Citrus Sinensis ID: 000793

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280--

MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM

cccccccccccEEEEEcccccEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEcccccEEEccccccccccccccccccccEEEEEEEccccccEEEEEEEEcccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHccccccEEEEcEEEcccEEEEEEEEEcccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEcccEEEEEEEEEccccccccccccccEEEEEcccccccccccccEEEEccccccccHHHHHHccccccEEEEEccHHHHHHHHHcccccEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEcHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHcHHHcccccHHHHHHHHHccccccccEEEEEEEEcccccccEEEEEcccccccccEEEEEEcccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEccEEEEEEccccc

cccccccccccccEEEcccccEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEccccccEEcccccccccccccccccccccEEEEEEEccHHHHEEEEEEEccccccEEEcccccEEEEccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccccccccccccccccEEEccccccccccccccccccEEEEEEccccccEEEEEEEEcccEEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEEEEEEccccccccccccccEEEEEEcccccccccccEEEEEccccccHHHHEEEEEccccEEEEEEccHHHHHHHHHHcccEEEEEEccccEEEEEcccHHHccccccccccccccEEEEccccccEEEEHHHcccHcccccHHHHHHHHHHccccccccccEEEEHHHHHHHHHccccHHHHHHHHHHHcHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHEEEEEEEEEcccHcccEEEEEEccccccccEEEEEEEccccHHEEcccccccccEEEEcccccEEEEEEcccccEEEEEcccEEEEEcccccEEEccccccccccEEcccccEccccccccccccccHcHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEcccc

matsedkqiprvhnfelvegMKLQInasgssigrnvRVQFQLRNCARTWILHWGFlyrgntnwfipaehpkqgalqtpfvksgEIYLVTIELRDPKIHAIEFILKDGihdrwlrlnhgnfrieipeidtntclqpipKDLIELRAYQnwerrgrpnnspqqqQKDYNDALKELQLQLSngislkdlqsshmtastkpvfknkeqirygvpsypcrrhdVEKWLQKnykghvktntlpssSFVALVENslgadnvisrqsyhmDHEIVVLSKIISSDYHILVAVNMKGAAILHwgiskcspgewlspppdmlpekskmVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSggswiknngenffvglhpmdpkdkvdgddKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLtwnknynvkpreiSEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVgrggqgdvgqRIRDEILVIQRNngcktgmmEEWHQklhnntspddIIICEALLNYIRCGFKIDAYWQTlnchglskqklasydrpivseprfradAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKghnsvisdsfgSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGlkdlnfshppEIMFFISLLLESLClsvvnnedliyctkdwyrvsesyRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQnkvyrrptiiiasritgeeeipvGVVAVltpdmpdvlshvsirarnnkvcfatcFDQNILRNLRLKEGKAVSIRLKSTNLIISDisssnlslsssalpsiprgitfkrKIFRgkyavsvedftpdmvgakscNIKFLRervpswikiptsvaipfgafETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKmrssgmpwpgdegwnLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIhtknplsgdnsEIYTEIVKGLGetlvgaypgramsfvtkknnlkspivtcypskliglygkpsiifrsdsngedlekyagaglydsvimndpekvvldysrdpmvgdksfqTSVFSKIAETGKIIEslygypqdieGVLKDGLIYVVQARPQM

matsedkqiprvhNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFrieipeidtntclqpIPKDLIELRAYQNWErrgrpnnspqQQQKDYNDALKELQLQLSNGISLKDLQSSHMTastkpvfknkeqirYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAelterckgEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKiyssqpndrEIVRLIMAFVGrggqgdvgqriRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSkqklasydrpivseprfradakesLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGtargrakdLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSqtyqkkfqpsvKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELitlqnkvyrrPTIIiasritgeeeiPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDisssnlslsssalpsiprgitfkrkiFRGKYAvsvedftpdmvgAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTknplsgdnSEIYTEIVKGLGETLVGAYPGRAMSFvtkknnlkspiVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM

MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPkdkvdgddkvkWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFvgrggqgdvgqrirdEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFIsllleslclsVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKstnliisdisssnlslsssalpsiPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM

***********VHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNW*****************************************************EQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWL************MVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDP**KVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVS**********SLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDI*************SIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQ*****

*************NFELVEGMKLQINAS*****RNVRVQFQLRNCARTWILHWGFLYRGNTNWF****************KSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEI***********IPKDLIELRAYQNWERRG********************************************************************************************ENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPE*SKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVG***************VKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRF*ADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKD*NFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRV**********WALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN**********************************KYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIF**********KYA***L*DSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ*

********IPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERR***********KDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM

**********RVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHM************************RHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISS**************RGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARP**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1282	2.2.26 [Sep-21-2011]
Q9STV0		1278	Alpha-glucan water dikina	yes	no	0.988	0.991	0.637	0.0
Q9AWA5		1464	Alpha-glucan water dikina	N/A	no	0.989	0.866	0.475	0.0
Q8LPT9		1475	Alpha-glucan water dikina	N/A	no	0.919	0.799	0.520	0.0
Q9SAC6		1399	Alpha-glucan water dikina	no	no	0.970	0.889	0.495	0.0
Q6ZY51		1196	Phosphoglucan, water diki	no	no	0.572	0.613	0.245	2e-40
Q2QTC2		1206	Phosphoglucan, water diki	no	no	0.563	0.598	0.238	1e-39
O29548		753	Probable phosphoenolpyruv	yes	no	0.205	0.349	0.231	6e-09
O57830		821	Probable phosphoenolpyruv	yes	no	0.128	0.200	0.259	1e-08
O27190		684	Probable phosphoenolpyruv	yes	no	0.126	0.236	0.258	2e-08
Q9V2H7		819	Probable phosphoenolpyruv	yes	no	0.128	0.201	0.254	2e-08

>sp\|Q9STV0\|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsis thaliana GN=GWD2 PE=2 SV=3	Back alignment and function desciption

 Score = 1691 bits (4379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 824/1293 (63%), Positives = 1023/1293 (79%), Gaps = 26/1293 (2%)

Query: 1    MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN 60
            MATS+ +Q      F+L+EGM+LQI  +G   G +VR +F L+NC R WILHWG +Y+GN
Sbjct: 1    MATSKSQQ------FQLIEGMELQITVTGLPNGSSVRAEFHLKNCTRAWILHWGCIYQGN 54

Query: 61   TNWFIPAEHP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGN 119
             +W+IP+EH  KQGALQT FVKSG+ Y+V +ELRDP++ AIEF+LKDG H+RWLR ++GN
Sbjct: 55   NHWYIPSEHSSKQGALQTTFVKSGDAYVVILELRDPRVRAIEFVLKDGSHNRWLRQHNGN 114

