Sbjct: 115 LKLGEEILRRKL-----------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEK-GTHSKLVEDP--EG 613
V+ + + ++V H L + + A G ++ + S+L+E EG
Sbjct: 164 RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEG 221
Query: 614 AYSQLIRLQEANKESEQTIDGQRKSEIS 641
+ + + + + + G +
Sbjct: 222 ERNDALLVLDIMDKKVSIVKGDLGMKFG 249
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-41
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 26/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ ++ ++Y G +++I G A++G +G GKST+ P +G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYG------KDDATTEEIR 493
L D I+ + +R+ IG+V Q+P LF+ S+ ++++G +D + +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + DK LS GQK+R+AIA ++ +P++L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610
D + + L + + T +I H + V D + V+ G+++ +G ++ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 611 PE 612
E
Sbjct: 235 KE 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 4e-40
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y + +N+ I+ G+ A++G +G GKST+ P +G I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEPV--LFNDTIRANIAYG---KGGDATEAEIQAA 1155
D I + + LR+ +G+V Q+P LF+ ++ ++++G E +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEA 1209
+ + G L LS GQK+RVAIA +V +PK+L+LDE
Sbjct: 126 NALK---------------RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170
Query: 1210 TSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTI-KNADMIAVVKNGVIVEKGK 1263
T+ LD + L + K T ++ H + + D + V+K G ++ +G
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 8e-41
Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 40/242 (16%)
Query: 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFN----DTIRANIAYG-KGGDATEAEIQ 1153
+ +DG E+ L +L R+Q+G++ Q FN T+ N+A + + + E++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRTVFGNVALPLELDNTPKDEVK 141
Query: 1154 A-ASEMANAHKFICSLQQGYDTMVG--ERGL----QLSGGQKQRVAIARAIVKDPKILLL 1206
+E+ + +VG ++ LSGGQKQRVAIARA+ +PK+LL
Sbjct: 142 RRVTELLS--------------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187
Query: 1207 DEATSALDAESERVVQDALDRVMKNR----TTVVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261
D+ATSALD + R + + L + NR T +++ H + +K D +AV+ NG ++E+
Sbjct: 188 DQATSALDPATTRSILELLKDI--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245
Query: 1262 GK 1263
Sbjct: 246 DT 247
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-38
Identities = 75/250 (30%), Positives = 124/250 (49%), Gaps = 39/250 (15%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L ++ + Q + S+ + +G ++G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIR 493
VL+DG L E +L R++IG++ Q L + ++ N+A + R
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-R 143
Query: 494 VATELANAAKFIDKLPQGIDTLVG------EHGTQLSGGQKQRIAIARAILKDPRILLLD 547
V L+ LVG + + LSGGQKQR+AIARA+ +P++LL D
Sbjct: 144 VTELLS---------------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD 188
Query: 548 EATSALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ATSALD + + + E L I NR T +++ H + V+ D +AVI G+++E+
Sbjct: 189 QATSALDPATTRSILELLKDI--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246
Query: 603 THSKLVEDPE 612
T S++ P+
Sbjct: 247 TVSEVFSHPK 256
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 1e-40
Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 28/243 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L + + + + ++ +I G L G +G+GK+T++++L + +G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1103 TLDGVEIQKL--QLKWLRQQMGLVSQE---PVLFNDTIRANI---AYGKGG---DATEAE 1151
L G K+ + +RQ +G VS + + + A+ G D +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 1152 IQAASEMANAHKFICSLQQ-GYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
A ++ L+ G + LS G+KQRV IARA++ P++L+LDE
Sbjct: 139 RNEAHQL---------LKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 1211 SALDAESERVVQDALDRVMKNRTT---VVVAHRLSTIKNA-DMIAVVKNGVIVEKGKHEN 1266
+ LD + + LD + + T + V H + I I ++K+G +++G E+
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249
Query: 1267 LIN 1269
++
Sbjct: 250 ILT 252
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 6e-38
Identities = 53/260 (20%), Positives = 109/260 (41%), Gaps = 29/260 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + + I S I+ G L G +G+GK+T+++++ + +G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQE---PVLFTGSIKDNIAYGKDDA-------TTEE 491
+ G + + +R+ IG VS + D + G + E
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A +L + + G+ ++ LS G+KQR+ IARA++ P++L+LDE +
Sbjct: 139 RNEAHQL------LKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 552 ALDAESEKVVQEALDRIMVNRTT---VIVAHRLSTVRNA-DMIAVIHRGKIVEKGTHSKL 607
LD + + + LD + + T + V H + + I ++ G+ +++G +
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
Query: 608 VEDP--EGAYSQLIRLQEAN 625
+ + + + +Q N
Sbjct: 251 LTSENMSRFFQKNVAVQRWN 270
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 9e-40
Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 31/276 (11%)
Query: 383 DIELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
IE+ +V + P E + S+ I+ G + G +GSGKST++ ++ +P +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYG-KDDATTEEI--RVA 495
G+VL DG K IR+ IG+ Q P F + D +A+ K+ + V
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 496 TELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ + F D++P LSGG+K+R+AIA I+ +P IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 552 ALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
LD E + + +++ + +T ++++H + TV + D + V+ +GK V GT + +E
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Query: 610 DPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESL 645
+ + L + G+ +S + L
Sbjct: 228 KYDPRFFTSKMLVMR----RLVLKGEDPFSMSDDEL 259
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-37
Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 32/236 (13%)
Query: 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
IE+ +VS + + + +++L I G+ + + G +GSGKST++ ++ +P +G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTIRANIAYG---KGGDATEAE-IQA 1154
+ DG ++ + +R+ +G+ Q P F + + +A+ D ++
Sbjct: 63 DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 1155 ASEMANAHKFICSLQQGYDTMVGERGLQ-----LSGGQKQRVAIARAIVKDPKILLLDEA 1209
A E + + LSGG+K+RVAIA IV +P IL+LDE
Sbjct: 120 AMEFVG--------------LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 1210 TSALDAESERVVQDALDRV-MKNRTTVVVAHRLSTI-KNADMIAVVKNGVIVEKGK 1263
LD E + + +++ +T ++++H + T+ + D + V++ G V G
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 5e-37
Identities = 82/248 (33%), Positives = 124/248 (50%), Gaps = 41/248 (16%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I++H + + ++V + +N+ IR G+ V ++G SGSGKST + L D D G I
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQAA 1155
+DG+ + + L +R+++G+V Q LF + T+ NI + +AE +A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 141
Query: 1156 SEMA------NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
+ AH + LSGGQ QRVAIARA+ +PKI+L DE
Sbjct: 142 ELLDKVGLKDKAHAY---------------PDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 1210 TSALDAESERVVQDALDRVMKN-----RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
TSALD E +V + L VMK T VVV H + + D + + G I+E+GK
Sbjct: 187 TSALDPE---MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
Query: 1264 HENLINIP 1271
E+L + P
Sbjct: 243 PEDLFDRP 250
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 9e-33
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ + S+ + ++ G ++ I G ++G SGSGKST + + D GE+
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG--------KDDATTEEI 492
+IDGINL K+ L +R+++G+V Q LF ++ +NI ++ A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE---- 137
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A A + +DK+ G+ + LSGGQ QR+AIARA+ +P+I+L DE TSA
Sbjct: 138 ------AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
Query: 553 LDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606
LD E +V E L +M T V+V H + R D + + G I+E+G
Sbjct: 190 LDPE---MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPED 245
Query: 607 LVEDPE 612
L + P+
Sbjct: 246 LFDRPQ 251
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-36
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 39/235 (16%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + H+S + + V D++L + G+ + ++G SG GK+T++ L F PD+G I
Sbjct: 5 LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1103 TLDGVEIQKLQLKWL---RQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA-AS 1156
+L G I + L +++G + QE VLF + T+ NIAYG G A+ +
Sbjct: 62 SLSGKTIFS-KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 1157 EMANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEAT 1210
M L+ + G L +LSGGQ+QR A+ARA+ DP+++LLDE
Sbjct: 121 AM---------LE-----LTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPF 166
Query: 1211 SALDAESERVVQDALDRVMKNR--TTVVVAH----RLSTIKNADMIAVVKNGVIV 1259
SALD + R +++ + ++ + V V+H L AD IAV+K G I+
Sbjct: 167 SALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRIL 218
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 5e-32
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 36/237 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + + S+ P + + S+S+ G ++G SG GK+T++ + F P +GE+
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYG--KDDATTEEI--RV 494
+ G I K L +++G + QE VLF T + NIAYG T + R+
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT--VYRNIAYGLGNGKGRTAQERQRI 119
Query: 495 AT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
EL ++ + P +LSGGQ+QR A+ARA+ DP ++LLDE SA
Sbjct: 120 EAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSA 168
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGT 603
LD + + ++E + + ++ V V+H L AD IAV+ +G+I++ +
Sbjct: 169 LDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTAS 222
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-36
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 42/242 (17%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ------ 1110
+V + ++L+ RAG ++++G SGSGKST + + P G I ++G I
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 1111 -------KLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQAASEM 1158
K QL+ LR ++ +V Q L+ + T+ N+ G +A +A +
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 1159 AN---AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
A + Q Y LSGGQ+QRV+IARA+ +P +LL DE TSALD
Sbjct: 138 AKVGIDER----AQGKYPV-------HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 186
Query: 1216 ESERVVQDALDRVMKN-----RTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
E +V + L +M+ +T VVV H + ++ + + + G I E+G E +
Sbjct: 187 E---LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242
Query: 1270 IP 1271
P
Sbjct: 243 NP 244
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 54/261 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + D++ Y ++ G S+ +G +++G SGSGKST + I P G +
Sbjct: 7 LHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 444 LIDGINL-------------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
+++G N+ + QL+ +R ++ +V Q L++ ++ +N+
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 484 --KDDATTEEIRVATELAN----AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
K DA A + + K P LSGGQ+QR++IARA+
Sbjct: 124 LSKHDA----RERALKYLAKVGIDERAQGKYP-----------VHLSGGQQQRVSIARAL 168
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIA 591
+P +LL DE TSALD E +V E L IM +T V+V H + R+ + +
Sbjct: 169 AMEPDVLLFDEPTSALDPE---LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224
Query: 592 VIHRGKIVEKGTHSKLVEDPE 612
+H+GKI E+G ++ +P+
Sbjct: 225 FLHQGKIEEEGDPEQVFGNPQ 245
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 8e-36
Identities = 56/266 (21%), Positives = 96/266 (36%), Gaps = 33/266 (12%)
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
E+ ++ L++ + S K V + + + ++GE
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTIRA 1137
+G+GK+T++ LL PD G I KL + Q++ V LF IR
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440
Query: 1138 NIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197
Q +++ + D V LSGG+ QRVAI A+
Sbjct: 441 QFLNP----------QFQTDVVKP----LRIDDIIDQEVQH----LSGGELQRVAIVLAL 482
Query: 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVK 1254
I L+DE ++ LD+E + + R + +T +V H AD + V +
Sbjct: 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542
Query: 1255 NG--VIVEKGKHENLINIPDGFYASL 1278
E+L+ + F +L
Sbjct: 543 GIPSKNAHARAPESLLTGCNRFLKNL 568
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-33
Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 28/216 (12%)
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449
Y S + + + S ++G++G+GK+T+I L+ P G+ +
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-- 413
Query: 450 LKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
+ +KI V LF I+ + ++ + + ID+
Sbjct: 414 ----NVSMKPQKIAPKFPGTVRQLFFKKIRGQF---LNPQFQTDVVKPLRIDD---IIDQ 463
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
Q LSGG+ QR+AI A+ I L+DE ++ LD+E + + + R
Sbjct: 464 EVQ-----------HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 568 IM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600
+ +T IV H AD + V
Sbjct: 513 FILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-32
Identities = 46/241 (19%), Positives = 83/241 (34%), Gaps = 38/241 (15%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
HV+ +Y + R G+ + LVG +G GKST + +L P+ G
Sbjct: 77 TNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 1102 IT-----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEA 1150
G E+Q K L + + + + N A +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNI-----------PRAIKG 182
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVGERGL---------QLSGGQKQRVAIARAIVKDP 1201
+Q E+ + + L +LSGG+ QR AI + V++
Sbjct: 183 PVQKVGELLKLRME--KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEA 240
Query: 1202 KILLLDEATSALDAESERVVQDALDRVMKNRTTVVVA-HRLSTIKN-ADMIAVVKNGVIV 1259
+ + DE +S LD + + ++ V+ H LS + +D + ++ V
Sbjct: 241 DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300
Query: 1260 E 1260
Sbjct: 301 Y 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-27
Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 25/234 (10%)
Query: 383 DIELRDVYFSYPARPNEQIFSGF-SISISSGTTAALVGQSGSGKSTVISLI--------E 433
V Y A F + G LVG +G GKST + ++
Sbjct: 77 TNLEAHVTHRYSANS----FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132
Query: 434 RFYDPQAGEVLIDGINLKEFQ---LQWIRKKIGLVSQEPV--LFTGSIKDNIAYGKDDAT 488
RF DP + +I E Q + + I + + +IK + +
Sbjct: 133 RFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK 192
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
+ ++ K + ++ ++ +LSGG+ QR AI + +++ + + DE
Sbjct: 193 LRMEKSPEDVKRYIKILQ-----LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 549 ATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVE 600
+S LD + + + ++ VI H LS + +D + +I+ V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 8e-35
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 36/235 (15%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE V YP + R ++ +IR G+ V L+G SGSGK+T++ L+ P G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA-ASEMA 1159
+ G + L + ++ +GLV Q LF + T+ N+++G + + E+ A E+
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL- 129
Query: 1160 NAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
L+ + +LSGGQ+QRVA+ARA+ P++LL DE +A+
Sbjct: 130 --------LR-----FMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 1214 DAESERVVQDALDRVMKNR--TTVVVAH----RLSTIKNADMIAVVKNGVIVEKG 1262
D + R ++ + +V T+V V H L AD + V+ G + + G
Sbjct: 177 DTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFG 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-30
Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE V YP + G S I G L+G SGSGK+T++ LI P G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV--AT 496
I G + + Q ++ +GLV Q LF ++ DN+++G + + RV
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ ++ P +LSGGQ+QR+A+ARA+ P++LL DE +A+D +
Sbjct: 131 RFMRLESYANRFP-----------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 557 SEKVVQEALDRI--MVNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ ++ + ++ + T+V V H L AD + V+H G + + GT ++ E
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEVYEK 236
Query: 611 P 611
P
Sbjct: 237 P 237
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 33/230 (14%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122
+++ ++ L+G +G+GKS + L+ PD G + L+G +I L + R+ +G
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 1123 LVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERG 1180
V Q+ LF + ++ NIAYG + + E + + EMA +G
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERD-RRVREMAE--------------KLGIAH 118
Query: 1181 L------QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NR 1232
L +LSGG++QRVA+ARA+V P++LLLDE SA+D +++ V+ + L V + +
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178
Query: 1233 TTVVVAHRLS---TIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 1279
+ V H L + AD +AV+ NG IVEKGK + L + +G A +
Sbjct: 179 PILHVTHDLIEAAML--ADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 27/199 (13%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG- 474
L+G +G+GKS + LI P GEV ++G ++ + R+ IG V Q+ LF
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHL 85
Query: 475 SIKDNIAYGKDDATTEEI--RV--ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
S+ NIAYG + E RV E A +D+ P +LSGG++QR
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGERQR 134
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAH----RLSTV 584
+A+ARA++ PR+LLLDE SA+D +++ V+ E L + + + V H
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML- 193
Query: 585 RNADMIAVIHRGKIVEKGT 603
AD +AV+ G+IVEKG
Sbjct: 194 --ADEVAVMLNGRIVEKGK 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 3e-32
Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 30/227 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +S Y D V + + I G V G +G GK+T++ + + P G I
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
+GV I K+ + ++ + +E ++ ++ + G + EI A E
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
+ +GE LS G +RV +A ++ + +I +LD+ A+D +S+
Sbjct: 122 -------VEVL-DLKKKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169
Query: 1219 RVVQDALDRVMKNRTTVVVAHRLST--IKNADMIAVVKNGVIVEKGK 1263
V ++ ++K + V++ S + D+ + K
Sbjct: 170 HKVLKSILEILKEKGIVII---SSREELSYCDVNENLHKYSTKIDKK 213
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 5e-31
Identities = 45/229 (19%), Positives = 101/229 (44%), Gaps = 37/229 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+RD+ Y ++ + +++I G G +G GK+T++ I + P GE+
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIA-----YG--KDDATTEEIRVA 495
+ +G+ + + ++ KI + +E ++ S++D + YG + + +
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ + K + +L S G +R+ +A +L + I +LD+ A+D
Sbjct: 122 VEVLDLKKKLGEL---------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 556 ESEKVVQEALDRIMVNRTTVIVA--HRLSTVRNADMIAVIHRGKIVEKG 602
+S+ V +++ I+ + VI++ LS D+ +H+
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 9e-32
Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 34/238 (14%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
++L +V+ Y + +++NL I+ G+ V+++G SGSGKST ++ L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1099 AGHITLDGVEIQKL---QLKWLR-QQMGLVSQEPVLFN----DTIRANIA----YGKGGD 1146
G + +D ++ L +L +R ++G V Q+ FN T N+ + G
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---FNLIPLLTALENVELPLIFKYRGA 115
Query: 1147 ATEAEIQAASEMANAHKFICSLQQ-G-YDTMVGERGLQLSGGQKQRVAIARAIVKDPKIL 1204
+ E + + L+ + + QLSGGQ+QRVAIARA+ +P I+
Sbjct: 116 MSGEERRKRALEC--------LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 1205 LLDEATSALDAESERVVQDALDRV--MKNRTTVVVAHRLSTIKNADMIAVVKNGVIVE 1260
L D+ T ALD+++ + L ++ +T VVV H ++ + + I +K+G +
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 31/236 (13%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQ 439
++L++V +Y +++I G +++G SGSGKST +I +++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 440 AGEVLIDGIN---LKEFQLQWIR-KKIGLVSQE----PVLFTGSIKDNIA----YGKDDA 487
GEV ID I L + +L IR KIG V Q+ P+L + +N+ + A
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGA 115
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLL 546
+ E R + A + ++ H QLSGGQ+QR+AIARA+ +P I+L
Sbjct: 116 MSGEER--RKRALEC--LKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 547 DEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
D+ T ALD+++ + + + L ++ +T V+V H ++ R + I + G++
Sbjct: 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-31
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 43/233 (18%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +S K+ +L+LK+ +G+ ++G +G+GK+ + L+ F+ PD+G I
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQAASEM 1158
LDG ++ L + + + V Q LF + ++ N+ +G K + +
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR----VLDT 111
Query: 1159 ANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
A + L LSGG++QRVA+ARA+V +PKILLLDE SA
Sbjct: 112 AR--------------DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157
Query: 1213 LDAESERVVQDALDRVMK--NRTTVVVAH----RLSTIKNADMIAVVKNGVIV 1259
LD ++ ++ L + K T + + H AD IAVV +G ++
Sbjct: 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLI 207
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 8e-28
Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 34/241 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ + + S+ + SG ++G +G+GK+ + LI F+ P +G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYG---KDDATTEEIRVATE 497
L+DG ++ L + I V Q LF +K N+ +G K + +
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMN--VKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+D+ P LSGG++QR+A+ARA++ +P+ILLLDE SALD +
Sbjct: 114 DLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162
Query: 558 EKVVQEALDRI--MVNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
++ +E L + T + + H AD IAV+ GK+++ G ++ E P
Sbjct: 163 QENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFEKP 219
Query: 612 E 612
Sbjct: 220 V 220
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-31
Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 23/228 (10%)
Query: 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
D+ D++ + + + + + G ++G +G GK+T ++
Sbjct: 261 DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA 320
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
G V + + K + G+++ + DA + E+
Sbjct: 321 DEGSVTPEKQI--------LSYKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEV 369
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ L+ + LSGG+ Q++ IA + K+ + +LD+ +S LD E
Sbjct: 370 TK--------RLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 559 KVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
+V +A+ R+ R T I+ H LS AD I V +G+ + G
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-30
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 25/245 (10%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + + L+ K + D Q+ D N + + G+ + ++G +G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVD-NGEAKEGEIIGILGPNG 304
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
GK+T +L D G +T + + + G V Q + + +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ---YLENASKDAL-- 359
Query: 1142 GKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDP 1201
+ + ++ N H+ + ++ V + LSGG+ Q++ IA + K+
Sbjct: 360 ----STSSWFFEEVTKRLNLHRLL-------ESNVND----LSGGELQKLYIAATLAKEA 404
Query: 1202 KILLLDEATSALDAESERVVQDALDRVMKNR--TTVVVAHRLSTIKN-ADMIAVVKNGVI 1258
+ +LD+ +S LD E +V A+ RV + R T ++ H LS AD I V K G
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK-GEP 463
Query: 1259 VEKGK 1263
+ G
Sbjct: 464 EKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-30
Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 26/227 (11%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKI-RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
V +Y V F+ L + + ++G++G GK+TV+ +L P+ G
Sbjct: 4 EVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK 59
Query: 1106 GVEIQKLQLKWLR-QQMGLVSQEPVLFNDTIRANIAY----GKGGDATEAEIQAASEMAN 1160
+ + LK R +++ +E I I Y K T EI +
Sbjct: 60 VGKDE--VLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERG 117
Query: 1161 AHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+ L + L LSGG QR+ +A +++++ + + D+ +S LD
Sbjct: 118 KKDEVKEL-------LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 1215 AESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVE 1260
+ A+ ++KN+ +VV H L + D+I ++ V
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-28
Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 20/240 (8%)
Query: 387 RDVYFSYPARPNEQIFSGFSISI-SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
+V Y F F + + T ++G++G GK+TV+ ++ P G+
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56
Query: 446 DGINLKEFQLQWIR-KKIGLVSQEPVLFTGSIKDNIAYGKDDATTE----EIRVATELAN 500
+ K+ L+ R K+I +E ++ +K + ++ + +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 501 AAKFIDKLPQ--GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
D++ + + L + LSGG QR+ +A ++L++ + + D+ +S LD
Sbjct: 115 ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG--THSKLVEDPEGAY 615
+ +A+ ++ N+ ++V H L + D+I +I G+ G + S +
Sbjct: 175 MNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSKSYAARVGINNF 233
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 5e-31
Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 29/230 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L V+ L+ ++RAG+ + LVG +G+GKST+++ + G I
Sbjct: 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
G ++ L +SQ+ F + + + + +
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116
Query: 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV-------KDPKILLLDEATSALD 1214
L + + LSGG+ QRV +A ++ ++LLLDE ++LD
Sbjct: 117 DDK---LGRSTNQ--------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165
Query: 1215 -AESERVVQDALDRVMKNRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKG 1262
A+ + + + V+ +H L+ T+++A ++K G ++ G
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 36/234 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+DV S + +G LVG +G+GKST+++ + G +
Sbjct: 5 MQLQDV-------AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGKDDATTEEIRVATELANAA 502
G L+ + + +SQ+ F + + + D T E+ +
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGAL- 114
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRILLLDEATSALDA 555
+D +G QLSGG+ QR+ +A +L ++LLLDE ++LD
Sbjct: 115 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
Query: 556 ESEKVVQEALDRIMVN-----RTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
Q ALD+I+ V+ +H L+ T+R+A ++ GK++ G
Sbjct: 167 AQ----QSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 6e-31
Identities = 51/233 (21%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + + + ++ + ++ +I G+ L+G +G+GK+T + ++ P +G +
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIA-----YGKGGDATEAEIQAAS 1156
T+ G + + + +R+ + + +E + + + Y E ++ A+
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
E+ L + V S G +++ IARA++ +P++ +LDE TS LD
Sbjct: 132 EI-------AGLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 1217 SERVVQDALDRVMKNRTTVVV-AHRLSTI-KNADMIAVVKNGVIVEKGKHENL 1267
+ R V+ L + + T++V +H + + D IA++ NG IVE G E L
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
G S I G L+G +G+GK+T + +I P +G V + G N+ E + +RK I
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91
Query: 464 LVSQEPVLFTG-SIKDNIA-----YGKDDATTEE-IRVATELANAAKFIDKLPQGIDTLV 516
+ +E + + + Y + EE + ATE+A + I
Sbjct: 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST----- 146
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
S G +++ IARA++ +PR+ +LDE TS LD + + V++ L + T++
Sbjct: 147 ------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 577 V-AHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
V +H + V D IA+IH G IVE GT +L E
Sbjct: 201 VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 9e-31
Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 41/237 (17%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++ ++ + ++L ++ G+ V+++G SGSGKST++ +L P G +
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1103 TLDGVEIQKL---QLKWLR-QQMGLVSQEPVLFN----DTIRANIA----YGKGGDATEA 1150
L+G E+ +L LR +++G V Q T N+ G EA
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQF---HYLIPELTALENVIVPMLKM-GKPKKEA 117
Query: 1151 EIQAASEMANAHKFICSLQQGYDTMVG--ERGL----QLSGGQKQRVAIARAIVKDPKIL 1204
+ + + + +G ++ +LSGG++QRVAIARA+ +P +L
Sbjct: 118 KERGEYLL---------------SELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL 162
Query: 1205 LLDEATSALDAESERVVQDALDRV-MKNRTTVVVAHRLSTIKNADMIAVVKNGVIVE 1260
DE T LD+ + + V D ++ + V+V H + +K+G +V
Sbjct: 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-28
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ ++ +I G S+S+ G +++G SGSGKST++ ++ P G+V
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 444 LIDGIN---LKEFQLQWIR-KKIGLVSQE----PVLFTGSIKDNIA----YGKDDATTEE 491
++G E +L +R +K+G V Q P L + +N+ +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLKMGKPKKEAK 118
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
R + +L G+ + +LSGG++QR+AIARA+ +P +L DE T
Sbjct: 119 ER-------GEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 552 ALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
LD+ + K V + +I + V+V H + GK+V
Sbjct: 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-30
Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 33/246 (13%)
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R EI T ++ + + + Y + I G +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNI 480
GK+T + ++ +P G++ D ++ Q I + V L + +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----YIKADYEGTVYELLSKIDASKL 376
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
+ E+ + + D+ +LSGG+ QR+AIA +L+D
Sbjct: 377 ---NSNFYKTELLKPLGIID---LYDREVN-----------ELSGGELQRVAIAATLLRD 419
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597
I LLDE ++ LD E V A+ +M +T ++V H + + +D + V G+
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGE 478
Query: 598 IVEKGT 603
+ G
Sbjct: 479 PGKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-30
Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 22/223 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVIS-----LIERFYD-PQAGEVLIDGINLKEFQLQWIR 459
+ G +VG +G+GKST + LI + + +I E Q + +
Sbjct: 41 LPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK 100
Query: 460 ---KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
+I V + + D I E ++ A E + + L ++ ++
Sbjct: 101 LKNGEIRPVVKPQ--YV----DLIPKAVKGKVIELLKKADETGKLEEVVKAL--ELENVL 152
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG+ QR+AIA A+L++ DE +S LD A+ R+ +V+
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 577 VA-HRLSTVRN-ADMIAVIHRGKIVEKG--THSKLVEDPEGAY 615
V H L+ + +D+I V++ G+ G + K + +
Sbjct: 213 VVEHDLAVLDYLSDIIHVVY-GEPGVYGIFSQPKGTRNGINEF 254
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-30
Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 30/245 (12%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + + + + + + Y S +I+ G+ + +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
GK+T V +L +P G I D K Q + V + L + + +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEG-TVYE---LLSKIDASKL-- 376
Query: 1142 GKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDP 1201
++ + + + + YD V E LSGG+ QRVAIA +++D
Sbjct: 377 ----NSNFYKTELLKPL--------GIIDLYDREVNE----LSGGELQRVAIAATLLRDA 420
Query: 1202 KILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258
I LLDE ++ LD E V A+ +M+ +T +VV H + I +D + V + G
Sbjct: 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GEP 479
Query: 1259 VEKGK 1263
+ G+
Sbjct: 480 GKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-27
Identities = 59/259 (22%), Positives = 95/259 (36%), Gaps = 49/259 (18%)
Query: 1047 HVSFKYPSRPDVQVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH---- 1101
+Y F L ++ G V +VG +G+GKST V +L P+
Sbjct: 26 DCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 1102 -----ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
G E+Q K ++ V + + D I GK + ++ A
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLI-PKAVKGKVIEL----LKKAD 134
Query: 1157 EMANAHKFICSLQQGYDTMVGERGL---------QLSGGQKQRVAIARAIVKDPKILLLD 1207
E + +V L LSGG+ QRVAIA A++++ D
Sbjct: 135 ETGKL-----------EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183
Query: 1208 EATSALDAESERVVQDALDRVMKNRTTVVVA-HRLSTIKN-ADMIAVVKN-----GVIVE 1260
E +S LD A+ R+ + +V+V H L+ + +D+I VV G+ +
Sbjct: 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQ 243
Query: 1261 KGKHENLINI-PDGFYASL 1278
N IN G+
Sbjct: 244 PKGTRNGINEFLRGYLKDE 262
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-30
Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 34/244 (13%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG------ 1100
+Y ++ G V +VG +G+GK+T V +L P+
Sbjct: 96 DCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVS---QEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
+ +LQ + R + G + + + D + GK E+ +
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YVDLL-PKAVKGK-----VRELLKKVD 204
Query: 1158 MANAHKFICS---LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALD 1214
+ + L+ D + QLSGG+ QRVAIA A+++ DE +S LD
Sbjct: 205 EVGKFEEVVKELELENVLDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 1215 AESERVVQDALDRVMKNRTTVVVA-HRLSTIKN-ADMIAVVKN-----GVIVEKGKHENL 1267
V + R+ V+V H L+ + +D+I VV G+ + N
Sbjct: 261 IRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNG 320
Query: 1268 INIP 1271
IN
Sbjct: 321 INEF 324
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-30
Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 30/245 (12%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + S + + + +E + Y S +IR G+ + +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
GK+T V +L +P G + D K Q + V + L + + +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG-TVYE---LLSKIDSSKL-- 446
Query: 1142 GKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDP 1201
++ + + + + YD V + LSGG+ QRVAIA +++D
Sbjct: 447 ----NSNFYKTELLKPL--------GIIDLYDRNVED----LSGGELQRVAIAATLLRDA 490
Query: 1202 KILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258
I LLDE ++ LD E V A+ +M+ +T +VV H + I +D + V + G
Sbjct: 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEP 549
Query: 1259 VEKGK 1263
G+
Sbjct: 550 GRHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 29/244 (11%)
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R EI ++ + +E + Y + I G +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
GK+T + ++ +P G+V D ++ Q+I+ + E L + +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQYIKAEYEGTVYE--LLSKIDSSKL-- 446
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
+ E+ + + D+ + LSGG+ QR+AIA +L+D
Sbjct: 447 -NSNFYKTELLKPLGIID---LYDRNVE-----------DLSGGELQRVAIAATLLRDAD 491
Query: 543 ILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
I LLDE ++ LD E V A+ +M +T ++V H + + +D + V G+
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPG 550
Query: 600 EKGT 603
G
Sbjct: 551 RHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-29
Identities = 58/307 (18%), Positives = 105/307 (34%), Gaps = 29/307 (9%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS-----LIERFYD-PQA 440
D Y + G +VG +G+GK+T + LI + +
Sbjct: 95 EDCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVS---QEPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
+ +I E Q + R K G + + + D + E ++ E
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YV----DLLPKAVKGKVRELLKKVDE 205
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ + + +L ++ ++ QLSGG+ QR+AIA A+L+ DE +S LD
Sbjct: 206 VGKFEEVVKEL--ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 558 EKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
V + R+ V+V H L+ + +D+I V++ G+ G P+G
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY-GEPGVYGI----FSKPKGTR 318
Query: 616 SQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVS 675
+ + + + E R EI L S
Sbjct: 319 NGINEFLQGYLKDENV--RFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEP 376
Query: 676 FGLPSGQ 682
+ G+
Sbjct: 377 GEIRKGE 383
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 44/231 (19%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + ++ F Y A +F + ++ G A++GQ+G GKST++ L+ + P G++
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYG------------KDDATTE 490
+ + IG V Q F S+ D + G D
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD---- 105
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
++A A +D L + L T LSGGQ+Q I IARAI + +++LLDE T
Sbjct: 106 -----YQVAMQA--LDYL--NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156
Query: 551 SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
SALD ++ +V L + N T V H+ + V A+ ++++
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 56/230 (24%), Positives = 95/230 (41%), Gaps = 41/230 (17%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + ++ F Y + +F+ LN + G +A++G++G GKST++ LL + P G I
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYG---------KGGDATEAEI 1152
+ Q +G V Q F ++ + G K
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGL-QLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
A + N +R LSGGQ+Q + IARAI + K++LLDE TS
Sbjct: 110 MQALDYLNLTHL------------AKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 1212 ALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVI 1258
ALD ++ +V L + + N T V H+ + + A+ ++
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-27
Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 37/257 (14%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + +VS + V ++N+ I G+ ++G SG+GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1102 ITLDGVEIQKLQLKWL---RQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA-A 1155
+ D + + +++G+V Q L+ N T NIA+ ++ EI+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEA 1209
E+A ++ + +LSG Q+QRVA+ARA+VKDP +LLLDE
Sbjct: 122 EEVAK--------------ILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 1210 TSALDA---ESERVVQDALDRVMKNRTTVVVAHRLS---TIKNADMIAVVKNGVIVEKGK 1263
S LDA +S R + + + T +VV+H + I AD + V+ G +V+ GK
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGV-TLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGK 224
Query: 1264 HENLINIPDG-FYASLI 1279
E+L + P ASLI
Sbjct: 225 PEDLYDNPVSIQVASLI 241
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-25
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 45/252 (17%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I +++V + + +I+I +G ++G SG+GK+T + +I P GE
Sbjct: 3 RIIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 443 VLIDGINLKEFQLQWIRKK---IGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRV 494
+ D + + + IG+V Q L+ + +NIA+ K RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 495 --ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++ + ++ P+ +LSG Q+QR+A+ARA++KDP +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 553 LDAE------SE-KVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIV 599
LDA + K VQ L T ++V+H + AD + V+ +GK+V
Sbjct: 171 LDARMRDSARALVKEVQSRL-----GVTLLVVSHDPADIFAI-----ADRVGVLVKGKLV 220
Query: 600 EKGTHSKLVEDP 611
+ G L ++P
Sbjct: 221 QVGKPEDLYDNP 232
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-23
Identities = 83/254 (32%), Positives = 127/254 (50%), Gaps = 38/254 (14%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
EI+L ++ K+ + ++NLKI+ G+ +AL+G SGSGKST++ + Y P +G
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA----A 1155
I D ++ +L K + +GLV Q L+ + T+ NIA+ + A EI
Sbjct: 60 IYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
++M D ++ QLSGGQ+QRVAIARA+VK+P++LLLDE S LDA
Sbjct: 118 AKML-----------HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 1216 E---SERVVQDALDRVMKNRTTVVVAH------RLSTIKNADMIAVVKNGVIVEKGKHEN 1266
R L + + TTV V H + AD IAV++ G I++ G +
Sbjct: 167 LLRLEVRAELKRLQKELGI-TTVYVTHDQAEALAM-----ADRIAVIREGEILQVGTPDE 220
Query: 1267 LINIPDG-FYASLI 1279
+ P F +
Sbjct: 221 VYYKPKYKFVGGFL 234
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 4e-20
Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+I+L ++ + N + ++ I G AL+G SGSGKST++ I Y P +G+
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ D + +L + +GLV Q L+ ++ NIA+ K + +V
Sbjct: 60 IYFDEKDVT----ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR 115
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
AK + ID L+ + QLSGGQ+QR+AIARA++K+P +LLLDE S LDA
Sbjct: 116 ----EVAKML-----HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E +++ +E + TTV V H + AD IAVI G+I++
Sbjct: 167 LLRLEVRAELKRLQKE------LGITTVYVTHDQAEALAM-----ADRIAVIREGEILQV 215
Query: 602 GTHSKLVEDP 611
GT ++ P
Sbjct: 216 GTPDEVYYKP 225
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 2e-20
Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 38/254 (14%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + ++ KY V+ ++ +++ G+ VAL+G SG GK+T + +L Y P +G
Sbjct: 3 SIRVVNLK-KYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA----A 1155
I D V + + K +++G+V Q L+ + T+ NIA+ + ++ E++
Sbjct: 60 IYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+ D ++ + QLSGGQ+QRVA+ARA+VK PK+LL DE S LDA
Sbjct: 118 ARKL-----------LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
Query: 1216 E---SERVVQDALDRVMKNRTTVVVAH------RLSTIKNADMIAVVKNGVIVEKGKHEN 1266
R L + + T+V V H + A IAV G +V+ G +
Sbjct: 167 NLRMIMRAEIKHLQQELGI-TSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQYGTPDE 220
Query: 1267 LINIPDG-FYASLI 1279
+ + P F AS I
Sbjct: 221 VYDSPKNMFVASFI 234
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 7e-18
Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I + ++ + + G S + G AL+G SG GK+T + ++ Y P +GE
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ D +N + +++G+V Q L+ ++ +NIA+ + E RV
Sbjct: 60 IYFDDVLVN----DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A+ + ID L+ TQLSGGQ+QR+A+ARA++K P++LL DE S LDA
Sbjct: 116 ----EIARKL-----LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E + + QE + T+V V H + A IAV ++GK+V+
Sbjct: 167 NLRMIMRAEIKHLQQE------LGITSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQY 215
Query: 602 GTHSKLVEDP 611
GT ++ + P
Sbjct: 216 GTPDEVYDSP 225
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 3e-20
Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 42/256 (16%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E++L +++ ++ + LNL I+ G+ + L+G SG GK+T + ++ +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASEMA 1159
I ++ L K + + +V Q ++ + T+ NIA+ K + EI A
Sbjct: 68 IYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 125
Query: 1160 NAHKFICSLQQGYDTMVGERGL------QLSGGQKQRVAIARAIVKDPKILLLDEATSAL 1213
++ L QLSGGQ+QRVA+ARAIV +P +LL+DE S L
Sbjct: 126 AE-------------LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 172
Query: 1214 DAE---SERVVQDALDRVMKNRTTVVVAH------RLSTIKNADMIAVVKNGVIVEKGKH 1264
DA+ + R L + +K TT+ V H + D IAV+ G +++ G
Sbjct: 173 DAKLRVAMRAEIKKLQQKLKV-TTIYVTHDQVEAMTM-----GDRIAVMNRGQLLQIGSP 226
Query: 1265 ENLINIPDG-FYASLI 1279
+ P+ F A+ I
Sbjct: 227 TEVYLRPNSVFVATFI 242
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 7e-17
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+++L ++ + N + +++I G L+G SG GK+T + +I +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ + L + I +V Q ++ ++ +NIA+ K + RV
Sbjct: 68 IYFGDRDVT----YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 123
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
AA+ + I+ L+ + QLSGGQ+QR+A+ARAI+ +P +LL+DE S LDA
Sbjct: 124 ----WAAELL-----QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E +K+ Q+ + TT+ V H + D IAV++RG++++
Sbjct: 175 KLRVAMRAEIKKLQQK------LKVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLLQI 223
Query: 602 GTHSKLVEDP 611
G+ +++ P
Sbjct: 224 GSPTEVYLRP 233
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 5e-19