Query: 120  FRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSN 179
            FR+EIP  D +     IPK LIE RA++ W+R+GRP +S ++QQ DY++A++EL  +L+ 
Sbjct: 115  FRVEIPWNDLHAH-HRIPKTLIERRAHKIWDRKGRPQSSAREQQIDYDNAVRELHAELAR 173

Query: 180  GISLKDLQSSHMTASTKPVFKNK--EQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLP 237
            GISL +LQ++    ST PV K +  E     + SY  R+HDV+KWLQK  +   ++ ++ 
Sbjct: 174  GISLDELQAN----STVPVEKEETSEPHHTMIQSYR-RKHDVQKWLQKYTEPINRSGSVK 228

Query: 238  SSSFVALVENSLGADNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILHWGIS 296
            SS+   L + S+G +N++S++S+H+ ++EI VL + +  D  + +A NM G  +LHWG++
Sbjct: 229  SSALAELSKRSVGQENLVSQKSFHVRNYEITVLQRDVKGDCRLWIATNMAGPTVLHWGVA 288

Query: 297  KCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIW 356
            K S GEWL PPPD+LPEKSK V GACQT FTD+++   S+Q +D+NL++  FVGIQFVIW
Sbjct: 289  KSSAGEWLIPPPDVLPEKSKFVHGACQTQFTDMSSREHSYQFIDINLKRGGFVGIQFVIW 348

Query: 357  SGGSWIKNNGENFFVGLHPMDPKD-KVDGDDK--VKWLLDEISCREKEAERSLMHRFNIA 413
            SGG W+ NNG NF V L   D    K+D D+K  +KWLLDEIS REKEAERSLMHRFNIA
Sbjct: 349  SGGYWVNNNGANFVVNLKSADSTSGKLDVDEKYVLKWLLDEISEREKEAERSLMHRFNIA 408

Query: 414  AELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSS 473
             ELTERCK EGE G I IMVWMRFMA RHLTWNKNYNVKPREISEA +RFTNL++KIY  
Sbjct: 409  TELTERCKDEGEGGCIGIMVWMRFMATRHLTWNKNYNVKPREISEALERFTNLMEKIYLQ 468

Query: 474  QPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDD 533
            QPN REIVRL MA VGRGGQGDVGQRIRDEILVIQRNN CK+GMMEEWHQKLHNN+S DD
Sbjct: 469  QPNKREIVRLTMALVGRGGQGDVGQRIRDEILVIQRNNHCKSGMMEEWHQKLHNNSSADD 528

Query: 534  IIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLT 593
            +IICEALLNY+R  F+IDAYWQTL  +GL+K++LASYDRPIVSEPRFR+D+KE L RDLT
Sbjct: 529  VIICEALLNYVRSDFRIDAYWQTLQTNGLTKERLASYDRPIVSEPRFRSDSKEGLIRDLT 588

Query: 594  MYLKTLKAVHSGADLESAIETCY---KGHNSVISDSFGSLSSKLRECLTFIKAHIHDESI 650
            MYLKTLKAVHSGADLESAI+T     KGH+     +   LS KL++ L  +K  + +E+ 
Sbjct: 589  MYLKTLKAVHSGADLESAIDTFLSPSKGHHVF---AVNGLSPKLQDLLNLVKRLVREENT 645

Query: 651  NQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMF 710
              L+EKLVD+RI+LHP L   R RAKDLLFLDI+L S  KTT+E+ L  LNF++PPEI++
Sbjct: 646  EPLIEKLVDARIQLHPALRAPRTRAKDLLFLDIALESCFKTTIEKRLISLNFNNPPEIIY 705

Query: 711  FISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQ 770
             I ++LE+LCLS+VNNE++I+CTKDWYRVSE+YR +D QWALQ KA+LDRLQLVLA+R Q
Sbjct: 706  VICVVLENLCLSIVNNEEIIFCTKDWYRVSEAYRPHDVQWALQTKAVLDRLQLVLADRCQ 765

Query: 771  TYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCW 830
             Y    QP+ KYLG LL V+K+ ID FTEE++RA   AVLS L+NRF+P LRK+ANLGCW
Sbjct: 766  HYFTIIQPTAKYLGQLLRVDKHGIDVFTEEVIRAGPGAVLSTLVNRFDPSLRKIANLGCW 825

Query: 831  QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLS 890
            QVIS  +  GF+  VNELI +QNK Y +PT+IIAS++TGEEEIP GVVAVLTP M DVLS
Sbjct: 826  QVISSADAYGFVVCVNELIVVQNKFYSKPTVIIASKVTGEEEIPAGVVAVLTPSMIDVLS 885

Query: 891  HVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALP 950
            HVSIRARN+K+CFATCFDQN+L NL+ KEG+A+SI  KST L+ISD ++S++S+    + 
Sbjct: 886  HVSIRARNSKICFATCFDQNVLSNLKSKEGRAISIHTKSTGLVISDGNNSDVSVRHIFIS 945

Query: 951  SIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAF 1010
            S+PRG+  K K F G Y +S ++FT + VG+KS NIKFLRERVPSWIKIPTS A+PFG F
Sbjct: 946  SVPRGVISKGKKFCGHYVISSKEFTDERVGSKSYNIKFLRERVPSWIKIPTSAALPFGTF 1005

Query: 1011 ETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGM 1070
            E +LS++ NKD+A +IS L   +N GDL+KL+ IQEA+LQMSAP++L  EL  K+RS  M
Sbjct: 1006 ENILSDDSNKDVARRISVLKDSLNRGDLTKLKSIQEAILQMSAPMALRNELITKLRSERM 1065

Query: 1071 PWPGDE-GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVI 1129
            P+ GDE GWN +W +IKKVWASKWNERA++SC+K  L+HD +CMAVLIQE ICGDYAFVI
Sbjct: 1066 PYLGDESGWNRSWVAIKKVWASKWNERAYVSCKKNKLDHDAVCMAVLIQEVICGDYAFVI 1125

Query: 1130 HTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYG 1189
            HT NP+SGD+SEIYTEIVKGLGETLVGAYPGRAMSF+TKK NLKSP V  YPSK IGLY 
Sbjct: 1126 HTNNPVSGDSSEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVISYPSKRIGLYS 1185

Query: 1190 KPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAE 1249
            KPSIIFRSDSN EDLE  AGAGLYDSVIM++ E+VV+DYSR+P++ DKSF+  +FS IAE
Sbjct: 1186 KPSIIFRSDSNNEDLEGNAGAGLYDSVIMDEAEEVVVDYSREPLIMDKSFRVRLFSAIAE 1245