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 39/236 (16%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ L V + +V R+++L+++ G+ + L+G SG GK+T + ++ +P G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1102 ITLDGVEIQKLQLKWLRQ----QMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA- 1154
I + + + + +V Q L+ + T+ NIA+ K EI
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 1155 ---ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATS 1211
+E+ G ++ + +LSGGQ+QRVA+ RAIV+ P++ L+DE S
Sbjct: 120 VREVAELL-----------GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 1212 ALDAE---SERVVQDALDRVMKNRTTVVVAH------RLSTIKNADMIAVVKNGVI 1258
LDA+ R L R + TT+ V H + D IAV+ GV+
Sbjct: 169 NLDAKLRVRMRAELKKLQRQLGV-TTIYVTHDQVEAMTM-----GDRIAVMNRGVL 218
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 46/252 (18%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ L DV+ + S+ + G L+G SG GK+T + +I +P G+
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 443 VLIDG--INLKEFQLQWIRKK--IGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIR 493
+ I + E + K I +V Q L+ ++ DNIA+ K + R
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
V A+ + G+ L+ +LSGGQ+QR+A+ RAI++ P++ L+DE S L
Sbjct: 120 VR----EVAELL-----GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 554 DA--------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIV 599
DA E +K+ ++ + TT+ V H + D IAV++RG +
Sbjct: 171 DAKLRVRMRAELKKLQRQ------LGVTTIYVTHDQVEAMTM-----GDRIAVMNRGVLQ 219
Query: 600 EKGTHSKLVEDP 611
+ G+ ++ + P
Sbjct: 220 QVGSPDEVYDKP 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 82.1 bits (204), Expect = 2e-17
Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116
+ + ++LK+ G+ V L+G +G+GK+T +S + G I +G +I
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 1117 L-RQQMGLVSQEPVLFND-TIRANI---AYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
+ R + LV + +F + T+ N+ AY + L+
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR---------------DLEWI 122
Query: 1172 YDTM--VGERGLQ----LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ--- 1222
+ + ER Q LSGG++Q +AI RA++ PK+L++DE + L + +V
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVF 179
Query: 1223 DALDRVMKNRTTVVV----AHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPD 1272
+ + ++ + TT+++ A +K A V++ G IV +GK L++
Sbjct: 180 EVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 60/243 (24%), Positives = 116/243 (47%), Gaps = 34/243 (13%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E++ ++ Y A G + + G L+G +G+GK+T +S I Q G+++
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 445 IDGINLKEFQLQWI-RKKIGLVSQEPVLFTG-SIKDNI---AYGKDDATTEEIRVATELA 499
+G ++ I R I LV + +F ++ +N+ AY + D + +L
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDLE 120
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+L + + L G LSGG++Q +AI RA++ P++L++DE + L +
Sbjct: 121 WIFSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---API 173
Query: 560 VVQEALDRI-MVNR--TTVIVAHRLSTVRNADM---IA----VIHRGKIVEKGTHSKLVE 609
+V E + I +N+ TT+++ +NA +A V+ G+IV +G S+L++
Sbjct: 174 LVSEVFEVIQKINQEGTTILLVE-----QNALGALKVAHYGYVLETGQIVLEGKASELLD 228
Query: 610 DPE 612
+
Sbjct: 229 NEM 231
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 7e-17
Identities = 60/301 (19%), Positives = 113/301 (37%), Gaps = 36/301 (11%)
Query: 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFS 403
++ F + A + E R + +D D+ + +Y A+ + +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
+ + + G +G GKST++ I A +DG +E +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAI-------ANG-QVDGFPTQE------ECRTV 498
Query: 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
V + T S + + + + + +L + + I + L
Sbjct: 499 YVEHDID-GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPI--------SAL 549
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR--- 580
SGG K ++A+ARA+L++ ILLLDE T+ LD + + L+ T++ ++H
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDSVF 607
Query: 581 LSTVRNADMIAVIHRGKIVE-KGTHSKLVED-PE-GAYSQLIRLQEANKESEQTIDGQRK 637
L V + I K+ + KG ++ V+ P AY +L K E K
Sbjct: 608 LDNV--CEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVK 665
Query: 638 S 638
+
Sbjct: 666 T 666
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 4e-16
Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 29/244 (11%)
Query: 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR 1055
+ + + + K A + R P + ED ++ S Y ++
Sbjct: 389 FTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK 448
Query: 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115
+ L+++ + + G +G GKST++ + + +DG Q+
Sbjct: 449 I---LLNKTQLRLKRARRYGICGPNGCGKSTLMRAI--------ANGQVDGFPTQE---- 493
Query: 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTM 1175
+ V + + + G T+ I+ + F +
Sbjct: 494 --ECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIK---DKLIEFGF---TDEMIAMP 545
Query: 1176 VGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTV 1235
+ LSGG K ++A+ARA++++ ILLLDE T+ LD + + + L+ T++
Sbjct: 546 ISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSI 599
Query: 1236 VVAH 1239
++H
Sbjct: 600 TISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 3e-10
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL +I+ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958
Query: 582 STVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+N + + + G++ G +
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG----------HNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRL 1241
LSGGQK ++ +A + P +++LDE T+ LD +S + AL +++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958
Query: 1242 STIKN-ADMIAVVKNGVIVEKG 1262
KN + + VK+G + G
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 4e-06
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
K +++ ++ F+YP D+N + +A++G +G+GKST++++L P +
Sbjct: 669 KAIVKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 1100 GHITL 1104
G +
Sbjct: 728 GEVYT 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 3e-05
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 372 TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431
TK K + +++ ++ F YP + + + S + A++G +G+GKST+I++
Sbjct: 666 TKQKAI------VKVTNMEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINV 718
Query: 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
+ P +GEV N +I + Q S D
Sbjct: 719 LTGELLPTSGEVYT-HENC----------RIAYIKQHAFAHIESHLD 754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
G SIS++ G ++G +GSGKST+I++I F G V + ++ + +
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY- 82
Query: 463 GLVS--QEPVLFTG-SIKDNIAYGKDDATT---------------EEIRVATELANAAKF 504
G+V Q P ++ +N+ G+ EE+ A K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKI 137
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
++ L + L +LSGGQ + + I RA++ +P+++++DE + + +
Sbjct: 138 LEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 565 LDRIMVNRTTV-IVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
+ + T I+ HRL V N D + V+ G+I+ +G
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 27/164 (16%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122
+++ + G ++G +GSGKST+++++ F D G + + +I + G
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE-PAELYHYG 83
Query: 1123 LVS--QEPVLFND-TIRANI--------------AYGKGGDATEAEIQA-ASEMANAHKF 1164
+V Q P + T+ N+ + K E E+ A ++ +F
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL---EF 140
Query: 1165 ICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDE 1208
+ L YD G +LSGGQ + V I RA++ +PK++++DE
Sbjct: 141 L-KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDE 179
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 51/195 (26%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQ 439
++L++V ++ + ++ I G VG SG GKST++ +I E
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56
Query: 440 AGEVLIDG--INLKEFQLQWIRKKIGLVSQE----PVLFTGSIKDNIAYG----KDDATT 489
+G++ I +N + +G+V Q P L S+ +N+++G
Sbjct: 57 SGDLFIGEKRMN----DTPPAERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKK-- 107
Query: 490 EEI--RVATELANAAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
E I RV A+ +D+ P+ LSGGQ+QR+AI R ++ +P
Sbjct: 108 EVINQRVN----QVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEP 152
Query: 542 RILLLDEATSALDAE 556
+ LLDE S LDA
Sbjct: 153 SVFLLDEPLSNLDAA 167
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-11
Identities = 36/94 (38%), Positives = 44/94 (46%), Gaps = 31/94 (32%)
Query: 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV-MK---------- 1230
LSGGQ+QRVAI R +V +P + LLDE S LDA AL RV M+
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--------AL-RVQMRIEISRLHKRL 183
Query: 1231 NRTTVVVAH------RLSTIKNADMIAVVKNGVI 1258
RT + V H L AD I V+ G +
Sbjct: 184 GRTMIYVTHDQVEAMTL-----ADKIVVLDAGRV 212
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
++L +V+ + +V V +D+NL I G+ V VG SG GKST
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKST 44
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 1e-13
Identities = 93/633 (14%), Positives = 194/633 (30%), Gaps = 187/633 (29%)
Query: 353 AAFKMFETINRKPE---------IDAYDTK---GKILDDIRGDIELRDVYFSYPARP--N 398
++F T+ K E + + K I + R + +Y R +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 399 EQIFSGFSIS--------------ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
Q+F+ +++S + + G GSGK+ V A +V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----------ALDVC 171
Query: 445 ID-GINLK-EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+ + K +F++ W+ + + + + + Y ++ + +
Sbjct: 172 LSYKVQCKMDFKIFWL--NLKNCNSPETVLE--MLQKLLY----------QIDPNWTSRS 217
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD---PRILL-LDEATSALDAESE 558
+ I ++ + + R +LK LL L + ++
Sbjct: 218 DHSSNIKLRIHSI------------QAEL---RRLLKSKPYENCLLVLL------NVQNA 256
Query: 559 KVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
K A + +I++ TT R + + TH L
Sbjct: 257 KAW-NAFNLSCKILL--TT----------RFKQVTDFL----SAATTTHISLDHHSMT-- 297
Query: 616 SQLIRLQEANKESEQ---TIDGQRKSEISMESLRHSSHRMSL-RRSISRGSSIGNSSRH- 670
L E + R ++ E L + R+S+ SI G + ++ +H
Sbjct: 298 -----LTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 671 -------SISVSFGLPSGQFADTALGEPAGPSQPTEEVA--PE---VPTRRLAYL--NKP 716
I S L EPA + + ++ P +PT L+ + +
Sbjct: 351 NCDKLTTIIESSL---------NVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 717 --EIPVILA-----GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI--Y 767
++ V++ + + I + + + K +E ++ Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----KLENEYALHRS---IVDHY 453
Query: 768 ---LALGAGSFLLSPAQSYFFAVAGNKL--IQRIRSMCFEKVIHMEVSWFDEP-EHSSGA 821
+ + YF++ G+ L I+ M +++ ++ + ++ H S A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 822 IGARLSADAASVRALVGDA---LARIVQNIST--AAAGLIIAFTASWQLALIILVMLPLI 876
A S+ + I N I+ F + LI
Sbjct: 514 WNAS-----GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC------- 561
Query: 877 GVSGYT---QMKFMKGFSADAKMKYEEA-SQVA 905
S YT ++ M A+ + +EEA QV
Sbjct: 562 --SKYTDLLRIALM----AEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 1e-09
Identities = 83/629 (13%), Positives = 189/629 (30%), Gaps = 209/629 (33%)
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSN----YKKFLVTAYK--SGVQEGL-----AAGIG 290
+ + + + ++ + N + K+ V+ + +++ L A +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 291 L-GMVMLIVFCSYALSVWYG-GKLILEEGYNGGQVVNVM--VAVLTGS------MSLGEA 340
+ G++ G GK + ++V V ++L
Sbjct: 155 IDGVL--------------GSGKTWV--------ALDVCLSYKVQCKMDFKIFWLNLKN- 191
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDA-YDTKGKILDDIRGDIE-------------- 385
C S +M + + + ID + ++ +I+ I
Sbjct: 192 --CNSP-----ETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 386 -------LRDVYFSYPARPNEQIFSGFSIS----ISSGTT--AALVGQSGSGKSTVISLI 432
L +V N + ++ F++S + TT + + +T ISL
Sbjct: 243 YENCLLVLLNVQ-------NAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLD 292
Query: 433 ER---FYDPQAGEVLIDGINLKEFQLQWIRKKIG--LVSQEPVLFTGSIKDNIAYGKDDA 487
+ +L+ ++ + L +S + SI+D +A
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLA------ 342
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD----PRI 543
T + + DKL I++ + L + +++ ++ P I
Sbjct: 343 TWDNWKHVN--------CDKLTTIIESSL----NVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 544 LLLDEATSAL-----DAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH---- 594
LL S + ++ VV + +V + + + I
Sbjct: 391 LL-----SLIWFDVIKSDVMVVVNKLHKYSLVEK------------QPKESTISIPSIYL 433
Query: 595 --RGKIVEKGT-HSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEIS--MESLRHSS 649
+ K+ + H +V+ Y + + +++ +D S I ++++ H
Sbjct: 434 ELKVKLENEYALHRSIVD----HY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-P 487
Query: 650 HRMSLRRSISRGSS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTR 708
RM+L R + + RH TA + +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHD-------------STAWNASGS-------ILNTLQQL 527
Query: 709 RL--AYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI 766
+ Y+ + P Y L++++++ K L S++ L+
Sbjct: 528 KFYKPYICDND------------------PKYERLVNAILDFLPKIEENLIC-SKYTDLL 568
Query: 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQR 795
+A L F A +K +QR
Sbjct: 569 RIA-------LMAEDEAIFEEA-HKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-09
Identities = 37/258 (14%), Positives = 72/258 (27%), Gaps = 63/258 (24%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYP-SRPD-VQVFRDLNLKIRAGKTVALVGE 1079
+ + PS + +E + V KY SR R L++R K V + G
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
GSGK+ V + Y +D ++ WL + + +
Sbjct: 159 LGSGKTWVALDVCLSYKV---QCKMDF------KIFWLN--LKNCNSPETVL-------- 199
Query: 1140 AYGKGGDATEAEIQAASEMANA--HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197
EM ++ + D + S + R +
Sbjct: 200 -----------------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK- 241
Query: 1198 VKDPKILL-LDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNG 1256
LL L + ++ + +A + + + L T + V +
Sbjct: 242 -PYENCLLVLL------NVQNAKAW-NAFN--LSCKI-------LLTTRFKQ----VTDF 280
Query: 1257 VIVEKGKHENLINIPDGF 1274
+ H +L +
Sbjct: 281 LSAATTTHISLDHHSMTL 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 8e-07
Identities = 110/763 (14%), Positives = 234/763 (30%), Gaps = 224/763 (29%)
Query: 512 IDTLVGEHGTQLSGGQKQRIAIAR-AILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+D GEH Q K +++ A + + D D + +E +D I++
Sbjct: 7 MDFETGEH--QYQ--YKDILSVFEDAFVDN-----FD-CKDVQDMPKSILSKEEIDHIIM 56
Query: 571 NRTTVIVAHRLSTVRNADMIAVIHRGK-IVEKGTHSKLVEDPEGAYSQLI-RLQEANKES 628
++ V RL ++ + + +V+K L + Y L+ ++ ++
Sbjct: 57 SKDAVSGTLRL-------FWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQP 105
Query: 629 EQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTAL 688
SM + + R L + N SR
Sbjct: 106 ------------SMMTRMYIEQRDRLYNDNQVFAK-YNVSRL------------------ 134
Query: 689 GEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYG--LLISSVI 746
QP ++ R+ +P V++ G + G G + V
Sbjct: 135 -------QPYLKL------RQALLELRPAKNVLIDG----VL-GS-----GKTWVALDVC 171
Query: 747 ETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIH 806
++ FW L L + SP +++ ++ + +
Sbjct: 172 LSY--KVQCKMDFKIFW----LNLKNCN---SP----------ETVLEMLQKLLY----Q 208
Query: 807 MEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866
++ +W +HSS +L + L R++++ ++
Sbjct: 209 IDPNWTSRSDHSSNI---KLRIHSIQ------AELRRLLKS-------------KPYENC 246
Query: 867 LIIL--VMLPLIGVSGYTQMKFMKGFSADAKM----KYEEASQVANDAVGSIRTVAS--- 917
L++L V K F+ K+ ++ QV + + T S
Sbjct: 247 LLVLLNVQNA----------KAWNAFNLSCKILLTTRF---KQVTDFLSAATTTHISLDH 293
Query: 918 ----FCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE 973
++V L K + + + + +++ S A +
Sbjct: 294 HSMTL-TPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSII-------------AESIR 338
Query: 974 DGKATFSDVFKVFFSLTMTAIGISQS-SSFSSDSNKAKSAAASIFAIIDRES-KI----- 1026
DG AT+ D +K +T I I S + + S+F S I
Sbjct: 339 DGLATW-DNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVF----PPSAHIPTILL 392
Query: 1027 ------DPSDESGTILEDV--KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTV--AL 1076
+ ++ + +E S P + +L +K+ + ++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIY--LELKVKLENEYALHRSI 449
Query: 1077 VGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL--QLKWLRQQMGLVSQEPVLFNDT 1134
V ++ + F D LD + LK + + ++ ++F D
Sbjct: 450 VDH--------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDF 500
Query: 1135 --IRANIAY-GKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191
+ I + +A+ + + ++ +IC Y+ +V
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-------------- 546
Query: 1192 AIARAIVKDPKILLLDEATS----ALDAESERVVQDALDRVMK 1230
AI + K + L+ + T AL AE E + ++A +V +
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 83/616 (13%), Positives = 167/616 (27%), Gaps = 187/616 (30%)
Query: 12 ASKSQEEVGKDSSMSGNEHDSEKGK-----QTEKTESVPFYKLFTFADSADTALM----- 61
S + E + SM + ++ + Q +V + + AL+
Sbjct: 95 MSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---KLRQALLELRPA 150
Query: 62 -IIGSIGAIGNG-LCLPLMTLLFGDLINTFGD-----NQNNSETVDKVSKVAVKFVYLGI 114
+ G +G+G + L L + N N + + V ++ K +Y
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 115 GSGIASFLQVTCWMITGERQATRIRGLYLKT-------ILRQDV------AFFDNE---- 157
+ + + + +R L +L +V F+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKIL 269
Query: 158 --TNTGEVVGRMSGDTV----LIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVML 211
T +V +S T L +M + L+ +L + L +L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD------CRPQDLPREVL 323
Query: 212 SSIPL-LAMSGGVMAIMISKMSSRGQG----AYAKAASVVEQTIGSIRTVASFTGEKQAM 266
++ P L++ +A I + K +++E ++ + E + M
Sbjct: 324 TTNPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKM 374
Query: 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNV 326
+ + V + + I+ W+ VVN
Sbjct: 375 --FDRLSV--FPPSAH-----------IPTILLSLI----WFDVIKSDVM-----VVVNK 410
Query: 327 MVAVLTGSMSLGEASPCLSAFG--AGQAAAFKMFETINRKPE-----IDAYD-TKGKILD 378
+ SL E P S + ++ + + +D Y+ K D
Sbjct: 411 LH-----KYSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 379 DIRGDIELRDVYF-SYPAR-----PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432
D+ D YF S+ + + + F
Sbjct: 463 DLIPPYL--DQYFYSHIGHHLKNIEHPERMTLFR-------------------------- 494
Query: 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKI---GLVSQEPVLFTGSIKDNIAYGK---DD 486
V +D +++ +KI +++ Y D+
Sbjct: 495 ---------MVFLD--------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
E V +D LP+ L + + RI L+
Sbjct: 538 DPKYERLVNA-------ILDFLPK--------IEENLICSKYTDLL---------RIALM 573
Query: 547 DEATSALDAESEKVVQ 562
E A+ E+ K VQ
Sbjct: 574 AE-DEAIFEEAHKQVQ 588
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 22/187 (11%)
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
++ + E ++ + + I V + L + I + +E
Sbjct: 156 VVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIG----ELASE 211
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHG-----TQLSGGQKQ------RIAIARAILK 539
TE + + + V G T LSGG++ R+A++ +
Sbjct: 212 IFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAG 271
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIAVI----- 593
+ +L+LDE T LD E + + ++R + VI+ H AD + I
Sbjct: 272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENG 331
Query: 594 -HRGKIV 599
+ ++V
Sbjct: 332 SSKVEVV 338
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 20/181 (11%)
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN--A 1161
LD E +L L+ G + A A +
Sbjct: 163 LDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYS 222
Query: 1162 HKFICSLQQGYDTMVGERGL-----QLSGGQKQRV------AIARAIVKDPKILLLDEAT 1210
+ + + V G LSGG++ + A++ + + +L+LDE T
Sbjct: 223 EVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT 282
Query: 1211 SALDAESERVVQDALDRVMKN-RTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
LD E R + ++R +K ++V+H AD + + + + +
Sbjct: 283 PYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV------IRISLENGSSKVE 336
Query: 1270 I 1270
+
Sbjct: 337 V 337
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 32/228 (14%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKLQL 1114
+ + +NL + G+ AL+G +G+GKST+ +L Y + G I LDG I +L
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 1115 KWLRQQMG--LVSQEP-----VLFNDTIRA--NIAYGKGGDATE--AEIQAASEMANAHK 1163
R + G L Q P V + +R G+ E +++ A E+ +
Sbjct: 75 -DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD--- 130
Query: 1164 FICSLQQGYDTMVGERGLQ--LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVV 1221
+D R L SGG+K+R I + +V +P +LDE S LD ++ +VV
Sbjct: 131 --------WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVV 182
Query: 1222 QDALDRVM-KNRTTVVVAH--R-LSTIKNADMIAVVKNGVIVEKGKHE 1265
++ + N +V+ H R L+ I+ D + V+ +G +V G E
Sbjct: 183 ARGVNAMRGPNFGALVITHYQRILNYIQ-PDKVHVMMDGRVVATGGPE 229
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 43/230 (18%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQAGEVLIDGINLKEFQ 454
E I G ++ + G AL+G +G+GKST+ ++ Y + GE+L+DG N+ E
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73
Query: 455 LQWIRKKIG--LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT-----ELANAAKFIDK 507
R + G L Q PV G +R+A A+F K
Sbjct: 74 PD-ERARKGLFLAFQYPVEVPGV-----------TIANFLRLALQAKLGREVGVAEFWTK 121
Query: 508 LPQGIDTL------------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ + ++ L G SGG+K+R I + ++ +P +LDE S LD
Sbjct: 122 VKKALELLDWDESYLSRYLNEG-----FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176
Query: 556 ESEKVVQEALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
++ KVV ++ + N +++ H R+ D + V+ G++V G
Sbjct: 177 DALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 34/231 (14%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKLQL 1114
D + R L+L + G+ A++G +GSGKST+ + L + Y+ G + G ++ L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 1115 KWLRQQMG--LVSQEP-----VLFNDTIRA--NIAYGKGGDATEAEIQAASEMANAHKFI 1165
R G + Q P V ++ N G + + + F
Sbjct: 92 -EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG---QETL-------DRFDFQ 140
Query: 1166 CSLQQ-----GYDTMVGERGLQ--LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
+++ + R + SGG+K+R I + V +P++ +LDE+ S LD ++
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 200
Query: 1219 RVVQDALDRVM-KNRTTVVVAH--R-LSTIKNADMIAVVKNGVIVEKGKHE 1265
+VV D ++ + R+ ++V H R L IK D + V+ G IV+ G
Sbjct: 201 KVVADGVNSLRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDFT 250
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 35/231 (15%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQAGEVLIDGINLKEFQ 454
++ I G S+ + G A++G +GSGKST+ + + E Y+ G V G +L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALS 90
Query: 455 LQWIRKKIG--LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA--NAAKFIDKLP 509
+ R G + Q PV G S + + +R + F D +
Sbjct: 91 PE-DRAGEGIFMAFQYPVEIPGVSNQFFLQ-----TALNAVRSYRGQETLDRFDFQDLME 144
Query: 510 QGIDTL------------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ I L VG SGG+K+R I + + +P + +LDE+ S LD ++
Sbjct: 145 EKIALLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
Query: 558 EKVVQEALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGTHS 605
KVV + ++ + R+ +IV H R+ D + V+++G+IV+ G +
Sbjct: 200 LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 1182 QLSGGQKQRVAIA------RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKN-RTT 1234
LSGG++ + +A + + +L+LDE T LD E R + ++R +K
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 1235 VVVAHRLSTIKNADMI 1250
++V+H AD +
Sbjct: 117 ILVSHDEELKDAADHV 132
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 6e-08
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 521 TQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
T LSGG++ + +A + + +L+LDE T LD E + + ++R +
Sbjct: 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 575 VIV-AHRLSTVRNADMI------AVIHRGKIV 599
VI+ +H AD + + ++V
Sbjct: 116 VILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 1182 QLSGGQKQRV------AIARAIVKDP-KILLLDEATSALDAESERVVQDALDRVMKNRTT 1234
LSGG++ V AIA A++ + + ++LDE T LD + + +V
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1235 VVVAHRLSTIKNADMIAVVK 1254
+++ H AD+I VK
Sbjct: 340 IIITHHRELEDVADVIINVK 359
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 522 QLSGGQKQRIAIARAI-------LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
LSGG++ +A++ + ++LDE T LD + E ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 575 VIVAHRLSTVRNADMIAVIHRGK 597
+I+ H AD+I + +
Sbjct: 340 IIITHHRELEDVADVIINVKKDG 362
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1288 | ||||
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-97 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-91 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-96 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-94 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-90 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-85 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-86 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-85 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-85 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-81 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-75 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-75 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-53 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-49 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-45 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-44 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-45 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-44 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-44 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-43 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-43 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-42 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-40 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-38 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-38 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-38 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-35 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-38 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-37 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-37 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-36 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-37 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-36 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-33 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-33 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-33 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-31 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-32 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-31 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-25 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-24 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-16 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-10 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 5e-16 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 4e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-06 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 8e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.004 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.002 |
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 309 bits (792), Expect = 3e-97
Identities = 133/254 (52%), Positives = 180/254 (70%), Gaps = 2/254 (0%)
Query: 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVS 1089
DE +++ G++E +V+F YP R +V R++NLKI AGKTVALVG SGSGKST+ S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 1090 LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE 1149
L+ RFYD D GHI +DG ++++ L LR Q+ LVSQ LFNDT+ NIAY + + +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 1150 AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209
+I+ A+ MA A FI + G DT++GE G+ LSGGQ+QR+AIARA+++D IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 1210 TSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLIN 1269
TSALD ESER +Q ALD + KNRT++V+AHRLSTI+ AD I VV++G+IVE+G H L+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 1270 IPDGFYASLIALHS 1283
G YA L +
Sbjct: 240 -QHGVYAQLHKMQF 252
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 292 bits (748), Expect = 4e-91
Identities = 124/253 (49%), Positives = 176/253 (69%), Gaps = 3/253 (1%)
Query: 371 DTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS 430
D +++D GD+E R+V F+YP R ++ I +G T ALVG+SGSGKST+ S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT- 489
LI RFYD G +L+DG +L+E+ L +R ++ LVSQ LF ++ +NIAY + + +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QRIAIARA+L+D IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
TSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I V+ G IVE+GTHS+L+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 610 DPEGAYSQLIRLQ 622
G Y+QL ++Q
Sbjct: 240 QH-GVYAQLHKMQ 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 307 bits (788), Expect = 1e-96
Identities = 128/248 (51%), Positives = 177/248 (71%), Gaps = 3/248 (1%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
+E +G I++ HVSF+Y + + +D+NL I G+TVA VG SG GKST+++L+ RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAA 1155
D +G I +DG I+ LR Q+GLV Q+ +LF+DT++ NI G+ AT+ E+ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEA 127
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
++MANAH FI +L QGYDT VGERG++LSGGQKQR++IAR + +P IL+LDEATSALD
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 1216 ESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFY 1275
ESE ++Q+ALD + K+RTT++VAHRLSTI +AD I V++NG IVE G H LI G Y
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAY 246
Query: 1276 ASLIALHS 1283
L ++ +
Sbjct: 247 EHLYSIQN 254
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 301 bits (773), Expect = 1e-94
Identities = 127/246 (51%), Positives = 169/246 (68%), Gaps = 2/246 (0%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
++ +G I++ V F Y I ++SI G T A VG SG GKST+I+LI RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
D +G++LIDG N+K+F +R +IGLV Q+ +LF+ ++K+NI G+ AT EE+ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
++ANA FI LPQG DT VGE G +LSGGQKQR++IAR L +P IL+LDEATSALD E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE ++QEALD + +RTT+IVAHRLST+ +AD I VI G IVE GTH +L+ +GAY
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE 247
Query: 617 QLIRLQ 622
L +Q
Sbjct: 248 HLYSIQ 253
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 289 bits (742), Expect = 3e-90
Identities = 104/245 (42%), Positives = 153/245 (62%), Gaps = 3/245 (1%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
++G ++ VSF YP+RPDV V + L +R G+ ALVG +GSGKSTV +LLQ Y
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
P G + LDG + + + ++L +Q+ V QEP +F +++ NIAYG T EI AA+
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1157 EMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAE 1216
+ AH FI L QGYDT V E G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALDA
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1217 SERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGF 1274
S+ V+ L + +R+ +++ LS ++ AD I ++ G I E G H+ L+ G
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGC 244
Query: 1275 YASLI 1279
Y +++
Sbjct: 245 YWAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 274 bits (702), Expect = 9e-85
Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 4/244 (1%)
Query: 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
+ G ++ +DV F+YP RP+ + G + ++ G ALVG +GSGKSTV +L++ Y P
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATEL 498
G++L+DG L +++ +++ +++ V QEP +F S+++NIAYG T EEI A
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ A FI LPQG DT V E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S+
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 559 KVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
V++ L +R+ +++ LS V AD I + G I E GTH +L+E G Y
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 246
Query: 617 QLIR 620
+++
Sbjct: 247 AMVQ 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 277 bits (711), Expect = 4e-86
Identities = 109/242 (45%), Positives = 165/242 (68%), Gaps = 2/242 (0%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+I ++ F+Y + ++NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ + ++ A+++A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVV 1221
H FI L++GY+T+VGE+G LSGGQ+QR+AIARA+V +PKIL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1222 QDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281
+ ++ K RT +++AHRLST+KNAD I V++ G IVE+GKH+ L++ P+ Y+ L L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1282 HS 1283
S
Sbjct: 239 QS 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 276 bits (707), Expect = 2e-85
Identities = 116/240 (48%), Positives = 162/240 (67%), Gaps = 1/240 (0%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DI R++ F Y + I ++SI G +VG+SGSGKST+ LI+RFY P+ G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 276 bits (708), Expect = 1e-85
Identities = 108/243 (44%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ HV F Y Q+ RD++ + + +A G SG GKST+ SLL+RFY P AG I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
T+DG I + L+ R Q+G VSQ+ + TIR N+ YG GD T+ ++ ++A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
F+ ++ +T VGERG+++SGGQ+QR+AIARA +++PKIL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1223 DALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALH 1282
ALD +MK RTT+V+AHRLSTI +AD I ++ G I GKH L+ YA ++
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQ 238
Query: 1283 SSA 1285
+
Sbjct: 239 LTV 241
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 265 bits (678), Expect = 1e-81
Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 4/240 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R V F+Y +EQI S + A G SG GKST+ SL+ERFY P AGE+
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAA 502
IDG + L+ R +IG VSQ+ + G+I++N+ YG + D T E++ +LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
F++ +P ++T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ALD +M RTT+++AHRLST+ +AD I I +G+I G H++LV Y++ + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 248 bits (634), Expect = 4e-75
Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 34/293 (11%)
Query: 992 TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
T I + ++F + F + + + D + E+ +VSF
Sbjct: 1 TGIIMENVTAFWEE----------GFGELLEKVQQSNGDRKHSSDEN--------NVSFS 42
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
+ V +++NL I G+ +A+ G +GSGK++++ L+ + G I G
Sbjct: 43 HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG----- 97
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQG 1171
++ SQ + TI+ NI +G E ++ + + I +
Sbjct: 98 --------RVSFCSQFSWIMPGTIKENIIFG--VSYDEYRYKSVVKACQLQQDITKFAEQ 147
Query: 1172 YDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES-ERVVQDALDRVMK 1230
+T++GE G+ LSGGQ+ R+++ARA+ KD + LLD LD + E+V + + ++M
Sbjct: 148 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 207
Query: 1231 NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHS 1283
N+T ++V ++ ++ AD I ++ G G L ++ F + L+ +
Sbjct: 208 NKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDT 260
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 247 bits (633), Expect = 6e-75
Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 28/300 (9%)
Query: 351 QAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISIS 410
A + F + K + D K ++ +V FS+ + +++I
Sbjct: 9 TAFWEEGFGELLEKVQQSNGDRKHSSDEN--------NVSFSHLCLVGNPVLKNINLNIE 60
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
G A+ G +GSGK++++ LI + G + G ++ SQ
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSW 107
Query: 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
+ G+IK+NI +G + + + I K + +T++GE G LSGGQ+ R
Sbjct: 108 IMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 166
Query: 531 IAIARAILKDPRILLLDEATSALDAES-EKVVQEALDRIMVNRTTVIVAHRLSTVRNADM 589
I++ARA+ KD + LLD LD + E+V + + ++M N+T ++V ++ +R AD
Sbjct: 167 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 226
Query: 590 IAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSS 649
I ++H+G GT S+L S+L+ ++ +E +R+S I E+LR S
Sbjct: 227 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE-----ERRSSILTETLRRFS 281
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 184 bits (468), Expect = 2e-53
Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 12/230 (5%)
Query: 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +V+ Y + +++NL I+ G+ V+++G SGSGKST+++++ P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1102 ITLDGVEIQKL----QLKWLRQQMGLVSQEPVLFND-TIRANIAYG-KGGDATEAEIQAA 1155
+ +D ++ L K R ++G V Q+ L T N+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1156 SEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDA 1215
+ A + L+ + + QLSGGQ+QRVAIARA+ +P I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELE---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1216 ESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGK 1263
++ + L ++ + +T VVV H ++ + + I +K+G + + K
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 173 bits (440), Expect = 1e-49
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 9/228 (3%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L++V +Y +++I G +++G SGSGKST++++I P GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 443 VLIDGINL----KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE 497
V ID I + + R KIG V Q+ L + +N+ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A K+ + + QLSGGQ+QR+AIARA+ +P I+L D+ T ALD+++
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 558 EKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+ + + L ++ +T V+V H ++ R + I + G++ +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 162 bits (412), Expect = 1e-45
Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 22/247 (8%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E++L +++ ++ + LNL I+ G+ + L+G SG GK+T + ++ +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASE 1157
I ++ L + + +V Q ++ T+ NIA+ K E + +
Sbjct: 63 IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 1158 MANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAES 1217
+ +++ + QLSGGQ+QRVA+ARAIV +P +LL+DE S LDA+
Sbjct: 121 AE-----LLQIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171
Query: 1218 ERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGF 1274
++ + ++ + TT+ V H D IAV+ G +++ G + P+
Sbjct: 172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSV 231
Query: 1275 Y-ASLIA 1280
+ A+ I
Sbjct: 232 FVATFIG 238
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 157 bits (399), Expect = 7e-44
Identities = 61/245 (24%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+++L ++ + N + +++I G L+G SG GK+T + +I +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVA 495
+ + L + I +V Q ++ ++ +NIA+ D + +R A
Sbjct: 63 IYFGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL + +++ P QLSGGQ+QR+A+ARAI+ +P +LL+DE S LDA
Sbjct: 121 AELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 556 ESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++ + ++ + TT+ V H D IAV++RG++++ G+ +++ P
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229
Query: 613 GAYSQ 617
+
Sbjct: 230 SVFVA 234
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 161 bits (408), Expect = 2e-45
Identities = 50/240 (20%), Positives = 101/240 (42%), Gaps = 29/240 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L V+ L+ ++RAG+ + LVG +G+GKST+++ + G I
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP-VLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
G ++ L +SQ+ F + + + + +
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK-------DPKILLLDEATSALD 1214
D +G QLSGG+ QRV +A +++ ++LLLDE ++LD
Sbjct: 114 ---------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 164
Query: 1215 AESERVVQDALDRVMK-NRTTVVVAHRLS-TIKNADMIAVVKNGVIVEKGKHENLINIPD 1272
+ + L + + V+ +H L+ T+++A ++K G ++ G+ E ++ P+
Sbjct: 165 VAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 157 bits (397), Expect = 7e-44
Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 28/239 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+DV S S + +G LVG +G+GKST+++ + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
G L+ + + +SQ+ F + + + D T E+ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-------DPRILLLDEATSALDA 555
+D +G QLSGG+ QR+ +A +L+ ++LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 556 ESEKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + V+ +H L+ R+A ++ GK++ G +++ P
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 160 bits (405), Expect = 2e-44
Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 31/250 (12%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
++ + + +Y +V + ++L+ RAG ++++G SGSGKST + + P G
Sbjct: 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 1102 ITLDGVEIQKL-------------QLKWLRQQMGLVSQEPVLFND-TIRANIAYG----K 1143
I ++G I + QL+ LR ++ +V Q L++ T+ N+
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 1144 GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKI 1203
G +A +A +A + G+ + LSGGQ+QRV+IARA+ +P +
Sbjct: 119 GLSKHDARERALKYLA--------KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDV 170
Query: 1204 LLLDEATSALDA-ESERVVQDALDRVMKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEK 1261
LL DE TSALD V++ + +T VVV H + ++ + + + G I E+
Sbjct: 171 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230
Query: 1262 GKHENLINIP 1271
G E + P
Sbjct: 231 GDPEQVFGNP 240
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 155 bits (393), Expect = 6e-43
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 38/258 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + D++ Y ++ G S+ +G +++G SGSGKST + I P G +
Sbjct: 3 LHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 444 LIDGINL-------------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
+++G N+ + QL+ +R ++ +V Q L++ ++ +N+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 484 --KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
K DA ++ ++ + K P LSGGQ+QR++IARA+ +P
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYP-----------VHLSGGQQQRVSIARALAMEP 168
Query: 542 RILLLDEATSALDA-ESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+LL DE TSALD +V++ +T V+V H + R+ + + +H+GKI
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 600 EKGTHSKLVEDPEGAYSQ 617
E+G ++ +P+ Q
Sbjct: 229 EEGDPEQVFGNPQSPRLQ 246
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 156 bits (395), Expect = 2e-43
Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 24/242 (9%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIA-----YGKGGDATEAEI 1152
+ +DG E+ L +L R+Q+G++ Q L + T+ N+A D + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+ L +D+ LSGGQKQRVAIARA+ +PK+LL DEATSA
Sbjct: 122 TELLSLVG-------LGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1213 LDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
LD + R + + L + + T +++ H + +K D +AV+ NG ++E+ + +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1270 IP 1271
P
Sbjct: 231 HP 232
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 153 bits (388), Expect = 2e-42
Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 25/248 (10%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L ++ + Q + S+ + +G ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG------KDDATTEEI 492
VL+DG L E +L R++IG++ Q L + ++ N+A D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
L D P LSGGQKQR+AIARA+ +P++LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 553 LDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609
LD + + + E L I + T +++ H + V+ D +AVI G+++E+ T S++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 610 DPEGAYSQ 617
P+ +Q
Sbjct: 231 HPKTPLAQ 238
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 145 bits (366), Expect = 5e-40
Identities = 43/214 (20%), Positives = 91/214 (42%), Gaps = 26/214 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +S Y D V + + I G V G +G GK+T++ + + P G I
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
+GV I K ++ ++ + +E ++ ++ + G + EI A E
Sbjct: 59 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
++ +LS G +RV +A ++ + +I +LD+ A+D +S+
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1219 RVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAV 1252
V ++ ++K + V+++ R + D+
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNEN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 140 bits (354), Expect = 2e-38
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+RD+ Y ++ + +++I G G +G GK+T++ I + P GE+
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRVATEL 498
+ +G+ + ++ KI + +E ++ S++D + EI A E
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
KL + LS G +R+ +A +L + I +LD+ A+D +S+
Sbjct: 114 VEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595
V +++ I+ + VI++ R + D+ +H+
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 142 bits (359), Expect = 1e-38
Identities = 56/234 (23%), Positives = 104/234 (44%), Gaps = 13/234 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ + Y + + ++LK+ G+ V L+G +G+GK+T +S + G I
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1103 TLDGVEIQKL-QLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMAN 1160
+G +I R + LV + +F + T+ N+ G + I+ E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121
Query: 1161 AHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220
I SL + + G LSGG++Q +AI RA++ PK+L++DE + L
Sbjct: 122 ----IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 1221 VQDALDRVMK-NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPD 1272
V + + ++ + T ++V A V++ G IV +GK L++
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 135 bits (340), Expect = 5e-36
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E++ ++ Y A G + + G L+G +G+GK+T +S I Q G++
Sbjct: 7 LEVQSLHVYYGAI---HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 444 LIDGINL-KEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANA 501
+ +G ++ + R I LV + +F ++ +N+ G + +E + +L
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWI 122
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+L + + L G LSGG++Q +AI RA++ P++L++DE + L V
Sbjct: 123 FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 562 QEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
E + +I T ++V A V+ G+IV +G S+L+++
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 142 bits (359), Expect = 2e-38
Identities = 52/248 (20%), Positives = 106/248 (42%), Gaps = 30/248 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++ + + + +++ + G ++G +GSGKST+++++ F D G +
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1103 TLDGVEIQKLQLKWL-RQQMGLVSQEPVLFND-TIRANIAYG---------------KGG 1145
+ +I + L + Q P + T+ N+ G K
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1146 DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILL 1205
E ++ A ++ L YD G +LSGGQ + V I RA++ +PK+++
Sbjct: 122 PKEEEMVEKAFKILE----FLKLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIV 173
Query: 1206 LDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGK 1263
+DE + + + + + + K T +++ HRL + N D + V+ NG I+ +G+
Sbjct: 174 MDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233
Query: 1264 HENLINIP 1271
E I
Sbjct: 234 GEEEIKNV 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 133 bits (337), Expect = 1e-35
Identities = 47/240 (19%), Positives = 105/240 (43%), Gaps = 15/240 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ ++ + + G SIS++ G ++G +GSGKST+I++I F G V
Sbjct: 5 LRTENIVKYFGEF---KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 444 LIDGINL-KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG---KDDATTEEIRVATEL 498
+ ++ + + I Q P ++ +N+ G ++ + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 499 ANAAKFIDKLPQ-----GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
+ ++K + + L +LSGGQ + + I RA++ +P+++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + + T +I+ HRL V N D + V+ G+I+ +G + +++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 241
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 141 bits (357), Expect = 2e-38
Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 27/242 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L V + +V R+++L+++ G+ + L+G SG GK+T + ++ +P G I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1103 TLDGVEIQKLQ----LKWLRQQMGLVSQEPVLFNDTIR------ANIAYGKGGDATEAEI 1152
+ + + + + + +V Q L+ + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+ +E+ L + + +LSGGQ+QRVA+ RAIV+ P++ L+DE S
Sbjct: 121 REVAELLG-------LTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 1213 LDAESERVVQDALDRV--MKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
LDA+ ++ L ++ TT+ V H D IAV+ GV+ + G + + +
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
Query: 1270 IP 1271
P
Sbjct: 230 KP 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 139 bits (351), Expect = 1e-37
Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 14/239 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L DV+ + S+ + G L+G SG GK+T + +I +P G++
Sbjct: 4 VRLVDVWKVFGEV---TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 444 LIDGINL----KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
I + K + + I +V Q L+ + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ L G+ L+ +LSGGQ+QR+A+ RAI++ P++ L+DE S LDA+
Sbjct: 121 REV--AELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 560 VVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ L ++ + TT+ V H D IAV++RG + + G+ ++ + P +
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 138 bits (350), Expect = 2e-37
Identities = 51/236 (21%), Positives = 107/236 (45%), Gaps = 13/236 (5%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G + + + + ++ + ++ +I G+ L+G +G+GK+T + ++ P +G
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMA 1159
+T+ G + + + +R+ + + +E + + + + G + EM
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG--FYASSSSEIEEMV 114
Query: 1160 NAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESER 1219
I L + V S G +++ IARA++ +P++ +LDE TS LD + R
Sbjct: 115 ERATEIAGLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 1220 VVQDALDRVMKNRTTVV-VAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDG 1273
V+ L + + T++ +H + ++ D IA++ NG IVE G E L
Sbjct: 171 EVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 135 bits (342), Expect = 2e-36
Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 21/249 (8%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G + ++D+ + +I G S I G L+G +G+GK+T + +I P +G
Sbjct: 1 GAVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIAYGKDDATTEEIRVATEL 498
V + G N + +RK I + +E G G +++ EI
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE----- 111
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ + G+ + + + S G +++ IARA++ +PR+ +LDE TS LD +
Sbjct: 112 EMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169
Query: 559 KVVQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP----- 611
+ V++ L + T++ +H + V D IA+IH G IVE GT +L E
Sbjct: 170 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229
Query: 612 EGAYSQLIR 620
E + ++++
Sbjct: 230 EEVFEEVVK 238
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 136 bits (344), Expect = 9e-37
Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 22/245 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +V+ + +V V +D+NL I G+ V VG SG GKST++ ++ +G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
+ + + +G+V Q L+ ++ N+++G G Q +++
Sbjct: 58 FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN-QRVNQV 114
Query: 1159 ANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESE 1218
A + L D LSGGQ+QRVAI R +V +P + LLDE S LDA
Sbjct: 115 AE----VLQLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 1219 RVVQDALDRV--MKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP-DGF 1274
++ + R+ RT + V H AD I V+ G + + GK L + P D F
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 226
Query: 1275 YASLI 1279
A I
Sbjct: 227 VAGFI 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 135 bits (341), Expect = 2e-36
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L++V ++ + ++ I G VG SG GKST++ +I +G++
Sbjct: 1 VQLQNVTKAWGEV---VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
I + + + +G+V Q L+ S+ +N+++G K + + +
Sbjct: 58 FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E+ A +D+ P+ LSGGQ+QR+AI R ++ +P + LLDE S LDA
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613
++ + R+ + RT + V H AD I V+ G++ + G +L P
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224
Query: 614 AYSQ 617
+
Sbjct: 225 RFVA 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 128 bits (322), Expect = 1e-33
Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 15/223 (6%)
Query: 1063 DLNLKIRAGK-TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
LN+ G+ L+G +G+GKS + L+ PD G + L+G +I L R+ +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72
Query: 1122 GLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERG 1180
G V Q+ LF ++ NIAYG + EMA G ++ +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL--------GIAHLLDRKP 124
Query: 1181 LQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRV--MKNRTTVVVA 1238
+LSGG++QRVA+ARA+V P++LLLDE SA+D +++ V+ + L V + + V
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 1239 HRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYASLIA 1280
H L AD +AV+ NG IVEKGK + L + +G A ++
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 125 bits (315), Expect = 9e-33
Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 16/242 (6%)
Query: 399 EQIFSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
E+ F +++ L+G +G+GKS + LI P GEV ++G ++ L
Sbjct: 8 EKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PL 65
Query: 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
R+ IG V Q+ LF S+ NIAYG + E + +KL GI
Sbjct: 66 PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAH 118
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
L+ +LSGG++QR+A+ARA++ PR+LLLDE SA+D +++ V+ E L + +
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178
Query: 573 TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQT 631
+ V H L AD +AV+ G+IVEKG +L G ++ + + + +
Sbjct: 179 PILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKI 238
Query: 632 ID 633
+D
Sbjct: 239 LD 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 125 bits (314), Expect = 8e-33
Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 18/241 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +S K+ + +L+LK+ +G+ ++G +G+GK+ + L+ F+ PD+G I
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
LDG ++ L + + V Q LF + + + A
Sbjct: 58 LLDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1163 KFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQ 1222
K L + L LSGG++QRVA+ARA+V +PKILLLDE SALD ++ +
Sbjct: 116 KIEHLLDR--------NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 1223 DALDRV--MKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP-DGFYASL 1278
+ L + T + + H + + AD IAVV +G +++ GK E + P +G AS
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASF 227
Query: 1279 I 1279
+
Sbjct: 228 V 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 121 bits (304), Expect = 2e-31
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ + + S+ + SG ++G +G+GK+ + LI F+ P +G +
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
L+DG ++ + L + I V Q LF ++K N+ +G ++ + + A
Sbjct: 58 LLDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
K L + LSGG++QR+A+ARA++ +P+ILLLDE SALD +++ +
Sbjct: 116 KIEHLL--------DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 563 EALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
E L + T + + H + R AD IAV+ GK+++ G ++ E P
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 125 bits (314), Expect = 1e-32
Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 24/242 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + +VS + + V ++N+ I G+ ++G SG+GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1102 ITLDGVEIQKLQLKWLR---QQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEI 1152
+ D + + +++G+V Q L+ + T NIA+ + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSA 1212
+ +++ + H + + +LSG Q+QRVA+ARA+VKDP +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1213 LDAESERVVQDALDRV--MKNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269
LDA + + V T +VV+H + I AD + V+ G +V+ GK E+L +
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 1270 IP 1271
P
Sbjct: 231 NP 232
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 120 bits (303), Expect = 4e-31
Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 13/239 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++V + + +I+I +G ++G SG+GK+T + +I P GE+
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 444 LIDGINLKEFQLQWIR---KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
D + + +KIG+V Q L+ + +NIA+ + + + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
AK +D I ++ +LSG Q+QR+A+ARA++KDP +LLLDE S LDA
Sbjct: 123 EVAKILD-----IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 560 VVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ + + + T ++V+H + + AD + V+ +GK+V+ G L ++P
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 102 bits (255), Expect = 1e-25
Identities = 21/191 (10%), Positives = 47/191 (24%), Gaps = 30/191 (15%)
Query: 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND 1133
+ + GE G GK+T+V + A + V + + + + + ++ + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1134 TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAI 1193
+ G V + + A
Sbjct: 63 FFTSKKLVG------------------------------SYGVNVQYFEELAIPILERAY 92
Query: 1194 ARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVV 1253
A K++++DE + N V I +
Sbjct: 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152
Query: 1254 KNGVIVEKGKH 1264
V++E
Sbjct: 153 PGAVLIELTPE 163
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 98.1 bits (243), Expect = 5e-24
Identities = 19/191 (9%), Positives = 46/191 (24%), Gaps = 29/191 (15%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
+ G+ G GK+T++ I +A + + E + + + I ++ + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
G V + A
Sbjct: 64 FTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYRE 94
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595
A +++++DE + N V I +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 596 GKIVEKGTHSK 606
++E ++
Sbjct: 155 AVLIELTPENR 165
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 80.7 bits (197), Expect = 1e-16
Identities = 49/322 (15%), Positives = 101/322 (31%), Gaps = 7/322 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+R KP I A I + I + LLI I+ + I
Sbjct: 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 768 LALGAGSFLL-----SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
+ + F++ + Y NK++ IR + + + ++ +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
+ + L I + T L I F +L L L + P ++ Y
Sbjct: 123 RVINDVEQTKDF--ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
++ + + E ++ V I V SF E+ + + KK + ++
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSF 1002
+ F A + GA L G T + L + + + +
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVAS 300
Query: 1003 SSDSNKAKSAAASIFAIIDRES 1024
+ ++ ++ +F +ID +
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDY 322
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 61.5 bits (147), Expect = 2e-10
Identities = 43/310 (13%), Positives = 88/310 (28%), Gaps = 4/310 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVS---KVAVKFVYLGIGS 116
+ I I L+ LL I+ +N + + + I
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQD 176
F++ T + IR + F+ N + R+ D +D
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS-RVINDVEQTKD 133
Query: 177 AMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQ 236
+ + T + I F LTL L P ++ V + K++
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 237 GAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVML 296
A A+ + + + I V SF E N+ K ++ +
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 297 IVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFK 356
+ + + G L + G + + + L + A+ +
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 357 MFETINRKPE 366
+F+ I+ +
Sbjct: 314 VFQLIDEDYD 323
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 78.4 bits (191), Expect = 5e-16
Identities = 57/316 (18%), Positives = 121/316 (38%), Gaps = 4/316 (1%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
RRL P ++ IA + N L+ +++ F + + L+
Sbjct: 5 RRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGF--GKTDRSVLLWMPLVV 62
Query: 768 LALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLS 827
+ L + S SY + K++ +R F ++ M V++FD+ +
Sbjct: 63 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT-- 120
Query: 828 ADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFM 887
D+ V + AL +V+ ++ I+ F SWQL++I++V+ P++ ++ K
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 888 KGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947
+ S + + + + A + + V F +E + + K G++ S
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSN 1007
+ A YA + T + VF S+ + ++ ++
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 1008 KAKSAAASIFAIIDRE 1023
+ +A ++FAI+D E
Sbjct: 301 RGMAACQTLFAILDSE 316
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 64.6 bits (155), Expect = 2e-11
Identities = 48/307 (15%), Positives = 114/307 (37%), Gaps = 5/307 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ I I N M L L++ + S + + + + L I GI
Sbjct: 17 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS----VLLWMPLVVIGLMILRGIT 72
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++ C + +R ++ VAFFD ++ + + + G
Sbjct: 73 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSG 132
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ + + ++ + W L+++++ P+++++ V++ +S Q
Sbjct: 133 ALITVVREGASIIGLFIMMFYYS-WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 191
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ + EQ + + V F G++ + K G++ A+ I ++ LI
Sbjct: 192 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ A ++ + + G + V +++ L + + F G AA +F
Sbjct: 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 311
Query: 360 TINRKPE 366
++ + E
Sbjct: 312 ILDSEQE 318
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 4e-07
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 8/186 (4%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476
L G G GK+T+I V + I + +S +
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 477 KDNIAYGKDDATTEEIRVATELANAAKFIDK-----LPQGIDTLVGEHGTQLSGGQKQRI 531
+ ++ + + T A + + G V + ++ + I
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591
R L P ++L +V+E +R V V +R + D++
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLP--DIVT 182
Query: 592 VIHRGK 597
+ +
Sbjct: 183 CVQSSR 188
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 19/187 (10%), Positives = 47/187 (25%), Gaps = 26/187 (13%)
Query: 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131
+ V L G G GK+T++ + E + + + + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1132 NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ----QGYDTMVGERGLQLSGGQ 1187
+ + + + S A + + G V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1188 KQRVAIARAIVKDPKILLLDEATSALDAESE----------------------RVVQDAL 1225
+ + R + P ++L ++ D +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181
Query: 1226 DRVMKNR 1232
V +R
Sbjct: 182 TCVQSSR 188
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 8e-04
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 521 TQLSGGQKQRIAI----ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG+K A+ A + +LDE +ALD + + + + R I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 577 VA-HRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608
V + + +D + ++R ++ SK++
Sbjct: 391 VISLKNTMFEKSDALVGVYR---QQQENSSKII 420
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 1184 SGGQKQRVAI----ARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVA 1238
SGG+K A+ A + +LDE +ALD + + + + R + +V++
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 1239 HRLSTIKNADMIAVV 1253
+ + + +D + V
Sbjct: 394 LKNTMFEKSDALVGV 408
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.0 bits (87), Expect = 0.002
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
G + L G GSGKST+ L H D
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 38
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1288 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.68 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.51 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.41 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.38 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.27 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.25 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.15 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.04 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.96 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.81 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.72 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.17 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.88 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.62 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.56 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.51 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.26 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.22 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.14 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.09 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.04 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.03 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.03 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.01 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.87 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.84 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.84 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.66 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.66 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.56 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.55 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.44 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.43 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.36 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.32 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.13 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.1 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.03 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.92 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.9 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.85 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.83 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.82 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.81 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.78 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.73 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.7 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.66 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.65 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.56 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.51 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.46 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.45 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.44 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.43 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.38 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.32 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.28 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.2 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.04 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.03 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.02 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.01 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.96 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.95 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.9 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.89 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.83 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.81 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.74 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.73 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.69 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.65 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.57 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.56 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.45 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.41 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.41 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.35 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.31 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.23 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.14 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.13 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.11 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.04 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.98 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.95 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.92 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.85 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.84 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.74 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.72 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 92.63 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.61 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.6 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.49 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.47 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.44 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.43 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.39 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.36 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.32 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.3 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.25 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.22 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.21 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.19 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.18 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.17 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.13 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.12 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.12 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.12 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.11 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.09 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.08 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.04 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.9 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.89 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.86 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.82 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.81 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.73 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.71 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.68 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.67 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.62 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.62 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.6 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.56 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.54 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.53 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.53 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.5 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.49 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.45 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 91.34 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.32 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.25 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.21 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.01 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.99 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.99 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.94 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.91 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.85 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.73 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.69 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.65 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.65 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.64 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.51 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.5 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.44 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.4 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.38 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.37 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.37 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.34 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.25 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.23 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.14 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.11 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.08 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.04 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.0 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.97 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.96 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.85 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.85 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 89.84 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 89.84 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.82 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.77 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.69 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.68 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.63 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.57 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.55 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 89.54 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.53 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.47 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.33 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.31 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 89.29 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.24 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.11 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.09 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.06 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.92 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.91 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.9 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.85 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.84 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.83 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.8 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.7 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.7 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.7 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.69 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 88.65 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.55 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.53 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.5 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.47 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.45 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.37 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.33 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.3 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.29 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 88.28 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 88.26 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.25 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.24 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.12 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 88.12 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.1 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.1 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 88.08 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 88.05 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.04 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.03 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.02 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.02 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.99 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.89 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.85 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.82 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.81 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.8 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.8 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.77 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.74 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.67 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.66 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 87.65 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.63 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.61 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.59 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.54 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.49 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.49 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 87.46 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.27 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.22 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.21 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.06 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.04 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.02 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.0 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.9 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.76 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 86.73 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.56 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.55 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.47 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.44 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.36 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.33 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.32 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 86.3 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.26 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.23 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.15 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.14 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 85.98 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.91 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.89 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.85 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.78 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.7 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.62 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.61 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.59 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.57 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.47 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.4 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.4 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.36 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 85.28 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.27 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.22 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.21 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.21 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.16 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.16 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.08 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.06 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.01 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.01 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.01 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.95 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 84.93 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 84.78 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.72 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.68 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.64 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.58 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.56 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.55 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 84.51 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 84.5 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.33 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.32 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.3 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.3 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.29 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 84.25 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 84.16 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.13 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.06 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 84.06 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 84.03 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.96 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 83.91 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.91 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.87 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 83.86 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.82 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.62 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.61 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 83.54 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 83.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 83.44 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.43 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.42 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 83.33 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 83.32 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 83.27 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 83.25 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.23 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.23 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.14 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 83.12 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.08 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.97 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.95 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.86 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 82.76 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 82.71 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 82.61 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 82.58 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 82.54 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.54 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 82.34 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.32 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 82.29 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.86 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.85 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 81.72 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.69 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.65 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 81.47 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 81.42 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 81.36 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.21 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.07 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.06 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 81.01 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 80.96 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.95 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 80.91 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 80.91 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 80.79 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.71 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 80.68 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 80.65 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 80.6 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 80.22 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 80.02 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=519.64 Aligned_cols=242 Identities=52% Similarity=0.854 Sum_probs=233.5
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 87638999788887999886431010389738969999859999888899998423799976599899505677978874
Q 000777 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1288)
Q Consensus 1039 ~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR 1118 (1288)
.+|.|+|+||+|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+++++.+++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 78879999889995999-97606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 11388835787741219999715999999999999999980002889752114302004999989936999999999970
Q 000777 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV 1198 (1288)
Q Consensus 1119 ~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll 1198 (1288)
++++||||++.+|++||+|||.++. +..++++++++++.+++++++..+|+||||.++++|.+||||||||+|||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~-~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 4145651015689987999985158-679999999999996979999736242010333888984999999999999985
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHH
Q ss_conf 79978897366779997989999999998718963999815904664038899995988978159356621999378999
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278 (1288)
Q Consensus 1199 ~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l 1278 (1288)
++|+|||||||||+||++|+..|++.|+...+++|+|+||||++.++.||+|++|++|+|++.|+|+||+++ ++.|++|
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l 249 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHL 249 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHH
T ss_conf 599899983765447977999999999987538889999689999985999999989999998899999868-8499999
Q ss_pred HHHHH
Q ss_conf 99851
Q 000777 1279 IALHS 1283 (1288)
Q Consensus 1279 ~~~~~ 1283 (1288)
|+.|.