Query: 1250 TGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM 1282
             G +IES+YG PQDIEGV+K G IY+VQARPQ+
Sbjct: 1246 AGNVIESIYGCPQDIEGVVKGGHIYIVQARPQV 1278

Mediates the incorporation of phosphate into alpha-glucan, mostly at the C-6 position of glucose units.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 4

>sp\|Q9AWA5\|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2	Back alignment and function description

>sp\|Q8LPT9\|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic OS=Citrus reticulata GN=R1 PE=2 SV=1	Back alignment and function description

>sp\|Q9SAC6\|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=GWD1 PE=1 SV=2	Back alignment and function description

>sp\|Q6ZY51\|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1	Back alignment and function description

>sp\|Q2QTC2\|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2	Back alignment and function description

>sp\|O29548\|PPSA_ARCFU Probable phosphoenolpyruvate synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O57830\|PPSA_PYRHO Probable phosphoenolpyruvate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O27190\|PPSA_METTH Probable phosphoenolpyruvate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|Q9V2H7\|PPSA_PYRAB Probable phosphoenolpyruvate synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ppsA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1282
255572858		1228	alpha-glucan water dikinase, chloroplast	0.947	0.989	0.666	0.0
28393438		1278	unknown protein [Arabidopsis thaliana]	0.988	0.991	0.638	0.0
79485345		1278	phosphoglucan, water dikinase [Arabidops	0.988	0.991	0.637	0.0
297803668		1291	ATGWD2/GWD3 [Arabidopsis lyrata subsp. l	0.990	0.983	0.631	0.0
5051787		1288	putative protein [Arabidopsis thaliana]	0.964	0.959	0.613	0.0
168001040		1341	predicted protein [Physcomitrella patens	0.985	0.941	0.487	0.0
302765535		1309	hypothetical protein SELMODRAFT_266998 [	0.957	0.938	0.484	0.0
302801007		1309	hypothetical protein SELMODRAFT_233951 [	0.957	0.938	0.481	0.0
384383722		1464	alpha-glucan water dikinase [Solanum tub	0.989	0.866	0.476	0.0
413944065		1469	hypothetical protein ZEAMMB73_267625 [Ze	0.993	0.867	0.463	0.0

>gi\|255572858\|ref\|XP_002527361.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] gi\|223533280\|gb\|EEF35033.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1738 bits (4501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 863/1295 (66%), Positives = 1022/1295 (78%), Gaps = 80/1295 (6%)

Query: 1    MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN 60
            MA+S   + PRV +F+LV+GM+ QIN SGS  GRNVR++ QL+NC RTWILHWG ++ GN
Sbjct: 1    MASS---KTPRVKHFQLVDGMQFQINVSGSLKGRNVRIELQLKNCTRTWILHWGCVFHGN 57

Query: 61   TNWFIPAEHP-----KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRL 115
             NWFIP         KQGAL+TPF KSGE Y+V IELRDP +HAIEF+LKDG  +RW+RL
Sbjct: 58   PNWFIPTGQSSGTSYKQGALETPFTKSGEFYVVNIELRDPTLHAIEFVLKDGGSNRWMRL 117

Query: 116  NHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175
            N+GNFR+++P+ D NT   P+PKDLI+ +AY  WE +GRP  +P+QQ++DY+DA++ELQ 
Sbjct: 118  NNGNFRVDLPDHDENTIHPPVPKDLIQHKAYLIWESKGRPVRTPEQQKQDYDDAVRELQN 177

Query: 176  QLSNGISLKDLQSSHMTAST--KPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKT 233
            QL  G SL D+QSS ++AST  K +  ++EQ      SY CRRHDV+ WL K+  GH ++
Sbjct: 178  QLIRGTSLNDVQSSCISASTNTKALADSREQSSCVHSSY-CRRHDVDHWLHKHSVGHERS 236

Query: 234  NTLPSSSFVALVENSLGADNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILH 292
              +P S+F+ LVE + G D +++ Q++H+ ++EIVVL+K+I  D H LVAVN KG  +LH
Sbjct: 237  TNMPFSAFMDLVERTTGGDKIVTGQNHHVSNYEIVVLNKVIKGDNHTLVAVNSKGTIVLH 296

Query: 293  WGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQ 352
            WG+SK SPGEWL+PP D+LPE+S ++A ACQTYFT+I+T +GSFQ               
Sbjct: 297  WGVSKLSPGEWLAPPSDILPERSTLLAYACQTYFTEISTGKGSFQ--------------- 341

Query: 353  FVIWSGGSWIKNNGENFFVGLHPMDPKDKVDGDDK--VKWLLDEISCREKEAERSLMHRF 410
                                         VDGD K  VKWLLDEI  RE EAERSLM RF
Sbjct: 342  -----------------------------VDGDGKQIVKWLLDEIYRREIEAERSLMLRF 372

Query: 411  NIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKI 470
            NIA EL ERCK EGE GLI I+VW+RFMACRHL WNKNYNVKPREISEAQD+FTNLLQKI
Sbjct: 373  NIATELMERCKFEGESGLIGILVWLRFMACRHLMWNKNYNVKPREISEAQDKFTNLLQKI 432

Query: 471  YSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTS 530
            Y SQPN+REI+RLIM  VGRGGQGDVGQRIRDEILVIQRNN CKTGMMEEWHQKLHNN+S
Sbjct: 433  YLSQPNNREIMRLIMLCVGRGGQGDVGQRIRDEILVIQRNNDCKTGMMEEWHQKLHNNSS 492

Query: 531  PDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTR 590
            PDD+IICEALLNYIRCGF+ DAYWQTLN +GL+K+ LASYDRPIVSEP F   AKE LTR
Sbjct: 493  PDDVIICEALLNYIRCGFRADAYWQTLNANGLTKEMLASYDRPIVSEPHFNTAAKEGLTR 552

Query: 591  DLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESI 650
            DLT+YL+TLKAVHSGADLESAIETC        S  F     KL+E + +   +      
Sbjct: 553  DLTLYLRTLKAVHSGADLESAIETCLGP-----SSKF-----KLKEIILYDLIY------ 596

Query: 651  NQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMF 710
                +KL++SRIEL  VL T+  RAKDLLF D++L SAI+T ME  LK L+F    +IMF
Sbjct: 597  ---FQKLLESRIELRLVLLTSSERAKDLLFFDVALDSAIRTIMESRLKHLSFDRLQDIMF 653

Query: 711  FISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQ 770
            +ISL+LE+LCL+ VNNEDLI C KDWYRV ESY+ ND QWALQ KA+LDRLQL+LA+RS 
Sbjct: 654  YISLVLENLCLTTVNNEDLICCIKDWYRVRESYKANDVQWALQTKAVLDRLQLILADRSL 713