T Consensus 250 ~~~Q~ 254 (255)
T d2hyda1 250 YSIQN 254 (255)
T ss_dssp HTTTT
T ss_pred HHHCC
T ss_conf 99747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=515.85 Aligned_cols=241 Identities=45% Similarity=0.798 Sum_probs=232.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 38999788887999886431010389738969999859999888899998423799976599899505677978874113
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i 1121 (1288)
+|+|+||+|+|++. .+++|+||||+|+|||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88835787741219999715999999999999999980002889752114302004999989936999999999970799
Q 000777 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDP 1201 (1288)
Q Consensus 1122 ~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p 1201 (1288)
+||||++++|++||+|||.++. +..++++++.+++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTS-TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8982446557840003522357-554388899999997557888763201344327878866988989875443444165
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHH
Q ss_conf 78897366779997989999999998718963999815904664038899995988978159356621999378999998
Q 000777 1202 KILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281 (1288)
Q Consensus 1202 ~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~ 1281 (1288)
+|||||||||+||+.++..|++.|++..+++|+|+||||++.++.||+|+||++|+|+|.|+|+||++++++.|++||+.
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 13556477655598999999999999858998999978899998499999998999999889999982998789999998
Q ss_pred HHC
Q ss_conf 510
Q 000777 1282 HSS 1284 (1288)
Q Consensus 1282 ~~~ 1284 (1288)
|..
T Consensus 239 Q~d 241 (241)
T d2pmka1 239 QSD 241 (241)
T ss_dssp HCC
T ss_pred HCC
T ss_conf 139
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=513.42 Aligned_cols=245 Identities=53% Similarity=0.856 Sum_probs=235.1
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 68876389997888879998864310103897389699998599998888999984237999765998995056779788
Q 000777 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1288)
Q Consensus 1037 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~ 1116 (1288)
+...|.|+|+||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|++||.|+++++.++
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 7783079999889992999-976353328998599999999999985999999986216888468987880121110665
Q ss_pred HHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 74113888357877412199997159999999999999999800028897521143020049999899369999999999
Q 000777 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1117 lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARA 1196 (1288)
+|++++||||++.+|++|+++|+.++.....++++++++++.+++.+++..+|+||+|.++++|.+||||||||||||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 42068799502544786202433205722089999999999981799997355441014348889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 70799788973667799979899999999987189639998159046640388999959889781593566219993789
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276 (1288)
Q Consensus 1197 ll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~ 1276 (1288)
|+++|+|||||||||+||+.++..|++.|++..+++|+|+||||++.++.||+|+||++|+|+|.|+|+||+++ ++.|+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~ 245 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYA 245 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf 95499889951644458988999999999875227889999887999985999999989999998899999868-93999
Q ss_pred HHHHHHH
Q ss_conf 9999851
Q 000777 1277 SLIALHS 1283 (1288)
Q Consensus 1277 ~l~~~~~ 1283 (1288)
+||+.|.
T Consensus 246 ~l~~~Q~ 252 (253)
T d3b60a1 246 QLHKMQF 252 (253)
T ss_dssp HHHHHTC
T ss_pred HHHHHCC
T ss_conf 9999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=504.14 Aligned_cols=242 Identities=43% Similarity=0.726 Sum_probs=230.4
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 88763899978888799988643101038973896999985999988889999842379997659989950567797887
Q 000777 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1288)
Q Consensus 1038 ~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~l 1117 (1288)
..+|.|+|+||+|+||+.++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++...+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41138883578774121999971599999999999999998000288975211430200499998993699999999997
Q 000777 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197 (1288)
Q Consensus 1118 R~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAl 1197 (1288)
|++++||||++++|++|++||+.++.....+++++.++++.+++.+++..+|+|+++.+++.|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 079978897366779997989999999998718--963999815904664038899995988978159356621999378
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFY 1275 (1288)
Q Consensus 1198 l~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~--~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y 1275 (1288)
+++|+|+|||||||+||+.++..|++.|++..+ ++|+|+||||++.++.||||+||++|+|+|.|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000777 1276 ASLIA 1280 (1288)
Q Consensus 1276 ~~l~~ 1280 (1288)
++||+
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=504.52 Aligned_cols=239 Identities=45% Similarity=0.758 Sum_probs=230.2
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997888879998864310103897389699998599998888999984237999765998995056779788741138
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1122 (1288)
|+++||+|+|++. +++|+||||+|+|||++||+||||||||||+++|+|+++|++|+|++||.|+++++.+++|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88357877412199997159999999999999999800028897521143020049999899369999999999707997
Q 000777 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPK 1202 (1288)
Q Consensus 1123 ~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ 1202 (1288)
||||++.+|++|++||+.++.....++++++++++.+++.+++..+|++++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 88973667799979899999999987189639998159046640388999959889781593566219993789999985
Q 000777 1203 ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALH 1282 (1288)
Q Consensus 1203 ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~ 1282 (1288)
|||||||||+||+.++..|++.|++..+++|+|+||||++.++.||+|+||++|+|++.|+|+||+++ ++.|++|++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868-96999999998
Q ss_pred HC
Q ss_conf 10
Q 000777 1283 SS 1284 (1288)
Q Consensus 1283 ~~ 1284 (1288)
..
T Consensus 239 ~~ 240 (242)
T d1mv5a_ 239 LT 240 (242)
T ss_dssp CC
T ss_pred HH
T ss_conf 50
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=476.59 Aligned_cols=240 Identities=48% Similarity=0.796 Sum_probs=231.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 39999699998998887654320288828989999869999289999999728889983899999607988988874443
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 462 (1288)
+|+|+||+|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++..++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88847887894309999713999999999999999807899998298984220028999999579999999998606997
Q 000777 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1288)
Q Consensus 463 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ 542 (1288)
+||+|+|++|++||+|||.++.++.++++++.+++.+++.+++..+|.|++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 89982778898989899999999986189649998059224420287999959889684394577309984689999998
Q 000777 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 543 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1288)
|+|||||||+||+.+++.+.+.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+++++++++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred H
Q ss_conf 6
Q 000777 623 E 623 (1288)
Q Consensus 623 ~ 623 (1288)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred C
T ss_conf 3
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=480.70 Aligned_cols=245 Identities=52% Similarity=0.812 Sum_probs=233.6
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH
Q ss_conf 56898663999969999899888765432028882898999986999928999999972888998389999960798898
Q 000777 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455 (1288)
Q Consensus 376 ~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 455 (1288)
+.....|.|+++||+|+|++. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.|+++++.
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 87 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred CCCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCH
T ss_conf 777778879999889995999-9760644389983998999988999809999999971278630001539987530788
Q ss_pred HHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88744438884788789430999971399999999999999980789999829898422002899999957999999999
Q 000777 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 456 ~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lAR 535 (1288)
.++|++++||+|+|++|++||+|||.++.++.++++++++++.+++++++..+|+|++|.++++|.+||||||||++|||
T Consensus 88 ~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 88634145651015689987999985158679999999999996979999736242010333888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 86069978998277889898989999999998618964999805922442028799995988968439457730998468
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1288)
Q Consensus 536 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1288)
|++++|+|+|||||||+||++++..+.+.++.+.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y 246 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAY 246 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 985599899983765447977999999999987538889999689999985999999989999998899999868-8499
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q 000777 616 SQLIRLQ 622 (1288)
Q Consensus 616 ~~~~~~~ 622 (1288)
+++++.|
T Consensus 247 ~~l~~~Q 253 (255)
T d2hyda1 247 EHLYSIQ 253 (255)
T ss_dssp HHHHTTT
T ss_pred HHHHHHC
T ss_conf 9999974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=470.74 Aligned_cols=245 Identities=50% Similarity=0.833 Sum_probs=232.5
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH
Q ss_conf 68986639999699998998887654320288828989999869999289999999728889983899999607988988
Q 000777 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1288)
Q Consensus 377 ~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 456 (1288)
.+...|.|+|+||+|+|+++ ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|+.+++..
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 67783079999889992999-97635332899859999999999998599999998621688846898788012111066
Q ss_pred HHHCCEEEECCCCCCCCHHHHHHHHCCCC-CCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 87444388847887894309999713999-99999999999980789999829898422002899999957999999999
Q 000777 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1288)
Q Consensus 457 ~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lAR 535 (1288)
.+|+.++||+|+|++|++|+++|+.++.+ ..++++++.+++.+++.++++.+|+|++|.++++|.+|||||||||+|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 86069978998277889898989999999998618964999805922442028799995988968439457730998468
Q 000777 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1288)
Q Consensus 536 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1288)
|++++|+|||||||||+||+.++..+++.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y 244 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVY 244 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 995499889951644458988999999999875227889999887999985999999989999998899999868-9399
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q 000777 616 SQLIRLQE 623 (1288)
Q Consensus 616 ~~~~~~~~ 623 (1288)
+++++.|+
T Consensus 245 ~~l~~~Q~ 252 (253)
T d3b60a1 245 AQLHKMQF 252 (253)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHCC
T ss_conf 99999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=463.10 Aligned_cols=241 Identities=41% Similarity=0.727 Sum_probs=227.1
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 98663999969999899888765432028882898999986999928999999972888998389999960798898887
Q 000777 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1288)
Q Consensus 379 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 458 (1288)
+.+|.|+|+||+|+|+++++.++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.+||.|+.+++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCHHHHHHHHCCCC-CCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 444388847887894309999713999-9999999999998078999982989842200289999995799999999986
Q 000777 459 RKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 459 ~~~i~~v~Q~~~lf~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal 537 (1288)
|++++||+|+|++|++|++||+.++.. ..+++++..+++.+++.+++..+|+|+++.+++.|.+||||||||++||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 069978998277889898989999999998618--964999805922442028799995988968439457730998468
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1288)
Q Consensus 538 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1288)
+++|+|+|||||||+||+.++..+++.+.++.+ ++|+|+||||++.+..||+|++|++|+|+++|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000777 616 SQLIR 620 (1288)
Q Consensus 616 ~~~~~ 620 (1288)
+.+++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=460.93 Aligned_cols=236 Identities=45% Similarity=0.763 Sum_probs=224.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99996999989988876543202888289899998699992899999997288899838999996079889888744438
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 463 (1288)
++++||+|+|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++..++|++++
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCHHHHHHHHCCC-CCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 884788789430999971399-9999999999999807899998298984220028999999579999999998606997
Q 000777 464 LVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1288)
Q Consensus 464 ~v~Q~~~lf~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ 542 (1288)
||+|+|++|++|++||+.++. +..++++++.+++.+++.+++..+|+++++.++++|.+||||||||++||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 89982778898989899999999986189649998059224420287999959889684394577309984689999998
Q 000777 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1288)
Q Consensus 543 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1288)
|+|||||||+||+.++..+++.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868-96999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=417.44 Aligned_cols=221 Identities=26% Similarity=0.457 Sum_probs=200.1
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 76389997888879998864310103897389699998599998888999984237999765998995056779788741
Q 000777 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1288)
Q Consensus 1040 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~ 1119 (1288)
...|.|+|++|.+ +|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 8967999769899-----7677375999859999999989998299999999579747882899999-------------
Q ss_pred CEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 13888357877412199997159999999999999999800028897521143020049999899369999999999707
Q 000777 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199 (1288)
Q Consensus 1120 ~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~ 1199 (1288)
+++|+||++.+|++|++||+.++. ..++.+.+.+++.+.+.+++..+|+++++.+++.|.+||||||||++|||||++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~ 175 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 175 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCCCEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999981643026760321420333--456057999999977699998461233235555423779999999999999986
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHH
Q ss_conf 9978897366779997989999999-998718963999815904664038899995988978159356621999378999
Q 000777 1200 DPKILLLDEATSALDAESERVVQDA-LDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASL 1278 (1288)
Q Consensus 1200 ~p~ILiLDEpTS~LD~~te~~I~~~-l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l 1278 (1288)
+|+|||||||||+||+.++..+++. +....+++|+|+||||++.++.||||++|++|+|++.|+|+||++. .+.|++.
T Consensus 176 ~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~ 254 (281)
T d1r0wa_ 176 DADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSK 254 (281)
T ss_dssp CCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHH
T ss_conf 963513338554489899999999999886289999999252899985999999989999998789999605-9489998
Q ss_pred HHH
Q ss_conf 998
Q 000777 1279 IAL 1281 (1288)
Q Consensus 1279 ~~~ 1281 (1288)
+..
T Consensus 255 ~~~ 257 (281)
T d1r0wa_ 255 LMG 257 (281)
T ss_dssp HHT
T ss_pred HCC
T ss_conf 729
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-45 Score=378.28 Aligned_cols=221 Identities=29% Similarity=0.475 Sum_probs=191.8
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 63899978888799988643101038973896999985999988889999842379997659989950567797887411
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1041 ~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~ 1120 (1288)
..|+++||+++|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|++||+|+.+.+.. |++
T Consensus 5 ~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ 79 (239)
T d1v43a3 5 VEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 79 (239)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGT
T ss_pred CEEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCE
T ss_conf 74999879999999---9998130678879989999999998299999999758999878799916413547700--015
Q ss_pred EEEECCCCCCCH-HHHHHHHHCCCC-CCCCHHH----HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 388835787741-219999715999-9999999----9999998000288975211430200499998993699999999
Q 000777 1121 MGLVSQEPVLFN-DTIRANIAYGKG-GDATEAE----IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1121 i~~v~Qd~~lf~-gTi~eNl~~~~~-~~~s~~~----i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalA 1194 (1288)
++||||++.+|+ .|++||+.++.. ...+.++ +.++++.+++.+ ........||||||||++||
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHH
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHH
T ss_conf 8998003353422209999999998739999999999999998759855-----------66099546999998899997
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 99707997889736677999798999999999871--89639998159046640-3889999598897815935662199
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIP 1271 (1288)
Q Consensus 1195 RAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~~~ 1271 (1288)
|||+.+|+|||||||||+||+.+...|++.|++.. .++|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 66404998243068866689899989999999998731980799948999999869999999899999985999998689
Q ss_pred CCHHHH
Q ss_conf 937899
Q 000777 1272 DGFYAS 1277 (1288)
Q Consensus 1272 ~g~y~~ 1277 (1288)
...|.+
T Consensus 229 ~~~~~~ 234 (239)
T d1v43a3 229 NSVFVA 234 (239)
T ss_dssp SBHHHH
T ss_pred CCHHHH
T ss_conf 998999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=391.33 Aligned_cols=218 Identities=28% Similarity=0.483 Sum_probs=196.9
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 63999969999899888765432028882898999986999928999999972888998389999960798898887444
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 461 (1288)
..++|+|++| . +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 9679997698--9---97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 38884788789430999971399999999999999980789999829898422002899999957999999999860699
Q 000777 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1288)
Q Consensus 462 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~ 541 (1288)
++|++|+|++|++|++||+.++.. .++.+++.+++.+.+.+++..+|+++++.+++.|.+||||||||++|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999816430267603214203334-5605799999997769999846123323555542377999999999999998696
Q ss_pred CEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 78998277889898989999999-9986189649998059224420287999959889684394577309984689999
Q 000777 542 RILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 542 ~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1288)
+|+|||||||+||+.++..+++. +..+.+++|+|+|||+++.+..||+|++|++|++++.|+|+||+.. .+.|...+
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHH
T ss_conf 3513338554489899999999999886289999999252899985999999989999998789999605-94899987
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=384.18 Aligned_cols=219 Identities=28% Similarity=0.453 Sum_probs=191.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997888879998864310103897389699998599998888999984237999765998995056779788741138
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1122 (1288)
|+++||+++|++ ..+|+|+||+|++||++||+||||||||||++++.|+++|++|+|++||+++.+.+. .|++++
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEE
T ss_conf 999999999899---999811177886998999998999829999999965878888889999997788864--443222
Q ss_pred EECCCCCCCHH-HHHHHHHCCCCC-----CCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88357877412-199997159999-----999999999999800028897521143020049999899369999999999
Q 000777 1123 LVSQEPVLFND-TIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA 1196 (1288)
Q Consensus 1123 ~v~Qd~~lf~g-Ti~eNl~~~~~~-----~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARA 1196 (1288)
||||++.+|+. |++||+.++... ...++++.++++.+++.++.... ...||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHHH
T ss_conf 3433420264333788978999875998899999999999757886566489-----------65699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf 707997889736677999798999999999871--89639998159046640-388999959889781593566219993
Q 000777 1197 IVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDG 1273 (1288)
Q Consensus 1197 ll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~~~~g 1273 (1288)
|+.+|++|+|||||++||+.+...|++.|++.. .++|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HHHH
Q ss_conf 7899
Q 000777 1274 FYAS 1277 (1288)
Q Consensus 1274 ~y~~ 1277 (1288)
.|.+
T Consensus 225 ~~v~ 228 (232)
T d2awna2 225 RFVA 228 (232)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 7999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=383.58 Aligned_cols=224 Identities=29% Similarity=0.433 Sum_probs=192.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 389997888879998864310103897389699998599998888999984237999765998995056779---78874
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLR 1118 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~---~~~lR 1118 (1288)
.|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.|+...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEECCCCCCCHH-HHHHHHHCCCC-CCCCH----HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 113888357877412-19999715999-99999----9999999980002889752114302004999989936999999
Q 000777 1119 QQMGLVSQEPVLFND-TIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1119 ~~i~~v~Qd~~lf~g-Ti~eNl~~~~~-~~~s~----~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrla 1192 (1288)
++++||||++.+|+. |++||+.++.. ...+. +.+.++++.+++.++... ....||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999999866591766648-----------95459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 9999707997889736677999798999999999871--89639998159046640-38899995988978159356621
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 lARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~ 1269 (1288)
|||||+.+|++|||||||++||+.+...+++.|++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CCCCHHHH
Q ss_conf 99937899
Q 000777 1270 IPDGFYAS 1277 (1288)
Q Consensus 1270 ~~~g~y~~ 1277 (1288)
++...|.+
T Consensus 231 ~P~~~~~~ 238 (242)
T d1oxxk2 231 NPVSIQVA 238 (242)
T ss_dssp SCSSHHHH
T ss_pred CCCCHHHH
T ss_conf 89997998
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=381.69 Aligned_cols=217 Identities=31% Similarity=0.516 Sum_probs=191.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997888879998864310103897389699998599998888999984237999765998995056779788741138
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1122 (1288)
|+++||+++|++ .+|+|+||+|++||.+||+||||||||||+++|+|+.+|++|+|++||.|+++.+.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCHH-HHHHHHHCCC--CCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88357877412-1999971599--99999999999999800028897521143020049999899369999999999707
Q 000777 1123 LVSQEPVLFND-TIRANIAYGK--GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199 (1288)
Q Consensus 1123 ~v~Qd~~lf~g-Ti~eNl~~~~--~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~ 1199 (1288)
||||++.+|+. |++||+.++. .....++++.++++.+++.++.+ .....||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHHC
T ss_conf 15121111746657788888776405538999999999825655575-----------8955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 997889736677999798999999999871--89639998159046640-388999959889781593566219993789
Q 000777 1200 DPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGFYA 1276 (1288)
Q Consensus 1200 ~p~ILiLDEpTS~LD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~ 1276 (1288)
+|++||||||||+||+.+...+++.|++.. .+.|+|+|||+++.+.. ||||++|.+|++++.|+++|+++++...|.
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v 224 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 67714434787679989999999999999864796899974999999996999999979999998699999868998799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=381.24 Aligned_cols=222 Identities=26% Similarity=0.452 Sum_probs=191.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 389997888879998864310103897389699998599998888999984237999765998995056779788----7
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW----L 1117 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~----l 1117 (1288)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEECCCCCCCHH-HHHHHHHCCCC-CCCCH----HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 4113888357877412-19999715999-99999----999999998000288975211430200499998993699999
Q 000777 1118 RQQMGLVSQEPVLFND-TIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRV 1191 (1288)
Q Consensus 1118 R~~i~~v~Qd~~lf~g-Ti~eNl~~~~~-~~~s~----~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrl 1191 (1288)
|++++||||++.+|+. |++||+.++.. ...+. +.+.++++.+++.++... ....||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHH
T ss_conf 25512002212223101166763306877299989999999999987599667629-----------9334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999707997889736677999798999999999871--89639998159046640-3889999598897815935662
Q 000777 1192 AIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLI 1268 (1288)
Q Consensus 1192 alARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl 1268 (1288)
+|||||+.+|++|||||||++||+.+...|++.|++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred CCCCCHHHH
Q ss_conf 199937899
Q 000777 1269 NIPDGFYAS 1277 (1288)
Q Consensus 1269 ~~~~g~y~~ 1277 (1288)
.++...|.+
T Consensus 229 ~~P~~~~~~ 237 (240)
T d1g2912 229 DKPANTFVA 237 (240)
T ss_dssp HSCSBHHHH
T ss_pred HCCCCHHHH
T ss_conf 289998989
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=381.18 Aligned_cols=223 Identities=30% Similarity=0.487 Sum_probs=191.2
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899978888799988-64310103897389699998599998888999984237999765998995056779788---74
Q 000777 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~---lR 1118 (1288)
|+++||++.|+.... ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCHH-HHHHHHHCCC-----CCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 113888357877412-1999971599-----9999999999999980002889752114302004999989936999999
Q 000777 1119 QQMGLVSQEPVLFND-TIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVA 1192 (1288)
Q Consensus 1119 ~~i~~v~Qd~~lf~g-Ti~eNl~~~~-----~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrla 1192 (1288)
++++||||++.+|+. |++||+.++. +....++++.++++.+++.+.. ......|||||+||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355-----------4894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 99997079978897366779997989999999998718--9639998159046640-38899995988978159356621
Q 000777 1193 IARAIVKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1193 lARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~--~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~ 1269 (1288)
|||||+.+|++|||||||++||+.+...|++.|++..+ +.|+|+|||+++.+.. ||||++|++|+|+|.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHHH
Q ss_conf 9993789
Q 000777 1270 IPDGFYA 1276 (1288)
Q Consensus 1270 ~~~g~y~ 1276 (1288)
++...|.
T Consensus 231 ~P~~~~t 237 (240)
T d3dhwc1 231 HPKTPLA 237 (240)
T ss_dssp SSCCTTT
T ss_pred CCCCHHH
T ss_conf 8998577
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-44 Score=370.48 Aligned_cols=224 Identities=28% Similarity=0.432 Sum_probs=190.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 389997888879998864310103897389699998599998888999984237999765998995056779--------
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-------- 1113 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~-------- 1113 (1288)
.|+++||+++|++ .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCEEEECCCCCCCH-HHHHHHHHCCC--CCCCCH----HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf -----7887411388835787741-21999971599--999999----99999999800028897521143020049999
Q 000777 1114 -----LKWLRQQMGLVSQEPVLFN-DTIRANIAYGK--GGDATE----AEIQAASEMANAHKFICSLQQGYDTMVGERGL 1181 (1288)
Q Consensus 1114 -----~~~lR~~i~~v~Qd~~lf~-gTi~eNl~~~~--~~~~s~----~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~ 1181 (1288)
...+|++++||+|++.+|+ .|++||+.++. ....+. +.+.++++.+++.+.... ....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC----------CCCC
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430----------6822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEE
Q ss_conf 899369999999999707997889736677999798999999999871-89639998159046640-3889999598897
Q 000777 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIV 1259 (1288)
Q Consensus 1182 ~LSgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aDrI~vl~~G~iv 1259 (1288)
.|||||+||++|||||..+|++|||||||++||+.+...|++.|++.. +++|+|+|||+++.+.. ||||+||.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHCCCCCHHHHH
Q ss_conf 8159356621999378999
Q 000777 1260 EKGKHENLINIPDGFYASL 1278 (1288)
Q Consensus 1260 e~Gt~~eLl~~~~g~y~~l 1278 (1288)
+.|+++|+++++...|.+-
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ 247 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQ 247 (258)
T ss_dssp EEECHHHHHHSCCSHHHHH
T ss_pred EECCHHHHHHCCCCHHHHH
T ss_conf 9849999983899999999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-45 Score=375.24 Aligned_cols=212 Identities=31% Similarity=0.487 Sum_probs=177.1
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899978888799988-643101038973896999985999988889999842379997659989950567797887----
Q 000777 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---- 1117 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~l---- 1117 (1288)
|+++||+++|+.... ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+..++..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCHH-HHHHHHHCCC----CCCCCHHH----HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 4113888357877412-1999971599----99999999----9999998000288975211430200499998993699
Q 000777 1118 RQQMGLVSQEPVLFND-TIRANIAYGK----GGDATEAE----IQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQK 1188 (1288)
Q Consensus 1118 R~~i~~v~Qd~~lf~g-Ti~eNl~~~~----~~~~s~~~----i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQr 1188 (1288)
|++|+||+|++.+|+. |++||+.++. ....+.++ +.+.++.+++.+. ........||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHH----------HHCCCHHHCCHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345----------53488023899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999999707997889736677999798999999999871--89639998159046640388999959889781593
Q 000777 1189 QRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1189 QrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~ 1264 (1288)
||++|||||+.+|++||||||||+||+.+...|++.|+++. .++|+|+|||+++.++.||||++|++|+|++.|+.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-43 Score=362.40 Aligned_cols=220 Identities=25% Similarity=0.412 Sum_probs=184.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 389997888879998864310103897389699998599998888999984237999765998995056779788741-1
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-Q 1120 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~-~ 1120 (1288)
-|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|+++|.|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 7999618999899---8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCHH-HHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3888357877412-199997159999999999999999800028897521143020049999899369999999999707
Q 000777 1121 MGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK 1199 (1288)
Q Consensus 1121 i~~v~Qd~~lf~g-Ti~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~ 1199 (1288)
++|+||++.+|+. |++||+.++.......+...+.++.+ ..+-.+++.........||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI------FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH------HHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 3556765545776369999998887327888999999999------9874176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 997889736677999798999999999871-89639998159046640-388999959889781593566219
Q 000777 1200 DPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1200 ~p~ILiLDEpTS~LD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~~ 1270 (1288)
+|++|+|||||++||+.+...+++.|+++. +++|+|++||+++.+.. ||||++|++|++++.|+++|++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.7e-43 Score=359.21 Aligned_cols=222 Identities=27% Similarity=0.459 Sum_probs=193.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 39999699998998887654320288828989999869999289999999728889983899999607988988874443
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 462 (1288)
.|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++++|+++|++|+|.++|.|+..++.. ++++
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCC-HHHHHHHHCCCCC--CCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88847887894-3099997139999--99999999999807899998298984220028999999579999999998606
Q 000777 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 463 ~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~ 539 (1288)
+||+|+|.+|. .|++||+.++... .+.++.... +.+.++.+ |++.........||||||||++|||||..
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 998003353422209999999998739999999999-----99999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 9978998277889898989999999998618--9649998059224420-287999959889684394577309984689
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1288)
Q Consensus 540 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1288)
+|++|+|||||++||+.+...+++.++++.+ +.|+|+|||++..+.. ||||++|++|+|++.|+++++..+|...|.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 99824306886668989998999999999873198079994899999986999999989999998599999868999899
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4e-43 Score=357.82 Aligned_cols=214 Identities=22% Similarity=0.372 Sum_probs=180.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 389997888879998864310103897389699998599998888999984237999765998995056779788741-1
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-Q 1120 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~-~ 1120 (1288)
-++++||+++|++ .++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|+++|.|+...++.+.++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCH-HHHHHHHHCCCCC--------------CCCHH----HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 388835787741-2199997159999--------------99999----9999999800028897521143020049999
Q 000777 1121 MGLVSQEPVLFN-DTIRANIAYGKGG--------------DATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGL 1181 (1288)
Q Consensus 1121 i~~v~Qd~~lf~-gTi~eNl~~~~~~--------------~~s~~----~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~ 1181 (1288)
++++||++.+|+ .|++||+.++... ...++ ++.++++..+ ++........
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----------LSHLYDRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGG
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC-----------CCHHCCCCHH
T ss_conf 87257764247887423214301333034504566542135328999999999987619-----------6302059535
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEE
Q ss_conf 899369999999999707997889736677999798999999999871-89639998159046640-3889999598897
Q 000777 1182 QLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIV 1259 (1288)
Q Consensus 1182 ~LSgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aDrI~vl~~G~iv 1259 (1288)
.||||||||++|||||+.+|++|||||||++||+.+...|++.|++.. +|+|+|+|+|+++.+.. ||||+||++|+|+
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 69918888999999997592723243976569999999999999999978998999947699999869999999699899
Q ss_pred EECCHHHHHC
Q ss_conf 8159356621
Q 000777 1260 EKGKHENLIN 1269 (1288)
Q Consensus 1260 e~Gt~~eLl~ 1269 (1288)
+.|+++|+.+
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEECHHHHHH
T ss_conf 9966899865
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-43 Score=358.45 Aligned_cols=217 Identities=27% Similarity=0.478 Sum_probs=187.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99996999989988876543202888289899998699992899999997288899838999996079889888744438
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 463 (1288)
|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++++|++.|++|+|.++|.++.+.+.. +++++
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 99999999989---99998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCCH-HHHHHHHCCCCCC--C----HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88478878943-0999971399999--9----999999999807899998298984220028999999579999999998
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 464 ~v~Q~~~lf~~-ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARa 536 (1288)
||+|+|.+|.. |++||+.++.... + ++++.+.++..++.+ .......+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----------~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865-----------6648965699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf 606997899827788989898999999999861--89649998059224420-287999959889684394577309984
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1288)
Q Consensus 537 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1288)
|+.+|++++|||||++||+.+...+++.++++. .+.|+|++||+++.+.. ||||++|++|++++.|++++++++|..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HHH
Q ss_conf 689
Q 000777 614 AYS 616 (1288)
Q Consensus 614 ~~~ 616 (1288)
.|.
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.9e-43 Score=354.67 Aligned_cols=215 Identities=25% Similarity=0.447 Sum_probs=184.8
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 63899978888799988643101038973896999985999988889999842379997659989950567797887411
Q 000777 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1041 ~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~ 1120 (1288)
|.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.|+.+ ....+|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred EEEECCCCCCCHH-HHHHHHHCCCC-CCCCHHHHHH----HHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 3888357877412-19999715999-9999999999----9998000288975211430200499998993699999999
Q 000777 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDATEAEIQA----ASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIA 1194 (1288)
Q Consensus 1121 i~~v~Qd~~lf~g-Ti~eNl~~~~~-~~~s~~~i~~----al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalA 1194 (1288)
++||||++.+|.. |++||+.+... ...+.+++++ +++..++ +....+....||||||||++||
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~lSgG~~qrv~iA 145 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-----------GEKIKDRVSTYSKGMVRKLLIA 145 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-----------GGGGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHCCHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999986797-----------8888504533799898999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 99707997889736677999798999999999871-89639998159046640-388999959889781593566219
Q 000777 1195 RAIVKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1195 RAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~~ 1270 (1288)
||++.+|+||+|||||++||+.+...+++.+++.. .++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 146 ~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 146 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 998659998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.3e-43 Score=359.74 Aligned_cols=226 Identities=29% Similarity=0.447 Sum_probs=191.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 399996999989988876543202888289899998699992899999997288899838999996079889---88874
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1288)
Q Consensus 383 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~ 459 (1288)
.|+++|++++|+.. +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEECCCCCCCCH-HHHHHHHCCCCC--CCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 443888478878943-099997139999--99999999999807899998298984220028999999579999999998
Q 000777 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1288)
Q Consensus 460 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARa 536 (1288)
++++||+|+|.+|.. |++|||.++... .+.++..+. +.+.++.+ |++........+||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHC--CHHHHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 451477304334666657777665567613799999999-----99998665--91766648954599999858998757
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf 6069978998277889898989999999998618--9649998059224420-287999959889684394577309984
Q 000777 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1288)
Q Consensus 537 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1288)
|..+|+++++||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++++..+|..
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~ 234 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 76046614544786679989988998999999863598799997999999996999999989999998699999868999
Q ss_pred HHH
Q ss_conf 689
Q 000777 614 AYS 616 (1288)
Q Consensus 614 ~~~ 616 (1288)
.|.
T Consensus 235 ~~~ 237 (242)
T d1oxxk2 235 IQV 237 (242)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.8e-42 Score=352.59 Aligned_cols=215 Identities=29% Similarity=0.514 Sum_probs=187.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99996999989988876543202888289899998699992899999997288899838999996079889888744438
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 463 (1288)
|+++|++++|++ .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.|+.+++.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCH-HHHHHHHCCCC---CCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88478878943-09999713999---999999999999807899998298984220028999999579999999998606
Q 000777 464 LVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1288)
Q Consensus 464 ~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~ 539 (1288)
||+|++.+|.. |++||+.++.. ....+++.++++.. |+..........||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------CCHHHHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf 1512111174665778888877640553899999999982-----------56555758955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 997899827788989898999999999861--89649998059224420-28799995988968439457730998468
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1288)
Q Consensus 540 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1288)
+|++|+|||||++||+.+...+.+.++++. .+.|+|+|||+++.+.. ||||++|.+|++++.|++++++++|...+
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 6771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.7e-43 Score=358.09 Aligned_cols=220 Identities=28% Similarity=0.498 Sum_probs=188.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 399996999989988876543202888289899998699992899999997288899838999996079889888----7
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW----I 458 (1288)
Q Consensus 383 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~----~ 458 (1288)
.|+++|++++|+ +..+++|+||++++||+++|+||||||||||+++|+|++.|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEECCCCCCCCH-HHHHHHHCCCC--CCCHHH----HHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 4443888478878943-09999713999--999999----9999998078999982989842200289999995799999
Q 000777 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1288)
Q Consensus 459 ~~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri 531 (1288)
|++++||+|+|.+|.. |++||+.++.. ..+.++ +.+.++.+ |+.........+||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~-----------~l~~~~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----------GLTELLNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-----------TCGGGTTCCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHH
T ss_conf 255120022122231011667633068772999899999999999875-----------996676299334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 999986069978998277889898989999999998618--9649998059224420-2879999598896843945773
Q 000777 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1288)
Q Consensus 532 ~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1288)
+|||||..+|++|+|||||++||+.+...+++.++++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred CCCCCHHH
Q ss_conf 09984689
Q 000777 609 EDPEGAYS 616 (1288)
Q Consensus 609 ~~~~~~~~ 616 (1288)
.+|...|.
T Consensus 229 ~~P~~~~~ 236 (240)
T d1g2912 229 DKPANTFV 236 (240)
T ss_dssp HSCSBHHH
T ss_pred HCCCCHHH
T ss_conf 28999898
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-43 Score=358.03 Aligned_cols=221 Identities=31% Similarity=0.515 Sum_probs=188.2
Q ss_pred EEEEEEEEECCCCCCC-CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 9999699998998887-6543202888289899998699992899999997288899838999996079889888---74
Q 000777 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1288)
Q Consensus 384 i~~~~v~f~y~~~~~~-~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 459 (1288)
|+++|++++|+..... .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.|+..++..+ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCH-HHHHHHHCCCC--CCCH----HHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 443888478878943-09999713999--9999----9999999980789999829898422002899999957999999
Q 000777 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1288)
Q Consensus 460 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~ 532 (1288)
++++||+|++.+|.. |++||+.++.. ..+. +++.+.++.+ |+..........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v-----------gL~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH-----------STTTTTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CCCHHHHCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976-----------9903554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 99986069978998277889898989999999998618--9649998059224420-28799995988968439457730
Q 000777 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1288)
Q Consensus 533 lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1288)
|||||..+|++||+||||++||+.+...+++.++++.+ +.|+|+|||++..+.. ||||++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 998468
Q 000777 610 DPEGAY 615 (1288)
Q Consensus 610 ~~~~~~ 615 (1288)
+|...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.2e-43 Score=356.27 Aligned_cols=213 Identities=30% Similarity=0.472 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCC-CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999969999899888-765432028882898999986999928999999972888998389999960798898887----
Q 000777 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI---- 458 (1288)
Q Consensus 384 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 458 (1288)
|+++|++++|+.... ..+|+|+||++++||+++|+||||||||||+++++|+++|++|+|.++|.++..++..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCH-HHHHHHHCCC-----CCCCHHH-HHHHHHHCCHHHHHHHCCCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 4443888478878943-0999971399-----9999999-99999980789999829898422-0028999999579999
Q 000777 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK-----DDATTEE-IRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQR 530 (1288)
Q Consensus 459 ~~~i~~v~Q~~~lf~~-ti~~ni~~~~-----~~~~~~~-~~~~~~~~~~~~~i~~~~~g~~t-~v~~~g~~LSgGq~qr 530 (1288)
|++++||+|+|.++.. |++||+.++. ...+.++ ...+.+ .++.+ |+.. .......+||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE------CLKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH------HHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH------HHHHH--CHHHHHHCCCHHHCCHHHHHH
T ss_conf 5557788041241768668887757888722478999999999999------88762--423455348802389999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 9999986069978998277889898989999999998618--9649998059224420287999959889684394
Q 000777 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1288)
Q Consensus 531 i~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1288)
++|||||..+|++|+||||||+||+.+...+++.+.++.+ +.|+|+|||+++.+..||||++|++|+|+++|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.5e-42 Score=346.77 Aligned_cols=222 Identities=27% Similarity=0.468 Sum_probs=185.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 399996999989988876543202888289899998699992899999997288899838999996079889--------
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-------- 454 (1288)
Q Consensus 383 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-------- 454 (1288)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCEEEECCCCCCCC-HHHHHHHHCCC---CCCCHH----HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -----8887444388847887894-30999971399---999999----9999999807899998298984220028999
Q 000777 455 -----LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK---DDATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1288)
Q Consensus 455 -----~~~~~~~i~~v~Q~~~lf~-~ti~~ni~~~~---~~~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~ 521 (1288)
...+|++++||+|+|.+|. .|+.||+.++. ...+.. .+.++++.+++.+.. ......
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH----------HCCCCC
T ss_conf 5176799974544899833231411010213656578762999899999999999982995244----------306822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEE
Q ss_conf 999579999999998606997899827788989898999999999861-89649998059224420-2879999598896
Q 000777 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1288)
Q Consensus 522 ~LSgGq~qri~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1288)
+|||||+||++|||||..+|+++||||||++||+.+...+.+.++++. ++.|+|+|||++..+.. ||||++|.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHCCCCCHHHH
Q ss_conf 843945773099846899
Q 000777 600 EKGTHSKLVEDPEGAYSQ 617 (1288)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~ 617 (1288)
+.|++++++.+|...|..
T Consensus 229 ~~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp EEECHHHHHHSCCSHHHH
T ss_pred EECCHHHHHHCCCCHHHH
T ss_conf 984999998389999999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.3e-41 Score=345.56 Aligned_cols=217 Identities=31% Similarity=0.530 Sum_probs=181.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997888879998864310103897389699998599998888999984237999765998995056779788741138
Q 000777 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1288)
Q Consensus 1043 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1122 (1288)
+++ ++..+|.+. .+ |+||+++ ||.++|+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|+
T Consensus 3 l~v-~~~k~~g~~----~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGNF----RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETTE----EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECCE----EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-999998999----99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCH-HHHHHHHHCCCCCCCCHH----HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8835787741-219999715999999999----99999998000288975211430200499998993699999999997
Q 000777 1123 LVSQEPVLFN-DTIRANIAYGKGGDATEA----EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197 (1288)
Q Consensus 1123 ~v~Qd~~lf~-gTi~eNl~~~~~~~~s~~----~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAl 1197 (1288)
||||++.+|+ .|++||+.++.. ..+.. .+.++++.+++.++ .......||||||||++||||+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~-~~~~~~~~~~v~~~l~~~gl~~~-----------~~~~~~~LSGG~kQRvaiAral 141 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHL-----------LDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTT-----------TTCCGGGSCHHHHHHHHHHHHH
T ss_pred EECCCHHHCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHHHHHHH
T ss_conf 25231443522015576665323-36778899999999986383756-----------6579444899998999998777
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCH
Q ss_conf 079978897366779997989999999998718--9639998159046640-3889999598897815935662199937
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMK--NRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINIPDGF 1274 (1288)
Q Consensus 1198 l~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~--~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~~~~g~ 1274 (1288)
+.+|++|+||||||+||+.+...+++.+++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+++|+++.++..
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~ 221 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHH
T ss_conf 51677067528655588799999999999998743976999818999999969999999899999990699983299889
Q ss_pred HHHHHH
Q ss_conf 899999
Q 000777 1275 YASLIA 1280 (1288)
Q Consensus 1275 y~~l~~ 1280 (1288)
.++++.
T Consensus 222 v~~fl~ 227 (240)
T d2onka1 222 VAEFLS 227 (240)
T ss_dssp HHHHGG
T ss_pred HHHHHC
T ss_conf 999857
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6e-41 Score=340.35 Aligned_cols=217 Identities=23% Similarity=0.389 Sum_probs=184.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH-CC
Q ss_conf 39999699998998887654320288828989999869999289999999728889983899999607988988874-44
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1288)
Q Consensus 383 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~ 461 (1288)
-++++|++++|++ ..+|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...++.+.+ ..
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCC-HHHHHHHHCCCCCC---------------C-HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 388847887894-30999971399999---------------9-999999999807899998298984220028999999
Q 000777 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA---------------T-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1288)
Q Consensus 462 i~~v~Q~~~lf~-~ti~~ni~~~~~~~---------------~-~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LS 524 (1288)
+++++|+|.+|. .|++||+.++.... . .+....+ .+.++.+ |++........+||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA------FKILEFL--KLSHLYDRKAGELS 152 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHH------HHHHHHT--TCGGGTTSBGGGSC
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHH------HHHHHHC--CCCHHCCCCHHHCC
T ss_conf 872577642478874232143013330345045665421353289999999------9998761--96302059535699
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEEC
Q ss_conf 579999999998606997899827788989898999999999861-89649998059224420-2879999598896843
Q 000777 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1288)
Q Consensus 525 gGq~qri~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1288)
||||||++||||+..+|++|||||||++||+.+.+.+++.++++. +++|+++|||+++.+.. ||||++|++|++++.|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 18888999999997592723243976569999999999999999978998999947699999869999999699899996
Q ss_pred CHHHHHCC
Q ss_conf 94577309
Q 000777 603 THSKLVED 610 (1288)
Q Consensus 603 ~~~~l~~~ 610 (1288)
+++|+.++
T Consensus 233 ~~~e~~~~ 240 (254)
T d1g6ha_ 233 RGEEEIKN 240 (254)
T ss_dssp ESHHHHHH
T ss_pred CHHHHHHC
T ss_conf 68998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.9e-41 Score=339.88 Aligned_cols=220 Identities=25% Similarity=0.431 Sum_probs=184.1
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH-HC
Q ss_conf 63999969999899888765432028882898999986999928999999972888998389999960798898887-44
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RK 460 (1288)
Q Consensus 382 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~ 460 (1288)
--++++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...+.+.. |.
T Consensus 5 ~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 0799961899989---9888830257888997999999999859999999967888880389842443446608888874
Q ss_pred CEEEECCCCCCCCH-HHHHHHHCCCCCCC-HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 43888478878943-09999713999999-99999999980789999829898422002899999957999999999860
Q 000777 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 461 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~ 538 (1288)
.++|++|++.+|.. |++||+.++..... .+......+.. +..++ ++.........+||||||||++||||+.
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHH-CHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 23556765545776369999998887327888999999999-----98741-7688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 6997899827788989898999999999861-89649998059224420-287999959889684394577309
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+|++|+|||||++||+.+...+++.++++. +++|++++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 29987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.1e-40 Score=333.69 Aligned_cols=218 Identities=28% Similarity=0.458 Sum_probs=187.3
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 63999969999899888765432028882898999986999928999999972888998389999960798898887444
Q 000777 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1288)
Q Consensus 382 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 461 (1288)
|.|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|++.|++|+|.++|.|+.+ .....|+.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 9789995899999---9999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred EEEECCCCCCCCH-HHHHHHHCCCC--CCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 3888478878943-09999713999--99999999999980789999829898422002899999957999999999860
Q 000777 462 IGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1288)
Q Consensus 462 i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~ 538 (1288)
++||||++.+|.. |++||+.+... ..+..++....+.. ++.+ |++........+||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 6997899827788989898999999999861-89649998059224420-287999959889684394577309
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 539 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
.+|++++|||||++||+.+.+.+++.++++. +++|+|++||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-39 Score=329.21 Aligned_cols=220 Identities=32% Similarity=0.515 Sum_probs=185.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99996999989988876543202888289899998699992899999997288899838999996079889888744438
Q 000777 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1288)
Q Consensus 384 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 463 (1288)
+++ ++..+|+. ..+ |+||++. +|+++|+||||||||||+++|+|+++|++|+|.++|.|+..+++. |++|+
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899----999-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCC-HHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8847887894-309999713999999999999999807899998298984220028999999579999999998606997
Q 000777 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1288)
Q Consensus 464 ~v~Q~~~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ 542 (1288)
||+|++.+|. .||+||+.++....+..+.++. +.+.++.+ |+..........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 252314435220155766653233677889999-----99999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 8998277889898989999999998618--9649998059224420-287999959889684394577309984689999
Q 000777 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1288)
Q Consensus 543 ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1288)
+++||||||+||+.+...+++.++++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++++.++...+.++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 06752865558879999999999999874397699981899999996999999989999999069998329988999985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-39 Score=324.51 Aligned_cols=210 Identities=22% Similarity=0.357 Sum_probs=183.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 38999788887999886431010389738969999859999888899998423799976599899505677978874113
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i 1121 (1288)
-++++||+++| +|+||||+|++||.+||+||||||||||+++|.|++ |++|+|.++|.|+...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88835787-7412199997159999999999999999800028897521143020049999899369999999999707-
Q 000777 1122 GLVSQEPV-LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVK- 1199 (1288)
Q Consensus 1122 ~~v~Qd~~-lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~- 1199 (1288)
+|++|+.. .|..++.+|+.++.......+.+.++++..++.++ ++.....||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598767-----------6768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf ------997889736677999798999999999871-89639998159046640-388999959889781593566219
Q 000777 1200 ------DPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKN-ADMIAVVKNGVIVEKGKHENLINI 1270 (1288)
Q Consensus 1200 ------~p~ILiLDEpTS~LD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aDrI~vl~~G~ive~Gt~~eLl~~ 1270 (1288)
+|+|+||||||++||+.+...+++.+++.. .++|+|+++|+++.+.. ||||++|++|++++.|+++|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-36 Score=301.02 Aligned_cols=209 Identities=24% Similarity=0.374 Sum_probs=180.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 39999699998998887654320288828989999869999289999999728889983899999607988988874443
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 462 (1288)
-++++||+++| .|+++||+|++||+++|+||||||||||+++|.|+. |++|+|.++|.++..++...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCHHHHHHHHCCCCCCC-HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88847887-894309999713999999-999999999807899998298984220028999999579999999998606-
Q 000777 463 GLVSQEPV-LFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK- 539 (1288)
Q Consensus 463 ~~v~Q~~~-lf~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~- 539 (1288)
+|++|+.. .|..++.+++.++..+.. .+.+.++++.. +++..++....+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 245121357744209887641001466899999999865-----------987676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf ------997899827788989898999999999861-89649998059224420-287999959889684394577309
Q 000777 540 ------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1288)
Q Consensus 540 ------~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1288)
+|+++||||||++||+.+...+.+.++++. .++|+|++||+++.+.. ||||++|++|++++.|++++++.+
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.4e-36 Score=299.54 Aligned_cols=192 Identities=22% Similarity=0.395 Sum_probs=159.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 38999788887999886431010389738969999859999888899998423799976599899505677978874113
Q 000777 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1288)
Q Consensus 1042 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i 1121 (1288)
.|+++||+++|+ +++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||+++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCH-HHHHHHHHCC---CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88835787741-2199997159---9999999999999998000288975211430200499998993699999999997
Q 000777 1122 GLVSQEPVLFN-DTIRANIAYG---KGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAI 1197 (1288)
Q Consensus 1122 ~~v~Qd~~lf~-gTi~eNl~~~---~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAl 1197 (1288)
+|+||+..++. -|+.+|+... .....+++++.++++..++.+ ++..+ ..||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 9995013578882899999999975488637999999998748856--------30126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEEC
Q ss_conf 0799788973667799979899999999987189639998159046640388999959
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKN 1255 (1288)
Q Consensus 1198 l~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~ 1255 (1288)
+.+|+++||||||++||++++..+++.|.+..+++++++|+|+- .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.6e-33 Score=279.06 Aligned_cols=191 Identities=23% Similarity=0.443 Sum_probs=155.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 39999699998998887654320288828989999869999289999999728889983899999607988988874443
Q 000777 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1288)
Q Consensus 383 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 462 (1288)
.++++|++|+|+ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCH-HHHHHHHCC----CCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888478878943-099997139----999999999999998078999982989842200289999995799999999986
Q 000777 463 GLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1288)
Q Consensus 463 ~~v~Q~~~lf~~-ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal 537 (1288)
+|++|++.++.. |+.+|+.+. ....+++++.++++..++. +++ +...+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~----~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLK----KKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTT----SBGGGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCC----CCCCCCCCCHHHHHHHHHHH
T ss_conf 999501357888289999999997548863799999999874885--------630----12686897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEEC
Q ss_conf 0699789982778898989899999999986189649998059224420287999959
Q 000777 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1288)
Q Consensus 538 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1288)
+.+|+++||||||++||+.+.+.+++.+.++.+++++++++|+ +.+..||.+.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 6499899986862016999999999999999867999999991-62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=5e-25 Score=212.71 Aligned_cols=317 Identities=18% Similarity=0.270 Sum_probs=280.0
Q ss_pred CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10899878323145889999999999989789999999999996312588871216679999999999999999999999
Q 000777 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 123 (1288)
..+++++++.++++. .+++..++.++.+++.+..+++++.++|...... +...+....+.++++.++..++.+++
T Consensus 2 k~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~l~~~~~~~~~~~~~~~i~~~~~ 76 (319)
T d3b60a2 2 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT----DRSVLLWMPLVVIGLMILRGITSYIS 76 (319)
T ss_dssp HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST----THHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 689999999999999-9999999999999999999999999999874468----77899999999999999764533546
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999819944461268800489999823999999998989999999999999999999896
Q 000777 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1288)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~G~ilsr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (1288)
.++..+.+.++..++|.+++++++++|+.+|++. ++|++++|+++|++.+...+.......+..+..+++.++.+++++
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (319)
T d3b60a2 77 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 155 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6544343100011000477776501011110233-322111112121210000111112001123344566888887652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999079999982408999999999999999999999
Q 000777 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1288)
Q Consensus 204 ~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1288)
|.+++++++.+|+..++.....++..+..++.++..++..+...|.+.|++++|.++.|+.+.+++.+..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 235 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 235 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 00210256689999998876666877878988764456778877762487235311101024566666531356778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999999899860586778999999999999999999899999999999999999998543
Q 000777 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1288)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~ 363 (1288)
....+.......+...+..++++++|++++.+|.++.|.+++++.+......|+..+...+..++++.++.+|+++++|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 236 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87777406401000000237999999999980997899999999999999999999999999999999999999999669
Q ss_pred CCC
Q ss_conf 987
Q 000777 364 KPE 366 (1288)
Q Consensus 364 ~~~ 366 (1288)
+||
T Consensus 316 ~~E 318 (319)
T d3b60a2 316 EQE 318 (319)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=8.9e-25 Score=210.67 Aligned_cols=319 Identities=14% Similarity=0.122 Sum_probs=273.0
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899878323145889999999999989789999999999996312588871216---67999999999999999999999
Q 000777 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETV---DKVSKVAVKFVYLGIGSGIASFL 122 (1288)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~ 122 (1288)
.+++++|.++.++ .++...++.++.+.+....+++.+.++|............ .........++++.++..++.++
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999-999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999981994446126880048999982399999999898999999999999999999989
Q 000777 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1288)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~G~ilsr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (1288)
+.++..+.+.++..++|.+++++++++|+.+|++. ++|++++|+++|++.+++.+...+...+..+..+++.++.++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012-22110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999999999999999999999999999999999999999999999907999998240899999999999999999999
Q 000777 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1288)
Q Consensus 203 ~~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1288)
+|.++++.++..|+..+......++..+..++.++..++..+.+.|.++|++++|.++.|+.+.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999989986058677899999999999999999989999999999999999999854
Q 000777 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1288)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~ 362 (1288)
..............+..+..++.+++|.+++.+|.++.|.+++++.+......|+..+...+..++.+.++.+|+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 3987
Q 000777 363 RKPE 366 (1288)
Q Consensus 363 ~~~~ 366 (1288)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=1.5e-23 Score=200.92 Aligned_cols=315 Identities=19% Similarity=0.237 Sum_probs=282.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57541420790679999999999999999999999999999855998430021499999999999999999999999999
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 786 (1288)
++++..+.+++++.+....++.++.+...+..++++..++|......+ .....++.+.++++.++..++.++..++..
T Consensus 4 ~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (319)
T d3b60a2 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSVLLWMPLVVIGLMILRGITSYISSYCIS 81 (319)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999998744687--789999999999999976453354665443
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999980895443568888358999998559999999999999999999999999999998639999
Q 000777 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1288)
Q Consensus 787 ~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 866 (1288)
+.+.+...++|.++++++++.|+++|++ +++|++++|+++|++.+...+...+...+..+..++..++.++.++|.++
T Consensus 82 ~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 159 (319)
T d3b60a2 82 WVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 159 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHCCCCCHHHHHHHHHCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 4310001100047777650101111023--33221111121212100001111120011233445668888876520021
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999989999999999999999999981179999842199999999999998999989999999
Q 000777 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1288)
Q Consensus 867 lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1288)
+++++.+|+..++.....++..+...+.++...+..+.+.|.+.|++++|+++.|+.+.+++.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (319)
T d3b60a2 160 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02566899999988766668778789887644567788777624872353111010245666665313567788888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7688999999999999999999999863974799999999999999999999999999899999999999998423678
Q 000777 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1288)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1025 (1288)
........+......++++++|++++..|.+|+|+++++..+...+..|+..+.......+++..+.+|+.+++|.++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 240 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7406401000000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=1.9e-23 Score=200.06 Aligned_cols=317 Identities=16% Similarity=0.172 Sum_probs=277.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 575414207906799999999999999999999999999998559984300214999-----999999999999999999
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW-----ALIYLALGAGSFLLSPAQ 781 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~ 781 (1288)
+++++.+.+|+++.+....++.++.+.+....+++++.++|................ ...++++.+...++.+..
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999808954435688883589999985599999999999999999999999999999986
Q 000777 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTA 861 (1288)
Q Consensus 782 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 861 (1288)
.++..+.+.+...++|.+++++++++|++||++ +++|++++|+++|++.++..+...+...+..+..++..+++++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999998556778888766540233210001--222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 39999999999999999999999999899999999999999999999811799998421999999999999989999899
Q 000777 862 SWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR 941 (1288)
Q Consensus 862 ~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1288)
+|.++++.++..|+..++.....+..++..++..+...+..+.+.|.++|+++||.|+.++++.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999768899999999999999999999986397479999999999999999999999999989999999999999842
Q 000777 942 QGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIID 1021 (1288)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~ 1021 (1288)
..+...........+..+...+++++|.+++..|.+|+|+++.+..+...+..|+..+...+.+.+++..+.+|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 3678
Q 000777 1022 RESK 1025 (1288)
Q Consensus 1022 ~~~~ 1025 (1288)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.51 E-value=7.5e-16 Score=139.12 Aligned_cols=172 Identities=14% Similarity=0.109 Sum_probs=112.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99998599998888999984237999765998995056779788741138883578774121999971599999999999
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i 1152 (1288)
+++|+||+|||||||++.++|.++|+.|.+.+++.+....+.........+.++...++..+..++...+. .....+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS-YGVNVQ-- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT-EEECHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCC--
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302-303762--
Q ss_pred HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCC
Q ss_conf 9999980002889752114302004999989936999999999970799788973667799--97989999999998718
Q 000777 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL--DAESERVVQDALDRVMK 1230 (1288)
Q Consensus 1153 ~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEpTS~L--D~~te~~I~~~l~~~~~ 1230 (1288)
...+|+|++++.++++++.++|+++++|||+... +.+....+.+.++. .
T Consensus 79 ---------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~ 129 (178)
T d1ye8a1 79 ---------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--P 129 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--T
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--C
T ss_conf ---------------------------56653201378999999740997423027773100457999999987505--7
Q ss_pred CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHH
Q ss_conf 963999815904664038899995988978159356621999378999998
Q 000777 1231 NRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 1281 (1288)
Q Consensus 1231 ~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~ 1281 (1288)
++|+|+++|+.+....+|++..+++|++++.+.. + ++..+.+.++.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~----n-rd~~~~~i~~~ 175 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE----N-RDVILEDILSL 175 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT----T-TTTHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECCC----C-HHHHHHHHHHH
T ss_conf 9789999744778986365998719999998996----4-78899999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.38 E-value=1e-14 Score=130.07 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=105.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHH
Q ss_conf 99998699992899999997288899838999996079889888744438884788789430999971399999999999
Q 000777 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~ 493 (1288)
+++|+||+|||||||++.++|.+++..|.+..++.+....+............+.+.++..+...+...+......+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ--- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302303762---
Q ss_pred HHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf 9999807899998298984220028999999579999999998606997899827788989898999999999861--89
Q 000777 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VN 571 (1288)
Q Consensus 494 ~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~ 571 (1288)
...+++|++++.++++++..+|+++++|||....+. . ..+.+.+.+.. .+
T Consensus 79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKFRDLVRQIMHDPN 130 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHHHHHHHHHHTCTT
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHHHHHHHHHHCCCC
T ss_conf --------------------------566532013789999997409974230277731004-5-799999998750579
Q ss_pred CEEEEEECCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 64999805922442028799995988968439
Q 000777 572 RTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1288)
Q Consensus 572 ~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1288)
+++++++|+.+....+|++..+.+|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=2.5e-11 Score=102.86 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHHCCEEEEE
Q ss_conf 8993699999999997----07997889736677999798999999999871-896399981590466403889999
Q 000777 1182 QLSGGQKQRVAIARAI----VKDPKILLLDEATSALDAESERVVQDALDRVM-KNRTTVVVAHRLSTIKNADMIAVV 1253 (1288)
Q Consensus 1182 ~LSgGQrQrlalARAl----l~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~aDrI~vl 1253 (1288)
.+||||+.++++|-.+ +.++|+++||||+++||+.+...+.+.|.... .+.-+|+|||++..+..||+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=3.4e-10 Score=93.77 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHH--H--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHCCEEEEE
Q ss_conf 9999579999999998--6--069978998277889898989999999998618-96499980592244202879999
Q 000777 521 TQLSGGQKQRIAIARA--I--LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVI 593 (1288)
Q Consensus 521 ~~LSgGq~qri~lARa--l--~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l 593 (1288)
..+|||||.+++||=. + +.++++++||||+++||+.....+.+.|.++.. +.-+|++||++..+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=1.6e-09 Score=88.39 Aligned_cols=75 Identities=29% Similarity=0.416 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEE--EEC
Q ss_conf 8993699999999997----0799788973667799979899999999987189639998159046640388999--959
Q 000777 1182 QLSGGQKQRVAIARAI----VKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAV--VKN 1255 (1288)
Q Consensus 1182 ~LSgGQrQrlalARAl----l~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~v--l~~ 1255 (1288)
.+|+||++.+.++..+ ..+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000777 1256 G 1256 (1288)
Q Consensus 1256 G 1256 (1288)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=9.4e-09 Score=82.20 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEE--EE
Q ss_conf 99995799999999986----0699789982778898989899999999986189649998059224420287999--95
Q 000777 521 TQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV--IH 594 (1288)
Q Consensus 521 ~~LSgGq~qri~lARal----~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~--l~ 594 (1288)
..+|+|||+...++..+ ..++.++++|||-++|++...+.+.+.+++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000777 595 RG 596 (1288)
Q Consensus 595 ~G 596 (1288)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.17 E-value=0.0066 Score=35.30 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=27.0
Q ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 65432028882898999986999928999999972
Q 000777 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 400 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+-|+++.-=+.+|+.+.|.|++|+||||++.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.88 E-value=0.0013 Score=40.89 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=24.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 8289899998699992899999997288899838999
Q 000777 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1288)
Q Consensus 409 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 445 (1288)
+..|.-+.|+|++||||||+++.|++++++..--|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.81 E-value=0.01 Score=33.83 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCC-EEEECCCCCCCHHHHH
Q ss_conf 43101038973896999985999988889999842-379997659989950567797887411-3888357877412199
Q 000777 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR-FYDPDAGHITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFNDTIR 1136 (1288)
Q Consensus 1059 ~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~g-l~~p~~G~I~idG~di~~~~~~~lR~~-i~~v~Qd~~lf~gTi~ 1136 (1288)
+.|+++..-+.||+.+.|.|++|+||||++.-++. +..-+.-.+.+-.. +.+.+....+ ++...+-+.--
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~----- 94 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQ----- 94 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGG-----
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHH-----
T ss_conf 66888746978980899994799979999999997265533663457640---1111357769999864587101-----
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEECCCC---
Q ss_conf 997159999999999999999800028897521143020049999899369999999999--707997889736677---
Q 000777 1137 ANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARA--IVKDPKILLLDEATS--- 1211 (1288)
Q Consensus 1137 eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARA--ll~~p~ILiLDEpTS--- 1211 (1288)
.+..-...++...+.++...+...-.-..-+........+. +...+. --.+|+++++|=.+-
T Consensus 95 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vvID~l~~l~~ 161 (277)
T d1cr2a_ 95 -----------SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRL--LAKLAYMRSGLGCDVIILDHISIVVS 161 (277)
T ss_dssp -----------CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHH--HHHHHHHHHTTCCSEEEEEEEEC---
T ss_pred -----------HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH--HHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf -----------01222221456778889887403521466214331068999--99865432136762599705421203
Q ss_pred --CC--CHHHHHHHHHHHHHHC--CCCEEEEEECCC----------------HH------HH-HCCEEEEEEC
Q ss_conf --99--9798999999999871--896399981590----------------46------64-0388999959
Q 000777 1212 --AL--DAESERVVQDALDRVM--KNRTTVVVAHRL----------------ST------IK-NADMIAVVKN 1255 (1288)
Q Consensus 1212 --~L--D~~te~~I~~~l~~~~--~~~TvI~IsHrl----------------~~------i~-~aDrI~vl~~ 1255 (1288)
+- +.+....+.+.++..+ .++++++++|=- +. +. .||.++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4654430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.019 Score=31.63 Aligned_cols=141 Identities=17% Similarity=0.228 Sum_probs=70.4
Q ss_pred CCEEEEEEEEECCC----CCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCEE
Q ss_conf 63999969999899----88876543202888289899998699992899999997--------2888998389999960
Q 000777 382 GDIELRDVYFSYPA----RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGIN 449 (1288)
Q Consensus 382 ~~i~~~~v~f~y~~----~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~--------g~~~~~~G~i~~~g~~ 449 (1288)
+.+++++. ++|- ..+..|-+|+++. +.+....|.|||.+||||+++.+. |.+-|.+. -.+.