Query: 771  TYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCW 830
             YQKK QPS +YLG LLG+ K VID FTEEL+RA S  +LS L+NRF+PVLRKVA+LGCW
Sbjct: 714  NYQKKIQPSAQYLGKLLGIGKSVIDMFTEELIRAGSATILSTLVNRFDPVLRKVASLGCW 773

Query: 831  QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLS 890
            QVISPVEVCGF+T VNELIT+QN+VYR+PT+IIA+R++GEEEIP GVVAVLTPDMPD+LS
Sbjct: 774  QVISPVEVCGFVTCVNELITIQNRVYRKPTVIIANRVSGEEEIPEGVVAVLTPDMPDILS 833

Query: 891  HVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALP 950
            HVSIRARN+KVCFATCFDQNIL+NL+LKEGKA+SI LKS NLIISDIS SNLSL+SS   
Sbjct: 834  HVSIRARNSKVCFATCFDQNILKNLKLKEGKAISISLKSMNLIISDISGSNLSLNSSICT 893

Query: 951  SIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAF 1010
            SI R +TFKRK F GKYA+SVE+FT +MVGAKSCNIKFLR++VPSWIKIP SVA+PFG F
Sbjct: 894  SIARPVTFKRKTFYGKYAISVEEFTAEMVGAKSCNIKFLRKKVPSWIKIPISVALPFGTF 953

Query: 1011 ETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGM 1070
            E VLSENINKD+ANKIS  YK +  GD +KLQ IQ A+ QMSAPLSL  ELK+KMRSS +
Sbjct: 954  EAVLSENINKDLANKISGFYKSVLSGDFTKLQAIQGAIQQMSAPLSLTCELKSKMRSSRL 1013

Query: 1071 PWPGDEG---WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAF 1127
            PWPGDE    WN AW++IKKVWASKWNER  +SCRKANLNHDNL MAVLIQE ICGDYAF
Sbjct: 1014 PWPGDESEERWNHAWKAIKKVWASKWNERVHVSCRKANLNHDNLRMAVLIQEVICGDYAF 1073

Query: 1128 VIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGL 1187
            VIHTKNPL+GD SEIY EIVKGLGETLVGAYPGRAMSF+TKK+N+  PIV  YPSK IGL
Sbjct: 1074 VIHTKNPLTGDASEIYIEIVKGLGETLVGAYPGRAMSFITKKSNINFPIVISYPSKNIGL 1133

Query: 1188 YGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKI 1247
            Y K S+IFRSDSNGED+E +AGAGLYDSV+M++ E+VVL+YSRD M+ DK+FQ S+FSKI
Sbjct: 1134 YSKKSLIFRSDSNGEDVEAFAGAGLYDSVLMDEEERVVLNYSRDRMIVDKAFQVSLFSKI 1193

Query: 1248 AETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM 1282
            AE G+++E LYG PQDIEGV+KDG IY+VQARPQ+
Sbjct: 1194 AEAGRVMEGLYGCPQDIEGVVKDGAIYIVQARPQV 1228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|28393438\|gb\|AAO42141.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|79485345\|ref\|NP_194176.3\| phosphoglucan, water dikinase [Arabidopsis thaliana] gi\|332278206\|sp\|Q9STV0.3\|GWD2_ARATH RecName: Full=Alpha-glucan water dikinase 2; Flags: Precursor gi\|332659506\|gb\|AEE84906.1\| phosphoglucan, water dikinase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297803668\|ref\|XP_002869718.1\| ATGWD2/GWD3 [Arabidopsis lyrata subsp. lyrata] gi\|297315554\|gb\|EFH45977.1\| ATGWD2/GWD3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|5051787\|emb\|CAB45080.1\| putative protein [Arabidopsis thaliana] gi\|7269295\|emb\|CAB79355.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|168001040\|ref\|XP_001753223.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162695509\|gb\|EDQ81852.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|302765535\|ref\|XP_002966188.1\| hypothetical protein SELMODRAFT_266998 [Selaginella moellendorffii] gi\|300165608\|gb\|EFJ32215.1\| hypothetical protein SELMODRAFT_266998 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|302801007\|ref\|XP_002982260.1\| hypothetical protein SELMODRAFT_233951 [Selaginella moellendorffii] gi\|300149852\|gb\|EFJ16505.1\| hypothetical protein SELMODRAFT_233951 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|384383722\|gb\|AFH88388.1\| alpha-glucan water dikinase [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|413944065\|gb\|AFW76714.1\| hypothetical protein ZEAMMB73_267625 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1282
TAIR\|locus:2136027		1278	PWD "phosphoglucan, water diki	0.988	0.991	0.610	0.0
TAIR\|locus:2019953		1399	SEX1 "STARCH EXCESS 1" [Arabid	0.830	0.761	0.501	6.3e-309
TAIR\|locus:2151089		1196	PWD "PHOSPHOGLUCAN WATER DIKIN	0.156	0.167	0.280	3.2e-33
TAIR\|locus:2196759		887	AMY3 "alpha-amylase-like 3" [A	0.090	0.130	0.285	6e-05
TIGR_CMR\|BA_3116		868	BA_3116 "phosphoenolpyruvate s	0.084	0.124	0.205	0.00022
TIGR_CMR\|DET_0554		758	DET_0554 "phosphoenolpyruvate	0.062	0.105	0.312	0.00025

TAIR\|locus:2136027 PWD "phosphoglucan, water dikinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4054 (1432.1 bits), Expect = 0., P = 0.
 Identities = 789/1293 (61%), Positives = 975/1293 (75%)

Query:     1 MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN 60
             MATS+ +Q      F+L+EGM+LQI  +G   G +VR +F L+NC R WILHWG +Y+GN
Sbjct:     1 MATSKSQQ------FQLIEGMELQITVTGLPNGSSVRAEFHLKNCTRAWILHWGCIYQGN 54

Query:    61 TNWFIPAEHP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGN 119
              +W+IP+EH  KQGALQT FVKSG+ Y+V +ELRDP++ AIEF+LKDG H+RWLR ++GN
Sbjct:    55 NHWYIPSEHSSKQGALQTTFVKSGDAYVVILELRDPRVRAIEFVLKDGSHNRWLRQHNGN 114

Query:   120 FRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSN 179
             FR+EIP  D +   + IPK LIE RA++ W+R+GRP +S ++QQ DY++A++EL  +L+ 
Sbjct:   115 FRVEIPWNDLHAHHR-IPKTLIERRAHKIWDRKGRPQSSAREQQIDYDNAVRELHAELAR 173

Query:   180 GISLKDLQSSHMTASTKPVFKNK--EQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLP 237
             GISL +LQ++    ST PV K +  E     + SY  R+HDV+KWLQK  +   ++ ++ 
Sbjct:   174 GISLDELQAN----STVPVEKEETSEPHHTMIQSYR-RKHDVQKWLQKYTEPINRSGSVK 228

Query:   238 SSSFVALVENSLGADNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILHWGIS 296
             SS+   L + S+G +N++S++S+H+ ++EI VL + +  D  + +A NM G  +LHWG++
Sbjct:   229 SSALAELSKRSVGQENLVSQKSFHVRNYEITVLQRDVKGDCRLWIATNMAGPTVLHWGVA 288

Query:   297 KCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIW 356
             K S GEWL PPPD+LPEKSK V GACQT FTD+++   S+Q +D+NL++  FVGIQFVIW
Sbjct:   289 KSSAGEWLIPPPDVLPEKSKFVHGACQTQFTDMSSREHSYQFIDINLKRGGFVGIQFVIW 348

Query:   357 SGGSWIKNNGENFFVGLHPMDPXXXXXXXXXXX---WLLDEISCREKEAERSLMHRFNIA 413
             SGG W+ NNG NF V L   D               WLLDEIS REKEAERSLMHRFNIA
Sbjct:   349 SGGYWVNNNGANFVVNLKSADSTSGKLDVDEKYVLKWLLDEISEREKEAERSLMHRFNIA 408

Query:   414 AELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSS 473
              ELTERCK EGE G I IMVWMRFMA RHLTWNKNYNVKPREISEA +RFTNL++KIY  
Sbjct:   409 TELTERCKDEGEGGCIGIMVWMRFMATRHLTWNKNYNVKPREISEALERFTNLMEKIYLQ 468

Query:   474 QPNDREIVRLIMAFXXXXXXXXXXXXXXXEILVIQRNNGCKTGMMEEWHQKLHNNTSPDD 533
             QPN REIVRL MA                EILVIQRNN CK+GMMEEWHQKLHNN+S DD
Sbjct:   469 QPNKREIVRLTMALVGRGGQGDVGQRIRDEILVIQRNNHCKSGMMEEWHQKLHNNSSADD 528

Query:   534 IIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLT 593
             +IICEALLNY+R  F+IDAYWQTL  +GL+K++LASYDRPIVSEPRFR+D+KE L RDLT
Sbjct:   529 VIICEALLNYVRSDFRIDAYWQTLQTNGLTKERLASYDRPIVSEPRFRSDSKEGLIRDLT 588

Query:   594 MYLKTLKAVHSGADLESAIETCY---KGHNSVISDSFGSLSSKLRECLTFIKAHIHDESI 650
             MYLKTLKAVHSGADLESAI+T     KGH+     +   LS KL++ L  +K  + +E+ 
Sbjct:   589 MYLKTLKAVHSGADLESAIDTFLSPSKGHHVF---AVNGLSPKLQDLLNLVKRLVREENT 645

Query:   651 NQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMF 710
               L+EKLVD+RI+LHP L   R RAKDLLFLDI+L S  KTT+E+ L  LNF++PPEI++
Sbjct:   646 EPLIEKLVDARIQLHPALRAPRTRAKDLLFLDIALESCFKTTIEKRLISLNFNNPPEIIY 705

Query:   711 FIXXXXXXXXXXVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQ 770
              I          +VNNE++I+CTKDWYRVSE+YR +D QWALQ KA+LDRLQLVLA+R Q
Sbjct:   706 VICVVLENLCLSIVNNEEIIFCTKDWYRVSEAYRPHDVQWALQTKAVLDRLQLVLADRCQ 765

Query:   771 TYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCW 830
              Y    QP+ KYLG LL V+K+ ID FTEE++RA   AVLS L+NRF+P LRK+ANLGCW
Sbjct:   766 HYFTIIQPTAKYLGQLLRVDKHGIDVFTEEVIRAGPGAVLSTLVNRFDPSLRKIANLGCW 825

Query:   831 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLS 890
             QVIS  +  GF+  VNELI +QNK Y +PT+IIAS++TGEEEIP GVVAVLTP M DVLS
Sbjct:   826 QVISSADAYGFVVCVNELIVVQNKFYSKPTVIIASKVTGEEEIPAGVVAVLTPSMIDVLS 885

Query:   891 HVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKXXXXXXXXXXXXXXXXXXXXXX 950
             HVSIRARN+K+CFATCFDQN+L NL+ KEG+A+SI  K                      
Sbjct:   886 HVSIRARNSKICFATCFDQNVLSNLKSKEGRAISIHTKSTGLVISDGNNSDVSVRHIFIS 945

Query:   951 XXPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAF 1010
               PRG+  K K F G Y +S ++FT + VG+KS NIKFLRERVPSWIKIPTS A+PFG F
Sbjct:   946 SVPRGVISKGKKFCGHYVISSKEFTDERVGSKSYNIKFLRERVPSWIKIPTSAALPFGTF 1005

Query:  1011 ETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGM 1070
             E +LS++ NKD+A +IS L   +N GDL+KL+ IQEA+LQMSAP++L  EL  K+RS  M
Sbjct:  1006 ENILSDDSNKDVARRISVLKDSLNRGDLTKLKSIQEAILQMSAPMALRNELITKLRSERM 1065

Query:  1071 PWPGDE-GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVI 1129
             P+ GDE GWN +W +IKKVWASKWNERA++SC+K  L+HD +CMAVLIQE ICGDYAFVI
Sbjct:  1066 PYLGDESGWNRSWVAIKKVWASKWNERAYVSCKKNKLDHDAVCMAVLIQEVICGDYAFVI 1125

Query:  1130 HTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYG 1189
             HT NP+SGD+SEIYTEIVKGLGETLVGAYPGRAMSF+TKK NLKSP V  YPSK IGLY 
Sbjct:  1126 HTNNPVSGDSSEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVISYPSKRIGLYS 1185

Query:  1190 KPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAE 1249
             KPSIIFRSDSN EDLE  AGAGLYDSVIM++ E+VV+DYSR+P++ DKSF+  +FS IAE
Sbjct:  1186 KPSIIFRSDSNNEDLEGNAGAGLYDSVIMDEAEEVVVDYSREPLIMDKSFRVRLFSAIAE 1245

Query:  1250 TGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM 1282
              G +IES+YG PQDIEGV+K G IY+VQARPQ+
Sbjct:  1246 AGNVIESIYGCPQDIEGVVKGGHIYIVQARPQV 1278