T Consensus 10 ~~l~i~~~--rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a~~~--- 82 (234)
T d1wb9a2 10 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEIG--- 82 (234)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEEC---
T ss_pred CCEEEEEE--ECCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC-EECC---
T ss_conf 96899973--787797446998264057988-9953999954673136899998799999987297674176-6613---
Q ss_pred CCCCCHHHHHCCEEEECCCCCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 79889888744438884788789-43099997139999999999999998078999982989842200289999995799
Q 000777 450 LKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1288)
Q Consensus 450 ~~~~~~~~~~~~i~~v~Q~~~lf-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~ 528 (1288)
+=| .+| .-...|++.-+.... ..++.+ +...++.
T Consensus 83 ----------------~~d-~I~~~~~~~d~~~~~~S~F-~~E~~~------~~~il~~--------------------- 117 (234)
T d1wb9a2 83 ----------------PID-RIFTRVGAADDLASGRSTF-MVEMTE------TANILHN--------------------- 117 (234)
T ss_dssp ----------------CCC-EEEEEEC-----------C-HHHHHH------HHHHHHH---------------------
T ss_pred ----------------CCH-HHEEEECCCCCCCCCHHHH-HHHHHH------HHHHHHH---------------------
T ss_conf ----------------442-0234874675343653189-999999------9999974---------------------
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHC-C-CCEEEEEECCCHH
Q ss_conf 99999998606997899827788989898999999-999861-8-9649998059224
Q 000777 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQE-ALDRIM-V-NRTTVIVAHRLST 583 (1288)
Q Consensus 529 qri~lARal~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~-~-~~t~i~itH~~~~ 583 (1288)
..+..++++||+..+=++.....+.. .+..+. + ++.+++.||....
T Consensus 118 ---------~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 118 ---------ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp ---------CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ---------CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf ---------5466088532223587745666789876454320454428985246877
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.56 E-value=0.021 Score=31.31 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=64.8
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCC-CHHH
Q ss_conf 2888289899998699992899999997--------288899838999996079889888744438884788789-4309
Q 000777 406 SISISSGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSI 476 (1288)
Q Consensus 406 ~~~i~~g~~~~ivG~sGsGKSTl~~~l~--------g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf-~~ti 476 (1288)
++.+. ++.+.|.|||.+||||+++.+. |.+-|.+.. .+ +.-..+| .-..
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~-~i--------------------~~~d~I~~~~~~ 87 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEA-HL--------------------PLFDGIYTRIGA 87 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEE-EE--------------------CCCSEEEEECCC
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCE-EE--------------------EECCEEEEEECC
T ss_conf 58847-867999788734532345565899999852504613751-99--------------------401169999877
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 99971399999999999999980789999829898422002899999957999999999860699789982778898989
Q 000777 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1288)
Q Consensus 477 ~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~ts~lD~~ 556 (1288)
.|++.-+.... ..++ .++...++. ..+..++++||...+=|+.
T Consensus 88 ~d~~~~~~StF-~~el------~~~~~il~~------------------------------~~~~sLvliDE~~~gT~~~ 130 (224)
T d1ewqa2 88 SDDLAGGKSTF-MVEM------EEVALILKE------------------------------ATENSLVLLDEVGRGTSSL 130 (224)
T ss_dssp ------CCSHH-HHHH------HHHHHHHHH------------------------------CCTTEEEEEESTTTTSCHH
T ss_pred CCCCCCCCCHH-HHHH------HHHHHHHCC------------------------------CCCCCEEEECCCCCCCCHH
T ss_conf 76023783078-9867------889877502------------------------------8977278554545686233
Q ss_pred HHHHHHHHH-HHHC-CCCEEEEEECCCHHHH
Q ss_conf 899999999-9861-8964999805922442
Q 000777 557 SEKVVQEAL-DRIM-VNRTTVIVAHRLSTVR 585 (1288)
Q Consensus 557 ~~~~i~~~l-~~~~-~~~t~i~itH~~~~~~ 585 (1288)
....+..++ +.+. .+.+++++||..+...
T Consensus 131 eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 131 DGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 2002588888888623761378652023332
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.51 E-value=0.022 Score=31.08 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=35.3
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHH
Q ss_conf 7997889736677999798999999999871--8963999815904664
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVM--KNRTTVVVAHRLSTIK 1245 (1288)
Q Consensus 1199 ~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~ 1245 (1288)
.+..++|+||...+-|+.--..+..++.+.. .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.26 E-value=0.021 Score=31.21 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=72.1
Q ss_pred CCCCCEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHH
Q ss_conf 5432028-882898999986999928999999972888998389999960798898887444388847887894309999
Q 000777 401 IFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1288)
Q Consensus 401 ~l~~i~~-~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~n 479 (1288)
-|+.+=- =+++|+.+.|.|++|+|||+++.-++-...-..+ .+.|+.-+- -...+.++
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~e~--~~~~~~~~ 72 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAYEE--SRAQLLRN 72 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEESSS--CHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEECCC--CHHHHHHH
T ss_conf 798845689869849999918999999999999999987232-------------------441121267--99999999
Q ss_pred HH-CCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCC---
Q ss_conf 71-399999999999999980789999829898422002899999957999999999860-6997899827788989---
Q 000777 480 IA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-KDPRILLLDEATSALD--- 554 (1288)
Q Consensus 480 i~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~-~~~~ililDE~ts~lD--- 554 (1288)
.. ++ .+.+++.. .+............. .+...-.+.+++. .++++++.|..++...
T Consensus 73 ~~~~~---~~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~ 133 (242)
T d1tf7a2 73 AYSWG---MDFEEMER---------------QNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVS 133 (242)
T ss_dssp HHTTS---CCHHHHHH---------------TTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC
T ss_pred HHHCC---CCHHHHHH---------------CCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC
T ss_conf 99829---98699854---------------586179973000101-799999999999840885332204314304899
Q ss_pred HHHHHHHHHHHHHHC--CCCEEEEEECCC----------HHHH-HCCEEEEEEC
Q ss_conf 898999999999861--896499980592----------2442-0287999959
Q 000777 555 AESEKVVQEALDRIM--VNRTTVIVAHRL----------STVR-NADMIAVIHR 595 (1288)
Q Consensus 555 ~~~~~~i~~~l~~~~--~~~t~i~itH~~----------~~~~-~~d~i~~l~~ 595 (1288)
..........+.... .+.+++++.|.- ..+. .+|-|+.++.
T Consensus 134 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 134 NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999999999999999986983999985675125544577640464216999998
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.031 Score=29.89 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=65.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 82898999986999928999999972888998389999960798898887444388847887894309999713999999
Q 000777 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDAT 488 (1288)
Q Consensus 409 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~ 488 (1288)
+.||+.+.|.|++|+|||||+.-++--+. .|.=.+++.... ...+-|+.-+. ....+.+.+.--..+.+
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~-------~~~vl~~~~E~--~~~~~~~Rl~~~~~~~~ 94 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELP-------TGPVIYLPAED--PPTAIHHRLHALGAHLS 94 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCC-------CCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCC-------CCCEEEEECCC--HHHHHHHHHHHHHHCCC
T ss_conf 55895899992899989999999999997--699721112357-------87368985123--49999999999862368
Q ss_pred HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHH
Q ss_conf 99999999980789999829898422002899999957999999999860699789982778898-----9898999999
Q 000777 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-----DAESEKVVQE 563 (1288)
Q Consensus 489 ~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~ts~l-----D~~~~~~i~~ 563 (1288)
.+......... .... ..+.....-....+.-......+++++|+|--++.. |......+..
T Consensus 95 ~~~~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~ 160 (274)
T d1nlfa_ 95 AEERQAVADGL-----------LIQP---LIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG 160 (274)
T ss_dssp HHHHHHHHHHE-----------EECC---CTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH
T ss_pred HHHHHCCCCCC-----------EECC---CCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHH
T ss_conf 66653123332-----------3214---567420357899999988752676589628135422665232256899998
Q ss_pred HHHHHC--CCCEEEEEECCC
Q ss_conf 999861--896499980592
Q 000777 564 ALDRIM--VNRTTVIVAHRL 581 (1288)
Q Consensus 564 ~l~~~~--~~~t~i~itH~~ 581 (1288)
.+..+. .+++++++.|--
T Consensus 161 ~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 161 RMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHCCCCCEEHHHHCC
T ss_conf 87777644797540131005
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.034 Score=29.61 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=76.9
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHH
Q ss_conf 43101038973896999985999988889999842379997659989950567797887411388835787741219999
Q 000777 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1288)
Q Consensus 1059 ~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eN 1138 (1288)
.++.+ +.||+.+.|+|++|+||||++--|+--.- .|.=.+++.... ...+-|+.-|.. ...+.+.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHH
T ss_conf 98689----55895899992899989999999999997--699721112357-------873689851234--9999999
Q ss_pred HH-CCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC----
Q ss_conf 71-5999999999999999980002889752114302004999989936999999999970799788973667799----
Q 000777 1139 IA-YGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSAL---- 1213 (1288)
Q Consensus 1139 l~-~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEpTS~L---- 1213 (1288)
+. ++ .+.+.+.......... +....+... ...-....-.+ +.-..+++++++|--++..
T Consensus 86 l~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~ 149 (274)
T d1nlfa_ 86 LHALG--AHLSAEERQAVADGLL-----------IQPLIGSLP--NIMAPEWFDGL-KRAAEGRRLMVLDTLRRFHIEEE 149 (274)
T ss_dssp HHHHH--TTSCHHHHHHHHHHEE-----------ECCCTTSCC--CTTSHHHHHHH-HHHHTTCSEEEEECGGGGCCSCT
T ss_pred HHHHH--HCCCHHHHHCCCCCCE-----------ECCCCCCCC--HHHHHHHHHHH-HHHCCCCCEEECCCHHHHCCCCC
T ss_conf 99986--2368666531233323-----------214567420--35789999998-87526765896281354226652
Q ss_pred -CHHHHHHHHHHHHHHC--CCCEEEEEECCCH------------------HHH-HCCEEEEEEC
Q ss_conf -9798999999999871--8963999815904------------------664-0388999959
Q 000777 1214 -DAESERVVQDALDRVM--KNRTTVVVAHRLS------------------TIK-NADMIAVVKN 1255 (1288)
Q Consensus 1214 -D~~te~~I~~~l~~~~--~~~TvI~IsHrl~------------------~i~-~aDrI~vl~~ 1255 (1288)
|......+.+.++... .++|++++.|--. .+. .+|.++.|..
T Consensus 150 ~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r 213 (274)
T d1nlfa_ 150 NASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS 213 (274)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf 3225689999887777644797540131005554446886653356427778742558999983
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.036 Score=29.44 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCCHHH
Q ss_conf 079978897366779997989999999-99871--896399981590466
Q 000777 1198 VKDPKILLLDEATSALDAESERVVQDA-LDRVM--KNRTTVVVAHRLSTI 1244 (1288)
Q Consensus 1198 l~~p~ILiLDEpTS~LD~~te~~I~~~-l~~~~--~~~TvI~IsHrl~~i 1244 (1288)
..+..++|+||.-++-+++-...+..+ ++.+. .++.+++.||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.04 E-value=0.0014 Score=40.66 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=16.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999986999928999999972888
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
|+.+.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.0032 Score=37.89 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=15.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 898999986999928999999972888998389
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 443 (1288)
+|++++++|+||.|||||++.|.+......|+|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=6.2e-05 Score=51.56 Aligned_cols=162 Identities=10% Similarity=-0.009 Sum_probs=68.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCC-----CCCC
Q ss_conf 99998599998888999984237999765998995056779788741138883578774121999971599-----9999
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK-----GGDA 1147 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~-----~~~~ 1147 (1288)
.+.|+||+|+|||||++.+.+.+....+.+.+.+.+........+......+.|+...+.....++..... ....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred CHHHHHHHHHHHCHHHHHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998000288975-21143020049999899369999999999707997889736677999798999999999
Q 000777 1148 TEAEIQAASEMANAHKFICS-LQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALD 1226 (1288)
Q Consensus 1148 s~~~i~~al~~~~l~~~i~~-lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~ 1226 (1288)
..++....... ..+.+.. ...+.+..+.+.....+......+.+.+.++..++++++...+..-+.. ..+.+.+.
T Consensus 83 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 158 (189)
T d2i3ba1 83 DLTSFEQLALP--VLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIR 158 (189)
T ss_dssp CHHHHHTTTTT--TTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHH
T ss_pred CHHHHHHHHHH--HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH--HHHHHHHH
T ss_conf 37777778899--999998876218970686143333053599999999985468659996155577556--99999986
Q ss_pred HHCCCCEEEEEEC
Q ss_conf 8718963999815
Q 000777 1227 RVMKNRTTVVVAH 1239 (1288)
Q Consensus 1227 ~~~~~~TvI~IsH 1239 (1288)
+ .++.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.01 E-value=0.038 Score=29.18 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=72.5
Q ss_pred CCCCEEE-EEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHH
Q ss_conf 3101038-9738969999859999888899998423-7999765998995056779788741138883578774121999
Q 000777 1060 VFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRF-YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1288)
Q Consensus 1060 vL~~isl-~I~~Ge~vaIvG~SGSGKSTL~~lL~gl-~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~e 1137 (1288)
.|+++=- -+++|..+.|.|++||||||++.-++.- .....-.+++.- +.+...+ ++
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~------------------~~ 71 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQL------------------LR 71 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHH------------------HH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEC----CCCHHHH------------------HH
T ss_conf 7988456898698499999189999999999999999872324411212----6799999------------------99
Q ss_pred HHH-CCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCH
Q ss_conf 971-5999999999999999980002889752114302004999989936999999999970-79978897366779997
Q 000777 1138 NIA-YGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIV-KDPKILLLDEATSALDA 1215 (1288)
Q Consensus 1138 Nl~-~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll-~~p~ILiLDEpTS~LD~ 1215 (1288)
+.. ++ ...+++.. .+....+......... +...-.+.+++- .++++++.|-.++-...
T Consensus 72 ~~~~~~----~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~ 131 (242)
T d1tf7a2 72 NAYSWG----MDFEEMER---------------QNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARG 131 (242)
T ss_dssp HHHTTS----CCHHHHHH---------------TTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred HHHHCC----CCHHHHHH---------------CCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCC
T ss_conf 999829----98699854---------------5861799730001017-999999999998408853322043143048
Q ss_pred HHHHHHHH---HHHHHC--CCCEEEEEECCC----------HHHH-HCCEEEEEEC
Q ss_conf 98999999---999871--896399981590----------4664-0388999959
Q 000777 1216 ESERVVQD---ALDRVM--KNRTTVVVAHRL----------STIK-NADMIAVVKN 1255 (1288)
Q Consensus 1216 ~te~~I~~---~l~~~~--~~~TvI~IsHrl----------~~i~-~aDrI~vl~~ 1255 (1288)
.+...+.+ .+.... .++|++++.|.- ..+. .+|-|+.++.
T Consensus 132 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 132 VSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99999999999999999986983999985675125544577640464216999998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.87 E-value=0.044 Score=28.74 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=19.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 82898999986999928999999972
Q 000777 409 ISSGTTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 409 i~~g~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
-++-+.+.++|++||||||+.+-++.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99998999989999989999999997
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.029 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 882898999986999928999999972888
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
.+++..-+.+.||+|+|||++++.++..+.
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 999888678668998882289999999829
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.84 E-value=0.0041 Score=36.94 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8969999859999888899998423799976599
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~ 1103 (1288)
+|++.+++|+||.|||||++.|.+-..-..|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0063 Score=35.48 Aligned_cols=48 Identities=15% Similarity=0.345 Sum_probs=34.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHH
Q ss_conf 99998699992899999997288899838999996079889888744438884788789430999
Q 000777 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ 478 (1288)
+++|.|++||||||+.+.|...+.-..+. ..+..+++|.+......++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.052 Score=28.11 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=25.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 882898999986999928999999972888
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
.+++..-+.+.||+|+|||++++.+++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.56 E-value=0.0038 Score=37.28 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8989999869999289999999728889983899999
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 447 (1288)
.|+.+.|+|++||||||+.+.|...+.. --+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.55 E-value=0.011 Score=33.47 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=11.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
.+.|+|++||||||+++.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.44 E-value=0.0047 Score=36.50 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=20.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289899998699992899999997288
Q 000777 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 410 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++|-++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0061 Score=35.60 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999928999999972888
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
+|..+.|+||||+||+||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.0034 Score=37.59 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999972888
Q 000777 414 TAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
.++|+|++|||||||++.|.+.+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.32 E-value=0.0058 Score=35.77 Aligned_cols=28 Identities=43% Similarity=0.472 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9699998599998888999984237999
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFYDPD 1098 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~~p~ 1098 (1288)
|+.+.|+||||||||||++.|..-++..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.13 E-value=0.014 Score=32.79 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869999289999999728
Q 000777 413 TTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
=+++++|++|+|||||++.|.|.
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 88999999999999999999778
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.10 E-value=0.019 Score=31.61 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=33.2
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 03897389699998599998888999984237999765998
Q 000777 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1288)
Q Consensus 1064 isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~i 1104 (1288)
+...++.|..+.|+|++||||||+++.|+++.+|..=-|.|
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 99999837888999403566257899986530145623311
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.03 E-value=0.0078 Score=34.75 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999972888
Q 000777 414 TAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
+++|.|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.085 Score=26.43 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 997899827788989898999999999861896499980592244
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1288)
Q Consensus 540 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 584 (1288)
+..++++||+-. +.......+.+.+.........|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.90 E-value=0.011 Score=33.66 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289899998699992899999997288
Q 000777 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 410 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
|+|-.++|.|++||||||+.+.|...+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.85 E-value=0.011 Score=33.40 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999986999928999999972888
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
.+.+.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.83 E-value=0.089 Score=26.26 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=51.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 38969999859999888899998423799976599899505677978874113888357877412199997159999999
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDAT 1148 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s 1148 (1288)
++-+.+-++|++||||||+++-++.. .|.+.++.-+ ++ +
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D~--------~~-----------------------------~ 50 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRDT--------LG-----------------------------S 50 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHHH--------HC-----------------------------S
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECHHH--------HH-----------------------------H
T ss_conf 99989999899999899999999976----5978976077--------77-----------------------------8
Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 999999999800028897521143020049999899369999-99999970799788973
Q 000777 1149 EAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQR-VAIARAIVKDPKILLLD 1207 (1288)
Q Consensus 1149 ~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQr-lalARAll~~p~ILiLD 1207 (1288)
.+++...++ ..|..|.+..+. ..+++-.+|++ +.+|+..=-+..++.+|
T Consensus 51 ~~~~~~~~~--------~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 51 WQRCVSSCQ--------AALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHHH--------HHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHHH--------HHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 889999999--------999779995551--76799999999999998558887999948
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.089 Score=26.24 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=28.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 9738969999859999888899998423799976599899505
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di 1109 (1288)
.+++...+-+.||+|+|||++++.+++.+... -+.++..++
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 99988867866899888228999999982998--799886994
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.81 E-value=0.09 Score=26.23 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=19.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73896999985999988889999842379
Q 000777 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1068 I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
+++...+-+.||+|+|||++++.+++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.78 E-value=0.013 Score=32.88 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8969999859999888899998423799976599899
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG 1106 (1288)
.|+.+.|+|++||||||+++.|.+.+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.01 Score=33.88 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC
Q ss_conf 9999869999289999999728889983899999607988988874443888478878
Q 000777 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 471 (1288)
++||.|++||||||+.+.|...+....-. .....+.++++|.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~--------------~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--------------YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--------------GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC--------------CCCCCEEEEECCCCC
T ss_conf 99998999787999999999996410134--------------578843999346532
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.70 E-value=0.0034 Score=37.67 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8989999869999289999999728889983899
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~ 444 (1288)
+|++++++|+||.|||||++.|.+......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.66 E-value=0.0082 Score=34.55 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699992899999997288
Q 000777 413 TTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+.++|+|++|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.65 E-value=0.0086 Score=34.38 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999972888
Q 000777 414 TAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
.++|+|.+|||||||+.-|.+.+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999980999989999999999998
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.56 E-value=0.0042 Score=36.86 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89699998599998888999984237999765998
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~i 1104 (1288)
+|++..++|+||.|||||++.|.+-..-..|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=0.014 Score=32.71 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=33.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE--E----------EECCEECCCCCHHHHHCC
Q ss_conf 89699998599998888999984237999765--9----------989950567797887411
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGH--I----------TLDGVEIQKLQLKWLRQQ 1120 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~--I----------~idG~di~~~~~~~lR~~ 1120 (1288)
.|..+.|+|||||||+||.+.|+.-++...-. | ..||+|..-++.+.+.+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHH
T ss_conf 980999999999999999999986398668427888763678865543212334328999987
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.46 E-value=0.0069 Score=35.14 Aligned_cols=40 Identities=33% Similarity=0.315 Sum_probs=26.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECC
Q ss_conf 8828989999869999289999999728889--983899999
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDG 447 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g 447 (1288)
.-++|.++.+.|.+||||||+.+.|...+.. ..-.+.+||
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg 61 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 61 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 589986999989999998999999998877742750899753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.45 E-value=0.11 Score=25.61 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=65.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCH
Q ss_conf 28989999869999289999999728889983899999607988988874443888478878943099997139999999
Q 000777 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489 (1288)
Q Consensus 410 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~ 489 (1288)
.++..+.+.||+||||||.+..+..........| -.+. ||.-+ ..+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i-------------------~tiE-dPiE~----------~~~~~-- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI-------------------LTVE-DPIEF----------DIDGI-- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE-------------------EEEE-SSCCS----------CCSSS--
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEE-------------------EEEC-CCCCC----------CCCCC--
T ss_conf 4105489876787774477999866625787469-------------------9962-67434----------56788--
Q ss_pred HHHHHHHHHCCHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999980789999829898422002-899999957999999999860699789982778898989899999999986
Q 000777 490 EEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568 (1288)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~~~~g~~t~v~-~~g~~LSgGq~qri~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~ 568 (1288)
.+..+. ..+.+ ---++..++-.+|++++..|.. |.++.....++-
T Consensus 204 ----------------------~q~~v~~~~~~~------~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa--- 249 (401)
T d1p9ra_ 204 ----------------------GQTQVNPRVDMT------FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS--- 249 (401)
T ss_dssp ----------------------EEEECBGGGTBC------HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH---
T ss_pred ----------------------CEEEECCCCCCC------HHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHH---
T ss_conf ----------------------702655876779------9999999984138889845768---759999999997---
Q ss_pred CCCCEEEEEECCCHHHHHCCE
Q ss_conf 189649998059224420287
Q 000777 569 MVNRTTVIVAHRLSTVRNADM 589 (1288)
Q Consensus 569 ~~~~t~i~itH~~~~~~~~d~ 589 (1288)
..|+.|+..-|--+...-.+|
T Consensus 250 ~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 250 LTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HTTCEEEEEECCSSSHHHHHH
T ss_pred HCCCEEEEEECCCCHHHHHHH
T ss_conf 249858998336766766543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.012 Score=33.14 Aligned_cols=27 Identities=37% Similarity=0.412 Sum_probs=18.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289899998699992899999997288
Q 000777 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 410 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
..+.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.43 E-value=0.012 Score=33.18 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.38 E-value=0.016 Score=32.23 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999869999289999999728889983
Q 000777 414 TAALVGQSGSGKSTVISLIERFYDPQAG 441 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G 441 (1288)
.++|+|++|+|||||++.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.32 E-value=0.017 Score=32.03 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 8999986999928999999972888998389999
Q 000777 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 446 (1288)
+.+.++|++||||||+++.|.... .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEEC
T ss_conf 799998999999999999999957---9979960
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.0066 Score=35.31 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699992899999997288
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+|-++.++|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.022 Score=31.14 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=35.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHH
Q ss_conf 999985999988889999842379997659989950567797887411388835787741219999
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eN 1138 (1288)
.|||.|++||||||+.+.|..+..-..+ ..++..|++|.+..+...++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~ 130 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKE 130 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHH
T ss_conf 9999689999876899999999730468-----------------996599952156898458888
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.04 E-value=0.018 Score=31.82 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.++|+|++|+|||||++.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.03 E-value=0.018 Score=31.91 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 89999869999289999999728889983899999
Q 000777 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 447 (1288)
..+.|+|++||||||+++.|...+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.02 E-value=0.018 Score=31.78 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3896999985999988889999842379
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
++|-.|.|+|.+||||||+.+.|..-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.022 Score=31.17 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=11.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999986999928999999972
Q 000777 413 TTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+.+.|+||||+||+||++.|..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
T ss_conf 7199999899999999999997
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.092 Score=26.15 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++|.|+.|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.95 E-value=0.017 Score=32.08 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 89999869999289999999728889
Q 000777 413 TTAALVGQSGSGKSTVISLIERFYDP 438 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 438 (1288)
++++|.|++||||||+++.|...+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.00014 Score=48.72 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=27.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 89999869999289999999728889983899999
Q 000777 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 447 (1288)
+.+.|+||+|+|||||++.+.+.+....+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 69999889997199999999999997799799998
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.011 Score=33.50 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998599998888999984237999
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPD 1098 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~ 1098 (1288)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.83 E-value=0.027 Score=30.46 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=21.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289899998699992899999997288
Q 000777 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 410 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
|+|-.+.|+||.||||||+.+.|+..+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.81 E-value=0.017 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.74 E-value=0.028 Score=30.30 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=25.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3896999985999988889999842379
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
++|-.+.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.019 Score=31.57 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699992899999997288
Q 000777 413 TTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+.+.++|++||||||+.+.|+..+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.022 Score=31.20 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999997288
Q 000777 415 AALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 415 ~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+.|+|||||||+||.+.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.65 E-value=0.024 Score=30.75 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=17.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699992899999997288
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
...+.|+||.||||||+.+.|+..|
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9489998999998899999999997
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.57 E-value=0.024 Score=30.77 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999888899998423799
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p 1097 (1288)
.|||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.56 E-value=0.053 Score=28.06 Aligned_cols=42 Identities=29% Similarity=0.390 Sum_probs=28.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCC
Q ss_conf 9699998599998888999984237------------99976599899505677
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFY------------DPDAGHITLDGVEIQKL 1112 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~------------~p~~G~I~idG~di~~~ 1112 (1288)
+=+|||+|++|+|||||++.|+|-- .+..|.+.++|.++..+
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEE
T ss_conf 888999999999999999999778762242256543332001220499234652
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.45 E-value=0.03 Score=30.06 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999985999988889999842379
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
.+.|.|.|++||||||+++.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.025 Score=30.72 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389699998599998888999984237
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
+.+..+.|+|++||||||+++.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.41 E-value=0.16 Score=24.19 Aligned_cols=109 Identities=16% Similarity=0.326 Sum_probs=52.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 82898999986999928999999972888998389999960798898887444388847887894309999713999999
Q 000777 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDAT 488 (1288)
Q Consensus 409 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~ 488 (1288)
-.+...+++|||+|+||||.+--|+..+. ..| ++++++.=|.+ +.. -
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~------------------~kV~lit~Dt~-------------R~g-A 54 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG------------------KSVVLAAADTF-------------RAA-A 54 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT------------------CCEEEEEECTT-------------CHH-H
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CCEEEEEECCC-------------CCC-H
T ss_conf 99998999989999988999999999999-779------------------90699960133-------------420-4
Q ss_pred HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHHHH
Q ss_conf 99999999980789999829898422002899999957999999999860699789982778-8989898999999
Q 000777 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT-SALDAESEKVVQE 563 (1288)
Q Consensus 489 ~~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~t-s~lD~~~~~~i~~ 563 (1288)
.|++.. +-+.+ |........+..+. .-.+-+.+.+..++.++++.|=|= +.-|.+-...+..