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR\|locus:2019953 SEX1 "STARCH EXCESS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2196759 AMY3 "alpha-amylase-like 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_3116 BA_3116 "phosphoenolpyruvate synthase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0554 DET_0554 "phosphoenolpyruvate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STV0	GWD2_ARATH	2, ., 7, ., 9, ., 4	0.6372	0.9882	0.9913	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.9.4	0.991
3rd Layer	2.7.9	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1282
pfam01326		324	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PE	2e-30
TIGR01418		782	TIGR01418, PEP_synth, phosphoenolpyruvate synthase	9e-15
PRK06464		795	PRK06464, PRK06464, phosphoenolpyruvate synthase;	2e-11
PLN02784		894	PLN02784, PLN02784, alpha-amylase	4e-11
COG0574		740	COG0574, PpsA, Phosphoenolpyruvate synthase/pyruva	2e-10
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	5e-09
PLN02784		894	PLN02784, PLN02784, alpha-amylase	6e-07
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	6e-06
PLN02784		894	PLN02784, PLN02784, alpha-amylase	0.002

>gnl\|CDD\|216434 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain	Back alignment and domain information

 Score =  122 bits (309), Expect = 2e-30
 Identities = 78/336 (23%), Positives = 123/336 (36%), Gaps = 67/336 (19%)

Query: 975  TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFIN 1034
              D+VG K+ N+  L       + +P    I   AF   L EN  ++    + R     +
Sbjct: 3    DVDLVGGKAANLAELARAG---LPVPPGFVITTEAFRRFLEENGLREEILSLLRPLLLSD 59

Query: 1035 GGDLSKL-QEIQEAVLQMSAPLSLIYELKNK-----------MRSS-------GMPWPGD 1075
               L      I+E +L    P  L+  L              +RSS          + G 
Sbjct: 60   RSSLDAASPGIRELILNAPLPDELVEALAAALDELGADAPVAVRSSATAEDLPEASFAGQ 119

Query: 1076 -------EGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFV 1128
                    G      +IK VWAS ++ RA    +   ++ + + MAV++Q  +  D + V
Sbjct: 120  YDTYLNVNGLEQLLDAIKAVWASLFSPRALAYRQARGIDDEEVGMAVVVQPMVDADASGV 179

Query: 1129 IHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGR--AMSFVTKKNNLKSPIVTCYPSKLIG 1186
              T++P +GD   +  E V GLGE +V    G     +FV  ++                
Sbjct: 180  AFTRDPSTGDRDLVVIEAVWGLGEAVVS---GEVTPDTFVVSRD---------------- 220

Query: 1187 LYGKPSIIFRSDSNGEDLEKYAGAGL-YDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFS 1245
                 ++  R     E      G G     V        VL         D   Q     
Sbjct: 221  ---DGTVRERELGQKEVALVLEGGGTVEVPVPEERRSAPVLT--------DAQLQE---- 265

Query: 1246 KIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1281
             +A+  K +E+ +G PQDIE  +  G +Y++QARP 
Sbjct: 266  -LADLAKRLEAHFGSPQDIEWAIDGGRLYILQARPI 300

This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). Length = 324

>gnl\|CDD\|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase	Back alignment and domain information

>gnl\|CDD\|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|215419 PLN02784, PLN02784, alpha-amylase	Back alignment and domain information

>gnl\|CDD\|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|215419 PLN02784, PLN02784, alpha-amylase	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|215419 PLN02784, PLN02784, alpha-amylase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1282
PLN02784		894	alpha-amylase	100.0
PRK06464		795	phosphoenolpyruvate synthase; Validated	100.0
PRK06241		871	phosphoenolpyruvate synthase; Validated	100.0
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	100.0
PF01326		327	PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate	100.0
PRK05878		530	pyruvate phosphate dikinase; Provisional	100.0
COG0574		740	PpsA Phosphoenolpyruvate synthase/pyruvate phospha	100.0
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	100.0
PRK09279		879	pyruvate phosphate dikinase; Provisional	99.97
PRK05849		783	hypothetical protein; Provisional	99.93
PLN02784		894	alpha-amylase	99.92
PLN02316		1036	synthase/transferase	97.25
PRK05849		783	hypothetical protein; Provisional	96.6
PLN02316		1036	synthase/transferase	96.19
PRK08296		603	hypothetical protein; Provisional	95.8
PF00391		80	PEP-utilizers: PEP-utilising enzyme, mobile domain	95.58
PRK06241		871	phosphoenolpyruvate synthase; Validated	95.33
PF03423		87	CBM_25: Carbohydrate binding domain (family 25); I	95.14
PRK05865		854	hypothetical protein; Provisional	93.45
PRK06354		590	pyruvate kinase; Provisional	93.15
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	93.02
PRK05878		530	pyruvate phosphate dikinase; Provisional	92.63
PRK11377		473	dihydroxyacetone kinase subunit M; Provisional	92.48
PRK06464		795	phosphoenolpyruvate synthase; Validated	92.44
PRK09279		879	pyruvate phosphate dikinase; Provisional	91.8
PF03423		87	CBM_25: Carbohydrate binding domain (family 25); I	91.75
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	90.42
PRK11177		575	phosphoenolpyruvate-protein phosphotransferase; Pr	88.63
TIGR01417		565	PTS_I_fam phosphoenolpyruvate-protein phosphotrans	87.83
COG3848		111	Phosphohistidine swiveling domain [Signal transduc	87.67
COG1080		574	PtsA Phosphoenolpyruvate-protein kinase (PTS syste	86.11
PRK11061		748	fused phosphoenolpyruvate-protein phosphotransfera	85.36

>PLN02784 alpha-amylase	Back alignment and domain information

Probab=100.00  E-value=1.5e-51  Score=502.29  Aligned_cols=295  Identities=24%  Similarity=0.465  Sum_probs=246.0

Q ss_pred             ceeeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCccccc
Q 000793           12 VHNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQT   77 (1282)
Q Consensus        12 ~~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~~l~lHWGv~~~~~--~~W~~P~~--~P------k~~a~~T   77 (1282)
                      ...|.|....    ++-|-|. ..++.+.+|.+.+. .+++|+|||||++.++  +||.+||+  +|      |++||||
T Consensus        79 kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT  156 (894)
T PLN02784         79 KETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIET  156 (894)
T ss_pred             eeeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEec
Confidence            3467765554    2334443 67788999999866 7788999999999885  89999999  44      8999999