T Consensus 55 ~eQL~~---------~a~~l--~i~~~~~~~~~d~~--~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~ 117 (213)
T d1vmaa2 55 IEQLKI---------WGERV--GATVISHSEGADPA--AVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRK 117 (213)
T ss_dssp HHHHHH---------HHHHH--TCEEECCSTTCCHH--HHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHH---------HHHHC--CCCCCCCCCCCCHH--HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 678887---------76432--76410367777689--98788789998769998998245533016888899888
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.35 E-value=0.025 Score=30.66 Aligned_cols=25 Identities=44% Similarity=0.684 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999985999988889999842379
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
++|+|+|++|||||||++.|...+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.31 E-value=0.037 Score=29.35 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCCCEEEEE-----------ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 310103897-----------3896999985999988889999842379997659
Q 000777 1060 VFRDLNLKI-----------RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1288)
Q Consensus 1060 vL~~isl~I-----------~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I 1102 (1288)
-+.++.+.- .++-.+-++||+||||||.+..++...+.+..+|
T Consensus 136 ~l~~LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i 189 (401)
T d1p9ra_ 136 DLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 189 (401)
T ss_dssp CGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 144301357778999999864105489876787774477999866625787469
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.23 E-value=0.04 Score=29.04 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.++++|+.|||||||++.|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.14 E-value=0.035 Score=29.47 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.13 E-value=0.024 Score=30.76 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999997288
Q 000777 415 AALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 415 ~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++|+|||||||+||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.11 E-value=0.031 Score=29.97 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=16.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699992899999997288
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
-..+.|+||.||||||+.+.|+..|
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.04 E-value=0.03 Score=29.99 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
.++++|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.025 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999928999999972888
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
+++.++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.98 E-value=0.086 Score=26.36 Aligned_cols=95 Identities=22% Similarity=0.378 Sum_probs=51.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCHH
Q ss_conf 89899998699992899999997288899838999996079889888744438884788789430999971399999999
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~ 490 (1288)
....+++|||+|+||||.+--|+..+. ..| ++++++.=|.+- . ...+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~R-------------~-ga~e 57 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------------FKVGLVGADVYR-------------P-AALE 57 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT------------------CCEEEEECCCSS-------------H-HHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CCEEEEEEECCC-------------C-CHHH
T ss_conf 998999989999998999999999999-779------------------936999720235-------------5-1567
Q ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999999980789999829898422002899999957999999999860699789982778898
Q 000777 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1288)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~ts~l 553 (1288)
++..-++ .+ |......+....+.. -.+=++..+...+.++++.| |++.
T Consensus 58 QL~~~a~---------~l--~v~~~~~~~~~~~~~--~~~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 58 QLQQLGQ---------QI--GVPVYGEPGEKDVVG--IAKRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HHHHHHH---------HH--TCCEECCTTCCCHHH--HHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred HHHHHCC---------CC--CCCEEECCCCHHHHH--HHHHHHHHHHCCCCCEEEEE--CCCC
T ss_conf 8987401---------46--842230244102447--89999987402677369985--3776
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.95 E-value=0.046 Score=28.57 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=27.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 3896999985999988889999842379997659989
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1105 (1288)
++|=++.|+||.||||||+.+.|+.-| |-..++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~ 33 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA 33 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 996389998999998899999999986----985775
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.95 E-value=0.038 Score=29.21 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+++++|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.037 Score=29.28 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999985999988889999842379
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
...+.|+||||+||+||.+.|+..++
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.85 E-value=0.025 Score=30.63 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
-+||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.04 Score=29.06 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCH
Q ss_conf 999985999988889999842379997659989950567797887411388835787741
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 1132 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~ 1132 (1288)
.|||.|++||||||+.+.|...+.-.. .+ .-...+.++++|.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~-------~~-------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE-------VD-------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG-------SC-------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC-------CC-------CCCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101-------34-------57884399934653224
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.74 E-value=0.037 Score=29.28 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
++||+|++||||||+++.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.11 Score=25.37 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.042 Score=28.89 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 989999869999289999999728
Q 000777 412 GTTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
|=+++++|++|+|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.61 E-value=0.044 Score=28.69 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999972888
Q 000777 414 TAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
.++|-||+||||||..+.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.60 E-value=0.035 Score=29.55 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=26.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 6999985999988889999842379997659989950
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~d 1108 (1288)
..+.|+|++||||||+++.|.+.+. +...++|-+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~ 36 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDI 36 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEHHH
T ss_conf 0899989999998999999999809---988983078
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.49 E-value=0.045 Score=28.64 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999972888
Q 000777 414 TAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
.++++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.47 E-value=0.044 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.44 E-value=0.078 Score=26.70 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=52.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCHH
Q ss_conf 89899998699992899999997288899838999996079889888744438884788789430999971399999999
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~ 490 (1288)
++..+++|||+|+||||.+--|+..+. ..| ++++++.=|.+ +. ..-+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g------------------~kV~lit~Dt~-------------R~-gA~e 51 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG------------------KKVMFCAGDTF-------------RA-AGGT 51 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT------------------CCEEEECCCCS-------------ST-THHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CCEEEEEECCC-------------CC-CCHH
T ss_conf 977999989999988999999999999-779------------------90799981366-------------65-4026
Q ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHHHH
Q ss_conf 9999999807899998298984220028999999579999999998606997899827788-989898999999
Q 000777 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQE 563 (1288)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~ts-~lD~~~~~~i~~ 563 (1288)
++..-++.. |......+.+..+ .+.-+=++..+-.++.++++.|=|-- ..|.+....+.+
T Consensus 52 QL~~~a~~l-----------~i~~~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~ 112 (207)
T d1okkd2 52 QLSEWGKRL-----------SIPVIQGPEGTDP--AALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKK 112 (207)
T ss_dssp HHHHHHHHH-----------TCCEECCCTTCCH--HHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHH
T ss_pred HHHHCCCCC-----------CCEEEECCCCCCH--HHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 676405456-----------8238961677427--889999899999879999971752223112778888777
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.024 Score=30.77 Aligned_cols=27 Identities=44% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896999985999988889999842379
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
+|-+|.|+|++||||||+++.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.07 Score=27.07 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88289899998699992899999997288
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
-+++|+.+.|.||+||||||++.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.047 Score=28.45 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999985999988889999842379
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
..+.|+|++||||||+.+.|+..+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.32 E-value=0.031 Score=29.94 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=26.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCE
Q ss_conf 6999985999988889999842379997---65998995
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGV 1107 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~~p~~---G~I~idG~ 1107 (1288)
..++|+|++|||||||+.-|.+.+.... |.|.-|+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.22 Score=23.07 Aligned_cols=111 Identities=20% Similarity=0.302 Sum_probs=54.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCH
Q ss_conf 28989999869999289999999728889983899999607988988874443888478878943099997139999999
Q 000777 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489 (1288)
Q Consensus 410 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~ 489 (1288)
++-..+++|||+|+||||.+--|+..+. ..| ++++++.=|.+ +. .-.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~-------------R~-gA~ 53 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFE-QQG------------------KSVMLAAGDTF-------------RA-AAV 53 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHH-TTT------------------CCEEEECCCTT-------------CH-HHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CCEEEEECCCC-------------CC-CCH
T ss_conf 9997999989999998999999999999-779------------------94799823213-------------66-612
Q ss_pred HHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHHHHHHH
Q ss_conf 9999999980789999829898422002899999957999999999860699789982778-8989898999999999
Q 000777 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT-SALDAESEKVVQEALD 566 (1288)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~t-s~lD~~~~~~i~~~l~ 566 (1288)
|++.. +-+.+ |........+..+..=-+.- +.-|-.++-++++.|=|- +..|.....++.+..+
T Consensus 54 eQL~~---------~a~~l--~v~~~~~~~~~d~~~~l~~~--~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~ 118 (211)
T d2qy9a2 54 EQLQV---------WGQRN--NIPVIAQHTGADSASVIFDA--IQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVR 118 (211)
T ss_dssp HHHHH---------HHHHT--TCCEECCSTTCCHHHHHHHH--HHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHH---------HHHHC--CCCCCCCCCCCCHHHHHHHH--HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 04555---------43433--88621135687799999999--99998769988996568876320778999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.25 E-value=0.052 Score=28.13 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++++|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.22 E-value=0.041 Score=28.93 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
++.|+|++||||||+.+.|+.-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.21 E-value=0.051 Score=28.23 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
++||+|..||||||+++.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.19 E-value=0.046 Score=28.59 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.18 E-value=0.045 Score=28.65 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=18.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699992899999997288
Q 000777 413 TTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+.+.++|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.17 E-value=0.03 Score=30.00 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999728
Q 000777 415 AALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 415 ~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.13 E-value=0.045 Score=28.62 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.12 E-value=0.043 Score=28.76 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999988889999842379
Q 000777 1074 VALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1074 vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
|.|+|||||||+||++.|+.-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.12 E-value=0.038 Score=29.19 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9699998599998888999984237999765
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~ 1101 (1288)
...|+|.|++||||||+++.|...+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.12 E-value=0.051 Score=28.20 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 896999985999988889999842379997659989
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1105 (1288)
+...|.|+||.||||||+++.|+.-| |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.11 E-value=0.039 Score=29.09 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=18.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8289899998699992899999997288
Q 000777 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 409 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++.+.++.|+||.||||||+.+.|+..|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.09 E-value=0.23 Score=22.89 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896999985999988889999842379
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
+...+++|||+|+||||.+-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.061 Score=27.56 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2898999986999928999999972888
Q 000777 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 410 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
++|.+++|.|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.04 E-value=0.054 Score=28.02 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
++++||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.97 E-value=0.052 Score=28.13 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699992899999997288
Q 000777 413 TTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
-+++|-|..||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.90 E-value=0.042 Score=28.89 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699992899999997288
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+.-++++||++|+|||||++.+.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.063 Score=27.48 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++.|+||.||||||..+.|+..|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=0.091 Score=26.19 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97389699998599998888999984237
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
-+++|+.+.|.|++||||||++.-++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.035 Score=29.50 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8989999869999289999999728889
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 438 (1288)
..-.++|+|+.|+|||||+..|.+.+..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8328974389999899999999999975
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.81 E-value=0.1 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=20.9
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 543202888289899998699992899999997
Q 000777 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1288)
Q Consensus 401 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~ 433 (1288)
.++...+.+ .|.-+.+.|+||+||||+...+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 178999999-99999998189999899999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.73 E-value=0.061 Score=27.57 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
++.++|++|+|||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.71 E-value=0.031 Score=29.90 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=12.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++++|++++|||||++.|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.68 E-value=0.089 Score=26.25 Aligned_cols=42 Identities=10% Similarity=0.206 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 6997899827788989898999999999861896499980592244
Q 000777 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1288)
Q Consensus 539 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 584 (1288)
.+.+++|+|-.. .+ .+.+..+.+.+++. ++-+++|-...+..
T Consensus 134 ~~~d~~l~~~~~-~~-~~~d~~l~~~l~~~--~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 134 YEYDFFIIISAT-RF-KKNDIDIAKAISMM--KKEFYFVRTKVDSD 175 (400)
T ss_dssp GGCSEEEEEESS-CC-CHHHHHHHHHHHHT--TCEEEEEECCHHHH
T ss_pred HCCEEEEEECCC-CC-CHHHHHHHHHHHHC--CCCEEEEEECCCCC
T ss_conf 226599996588-88-78899999999976--99879997086321
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.67 E-value=0.032 Score=29.84 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCC
Q ss_conf 999986999928999999972888998389999960798898887444388847887
Q 000777 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 470 (1288)
++||.|+|||||||+.+.|...+... | -...++.||.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCC
T ss_conf 99998999780999999999997156-9------------------97699947778
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.62 E-value=0.068 Score=27.19 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+.|+||.||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.62 E-value=0.067 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999972888
Q 000777 414 TAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
+++|.||.||||+|+.+.|+.-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.60 E-value=0.18 Score=23.85 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999986999928999999972-----88899838
Q 000777 414 TAALVGQSGSGKSTVISLIER-----FYDPQAGE 442 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g-----~~~~~~G~ 442 (1288)
+++++|..|+|||||++-+.. .|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999998995889999999729998654775343
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.56 E-value=0.065 Score=27.36 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
.++|+|++|+|||||++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.54 E-value=0.065 Score=27.34 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999988889999842379
Q 000777 1074 VALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1074 vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
+.|+|||||||+||++.|+..++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.53 E-value=0.05 Score=28.26 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++.|.||.||||||+.+.|+.-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.53 E-value=0.061 Score=27.55 Aligned_cols=35 Identities=11% Similarity=0.369 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8989999869999289999999728889983899999
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 447 (1288)
|+.-+.++||+|+|||.|.+.+++.+.. --+.+++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCC
T ss_conf 9866999899998888999998621322--1000344
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.15 Score=24.39 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=15.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999986999928999999972
Q 000777 413 TTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
-+++++|++|+|||||++-+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=0.067 Score=27.24 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.45 E-value=0.27 Score=22.38 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=18.8
Q ss_pred ECCCEEEEECCCCCCHHHHH-HHHHCC
Q ss_conf 38969999859999888899-998423
Q 000777 1069 RAGKTVALVGESGSGKSTVV-SLLQRF 1094 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~-~lL~gl 1094 (1288)
++...+++|||+|+||||.+ |+-.++
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=91.34 E-value=0.076 Score=26.81 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++.|+||.||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.17 Score=23.97 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 999986999928999999972-----888998389
Q 000777 414 TAALVGQSGSGKSTVISLIER-----FYDPQAGEV 443 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g-----~~~~~~G~i 443 (1288)
+++++|.+|+|||||++-+.+ .+.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.25 E-value=0.082 Score=26.53 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999988889999842379
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
.++|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.21 E-value=0.077 Score=26.78 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+||+|+..+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.01 E-value=0.093 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8989999869999289999999728889
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 438 (1288)
+|.++++-|..||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.095 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699992899999997288
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+|.++++-|+.||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.99 E-value=0.056 Score=27.85 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999928999999972888
Q 000777 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
+++.|.|++||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.94 E-value=0.093 Score=26.12 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
+|+++|++|+|||||++.|.|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.91 E-value=0.3 Score=22.00 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=17.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699992899999997288
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+..+.++||+|+||||.+.-|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.24 Score=22.81 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
++.++|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.83 E-value=0.063 Score=27.46 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999997288
Q 000777 415 AALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 415 ~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+.++|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.73 E-value=0.13 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+++++|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.69 E-value=0.098 Score=25.92 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
+|+++|++|+|||||++.|+|--
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.65 E-value=0.046 Score=28.57 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=59.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf 89699998599998888999984237999765998995056779788741138883578774121999971599999999
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE 1149 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~ 1149 (1288)
+-.++.|+||.||||||+++.|+.-| |-+.|+.-| -+|+. +.+...-....+++-..-+ ....+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~---~~~~~~~~~~~i~~~~~~~--~~~~~ 70 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAE---QGRAGSQYGELIKNCIKEG--QIVPQ 70 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHH---HHSTTCSCHHHHHHHHHTT--CCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHH---HHHCCCHHHHHHHHHHHCC--CCCCC
T ss_conf 97289998999999899999999985----990885358-------99988---6201017889988764000--02320
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999998000288975211430200499998993699999999997079978897366
Q 000777 1150 AEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209 (1288)
Q Consensus 1150 ~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEp 1209 (1288)
..+.......-.... ...-+..+-++ .-....|...+.+.+.....++.||=+
T Consensus 71 ~~~~~~~~~~~~~~~----~~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 71 EITLALLRNAISDNV----KANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHH----HTTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHH----CCCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 367899999988640----03777535404---313689999999861545543125798
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.65 E-value=0.082 Score=26.54 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.|+|+|++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.053 Score=28.04 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896999985999988889999842379
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.51 E-value=0.061 Score=27.58 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=64.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 73896999985999988889999842379997659989950567797887411388835787741219999715999999
Q 000777 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDA 1147 (1288)
Q Consensus 1068 I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~ 1147 (1288)
++++..+.|.||.||||||+++.|+.-| |-..++.-++ +|..+ ... ......+.+.+.-+ ...
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~l-------lr~~~---~~~-~~~~~~~~~~~~~~--~~~ 67 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGDL-------LRAEV---SSG-SARGKMLSEIMEKG--QLV 67 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHHH-------HHHHH---HHT-CHHHHHHHHHHTTT--CCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCHH-------HHHHH---HHH-HHHHHHHHHHHHHC--CCC
T ss_conf 4678289998999998799999999986----9846833478-------99999---876-76514567777631--377
Q ss_pred CHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 999999999980002889752114302004999989936999999999970799788973667
Q 000777 1148 TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210 (1288)
Q Consensus 1148 s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEpT 1210 (1288)
+++.+...++.. +...+......+-+ .+..-..|--.+.+.+.....++.++.+.
T Consensus 68 ~~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~~ 122 (194)
T d3adka_ 68 PLETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAGP 122 (194)
T ss_dssp CHHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred CHHEEEEEHHHH-----HHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCCH
T ss_conf 622244102456-----64032235660243---11101578999999837752000033312
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.50 E-value=0.093 Score=26.09 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=13.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++.++||.||||||..+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.44 E-value=0.11 Score=25.37 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.40 E-value=0.088 Score=26.29 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999859999888899998423799976599899
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG 1106 (1288)
+.+.++|++||||||+.+.|+.-+ |--++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH----CCCEEEH
T ss_conf 988998899998899999999994----9987865
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.38 E-value=0.11 Score=25.64 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999888899998423799
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p 1097 (1288)
+++|-||+||||||++++|+.-|.-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.37 E-value=0.33 Score=21.66 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=32.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 997889736677999798999999999871896399981590466
Q 000777 1200 DPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTI 1244 (1288)
Q Consensus 1200 ~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i 1244 (1288)
+.+++++||+-. +.......+.+.+.+....+..|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.37 E-value=0.098 Score=25.90 Aligned_cols=34 Identities=35% Similarity=0.363 Sum_probs=26.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 989999869999289999999728889983899999
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 447 (1288)
..-+.+.||.||||||+++.|++.+.. +-+.+++
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 979998897998899999999998651--5489832
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.34 E-value=0.1 Score=25.72 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
++||+|..||||||.++.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.25 E-value=0.27 Score=22.40 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHH-CC----CCCCCC
Q ss_conf 99998699992899999997-28----889983
Q 000777 414 TAALVGQSGSGKSTVISLIE-RF----YDPQAG 441 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~-g~----~~~~~G 441 (1288)
+++++|..|+|||||++-+. +. +.|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999198999999972999865465301
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.23 E-value=0.0043 Score=36.83 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 543202888289899998699992899999997288
Q 000777 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 401 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+++.++.+.+| ++.|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.14 E-value=0.14 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=22.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 882898999986999928999999972
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
=+++|+.+.|.|++||||||++.-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.11 E-value=0.18 Score=23.76 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 543202888289899998699992899999997
Q 000777 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1288)
Q Consensus 401 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~ 433 (1288)
.++...+.+ .|.-+.++|+||+||||+...+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 289999999-99999998089999899999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.004 Score=37.06 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=28.0
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 31010389738969999859999888899998423
Q 000777 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1060 vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.+++.++.+.+| .+.|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.04 E-value=0.11 Score=25.50 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.12 Score=25.16 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99998599998888999984237999765998995056779788741138883578774121999971599999999999
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i 1152 (1288)
++.|.||.||||||.++.|+.-| |-..++-- +-+|..+ .++...+...+.+.+.-+ ....|+.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g-------~llR~~~---~~~~~~~~~~~~~~~~~~--~~v~d~~~ 66 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAG-------ELLRDER---KNPDSQYGELIEKYIKEG--KIVPVEIT 66 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HCTTSTTHHHHHHHHHTT--CCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECHH-------HHHHHHH---HHHHHHHHHHHHHHHHCC--CCCCCCHH
T ss_conf 99997999999899999999986----99267688-------9999988---762046899999997069--72113403
Q ss_pred HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCE-EEEECC
Q ss_conf 999998000288975211430200499998993699999999997079--978-897366
Q 000777 1153 QAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKD--PKI-LLLDEA 1209 (1288)
Q Consensus 1153 ~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~--p~I-LiLDEp 1209 (1288)
...+... +........ .-+..+.+ |.-. .+.|...+.+.+-.. +.+ +++|-+
T Consensus 67 ~~~~~~~-~~~~~~~~~-~~~~~~~~-g~pr--~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 67 ISLLKRE-MDQTMAANA-QKNKFLID-GFPR--NQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHHH-HHHHHHHCT-TCCEEEEE-SCCC--SHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHHH-HCCCCHHHH-CCCCEEEC-CCHH--HHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 6788876-412100011-24511101-1030--489999986442105543389962476
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.97 E-value=0.12 Score=25.16 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
++.|.|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.13 Score=24.95 Aligned_cols=29 Identities=31% Similarity=0.312 Sum_probs=25.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38969999859999888899998423799
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p 1097 (1288)
++|..|+|.|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.92 E-value=0.12 Score=25.15 Aligned_cols=48 Identities=15% Similarity=0.389 Sum_probs=36.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCC
Q ss_conf 98999986999928999999972888998389999960798898887444388847887
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 470 (1288)
.+-+.++||+|||||-|++.|++++... -+..|....+ ..|||..|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DVe 96 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEVD 96 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCTH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCHH
T ss_conf 5647998999988999999999873898--8986255114---------1111104445
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.85 E-value=0.12 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869999289999999728
Q 000777 413 TTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+.++|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.85 E-value=0.14 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8969999859999888899998423799
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p 1097 (1288)
+|..|+|-|.-||||||+++.|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.11 Score=25.52 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEE
Q ss_conf 93699999999997079978897366779997989999-99999871896399981590466403889999598897
Q 000777 1184 SGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVV-QDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIV 1259 (1288)
Q Consensus 1184 SgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I-~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~iv 1259 (1288)
...+......+...++++++++++=.-..-+...+... .+.++....++.+|++....+........--...-.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~ 140 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALI 140 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 52024789999999874133201102565420345554445554201410102046544433558879872799679
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.84 E-value=0.12 Score=25.22 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999988889999842379
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
.+.++|.+||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.82 E-value=0.1 Score=25.68 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999985999988889999842379997659989
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1105 (1288)
.+.|+|++||||||+.+.|+..+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.77 E-value=0.14 Score=24.71 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=27.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 69999859999888899998423799976599899505
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di 1109 (1288)
.-+.++||.||||||+++.|++.+.. +-+.+++-++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d~~ 68 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDNDTF 68 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEECHHH
T ss_conf 79998897998899999999998651--5489832899
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.69 E-value=0.13 Score=24.92 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
++.|+|+.||||||+++.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.68 E-value=0.11 Score=25.39 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.+||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.63 E-value=0.13 Score=24.89 Aligned_cols=43 Identities=35% Similarity=0.350 Sum_probs=32.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC-C-CCCEEEECCEECCC
Q ss_conf 3896999985999988889999842379-9-97659989950567
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD-P-DAGHITLDGVEIQK 1111 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~~-p-~~G~I~idG~di~~ 1111 (1288)
++|..+.+.|.|||||||+++.|..-+. . .--.+.+||.++++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 998699998999999899999999887774275089975367887
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=0.13 Score=24.82 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.55 E-value=0.093 Score=26.09 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999985999988889999842379
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
.=.|+|.|..||||||+++.|...+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 61999889999888999999998707
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.54 E-value=0.095 Score=26.03 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
++.|.||.||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.53 E-value=0.13 Score=24.97 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.+||+|..||||||+++.|..+
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.47 E-value=0.13 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=19.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8989999869999289999999728
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+.=+++++|..|+|||||++-+.+-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8579999999998989999999668
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.33 E-value=0.15 Score=24.33 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8969999859999888899998423799
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p 1097 (1288)
+|..|+|-|.-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.31 E-value=0.15 Score=24.55 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
++.|+|+.||||||+++.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.29 E-value=0.078 Score=26.72 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.24 E-value=0.14 Score=24.72 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
|+.++|++|+|||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.11 E-value=0.14 Score=24.63 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|+.|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.09 E-value=0.18 Score=23.84 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 973896999985999988889999842
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
-+++|+.+-|.|++||||||++.-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.06 E-value=0.03 Score=30.05 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=0.42 Score=20.86 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=30.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 97899827788989898999999999861896499980592244
Q 000777 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1288)
Q Consensus 541 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 584 (1288)
.+++|+||+=. |+......+.+.+.+.......|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 87999978110-89999999999985689886999973885636
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.91 E-value=0.18 Score=23.73 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999928999999972888
Q 000777 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
..+.+.||+|+||||+++++++.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.90 E-value=0.23 Score=22.91 Aligned_cols=22 Identities=32% Similarity=0.438 Sum_probs=12.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHH
Q ss_conf 8989999869999289999999
Q 000777 411 SGTTAALVGQSGSGKSTVISLI 432 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l 432 (1288)
.|.-+.+.|+||+||||+...+
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHH
T ss_conf 9999999808999999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.85 E-value=0.24 Score=22.74 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 898999986999928999999972888998
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~ 440 (1288)
+...+.|.||.|+||||+++.++..+....
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 888168889899989999999999975446
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.84 E-value=0.18 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=23.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 882898999986999928999999972
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
=+++|+.+.|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=88.83 E-value=0.15 Score=24.35 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
+++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.80 E-value=0.15 Score=24.36 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
.++|+|+..+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.70 E-value=0.17 Score=23.93 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999888899998423799
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p 1097 (1288)
.|+|-||.||||||+.+.|..-|.-
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.70 E-value=0.12 Score=25.18 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=28.5
Q ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 202888289899998699992899999997288
Q 000777 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 404 ~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
|.=+.|-+|++.+|+|++|+|||+|+..+.+..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 412564578755686799988789999999977
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.70 E-value=0.36 Score=21.35 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=25.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEE
Q ss_conf 999985999988889999842-----37999765-----9989950
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAGH-----ITLDGVE 1108 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G~-----I~idG~d 1108 (1288)
|++++|.+|+|||||++-+.+ -|.|+-|. +.+||..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~ 49 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI 49 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCCC
T ss_conf 8999998997989999999709998763761331011210002200
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.69 E-value=0.22 Score=23.12 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
+++++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.65 E-value=0.15 Score=24.34 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999988889999842379
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
++.++|++||||||+.++|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.55 E-value=0.16 Score=24.22 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699992899999997288
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.=.+.|+||.||||||+.+.|+.-|
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.53 E-value=0.21 Score=23.23 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=14.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3896999985999988889999842379
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
+||..+.+.|+=||||||+++.+++-+.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9982999966877658899999876422
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.50 E-value=0.18 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699992899999997288
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+..+.|.||.|+|||||++-++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.47 E-value=0.17 Score=23.99 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.45 E-value=0.35 Score=21.45 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869999289999999728
Q 000777 413 TTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
=+++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.37 E-value=0.24 Score=22.87 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCCCCEE-EEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 5432028-8828989999869999289999999
Q 000777 401 IFSGFSI-SISSGTTAALVGQSGSGKSTVISLI 432 (1288)
Q Consensus 401 ~l~~i~~-~i~~g~~~~ivG~sGsGKSTl~~~l 432 (1288)
-|+++-- -+++|+.+.|.|++|+|||+++.-+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 798855689969839999947999999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.33 E-value=0.21 Score=23.21 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8289899998699992899999997
Q 000777 409 ISSGTTAALVGQSGSGKSTVISLIE 433 (1288)
Q Consensus 409 i~~g~~~~ivG~sGsGKSTl~~~l~ 433 (1288)
+++|+.+.|.|++||||||+..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 5588799998589898899999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.30 E-value=0.13 Score=25.02 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=34.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCEEEE
Q ss_conf 99998699992899999997288--89983899999607988988874443888
Q 000777 414 TAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 465 (1288)
.++|+|+.|+|||||+..|+..- ....|++. +|..+.++.+++..+++++-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEE
T ss_conf 999994889809999999999709755306622-22113562698887387687
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.29 E-value=0.18 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999859999888899998423
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.|++++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=88.28 E-value=0.13 Score=24.87 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896999985999988889999842379
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
+-..+++|||+|+||||.+-=|+..+.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 997999989999998999999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.26 E-value=0.11 Score=25.48 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=22.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389699998599998888999984237
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
++.-+++|||++|+|||||++-|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.32 Score=21.80 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.24 E-value=0.2 Score=23.47 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++++|+.|+|||||++-+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.12 E-value=0.17 Score=24.02 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+++||...||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=88.12 E-value=0.1 Score=25.79 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999888899998423
Q 000777 1074 VALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1074 vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.10 E-value=0.23 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 82898999986999928999999972
Q 000777 409 ISSGTTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 409 i~~g~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++|+.+.|.|++|+|||+++.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 62885999991799998999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.10 E-value=0.17 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++++|+.|+|||||++-+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=88.08 E-value=0.1 Score=25.78 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=11.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699998599998888999984237
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
-++||+|+.|||||||+.-|.+.+
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289743899998999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.05 E-value=0.16 Score=24.13 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999888899998423799
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p 1097 (1288)
.+.|.|++||||||+++.|...+.-
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.04 E-value=0.18 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999988889999842379
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
++.|+|+.||||||..+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.03 E-value=0.17 Score=23.91 Aligned_cols=38 Identities=18% Similarity=0.475 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 8969999859999888899998423799976599899505
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di 1109 (1288)
|+.-+.++||+|+|||.|+|.|++.... --+.+|+-++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCCC
T ss_conf 9866999899998888999998621322--1000344330
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.02 E-value=0.17 Score=23.96 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998699992899999997288899
Q 000777 414 TAALVGQSGSGKSTVISLIERFYDPQ 439 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~~~ 439 (1288)
.+.+.||.|+||||++++++..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.02 E-value=0.18 Score=23.72 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=15.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999986999928999999972
Q 000777 413 TTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
.+++|+|+.||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.28 Score=22.26 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.89 E-value=0.43 Score=20.77 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=87.87 E-value=0.19 Score=23.58 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|++|+|||||++-+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.85 E-value=0.19 Score=23.57 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.82 E-value=0.2 Score=23.42 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999972888
Q 000777 414 TAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
.+++||...||||||++.|+|.--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.81 E-value=0.21 Score=23.23 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
++.+.||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.80 E-value=0.49 Score=20.34 Aligned_cols=43 Identities=7% Similarity=0.156 Sum_probs=27.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 99789982778898989899999999986189649998059224
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1288)
Q Consensus 540 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 583 (1288)
+.+|+|+||+-. +...+...+.+.+.+-..+...|++|++++.
T Consensus 108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CCCEEEECHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 640477313442-0000149999999850111104553068655
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.80 E-value=0.18 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+.+.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69997899974879999999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.77 E-value=0.27 Score=22.38 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=73.4
Q ss_pred CCCCCEEE-EEECCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHH
Q ss_conf 43101038-97389699998599998888999-98423799976599899505677978874113888357877412199
Q 000777 1059 QVFRDLNL-KIRAGKTVALVGESGSGKSTVVS-LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136 (1288)
Q Consensus 1059 ~vL~~isl-~I~~Ge~vaIvG~SGSGKSTL~~-lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~ 1136 (1288)
+-|+++-- -+++|+.+-|.|++|+|||+++. ++..........+.+... +.+... ++
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~~------------------~~ 71 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQD------------------II 71 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHHH------------------HH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHH------------------HH
T ss_conf 779885568996983999994799999999999999999856887420126---679999------------------99
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH-HHHHHHHHCC--CCCEEEEECCCCCC
Q ss_conf 99715999999999999999980002889752114302004999989936999-9999999707--99788973667799
Q 000777 1137 ANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQ-RVAIARAIVK--DPKILLLDEATSAL 1213 (1288)
Q Consensus 1137 eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQ-rlalARAll~--~p~ILiLDEpTS~L 1213 (1288)
....-. ....++.....+... -......+.-...+..... .+.-.+..++ +|+++++|--++-.
T Consensus 72 ~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~ 138 (242)
T d1tf7a1 72 KNARSF---GWDLAKLVDEGKLFI----------LDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVF 138 (242)
T ss_dssp HHHGGG---TCCHHHHHHTTSEEE----------EECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTS
T ss_pred HHHHHC---CCCHHHHHHHCCHHH----------HHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999984---998489887143024----------4421033544443024589999999999886312220020788998
Q ss_pred CH----HHHHHHHHHHHHH--CCCCEEEEEECCCHH---------HH-HCCEEEEEE
Q ss_conf 97----9899999999987--189639998159046---------64-038899995
Q 000777 1214 DA----ESERVVQDALDRV--MKNRTTVVVAHRLST---------IK-NADMIAVVK 1254 (1288)
Q Consensus 1214 D~----~te~~I~~~l~~~--~~~~TvI~IsHrl~~---------i~-~aDrI~vl~ 1254 (1288)
+. .........+... ..++|+++++|.... .. .+|.++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 139 QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 760572678999999999998639716884210255422246762335362999988
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.74 E-value=0.2 Score=23.48 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.67 E-value=0.41 Score=20.95 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.66 E-value=0.44 Score=20.69 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.65 E-value=0.22 Score=23.07 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+.|.||.||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.63 E-value=0.23 Score=22.91 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97389699998599998888999984
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~ 1092 (1288)
-+++|+.+-|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.61 E-value=0.23 Score=23.00 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+++++|.+|+|||||++-+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.59 E-value=0.22 Score=23.14 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 973896999985999988889999842
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
-|++|+.+-|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.54 E-value=0.24 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 973896999985999988889999842
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
-+++|+.+-|.|++|+||||++.-++-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.49 E-value=0.21 Score=23.22 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999988889999842379
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
.+-+.||+|+||||+++++++.+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.19 Score=23.58 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.46 E-value=0.26 Score=22.50 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.27 E-value=0.24 Score=22.79 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHH
Q ss_conf 99998599998888999984237999765998995056779788741138883578774121
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gT 1134 (1288)
.+||.|+.|||||||...|.....-. ......+.+++.|.+..+..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~----------------~~~~~~v~~iS~DdfY~t~~ 74 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK----------------YGGEKSIGYASIDDFYLTHE 74 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH----------------HGGGSCEEEEEGGGGBCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH----------------HCCCCCEEEECCCCCCCCHH
T ss_conf 99837998788999999999999987----------------27786067635677778889
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.22 E-value=0.18 Score=23.86 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699992899999997288
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.-.++|.|+.|+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.21 E-value=0.23 Score=22.96 Aligned_cols=22 Identities=50% Similarity=0.655 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.+||+|..||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.06 E-value=0.2 Score=23.36 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999997288
Q 000777 415 AALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 415 ~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+.+.||+|+||||+++.++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.47 Score=20.44 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999985999988889999842-----37999765
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAGH 1101 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G~ 1101 (1288)
|+.++|.+|+|||||++-+.. -|.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.02 E-value=0.24 Score=22.74 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999859999888899998423
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.00 E-value=0.25 Score=22.71 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.90 E-value=0.1 Score=25.74 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC
Q ss_conf 9999859999888899998423799976599899505677978874113888357877
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~l 1130 (1288)
.|||+|.|||||||+.+.|...+... | -+.++++||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.76 E-value=0.25 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++++|..|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=86.73 E-value=0.22 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
.|||+|+.++|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.25 Score=22.62 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++++|+.|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.55 E-value=0.28 Score=22.28 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHH
Q ss_conf 96999985999988889999842379997659989950567797887411388835787741219999715999999999
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEA 1150 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~ 1150 (1288)
.=++.|+|+.||||||+.+.|+.-| |-..++-- +-+|..+ ++..-+...+.+.+.-+ ....++
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~----g~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~--~~v~~~ 68 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF----ELKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQG--KLIPDD 68 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB----CCEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTT--CCCCHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH----CCEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHH--HHCCCH
T ss_conf 2169998899998799999999997----98687189-------9999998----74015668999876366--413303
Q ss_pred HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999998000288975211430200499998993699999999997079978897366
Q 000777 1151 EIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEA 1209 (1288)
Q Consensus 1151 ~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEp 1209 (1288)
.+....+.. +... ....-.++ | +-.-..|.-.+.+. +.-..++.||-+
T Consensus 69 ~~~~l~~~~-----~~~~-~~~~~ild--G--fPr~~~q~~~l~~~-~~~~~vi~L~v~ 116 (189)
T d2ak3a1 69 VMTRLVLHE-----LKNL-TQYNWLLD--G--FPRTLPQAEALDRA-YQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHHHH-----HHHH-TTSCEEEE--S--CCCSHHHHHHHHTT-CCCCEEEEEECC
T ss_pred HHHHHHHHH-----HHHH-HHCCCCCC--C--CCCHHHHHHHHHHC-CCCEEEEEEECC
T ss_conf 445445554-----4212-10584244--5--21000678876315-753299997244
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.47 E-value=0.26 Score=22.46 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999997288
Q 000777 414 TAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.+||||...+|||||++.|.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.44 E-value=0.24 Score=22.83 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.36 E-value=0.24 Score=22.78 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999728
Q 000777 414 TAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.33 E-value=0.24 Score=22.87 Aligned_cols=175 Identities=22% Similarity=0.244 Sum_probs=85.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEEECCCCC-CCHHHHHHHH--HCCCCCCC
Q ss_conf 999985999988889999842379--997659989950567797887411388835787-7412199997--15999999
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD--PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV-LFNDTIRANI--AYGKGGDA 1147 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~--p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~-lf~gTi~eNl--~~~~~~~~ 1147 (1288)
.+||+|+.|+|||||+..|+..-. ...|++. +|....++..+...+.+++-+.-.. .+++ .+-|+ ++|. .+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh-~dF 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGY-GDF 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCS-GGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCH-HHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-21068806815-543
Q ss_pred CHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHH
Q ss_conf 99999999998000288975211430200499998993699999999997079978897---366779997989999999
Q 000777 1148 TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLL---DEATSALDAESERVVQDA 1224 (1288)
Q Consensus 1148 s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiL---DEpTS~LD~~te~~I~~~ 1224 (1288)
. .+...+++.+...=+ .| +.-.....+-++.+-.|+.. +-|.+++. |.+ + |.. ..+ +.
T Consensus 81 ~-~e~~~al~~~D~avl----------vv-da~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~--~-~~~--~~l-~~ 141 (267)
T d2dy1a2 81 V-GEIRGALEAADAALV----------AV-SAEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG--G-DYY--ALL-ED 141 (267)
T ss_dssp H-HHHHHHHHHCSEEEE----------EE-ETTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC--C-CHH--HHH-HH
T ss_pred H-HHHHHHHCCCCCEEE----------EE-ECCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC--C-CCH--HHH-HH
T ss_conf 3-556543124673389----------84-23577421157887765540-44310133320222--2-101--234-46
Q ss_pred HHHHCCCCEEEEEEC----CCHH-HHH-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 998718963999815----9046-640-38899995988978159356621
Q 000777 1225 LDRVMKNRTTVVVAH----RLST-IKN-ADMIAVVKNGVIVEKGKHENLIN 1269 (1288)
Q Consensus 1225 l~~~~~~~TvI~IsH----rl~~-i~~-aDrI~vl~~G~ive~Gt~~eLl~ 1269 (1288)
+++.+....-+.+-. .... +.. ..+.+..++|...+.--|.++.+
T Consensus 142 ~~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~ 192 (267)
T d2dy1a2 142 LRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE 192 (267)
T ss_dssp HHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH
T ss_pred HHHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHH
T ss_conf 888746586768600258832687624765489961898745407777899
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.32 E-value=0.27 Score=22.38 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=30.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCE
Q ss_conf 88289899998699992899999997288899838-999996
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGI 448 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~-i~~~g~ 448 (1288)
=+++|..+.+.||+||||||++.-++....-..|. +.+|..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 966735899805777478999999999987089879998654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=86.30 E-value=0.58 Score=19.74 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999985999988889999842379
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
...+.+|||+|+||||.+-=|+..+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.26 E-value=0.23 Score=22.97 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=32.4
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 89738969999859999888899998423799976-59989950
Q 000777 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVE 1108 (1288)
Q Consensus 1066 l~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G-~I~idG~d 1108 (1288)
=-|++|..+-|.|++||||||+.--++.-..-..| -+++|...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99667358998057774789999999999870898799986544
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.23 E-value=0.37 Score=21.32 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 43101038973896999985999988889999842
Q 000777 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1059 ~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
..+|.-.+.+ .|.-+.|.|+||+||||++..|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.15 E-value=0.12 Score=25.35 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699998599998888999984237
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
.=+|+|+|++++|||||++.|.+..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.14 E-value=0.27 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.00 E-value=0.32 Score=21.79 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89699998599998888999984237
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
.+..+.|+|++|+|||||++-++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.98 E-value=0.52 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.91 E-value=0.23 Score=22.97 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 9999859999888899998423799976599899505
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di 1109 (1288)
.+-+.||.|+||||++++++.-+....+ .++|.+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~~ 71 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVL 71 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC--CCCCCCC
T ss_conf 4898799997388999999850388853--3257442
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.89 E-value=0.32 Score=21.85 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999859999888899998423799976599899
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG 1106 (1288)
++.|.|+.||||||+.+.|+--| |-..++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 99998999999899999999996----9945834
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.85 E-value=0.24 Score=22.78 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8989999869999289999999728889983899999
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 447 (1288)
|...+.++||+|+|||.|++.|+..+.. --+.+|.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~ 85 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM 85 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECC
T ss_conf 7658999778750069999999863367--7067415
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.78 E-value=0.57 Score=19.81 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=25.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998699992899999997288899838999
Q 000777 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 445 (1288)
++.|-|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=85.70 E-value=0.29 Score=22.09 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 38969999859999888899998423
Q 000777 1069 RAGKTVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1069 ~~Ge~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
++.=++.+||..|||||||++-|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.62 E-value=0.39 Score=21.09 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=27.5
Q ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 20288828989999869999289999999728
Q 000777 404 GFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 404 ~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
|.-+.+-+|++.+|.|++|+|||+|+.-+..-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 10256367887776679998989999999998
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.61 E-value=0.27 Score=22.43 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699992899999997288
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
|=..++|+|+.++|||||++.|+|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.59 E-value=0.33 Score=21.66 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=26.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8828989999869999289999999728889
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 438 (1288)
..+||.++.+.|+-||||||+.+.+++-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.57 E-value=0.33 Score=21.73 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999888899998423799
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDP 1097 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p 1097 (1288)
.|+|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.47 E-value=0.46 Score=20.56 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99998699992899999997--28889983
Q 000777 414 TAALVGQSGSGKSTVISLIE--RFYDPQAG 441 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~--g~~~~~~G 441 (1288)
++.++|.+|+|||||++-+. ..+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.40 E-value=0.56 Score=19.87 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999985999988889999842-----3799976
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G 1100 (1288)
|+.++|.+|+|||||++-+.. -|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 999999899789999999973989876377310
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.40 E-value=0.32 Score=21.80 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Q ss_conf 99998699992899999997-288
Q 000777 414 TAALVGQSGSGKSTVISLIE-RFY 436 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~-g~~ 436 (1288)
+++++|..|+|||||++-+. +..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999298999999973999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.36 E-value=0.32 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=85.28 E-value=0.21 Score=23.34 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=18.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 98999986999928999999972
Q 000777 412 GTTAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g 434 (1288)
.=+++++|++|+|||||++-+.+
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 68999999999988999988733
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.27 E-value=0.27 Score=22.36 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699992899999997288
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
-..+.+.||.|||||++++.++...
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8079988969998899999986201
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.22 E-value=0.63 Score=19.42 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.21 E-value=0.34 Score=21.60 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=31.5
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99998699992899999997---2888998389999960798898887444388
Q 000777 414 TAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 464 (1288)
-++|+|+.|||||||...|+ |... ..|++. +|..+.++.+++..+++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCC
T ss_conf 999995898998999999999648534-023365-1846985658887518860
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.21 E-value=0.32 Score=21.77 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.16 E-value=0.33 Score=21.74 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.16 E-value=0.65 Score=19.33 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869999289999999728
Q 000777 413 TTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
=+++|||-..+|||||++.|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.08 E-value=0.3 Score=22.03 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999972888
Q 000777 414 TAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
-+.+.||.|+||||+++++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.06 E-value=0.31 Score=21.96 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869999289999999728
Q 000777 413 TTAALVGQSGSGKSTVISLIERF 435 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~ 435 (1288)
.++.++|.+|+|||||++-+.+-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.01 E-value=0.31 Score=21.94 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|+.|+|||||++-+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.01 E-value=0.39 Score=21.11 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699992899999997288
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+..-+.+.||.|+|||++++.+++..
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 88646876699888308999999874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.01 E-value=0.31 Score=21.90 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 7997889736677999798999999999871896399981590466
Q 000777 1199 KDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTI 1244 (1288)
Q Consensus 1199 ~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i 1244 (1288)
.+..++++||.- .+.......+...+......+..|+++++.+.+
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 872288614344-312147898764112477644788614876656
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.95 E-value=0.32 Score=21.82 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=84.93 E-value=0.45 Score=20.58 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699992899999997288
Q 000777 413 TTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
.-+.+.||.|+|||++++.+++.+
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 648876689888359999999873
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=84.78 E-value=0.6 Score=19.58 Aligned_cols=37 Identities=35% Similarity=0.621 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 999985999988889999842-----37999765-----99899505
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAGH-----ITLDGVEI 1109 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G~-----I~idG~di 1109 (1288)
|+.++|.+|+|||||++-+.. -|.|+.|. +.+||.++
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~ 52 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV 52 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999989958899999997299986547753431011113454332
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.72 E-value=0.45 Score=20.63 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8969999859999888899998423799976
Q 000777 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1288)
Q Consensus 1070 ~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G 1100 (1288)
+...+.|+||+|+||||+++.++..+....+
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8881688898999899999999999754468
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.68 E-value=0.36 Score=21.42 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.64 E-value=0.37 Score=21.32 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.58 E-value=0.28 Score=22.22 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=27.8
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 103897389699998599998888999984237
Q 000777 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1063 ~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
|.=+.|-+|++.+|.|++|+|||||+.-+.+-.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 412564578755686799988789999999977
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.56 E-value=0.45 Score=20.58 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999997288
Q 000777 415 AALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 415 ~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
+|++|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.55 E-value=0.33 Score=21.67 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.51 E-value=0.38 Score=21.17 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 69999999999707997--8897366779997989999999998718963999815
Q 000777 1186 GQKQRVAIARAIVKDPK--ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAH 1239 (1288)
Q Consensus 1186 GQrQrlalARAll~~p~--ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsH 1239 (1288)
.+.+...+++.+++++. |+....++..........+.+.+... ..+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf 899999999999827775168763256310034999999973867-8858999820
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=84.50 E-value=0.63 Score=19.43 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=24.7
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3101038973896999985999988889999842
Q 000777 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1060 vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
.+|.--+ --.|.-+.|+|+||+||||++..|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899999-99999999980899998999999998
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.33 E-value=0.53 Score=20.02 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.32 E-value=0.59 Score=19.67 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999859999888899998423799976
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~p~~G 1100 (1288)
|+.++|.+|+|||||++-+..-.-|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.30 E-value=0.35 Score=21.53 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699992899999997288
Q 000777 413 TTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
=+++|||...+|||||+++|.+--
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 379997899998999999997789
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.30 E-value=0.28 Score=22.31 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEEC
Q ss_conf 89999869999289999999-72888998389999
Q 000777 413 TTAALVGQSGSGKSTVISLI-ERFYDPQAGEVLID 446 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l-~g~~~~~~G~i~~~ 446 (1288)
..+.|+|++|||||++++.+ ...+....+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 65899907999689999999999984799889996
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.29 E-value=0.34 Score=21.62 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=65.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHH--HCCCCCCC
Q ss_conf 999985999988889999842---3799976599899505677978874113888357877412199997--15999999
Q 000777 1073 TVALVGESGSGKSTVVSLLQR---FYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI--AYGKGGDA 1147 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g---l~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl--~~~~~~~~ 1147 (1288)
.+||+|+.|||||||+..|+- ..+ ..|++. +|....++..+...+.+++-..-..+--..-+-|+ ++|. .+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~-~dF 84 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGH-VDF 84 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSS-SSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCH-HHH
T ss_conf 999995898998999999999648534-023365-18469856588875188600112343159838999527860-226
Q ss_pred CHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHH
Q ss_conf 99999999998000288975211430200499998993699999999997079978897---366779997989999999
Q 000777 1148 TEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLL---DEATSALDAESERVVQDA 1224 (1288)
Q Consensus 1148 s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiL---DEpTS~LD~~te~~I~~~ 1224 (1288)
. .+...++..+...=+ |-+.....-.+-++....|+. .+-|.|+.. |-+-+.. ..+.+.
T Consensus 85 ~-~e~~~~l~~~D~avl-----------Vvda~~Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~-----~~~l~e 146 (276)
T d2bv3a2 85 T-IEVERSMRVLDGAIV-----------VFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADL-----WLVIRT 146 (276)
T ss_dssp S-TTHHHHHHHCCEEEE-----------EEETTTSSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCH-----HHHHHH
T ss_pred H-HHHHHHHHHHHHEEE-----------ECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCC-----CHHHHH
T ss_conf 9-999999996300577-----------322567744669999999998-5999799986445654312-----126899
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 9987189639998
Q 000777 1225 LDRVMKNRTTVVV 1237 (1288)
Q Consensus 1225 l~~~~~~~TvI~I 1237 (1288)
+++.+ +..++.+
T Consensus 147 i~~~l-~~~~vp~ 158 (276)
T d2bv3a2 147 MQERL-GARPVVM 158 (276)
T ss_dssp HHHTT-CCCEEEC
T ss_pred HHHHH-CCCEEEE
T ss_conf 99985-9971789
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.25 E-value=0.38 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
.+||+|+.++|||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.16 E-value=0.37 Score=21.29 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 99369999999999707997--8897366779997989999999998718963999815904664
Q 000777 1183 LSGGQKQRVAIARAIVKDPK--ILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIK 1245 (1288)
Q Consensus 1183 LSgGQrQrlalARAll~~p~--ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~ 1245 (1288)
-...+.+-.++++.++.++. ++....++..+.......+.+.+... ..+|++++++ .+.+.
T Consensus 144 ~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~-~~r~i~Vltk-~D~~~ 206 (299)
T d2akab1 144 PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ-GQRTIGVITK-LDLMD 206 (299)
T ss_dssp CTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT-CSSEEEEEEC-GGGSC
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEC-CCCCC
T ss_conf 314799999999998627560356640345421125999999973867-7813667702-66553
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.13 E-value=0.39 Score=21.15 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.06 E-value=0.51 Score=20.19 Aligned_cols=28 Identities=36% Similarity=0.593 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCC
Q ss_conf 9999859999888899998423-----799976
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF-----YDPDAG 1100 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl-----~~p~~G 1100 (1288)
|++++|.+|+|||||++-+.+- ++|+.|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999799899999999980988986577410
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.06 E-value=0.53 Score=20.01 Aligned_cols=21 Identities=48% Similarity=0.803 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=84.03 E-value=0.4 Score=20.98 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=11.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999859999888899998423
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
-++||+|+-|+|||||+.-|.+.
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59861179988899999999998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.96 E-value=0.37 Score=21.33 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=23.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 6999985999988889999842379997659989
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1105 (1288)
..+||+|.-||||||.++.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=83.91 E-value=0.34 Score=21.55 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=30.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEC
Q ss_conf 882898999986999928999999972888998389-9999607
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINL 450 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-~~~g~~~ 450 (1288)
.++++..+.+.||.|+|||++.+.|+++.. |.+ .+++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCH
T ss_conf 899767699989999888999999999859---97899977420
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.91 E-value=0.73 Score=18.93 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999985999988889999842-----3799976
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G 1100 (1288)
|++++|..|+|||||++-+.+ -|+|+.|
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~ 34 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 34 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899098999999984999876366223
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.87 E-value=0.53 Score=20.04 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 89999869999289999999-728889983
Q 000777 413 TTAALVGQSGSGKSTVISLI-ERFYDPQAG 441 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l-~g~~~~~~G 441 (1288)
-++.++|.+|+|||||++-+ .+...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.86 E-value=0.46 Score=20.57 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|++++|.+|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.82 E-value=0.62 Score=19.51 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999985999988889999842-----3799976
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G 1100 (1288)
|+.++|.+|+|||||++-+.+ -+.|+.|
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~ 37 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 37 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999398999999982998864454200
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.62 E-value=0.38 Score=21.23 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599998888999984237
Q 000777 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1074 vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
+-+.||+|+||||+++++++-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.61 E-value=0.42 Score=20.88 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.54 E-value=0.54 Score=20.00 Aligned_cols=39 Identities=31% Similarity=0.553 Sum_probs=27.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 96999985999988889999842-----37999765-----99899505
Q 000777 1071 GKTVALVGESGSGKSTVVSLLQR-----FYDPDAGH-----ITLDGVEI 1109 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G~-----I~idG~di 1109 (1288)
.-|++++|.+|+|||||++-+.+ .|.|+.|. +.+||.++
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 3389999989929899999997198885447542113103883176798
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.45 E-value=0.48 Score=20.37 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999988889999842379
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
|++++|.+|+|||||++-+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=83.44 E-value=0.42 Score=20.88 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999988889999842379
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
-+-+.||.|+|||++++.+.+.+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.43 E-value=0.43 Score=20.75 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.42 E-value=0.76 Score=18.79 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999985999988889999842-----37999765
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAGH 1101 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G~ 1101 (1288)
|+.++|.+|+|||||++-+.. -|.|+-|.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~ 37 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999999995989999999729999865872010
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.33 E-value=0.39 Score=21.11 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 997899827788989898999999999861896499980592244
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1288)
Q Consensus 540 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 584 (1288)
+.+++++||.-. +.......+...+......+..+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 359999824432-32157787752011233333665314743021
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=83.32 E-value=0.36 Score=21.36 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
+++++|+.|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.27 E-value=0.63 Score=19.42 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.25 E-value=0.25 Score=22.63 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=83.23 E-value=0.45 Score=20.65 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
++.++|++|+|||||++-+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.23 E-value=0.5 Score=20.25 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCCCCCCE----EEECCEEC
Q ss_conf 969999859999888899998-4237999765----99899505
Q 000777 1071 GKTVALVGESGSGKSTVVSLL-QRFYDPDAGH----ITLDGVEI 1109 (1288)
Q Consensus 1071 Ge~vaIvG~SGSGKSTL~~lL-~gl~~p~~G~----I~idG~di 1109 (1288)
--|+.++|.+|+|||||++-+ .+-+.|+-|- +.++++.+
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~ 49 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNF 49 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCEEE
T ss_conf 47799998999988999998950982788886789999776999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.14 E-value=0.41 Score=20.91 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999928999999972888
Q 000777 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~~ 437 (1288)
++++|-|.-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.12 E-value=0.63 Score=19.46 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999988889999842379
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
|+.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.08 E-value=0.43 Score=20.76 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=25.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 28989999869999289999999728889983899999
Q 000777 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1288)
Q Consensus 410 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 447 (1288)
+++. +.++||||+|||-|.+.|+.+++. .-+.+|-
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~ 101 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA 101 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHCCC--CEEEHHH
T ss_conf 8753-244189986378999999864435--3311122
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.97 E-value=0.29 Score=22.17 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.95 E-value=0.43 Score=20.79 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999988889999842379
Q 000777 1074 VALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1074 vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
+-+.||.|+||||+++++.+.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.86 E-value=0.47 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599998888999984237
Q 000777 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
-+-+.||+|+|||++++.+.+..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.76 E-value=0.48 Score=20.40 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.+||.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.71 E-value=0.11 Score=25.60 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999888899998423
Q 000777 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~gl 1094 (1288)
+++++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.61 E-value=0.63 Score=19.44 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.58 E-value=0.81 Score=18.55 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999985999988889999842-----37999765
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAGH 1101 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-----l~~p~~G~ 1101 (1288)
++.++|.+|+|||||++-+.+ .++|+.|.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999998995989999999709888545763120
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.54 E-value=0.6 Score=19.63 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.54 E-value=0.73 Score=18.91 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCCE
Q ss_conf 99998599998888999984--237999765
Q 000777 1073 TVALVGESGSGKSTVVSLLQ--RFYDPDAGH 1101 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~--gl~~p~~G~ 1101 (1288)
|+.++|.+|+|||||++-+. .-+.|+-|-
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 9999989999989999988468988872414
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=82.34 E-value=0.41 Score=20.92 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECC
Q ss_conf 973896999985999988889999842379997659-98995056
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQ 1110 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I-~idG~di~ 1110 (1288)
.++++..+.++||.|+|||++++.|+++.. |.+ .+++.+.+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~r 191 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDR 191 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCHH
T ss_conf 899767699989999888999999999859---978999774201
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.32 E-value=0.58 Score=19.73 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEEC
Q ss_conf 98999986999928999999972888-998389999
Q 000777 412 GTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLID 446 (1288)
Q Consensus 412 g~~~~ivG~sGsGKSTl~~~l~g~~~-~~~G~i~~~ 446 (1288)
.....++||+|+|||.+.+.|+..+. ....-+.+|
T Consensus 53 ~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~ 88 (315)
T d1qvra3 53 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 88 (315)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 669999788862489999999998358875348873
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=82.29 E-value=0.41 Score=20.93 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699998599998888999984237
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
..+-+.||+|+|||++++.++...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.00 E-value=0.46 Score=20.54 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 997899827788989898999999999861896499980592244
Q 000777 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1288)
Q Consensus 540 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 584 (1288)
+.+++++||.- .+.......+...+.........+++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 71899996632-000237899998863112002320126708775
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.86 E-value=0.86 Score=18.36 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.85 E-value=0.43 Score=20.74 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=31.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCE
Q ss_conf 88289899998699992899999997288899838-999996
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGI 448 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~-i~~~g~ 448 (1288)
-++.|..+.+.||+|+||||++..++.......|. |.+|..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 866633699964887488999999999875489889999897
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=81.72 E-value=0.83 Score=18.46 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=25.1
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3101038973896999985999988889999842
Q 000777 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1060 vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
.+|. ++-.-.|.-+.|+|+||+||||++-.|..
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 4889-99999999999980899999999999998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.69 E-value=0.55 Score=19.93 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.65 E-value=0.51 Score=20.17 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=36.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCEEE
Q ss_conf 97389699998599998888999984237999765-9989950567797887411388
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH-ITLDGVEIQKLQLKWLRQQMGL 1123 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~-I~idG~di~~~~~~~lR~~i~~ 1123 (1288)
-+++|..+-|.|++||||||++--++.-..-..|. |+||... .++++.++ +++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHCC
T ss_conf 8666336999648874889999999998754898899998976--67999999-8099
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.47 E-value=0.8 Score=18.60 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.42 E-value=0.57 Score=19.78 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.36 E-value=0.53 Score=20.06 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999972
Q 000777 414 TAALVGQSGSGKSTVISLIER 434 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g 434 (1288)
+++++|..|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.21 E-value=0.62 Score=19.49 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999986999928999999972888998
Q 000777 414 TAALVGQSGSGKSTVISLIERFYDPQA 440 (1288)
Q Consensus 414 ~~~ivG~sGsGKSTl~~~l~g~~~~~~ 440 (1288)
+++|-|+-|+||||+++.|...+....
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g 33 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITP 33 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999988877889999999999873468
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.07 E-value=0.53 Score=20.06 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999985999988889999842379
Q 000777 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~gl~~ 1096 (1288)
+.++|-|.-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.06 E-value=0.91 Score=18.16 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999985999988889999842
Q 000777 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
=+++++|.+|+|||||++-+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.01 E-value=0.77 Score=18.75 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999985999988889999842
Q 000777 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1072 e~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
-|+.++|.+|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.96 E-value=0.49 Score=20.29 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 310103897389699998599998888999984237
Q 000777 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1288)
Q Consensus 1060 vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~ 1095 (1288)
+|+.++ +|=-.|+|+|+.++|||||++.|+|..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=80.95 E-value=0.41 Score=20.90 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699992899999997288
Q 000777 413 TTAALVGQSGSGKSTVISLIERFY 436 (1288)
Q Consensus 413 ~~~~ivG~sGsGKSTl~~~l~g~~ 436 (1288)
=++.++|+.|+|||||++-+.+-.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.91 E-value=0.62 Score=19.47 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.91 E-value=0.47 Score=20.47 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=30.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECC
Q ss_conf 88289899998699992899999997288899838-99999
Q 000777 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDG 447 (1288)
Q Consensus 408 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~-i~~~g 447 (1288)
=++.|.++.+.||+||||||++..++....-..|. +.+|.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt 93 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 93 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 86675478980587652279999999999707998999988
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.79 E-value=0.88 Score=18.29 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.71 E-value=0.93 Score=18.07 Aligned_cols=108 Identities=14% Similarity=0.241 Sum_probs=63.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCHH
Q ss_conf 89899998699992899999997288899838999996079889888744438884788789430999971399999999
Q 000777 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490 (1288)
Q Consensus 411 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~ 490 (1288)
.+..+.+.||+|+||+|+...+.....-..- .+ ..+-++. |. + ....-+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~---------~h-------~D~~~i~--~~------------~-~~I~Id 62 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPP---------KA-------SDVLEID--PE------------G-ENIGID 62 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------CT-------TTEEEEC--CS------------S-SCBCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCC---------CC-------CCEEEEE--CC------------C-CCCCHH
T ss_conf 9855998898998889999999999843456---------79-------9889980--77------------6-789989
Q ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999998078999982989842200289999995799999999986069978998277889898989999999998618
Q 000777 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570 (1288)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~ 570 (1288)
+++... +++..-|. + .+.+|+|+||+-. +...+...+.+.+.+--.
T Consensus 63 ~IR~i~------~~~~~~~~-------~--------------------~~~KviIId~ad~-l~~~aqNaLLK~LEEPp~ 108 (198)
T d2gnoa2 63 DIRTIK------DFLNYSPE-------L--------------------YTRKYVIVHDCER-MTQQAANAFLKALEEPPE 108 (198)
T ss_dssp HHHHHH------HHHTSCCS-------S--------------------SSSEEEEETTGGG-BCHHHHHHTHHHHHSCCT
T ss_pred HHHHHH------HHHHHCCC-------C--------------------CCCEEEEEECCCC-CCHHHHHHHHHHHHCCCC
T ss_conf 999999------99961754-------5--------------------8987999947310-366666478887737898
Q ss_pred CCEEEEEECCCHH
Q ss_conf 9649998059224
Q 000777 571 NRTTVIVAHRLST 583 (1288)
Q Consensus 571 ~~t~i~itH~~~~ 583 (1288)
+...+++|++.+.
T Consensus 109 ~t~fiLit~~~~~ 121 (198)
T d2gnoa2 109 YAVIVLNTRRWHY 121 (198)
T ss_dssp TEEEEEEESCGGG
T ss_pred CCEEEECCCCHHH
T ss_conf 8522220699566
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.68 E-value=0.79 Score=18.63 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.65 E-value=0.59 Score=19.66 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=36.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHCCEEE
Q ss_conf 9738969999859999888899998423799976-59989950567797887411388
Q 000777 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGL 1123 (1288)
Q Consensus 1067 ~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G-~I~idG~di~~~~~~~lR~~i~~ 1123 (1288)
-++.|..+-|.|++||||||+...++....-..| .++||... .++++ +.+++++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH-HHHHHCC
T ss_conf 8667547898058765227999999999970799899998876--58999-9998289
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.60 E-value=0.9 Score=18.20 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-C----CCCCCC
Q ss_conf 999985999988889999842-3----799976
Q 000777 1073 TVALVGESGSGKSTVVSLLQR-F----YDPDAG 1100 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g-l----~~p~~G 1100 (1288)
|++++|..|+|||||++-+.. - ++|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999198999999972999865465301
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.22 E-value=0.88 Score=18.29 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.02 E-value=0.96 Score=17.96 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999988889999842
Q 000777 1073 TVALVGESGSGKSTVVSLLQR 1093 (1288)
Q Consensus 1073 ~vaIvG~SGSGKSTL~~lL~g 1093 (1288)
|+.++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|