Q ss_pred             ccccc--cc-cEEEEEEec-CCcceeEEEEEEeccccccccccCCcccccCCCCCCCCCCCCCchhhHh-hhhhhhhhcC
Q 000793           78 PFVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIE-LRAYQNWERR  152 (1282)
Q Consensus        78 pf~~~--g~-~~~v~ie~~-d~~i~ai~Fvl~de~~~~W~k~~g~nf~v~l~~~~~~~~~~~vpe~lv~-~~a~~~We~~  152 (1282)
                      ||+++  |+ .+.|+|||+ ++++.||+||||+|++|+|||++|+||+|+||+......+      +++ .+.+..|.+ 
T Consensus       157 ~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~------~~~~~~~~~~~~~-  229 (894)
T PLN02784        157 PLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGN------NVGAKKGFGIWPG-  229 (894)
T ss_pred             cccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccc------eeehhhhcCcCcC-
Confidence            99996  44 788889999 9999999999999999999999999999999997665655      344 578888988 


Q ss_pred             CCCCCChhhhhHHHHHHHHHHHHHhhcCCChHHhhhhcccCCCCCCCCCccccccCCCCCCccccchHHHhhhccc--CC
Q 000793          153 GRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYK--GH  230 (1282)
Q Consensus       153 g~p~~~~~~~~~~~~~a~~~l~~~l~~G~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~  230 (1282)
                                                   .|.+|+..+.++ +.++++.+++.  +.+..  +....++ |++||+  |+
T Consensus       230 -----------------------------~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~~~-~~~~~~~~~~  274 (894)
T PLN02784        230 -----------------------------ALGQLSNILLKD-EGSPSKEQDKS--SSELD--SAAERKG-LKGFYEEMPI  274 (894)
T ss_pred             -----------------------------ccccccchhccC-CCCCcccCCCc--ccccc--ccccccc-chhhhhccce
Confidence                                         788888777776 66666655544  32322  2233444 888998  78


Q ss_pred             CccCCCCchhHHHHHhhhcCCCcceeeeeeecceEEEEEEEee--CCceEEEEEecCCCCeEEEeeeecCCCCcccCCCC
Q 000793          231 VKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPP  308 (1282)
Q Consensus       231 ~k~~~~p~~~~~~~~~~~~~~~~v~~~k~f~l~~ei~V~v~~~--~g~~~V~v~td~~~~lvLHWGv~~~~~~eW~~PP~  308 (1282)
                      .|+  +.++                        +.+.|+|+++  ++|++|+|+||+|++|||||||||++++||++||+
T Consensus       275 ~k~--~~~~------------------------~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~  328 (894)
T PLN02784        275 VKR--VAVD------------------------NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPE  328 (894)
T ss_pred             eeE--EEec------------------------ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCC
Confidence            887  5565                        8899999975  78999999999999999999999999999999999


Q ss_pred             CCCCCccccccceeeeeeecccCCCcceeEEEEEccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCC
Q 000793          309 DMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK  379 (1282)
Q Consensus       309 ~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~~~~~gi~FVLk~-~~~W~k~~G~DF~V~l~~~~~~  379 (1282)
                      +++|+||++++|||||||++.+++.++++.++|   ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus       329 ~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~  397 (894)
T PLN02784        329 PHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL  397 (894)
T ss_pred             CCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence            999999999999999999999988889998777   7899999999999 6999999999999999976543

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>PRK08296 hypothetical protein; Provisional	Back alignment and domain information

>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]	Back alignment and domain information

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity	Back alignment and domain information

>PRK05865 hypothetical protein; Provisional	Back alignment and domain information

>PRK06354 pyruvate kinase; Provisional	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK11377 dihydroxyacetone kinase subunit M; Provisional	Back alignment and domain information

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional	Back alignment and domain information

>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase	Back alignment and domain information

>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]	Back alignment and domain information

>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1282
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	3e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Length = 794	Back alignment and structure

 Score = 93.0 bits (231), Expect = 3e-19
 Identities = 71/349 (20%), Positives = 130/349 (37%), Gaps = 72/349 (20%)

Query: 977  DMVGAKSCNI-KFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFING 1035
            + VG K+ ++ + + +     +++P   A    A+   L+ N    ++ +IS     ++ 
Sbjct: 18   ERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDV 74

Query: 1036 GDLSKLQE----IQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRS------- 1084
             D+++L      I++ +L    P  L  E++           G +  ++A RS       
Sbjct: 75   EDVAELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADI-SVAVRSSATAEDL 133

Query: 1085 ------------------------IKKVWASKWNERAFISCRKAN-LNHDNLCMAVLIQE 1119
                                    +  V+AS +N+RA IS R      HD + ++  +Q 
Sbjct: 134  PDASFAGQQETFLNINGLDNVKEAMHHVFASLYNDRA-ISYRVHKGFEHDIVALSAGVQR 192

Query: 1120 TICGDYAF--VIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAM--SFVTKKNNLKSP 1175
             +  D     V+ T +  SG +  ++     GLGE +V    G      F   K  LK+ 
Sbjct: 193  MVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQ---GAVNPDEFYVFKPTLKA- 248

Query: 1176 IVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVG 1235
                         GKP+I+ ++  +      +         + N    V  +      + 
Sbjct: 249  -------------GKPAILRKTMGSKHIKMIFTDKAEAGKSVTN--VDVPEEDRNRFSIT 293

Query: 1236 DKSFQTSVFSKIAETGKIIESLYGYPQDIEGVL--KDGLIYVVQARPQM 1282
            D+         +A     IE  YG P DIE      DG +Y++QARP+ 
Sbjct: 294  DEEITE-----LAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPET 337

PyMOL of 2ols

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1282
d1kbla3		375	d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N	3e-11
d1h6za3		405	d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N	4e-09
d1vbga3		380	d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N	4e-06

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} Length = 375	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Clostridium symbiosum [TaxId: 1512]

 Score = 64.6 bits (156), Expect = 3e-11
 Identities = 39/339 (11%), Positives = 96/339 (28%), Gaps = 27/339 (7%)

Query: 966  KYAVSVEDFTPDM---VGAKSCNIKFLRE---RVPSWIKIPTSVAIPFGAFETVLSENIN 1019
            K+    E+    M   +G K CN+  +      +P    + T     +      +++ I 
Sbjct: 2    KWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQ 61

Query: 1020 KDIANKISRL---YKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDE 1076
              I   I+ L        G     L     +  + S P  +   L   +    +     +
Sbjct: 62   DQIFEAITWLEELNGKKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKK 121

Query: 1077 GWNLAWRS-------------IKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICG 1123
              N  +               + +V  S + +       +  ++ D    A  ++E    
Sbjct: 122  TGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKELAEK 181

Query: 1124 DYAFV--IHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYP 1181
              A             +  +     VK +  +                 +  + +     
Sbjct: 182  FKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQTM 241

Query: 1182 SKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQT 1241
                      + +  + +     +   G  L +       + V    +  P+   ++   
Sbjct: 242  VFGNKGETSGTGVAFTRNPSTGEKGIYGEYLIN---AQGEDVVAGVRTPQPITQLENDMP 298

Query: 1242 SVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARP 1280
              + +  +    +E  +   QD+E  +++G +Y +Q R 
Sbjct: 299  DCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRN 337

PyMOL of d1kbla3

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 405	Back information, alignment and structure

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} Length = 380	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1282
d1h6za3		405	Pyruvate phosphate dikinase, N-terminal domain {Tr	100.0
d1vbga3		380	Pyruvate phosphate dikinase, N-terminal domain {Ma	99.97
d1kbla3		375	Pyruvate phosphate dikinase, N-terminal domain {Cl	99.97
d1zyma2		124	N-terminal domain of enzyme I of the PEP:sugar pho	97.3
d1h6za2		132	Pyruvate phosphate dikinase, central domain {Trypa	94.88
d1vbga2		135	Pyruvate phosphate dikinase, central domain {Maize	93.65
d1kbla2		133	Pyruvate phosphate dikinase, central domain {Clost	93.02
d2hi6a1		132	Hypothetical protein AF0055 {Archaeoglobus fulgidu	91.23

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=2.2e-37  Score=295.71  Aligned_cols=268  Identities=18%  Similarity=0.198  Sum_probs=176.5

Q ss_pred             CCEEEECC----CCCC---CCCCHHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHCC-CHHHHHHHHHHHHHHC--
Q ss_conf             76036479----9798---754654197998443189964589950419789999998115-3049999999984308--
Q 000793          965 GKYAVSVE----DFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI-NKDIANKISRLYKFIN-- 1034 (1282)
Q Consensus       965 ~~~vi~l~----e~~~---~~vGgKAAnLa~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~-n~~L~~~I~~l~a~l~-- 1034 (1282)
                      .+|++++.    +.+.   .+||||++|||+|.+   .|++||+|||||+.+|++|++.+. +..++..|...+..++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~---~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~   79 (405)
T d1h6za3           3 KKWVYYFGGGNADGNKNMKELLGGKGANLAEMVN---LGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKE   79 (405)
T ss_dssp             CCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHH---TTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHH---CCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7479973998655784557505688998999997---8699999888629999999973897688999999999766477


Q ss_pred             ----CCCH-------------HHH-------------H-HHHHHHHCCCCCHHHHHHHHHHHH-H-----CCCC------
Q ss_conf             ----9994-------------789-------------9-999999928999999999999988-0-----1999------
Q 000793         1035 ----GGDL-------------SKL-------------Q-EIQEAVLQMSAPLSLIYELKNKMR-S-----SGMP------ 1071 (1282)
Q Consensus      1035 ----~~d~-------------~~L-------------~-~IR~~I~~~~lP~eL~~eL~~a~R-S-----Sg~s------ 1071 (1282)
                          .++.             ..+             . ..+.++....-++.........+. +     .+.+      
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  159 (405)
T d1h6za3          80 MGAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEE  159 (405)
T ss_dssp             HCCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTST
T ss_pred             HHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             66652354311555302321012210045566666545668999874255056689999999976301124630567889


Q ss_pred             -----------------------------------CCCC----CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC--
Q ss_conf             -----------------------------------9997----22999999999998169985899999981999977--
Q 000793         1072 -----------------------------------WPGD----EGWNLAWRSIKKVWASKWNERAFISCRKANLNHDN-- 1110 (1282)
Q Consensus      1072 -----------------------------------~aG~----~g~e~l~~AIK~VWASlys~RAi~yRr~~GI~~~~-- 1110 (1282)
                                                         ..|.    .+.+++..+|+.||+|+|++||..||...+++...  
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~~~  239 (405)
T d1h6za3         160 ALSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGT  239 (405)
T ss_dssp             TTHHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCCCC
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
T ss_conf             88888875165112457288888788899986654138754105467767888898762057237777876175411333


Q ss_pred             --CCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             --620779985106753299993699989986512213346665101345787715999057898983014565312456
Q 000793         1111 --LCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLY 1188 (1282)
Q Consensus      1111 --v~MAVLVQemV~ad~SGVlfT~nP~tgd~~~i~IEav~GLGEsLVsG~~Gtp~~f~v~K~~~~~~~vl~~~sK~i~~~ 1188 (1282)
                        +.|+|++|+|+.+..+||+||.||.+|+...+.+++++|+|+.+|+|.. +|+.|..++....   .     +     
T Consensus       240 ~~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~-~~~~~~~~~~~~~---~-----~-----  305 (405)
T d1h6za3         240 AVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIR-TPQQINHSLSLRW---A-----K-----  305 (405)
T ss_dssp             CEEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCS-CCEESSHHHHHHH---H-----T-----
T ss_pred             HHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCC-CCCEEEEECCCCH---H-----H-----
T ss_conf             111234542135665443334556777898753368646676233213765-7704664033101---0-----0-----


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             88607851599975200014897022241697421012358998879611014999999999999998609973599999
Q 000793         1189 GKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVL 1268 (1282)
Q Consensus      1189 ~~~~~i~rsdsnGedLe~~agaGl~~svp~~~~~~~~vdys~~plLtD~e~r~~~l~~La~ia~~IE~~fG~PQDIEwai 1268 (1282)
                                          ..+.      . ......++...+.+++++     +++|+++|..||++||+|||||||+
T Consensus       306 --------------------~~~~------~-~~~~~~~~~~~~~l~~e~-----~~~La~l~~~iE~~fg~PqDIEWAi  353 (405)
T d1h6za3         306 --------------------AHGV------G-EEERRKRYPSMEEAMPEN-----YRLLCDVRKRLENHYRDMQDLEFTV  353 (405)
T ss_dssp             --------------------TSSC------C-HHHHHHHSCCHHHHSHHH-----HHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred             --------------------CCCC------C-EECCCCCCCCHHHCCHHH-----HHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             --------------------1453------2-110466554555528799-----9999999999999829982049999


Q ss_pred             ECCEEEEEEECCC
Q ss_conf             8996999962158
Q 000793         1269 KDGLIYVVQARPQ 1281 (1282)
Q Consensus      1269 ~~gkLyILQsRPq 1281 (1282)
                      ++|+|||||+||.
T Consensus       354 ~dg~L~ILQaRPv  366 (405)
T d1h6za3         354 QDGRLWLLQCRNG  366 (405)
T ss_dssp             ETTEEEEEEEEEC
T ss_pred             ECCEEEEEECCCC
T ss_conf             8998999976678

PyMOL of d1h6za3

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure