Citrus Sinensis ID: 000799

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------128
MQSTNMDAELANSNYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRAETFTEREEDNSKEARYLVEEPLEKRESVASAGKSAESQPDASVTNFDLDLPETIMESDQEIRLAAIEENHPNIAFPSPTICFQEESASAVGSMSASTTGAKDVTGDDLLDGKSLKIKSADPMVKTVPVEGDLRTEKDDDEADSWEPETELETEESSKDAPESTSALMSDGPASLRSLSGKSDDGGSSVGSLSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGVDSKPASLKIDTSAKEFSGYIPTVGRVPDSLLNSSLYDSPKHRVQNSMDSSYGVQRGSSSLWSNQMQLLDAYAQNANHSVHDSGERRYSSLRIPSEASGERRYSSLRIPSEDSGERRYSSLRFPLEDSGERRYSSLHIPSEDSSERRYSSLHISSEDSSERRYSGLGIPSEDSGERRYSSLRTAPSSDSWNYQPATVHGCDLAHLSRMARDRNSDFLNGQRESPAPKSPSLGPTNYMDSVAFALGQKLQNGRSTVQASGFQQNLAVSRNAQLQSERSYFDVSSSGPADSVSIPSSSAKKYHSLPDISGLSVPLREQFMSNKGARVDGSIAYKPSIGRPSYEPSLYSNPGSRAGTTLAFDELSPSKIYRDTFPMQLSSGLDTGSLWSRQPFEQFGVVDKSKSSAISQEATSIADAEAKLLQSFRVCVVKILQLEGSEWLFRHNDGADEDLIDRVAAREKFLYEAETREKNQVVHMGESHYLTYERKLGSTLKNDEASFTNFMVSSVPHCGDGCIWKVDLILSFGVWCIHRILNLSLMESRPELWGKYTYVLNRLQVNF
cccccccHHccccccccHHHHHHHHcccHHHHHEHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccEEcccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHccccEEccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEHHHHHHHHHHHHcccccccccHHHHHHHHHccccc
ccccHHHcccccccccccHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHHEEccccEEEEHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccEHHHHHcHHHHHccEccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEEEEcccccEEEEEEcccccccccccccccccccccccccHHcccccccccccccccccccEEccccccccccccccHcHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHEEEccccccHHHcccHHHHHHcccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccEEEEccccHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHcccccccccccccccccHHHHcHHHHHHccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccHcHcccEEEEccccccccEEEEEEEEEHHHHHHHHHHHHHHHccccHHHcHHEEEHHccEccc
mqstnmdaelansnyqsgvlyrlvPAVLPVLLISigyvdpgkwaVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVlisqpeiplsvngmltkfsgdSAFSIMSLLGasmmphnfylhssivrrhqgqvniskgalchdHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEqvfrspvvPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFlrldipgwlhhATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIfgnsdwvgnlrwnsggtvalPFAVFLITTFTSLCLMLWLattplrsassrnnapdwsweFQRAETFTEREEDNSKEARYLVEEPLEKRESVASagksaesqpdasvtnfdldlpetiMESDQEIRLAAIEenhpniafpspticfqeesasavgsmsasttgakdvtgddlldgkslkiksadpmvktvpvegdlrtekdddeadswepeteleteesskdapestsalmsdgpaslrslsgksddggssvgSLSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLvlgvdskpaslkidtsakefsgyiptvgrvpdsllnsslydspkhrvqnsmdssygvqrgssslWSNQMQLLDAYAQnanhsvhdsgerrysslripseasgerrysslripsedsgerrysslrfpledsgerrysslhipsedsserrysslhissedsserrysglgipsedsgerrysslrtapssdswnyqpatvhgcdlahlsrmardrnsdflngqrespapkspslgptnyMDSVAFALGQklqngrstvqasgfqqnLAVSrnaqlqsersyfdvsssgpadsvsipsssakkyhslpdisglsvplreqfmsnkgarvdgsiaykpsigrpsyepslysnpgsragttlafdelspskiyrdtfpmqlssgldtgslwsrqpfeqfgvvdkskssaiSQEATSIADAEAKLLQSFRVCVVKILQLEgsewlfrhndgadedLIDRVAAREKFLYEAETREKNQVVHMGESHYLTYERKLgstlkndeaSFTNFmvssvphcgdgciwKVDLILSFGVWCIHRILNLslmesrpelwGKYTYVLNRLQVNF
MQSTNMDAELANSNYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLrsassrnnapdwsWEFQRAEtftereednskearylveepleKRESVAsagksaesqpdasvtnfdLDLPETIMESDQEIRLAAIEENHPNIAFPSPTICFQEESASAVGSMSAsttgakdvtgddlldgkslkiksadpmvktvpvegdlrtekdddeadswepeteleteesskdapestSALMSDGPASLRSlsgksddggsSVGSLSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGVDskpaslkidtsakefsgyiptvgrvpdSLLNSSLYDSPKHRVQNSMDSSYGVQRGSSSLWSNQMQLLDAYAQNANHsvhdsgerrysslripseasgerrysslripsedsgerrysslrfpledsgerrysslhipsedsserrysslhissedsserrysglgipsedsgerrYSSLRtapssdswnyqPATVHGCDLAHLSRMARDRNSDflngqrespapkspslgpTNYMDSVAFALGQKLQNGRSTVQASGFQQNLAVSRNAQLQSERSYFDVSSSGPADSVSipsssakkyhslpdISGLSVPLREQFMSNkgarvdgsiaykpsIGRPSYEPSLYSNPGSRAGTTLAFDELSPSKIYRDTFPMQLSSGLDTGSLWSRQPFEQFGVVDKSKSSAISQEATSIADAEAKLLQSFRVCVVKILQLEGsewlfrhndgadedlIDRVAAREKFLYeaetreknqvvhmgESHYLTYERKLGSTLKNDEASFTNFMVSSVPHCGDGCIWKVDLILSFGVWCIHRILNLslmesrpelwGKYTYVLNRLQVNF
MQSTNMDAELANSNYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSpvvpfafvlvlffSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRAETFTEREEDNSKEARYLVEEPLEKRESVASAGKSAESQPDASVTNFDLDLPETIMESDQEIRLAAIEENHPNIAFPSPTICFQEESASAVGSMSASTTGAKDVTGDDLLDGKSLKIKSADPMVKTVPVEGDLRTEKDDDEADSWepeteleteeSSKDAPESTSALMSDGPAslrslsgksddggssvgslsrlvglgRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGVDSKPASLKIDTSAKEFSGYIPTVGRVPDSLLNSSLYDSPKHRVQNSMDSSYGVQRGSSSLWSNQMQLLDAYAQNANHSVHDSGERRYSSLRIPSEASGERRYSSLRIPSEDSGERRYSSLRFPLEDSGERRYSSLHIPSEDSSERRYsslhissedssERRYSGLGIPSEDSGERRYSSLRTAPSSDSWNYQPATVHGCDLAHLSRMARDRNSDFLNGQRESPAPKSPSLGPTNYMDSVAFALGQKLQNGRSTVQASGFQQNLAVSRNAQLQSERSYFDVSSSGPADSVSIPSSSAKKYHSLPDISGLSVPLREQFMSNKGARVDGSIAYKPSIGRPSYEPSLYSNPGSRAGTTLAFDELSPSKIYRDTFPMQLSSGLDTGSLWSRQPFEQFGVVDKSKSSAISQEATSIADAEAKLLQSFRVCVVKILQLEGSEWLFRHNDGADEDLIDRVAAREKFLYEAETREKNQVVHMGESHYLTYERKLGSTLKNDEASFTNFMVSSVPHCGDGCIWKVDLILSFGVWCIHRILNLSLMESRPELWGKYTYVLNRLQVNF
**************YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPL*************W********************************************************************AAI******IAFPSPTICF**************************************************************************************************************RLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGVDSK***LKIDTSAKEFSGYIPTVGRV***********************************************************************************************************************************************************************ATVHGCDLA******************************************************************************************************************************************************************IYRDTF***********SLWS***FEQFG******************DAEAKLLQSFRVCVVKILQLEGSEWLFRHNDGADEDLIDRVAAREKFLYEAETREKNQVVHMGESHYLTYERKLGSTLKNDEASFTNFMVSSVPHCGDGCIWKVDLILSFGVWCIHRILNLSLMESRPELWGKYTYVLNRLQ***
*******************LYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVR*********KGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRNN*****************************************************VTNFDLDLPETIM********************************************AKDVT**********************************DE*DSWE*************************************************VGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGVDSKP********************************************************************************RRYSSLRIPSEASGERRYSSLRIPSE************************************************************************************TVHGCDL***********************************************************************************************KKYHSLPDI***********************************************************************************F********************IADAEAKLLQSFRVCVVKILQLEGSEWLFRHNDGADEDLIDRVAAREKFLYEAETRE***************************ASFTNFMVSSVPHCGDGCIWKVDLILSFGVWCIHRILNLSLMESRPELWGKYTYVLNRLQVN*
********ELANSNYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRAE**********KEARYLVEE*********************SVTNFDLDLPETIMESDQEIRLAAIEENHPNIAFPSPTICFQEE*************GAKDVTGDDLLDGKSLKIKSADPMVKTVPVEGDL***************************************ASLR***************LSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGVDSKPASLKIDTSAKEFSGYIPTVGRVPDSLLNSSLYDSPKHRVQNSMDSSYGVQRGSSSLWSNQMQLLDAYAQNA***********YSSLRIPSEASGERRYSSLRIPSEDSGERRYSSLRFPLEDSGERRYSSLHI*************************SGLGIPS******************SWNYQPATVHGCDLAHLSRMARDRNSD*************PSLGPTNYMDSVAFALGQKLQNGRSTVQASGFQQNLAVSRNAQLQS**************************HSLPDISGLSVPLREQFMSNKGARVDGSIAYKPSIGRPSYEPSLYSNPGSRAGTTLAFDELSPSKIYRDTFPMQLSSGLDTGSLWSRQPFEQFG*************ATSIADAEAKLLQSFRVCVVKILQLEGSEWLFRHNDGADEDLIDRVAAREKFLYEAETREKNQVVHMGESHYLTYERKLGSTLKNDEASFTNFMVSSVPHCGDGCIWKVDLILSFGVWCIHRILNLSLMESRPELWGKYTYVLNRLQVNF
****************SGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRN******WE**********************************************VTNFDLDLPETIMESDQEIRLAAI**********************************KDVTGDDLLDGKSLKIKSADPMVKTVPVEGD**********************************************************SLSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGVDSKPASLKID*SAKEFSGYIPT*******************************************QLLDAYAQNANHSVHDSGERRYSSLRIPSEASGERRYSSLRIPSEDSGERRYSSLRFPL****************************************************************WNYQPATVHGCDLAHLSRMARDRNSDFLNGQRESPAPKSPSLGPTNYMDSVAFALGQKLQ***********************QS*****DVSSSGPADSVSIPSSS*KKYHSLPDISGLSVPLREQFMSNKG**********PSIGRPSYEP****************DELSPSKIYR****************************************TSIADAEAKLLQSFRVCVVKILQLEGSEWLFRHNDGADEDLIDRVAAREKFLYEAETREKNQVVHMGESHY**********LKNDEASFTNFMVSSVPHCGDGCIWKVDLILSFGVWCIHRILNLSLMESRPELWGKYTYVLNRLQVNF
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MQSTNMDAELANSNYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRAETFTEREEDNSKEARYLVEEPLEKRESVASAGKSAESQPDASVTNFDLDLPETIMESDQEIRLAAIEENHPNIAFPSPTICFQEESASAVGSMSASTTGAKDVTGDDLLDGKSLKIKSADPMVKTVPVEGDLRTEKDDDEADSWEPETELETEESSKDAPESTSALMSDGPASLRSLSGKSDDGGSSVGSLSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGVDSKPASLKIDTSAKEFSGYIPTVGRVPDSLLNSSLYDSPKHRVQNSMDSSYGVQRGSSSLWSNQMQLLDAYAQNANHSVHDSGERRYSSLRIPSEASGERRYSSLRIPSEDSGERRYSSLRFPLEDSGERRYSSLHIPSEDSSERRYSSLHISSEDSSERRYSGLGIPSEDSGERRYSSLRTAPSSDSWNYQPATVHGCDLAHLSRMARDRNSDFLNGQRESPAPKSPSLGPTNYMDSVAFALGQKLQNGRSTVQASGFQQNLAVSRNAQLQSERSYFDVSSSGPADSVSIPSSSAKKYHSLPDISGLSVPLREQFMSNKGARVDGSIAYKPSIGRPSYEPSLYSNPGSRAGTTLAFDELSPSKIYRDTFPMQLSSGLDTGSLWSRQPFEQFGVVDKSKSSAISQEATSIADAEAKLLQSFRVCVVKILQLEGSEWLFRHNDGADEDLIDRVAAREKFLYEAETREKNQVVHMGESHYLTYERKLGSTLKNDEASFTNFMVSSVPHCGDGCIWKVDLILSFGVWCIHRILNLSLMESRPELWGKYTYVLNRLQVNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1279 2.2.26 [Sep-21-2011]
Q9S8141294 Ethylene-insensitive prot yes no 0.627 0.619 0.540 0.0
Q553K4629 Natural resistance-associ yes no 0.281 0.572 0.331 1e-47
P65545456 Divalent metal cation tra yes no 0.302 0.848 0.306 2e-42
P65544456 Divalent metal cation tra yes no 0.302 0.848 0.306 2e-42
Q98I99454 Divalent metal cation tra yes no 0.281 0.792 0.314 7e-42
Q8ZSB0442 Divalent metal cation tra yes no 0.307 0.889 0.294 3e-40
Q9RPF3439 Divalent metal cation tra yes no 0.286 0.835 0.337 8e-40
Q92BT1448 Divalent metal cation tra yes no 0.279 0.796 0.315 9e-40
Q8Y773448 Divalent metal cation tra yes no 0.279 0.796 0.315 9e-40
B8DE85448 Divalent metal cation tra yes no 0.279 0.796 0.315 9e-40
>sp|Q9S814|EIN2_ARATH Ethylene-insensitive protein 2 OS=Arabidopsis thaliana GN=EIN2 PE=1 SV=1 Back     alignment and function desciption
 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/825 (54%), Positives = 580/825 (70%), Gaps = 23/825 (2%)

Query: 6   MDAELANSNYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN 65
           M+AE+ N   Q G + R+VPA+LPVLL+S+GY+DPGKW   IEGGA FG+DLVA+ L+FN
Sbjct: 1   MEAEIVNVRPQLGFIQRMVPALLPVLLVSVGYIDPGKWVANIEGGARFGYDLVAITLLFN 60

Query: 66  FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGL 125
           FAAI CQY++ARI+VVTGK LAQIC EEYDKWTC+F+G+Q E S ILLDLTMV+G+AH L
Sbjct: 61  FAAILCQYVAARISVVTGKHLAQICNEEYDKWTCMFLGIQAEFSAILLDLTMVVGVAHAL 120

Query: 126 NLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEI 185
           NLL GVELST VFLAA DA LFP FA  LEN  A  + I +AG++LL YV GVL+SQ EI
Sbjct: 121 NLLFGVELSTGVFLAAMDAFLFPVFASFLENGMANTVSIYSAGLVLLLYVSGVLLSQSEI 180

Query: 186 PLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFA 245
           PLS+NG+LT+ +G+SAF++M LLGAS++PHNFY+HS          ++ K +LC DH FA
Sbjct: 181 PLSMNGVLTRLNGESAFALMGLLGASIVPHNFYIHSYFAGESTSSSDVDKSSLCQDHLFA 240

Query: 246 ILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFS 305
           I  +FSG+ +VNYVLMN+AAN+F+STGLV+LTF DA+SLMEQVF SP++P  F+++LFFS
Sbjct: 241 IFGVFSGLSLVNYVLMNAAANVFHSTGLVVLTFHDALSLMEQVFMSPLIPVVFLMLLFFS 300

Query: 306 NQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFT 365
           +QI A+ W   G+VVL DFL+++IP WLH ATIRI+++ PALYCVWTSGA+G+YQLLIFT
Sbjct: 301 SQITALAWAFGGEVVLHDFLKIEIPAWLHRATIRILAVAPALYCVWTSGADGIYQLLIFT 360

Query: 366 QVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGN 425
           QV+VA+MLP SVIPLFR+ASSRQIMGVHKI Q  EFL L TF+G LGL ++F+VEM+FG+
Sbjct: 361 QVLVAMMLPCSVIPLFRIASSRQIMGVHKIPQVGEFLALTTFLGFLGLNVVFVVEMVFGS 420

Query: 426 SDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRA 485
           SDW G LRWN+    ++ +   L+++  SLCL+LWLA TPL+SAS+R  A  W+ + Q A
Sbjct: 421 SDWAGGLRWNTVMGTSIQYTTLLVSSCASLCLILWLAATPLKSASNRAEAQIWNMDAQNA 480

Query: 486 ETFTEREEDNSKEARYLVEEPLEKRESVASAGKSAESQPD-ASVTNFDLDLPETIMESDQ 544
            ++   +E+  +       E     ES+       + Q D  SVT+   DLPE I+ +DQ
Sbjct: 481 LSYPSVQEEEIERTETRRNE----DESIVRLESRVKDQLDTTSVTSSVYDLPENILMTDQ 536

Query: 545 EIRLAAIEENHPNIAFPSPTICFQEESASAVGSMSASTTGAKDVTGDDLL-DGKSLKIKS 603
           EIR +  EE   ++ + +  +   +E +         +T   +V+  DL+ + K  KI+ 
Sbjct: 537 EIRSSPPEERELDVKYSTSQVSSLKEDSDVKEQSVLQSTVVNEVSDKDLIVETKMAKIEP 596

Query: 604 ADPMVKTVPVEGDLRTEKDDDEADSWEPETELETEESSKDAPESTSALMSDGPASLRSLS 663
             P+ K V +E + +  + D E  SW      ETEE++K AP S   + SDGP S RSLS
Sbjct: 597 MSPVEKIVSMENNSKFIEKDVEGVSW------ETEEATKAAPTSNFTVGSDGPPSFRSLS 650

Query: 664 GKSDDGGSSVGSLSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGV 723
           G+     S  GSLSRL GLGRAARR L+ +LDEFWG LYD+HGQ+  EARAKKLD + G 
Sbjct: 651 GEGG---SGTGSLSRLQGLGRAARRHLSAILDEFWGHLYDFHGQLVAEARAKKLDQLFGT 707

Query: 724 DSKPA-SLKIDTSAKEF-SGYI--PTVGRVPDSLLNSSLYDSPK-HRVQNSMDSSYGVQR 778
           D K A S+K D+  K+  SGY   PT   + DS + SSLYDS K  R   S+DS YG+QR
Sbjct: 708 DQKSASSMKADSFGKDISSGYCMSPTAKGM-DSQMTSSLYDSLKQQRTPGSIDSLYGLQR 766

Query: 779 GSS-SLWSNQMQLLDAYAQNA-NHSVHDSGERRYSSLRIPSEASG 821
           GSS S   N+MQ+L AY     N++ ++  ERRYSSLR PS + G
Sbjct: 767 GSSPSPLVNRMQMLGAYGNTTNNNNAYELSERRYSSLRAPSSSEG 811
Central factor in signaling pathways regulated by ethylene (ET), and involved in various processes including development, plant defense, senescence, nucleotide sugar flux, and tropisms. Necessary for ethylene-mediated gene regulation, and for the induction of some genes by ozone. Acts downstream of ET receptors, and upstream of ethylene regulated transcription factors. Required for cytokinin-mediated processes. Seems to be implicated in cross-talk between ET, jasmonate and other pathways. Probably not involved in iron uptake.
Arabidopsis thaliana (taxid: 3702)
>sp|Q553K4|NRAM2_DICDI Natural resistance-associated macrophage protein 2 homolog OS=Dictyostelium discoideum GN=nramp2 PE=3 SV=1 Back     alignment and function description
>sp|P65545|MNTH_BRUSU Divalent metal cation transporter MntH OS=Brucella suis biovar 1 (strain 1330) GN=mntH PE=3 SV=1 Back     alignment and function description
>sp|P65544|MNTH_BRUME Divalent metal cation transporter MntH OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=mntH PE=3 SV=1 Back     alignment and function description
>sp|Q98I99|MNTH_RHILO Divalent metal cation transporter MntH OS=Rhizobium loti (strain MAFF303099) GN=mntH PE=3 SV=1 Back     alignment and function description
>sp|Q8ZSB0|MNTH_NOSS1 Divalent metal cation transporter MntH OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=mntH PE=3 SV=1 Back     alignment and function description
>sp|Q9RPF3|MNTH1_PSEAE Divalent metal cation transporter MntH 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mntH1 PE=3 SV=2 Back     alignment and function description
>sp|Q92BT1|MNTH_LISIN Divalent metal cation transporter MntH OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=mntH PE=3 SV=1 Back     alignment and function description
>sp|Q8Y773|MNTH_LISMO Divalent metal cation transporter MntH OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=mntH PE=3 SV=1 Back     alignment and function description
>sp|B8DE85|MNTH_LISMH Divalent metal cation transporter MntH OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=mntH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1279
2254400091318 PREDICTED: ethylene-insensitive protein 0.632 0.613 0.651 0.0
2240687291310 EIN2 -like protein, nramp transporter [P 0.627 0.612 0.649 0.0
2241387101259 EIN2 -like protein, nramp transporter [P 0.650 0.660 0.628 0.0
1477831571346 hypothetical protein VITISV_043425 [Viti 0.632 0.601 0.629 0.0
2555569781290 ethylene insensitive protein, putative [ 0.627 0.622 0.619 0.0
3565482911313 PREDICTED: ethylene-insensitive protein 0.627 0.610 0.579 0.0
2667061861304 ethylene insensitive 2 [Prunus persica] 0.627 0.615 0.616 0.0
356536969 1406 PREDICTED: ethylene-insensitive protein 0.627 0.570 0.568 0.0
380453871310 EIN2 [Petunia x hybrida] 0.628 0.613 0.548 0.0
3505367371316 ethylene signaling protein [Solanum lyco 0.627 0.609 0.543 0.0
>gi|225440009|ref|XP_002276399.1| PREDICTED: ethylene-insensitive protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/823 (65%), Positives = 652/823 (79%), Gaps = 14/823 (1%)

Query: 6   MDAELANSNYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN 65
           M+AE++N+N+   V ++ +PAV P+LLISIGYVDPGKWA ++EGGA FGFDLVALMLVFN
Sbjct: 1   MEAEISNANHMPDVRHQFLPAVFPMLLISIGYVDPGKWAAVVEGGARFGFDLVALMLVFN 60

Query: 66  FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGL 125
           FAA+ CQ L+ARI VVTG+DLAQIC +EYDK TC+ +G+QTELS+I LDLTM+LGIAHGL
Sbjct: 61  FAAVLCQCLAARIGVVTGRDLAQICSDEYDKSTCMLLGIQTELSMIALDLTMILGIAHGL 120

Query: 126 NLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEI 185
           +L+ G +L +CVFL A DA+LFP FA  LEN KAK L I   G +LL Y LGVLIS PEI
Sbjct: 121 HLMFGADLFSCVFLTAIDAVLFPLFATLLENGKAKFLCIWMVGFVLLCYALGVLISLPEI 180

Query: 186 PLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFA 245
           PLS+NGM TKFSG+SAF++MSLLGA++MPHNFYLHSSIV+RHQG  N+SK ALCH H FA
Sbjct: 181 PLSINGMPTKFSGESAFALMSLLGANIMPHNFYLHSSIVKRHQGLPNVSKAALCHSHIFA 240

Query: 246 ILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFS 305
           IL +FSGI+++NYVLMN+AAN+FYSTGLVLLTFQDAMSLM+QVFRSP+ P  F+LVLF  
Sbjct: 241 ILFVFSGIFLLNYVLMNAAANVFYSTGLVLLTFQDAMSLMDQVFRSPIAPVFFLLVLFLC 300

Query: 306 NQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFT 365
           NQI A+ W+L GQVVL   LR+DIPGWLHHATIRII+I+PALYCV TSGAEG YQLL+F 
Sbjct: 301 NQITALTWDLGGQVVLHHLLRMDIPGWLHHATIRIIAIIPALYCVRTSGAEGAYQLLLFM 360

Query: 366 QVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGN 425
           QVMVA+ LPSSVIPL RVASSR IMGV+K+SQ+ EFL ++  +GMLGLK+IF+VEMIFGN
Sbjct: 361 QVMVAMFLPSSVIPLVRVASSRSIMGVYKVSQFVEFLAVVALVGMLGLKIIFVVEMIFGN 420

Query: 426 SDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRA 485
           SDWVGNLRWN G T +  + + L T  TSLC MLWLA TPL+SAS+R++A  W+W+  +A
Sbjct: 421 SDWVGNLRWNIGNTTSGSYFLLLTTACTSLCFMLWLAATPLKSASARSDAQAWNWDSPKA 480

Query: 486 --ETFTEREEDNSKEARYLVEEPLEKRESVASAGKSAESQPDASVTNFDLDLPETIMESD 543
             E   EREE +  ++RY  E+P+ K+E   +  KS  S  D  V NFD DLPETIM+SD
Sbjct: 481 VTEPSFEREEIDFMDSRYHGEDPVHKQEPAPALEKSFGSHLDMPVENFDFDLPETIMDSD 540

Query: 544 QEIRLAAIEENHPNIAFPSPTICFQEESASAVGSMSASTTGAKDVTGDDLLDGKSLKIKS 603
               L  IEEN  NI FPS  IC  E+  S V S+S  TT   +V+  DLLD  +LKI+S
Sbjct: 541 HGPILTTIEENCSNITFPSSPICHSEKPESTVESVSP-TTVVNEVSHVDLLDTSTLKIES 599

Query: 604 ADPMVKTVPVEGDLRTEKDDDEADSWEPETELETEESSKDAPESTSALMSDGPASLRSLS 663
            DP+ KTV +EGD + EKDD+E D+WEP      EE+SK+   S+ +L S+GP S RSLS
Sbjct: 600 VDPVEKTVGIEGDSQIEKDDEEGDAWEP------EEASKEISGSSPSLTSEGPGSFRSLS 653

Query: 664 GKSDDGGSSVGSLSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAKKLDLVLGV 723
           GKSD+GG+  GSLSRL GLGRAARRQLA VLDEFWGQLYD+HGQ T EA+AKKLDL+LG+
Sbjct: 654 GKSDEGGNGTGSLSRLAGLGRAARRQLAAVLDEFWGQLYDFHGQATPEAKAKKLDLLLGL 713

Query: 724 DSKPA--SLKIDTSAKEFSGYIPTV-GRVPDSLLNSSLYDSPKHR-VQNSMDSSY-GVQR 778
           DSKPA  SLK+D+  KEF+GY P+V GR  DSL++SSLYDSP+ + +Q+SMDSSY GVQR
Sbjct: 714 DSKPAISSLKVDSIEKEFTGYFPSVGGRGSDSLISSSLYDSPRQQTMQSSMDSSYRGVQR 773

Query: 779 GSSSLWSNQMQLLDAYAQNANHSVHDSGERRYSSLRIPSEASG 821
           GSSS WSN +Q+LDAY QN++ +V D+GERRYSSLR+P  + G
Sbjct: 774 GSSSFWSNNIQMLDAYVQNSSRNVLDAGERRYSSLRLPPSSDG 816

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224068729|ref|XP_002326185.1| EIN2 -like protein, nramp transporter [Populus trichocarpa] gi|222833378|gb|EEE71855.1| EIN2 -like protein, nramp transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224138710|ref|XP_002322882.1| EIN2 -like protein, nramp transporter [Populus trichocarpa] gi|222867512|gb|EEF04643.1| EIN2 -like protein, nramp transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147783157|emb|CAN66374.1| hypothetical protein VITISV_043425 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556978|ref|XP_002519522.1| ethylene insensitive protein, putative [Ricinus communis] gi|223541385|gb|EEF42936.1| ethylene insensitive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356548291|ref|XP_003542536.1| PREDICTED: ethylene-insensitive protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|266706186|gb|ACY78397.1| ethylene insensitive 2 [Prunus persica] Back     alignment and taxonomy information
>gi|356536969|ref|XP_003537004.1| PREDICTED: ethylene-insensitive protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|38045387|gb|AAR08678.1| EIN2 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|350536737|ref|NP_001234518.1| ethylene signaling protein [Solanum lycopersicum] gi|77747170|gb|AAS67011.2| ethylene signaling protein [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S814EIN2_ARATHNo assigned EC number0.54060.62700.6197yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1279
pfam01566364 pfam01566, Nramp, Natural resistance-associated ma 2e-90
PRK00701439 PRK00701, PRK00701, manganese transport protein Mn 3e-69
COG1914416 COG1914, MntH, Mn2+ and Fe2+ transporters of the N 6e-58
TIGR01197390 TIGR01197, nramp, NRAMP (natural resistance-associ 1e-53
>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein Back     alignment and domain information 
 Score =  296 bits (760), Expect = 2e-90
 Identities = 107/368 (29%), Positives = 182/368 (49%), Gaps = 19/368 (5%)

Query: 43  WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102
            A  I+ GA FG+ L+ ++L+ N  AI  Q LSAR+ +VTGK LA++  E + +     +
Sbjct: 1   IATNIQAGARFGYSLLWVLLLSNLMAIVLQELSARLGLVTGKGLAELIRERFGRPVGWLL 60

Query: 103 GVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKA--K 160
            +  EL+    DL   +G A  LNLL G+ L   V + A   +L  F       Y+   +
Sbjct: 61  WILAELANAATDLAEFIGGAIALNLLFGIPLYIGVVITAVLVLLLLFLQRG--GYRRLER 118

Query: 161 LLWICTAGIILLSYVLGVLISQPEIPLSVNGMLT-KFSG-DSAFSIMSLLGASMMPHNFY 218
           ++ I    +I LS++  + + +P+      G++     G  S    +++LGA++MPHN +
Sbjct: 119 VI-IALVAVIALSFIAELFLVKPDWGEVAAGLVVPSLPGSGSLLLAIAILGATVMPHNLF 177

Query: 219 LHSSIV--RRHQGQVNISKGALCHDHFFAIL-CIFSGIYMVNYVLMNSAANLFYSTG-LV 274
           LHSS+V  R      + ++ AL +     I+  + +G+  +N  ++  AA + +  G   
Sbjct: 178 LHSSLVQERGWTIDDDAARRALRYARIDTIIALVLAGL--INAAILIVAAAVLHGAGGTD 235

Query: 275 LLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLH 334
           + T  DA + +E +         F L L  +     +   L+G  V++ FL   IP WL 
Sbjct: 236 VTTAADAAAALEPLLGPKAASVLFALGLLAAGLSSTITGTLAGAYVMEGFLGWRIPLWLR 295

Query: 335 HATIRIISIVPALYCVWTSGAEGV------YQLLIFTQVMVAIMLPSSVIPLFRVASSRQ 388
               R  +  PAL  +   GA          QLL+ +QV+++++LP ++IPL  + SSR+
Sbjct: 296 RLITRAKAFYPALAVILLGGALLALLGGSPVQLLVLSQVLLSLLLPFALIPLLLLTSSRK 355

Query: 389 IMGVHKIS 396
           +MG    S
Sbjct: 356 LMGEFVNS 363

The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations. Length = 364
>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed Back     alignment and domain information
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1279
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 100.0
PRK00701439 manganese transport protein MntH; Reviewed 100.0
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 100.0
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 100.0
PF01566358 Nramp: Natural resistance-associated macrophage pr 100.0
TIGR00813407 sss transporter, SSS family. have different number 99.05
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 99.05
PRK15419502 proline:sodium symporter PutP; Provisional 99.01
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.97
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.95
PRK12488549 acetate permease; Provisional 98.95
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.91
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.91
PRK09395551 actP acetate permease; Provisional 98.9
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.88
PRK15132403 tyrosine transporter TyrP; Provisional 98.67
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 98.64
COG1457442 CodB Purine-cytosine permease and related proteins 98.6
PRK10483414 tryptophan permease; Provisional 98.59
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.57
PRK15049499 L-asparagine permease; Provisional 98.55
PRK10484523 putative transporter; Provisional 98.5
PRK09664415 tryptophan permease TnaB; Provisional 98.5
PRK13629443 threonine/serine transporter TdcC; Provisional 98.49
PRK11017404 codB cytosine permease; Provisional 98.46
PRK10249458 phenylalanine transporter; Provisional 98.38
TIGR00837381 araaP aromatic amino acid transport protein. aroma 98.37
PRK11387471 S-methylmethionine transporter; Provisional 98.35
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.35
PRK10238456 aromatic amino acid transporter; Provisional 98.34
PRK11375484 allantoin permease; Provisional 98.3
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.28
TIGR00930953 2a30 K-Cl cotransporter. 98.27
TIGR00814397 stp serine transporter. The HAAAP family includes 98.26
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.21
COG3949349 Uncharacterized membrane protein [Function unknown 98.18
COG4147529 DhlC Predicted symporter [General function predict 98.16
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.15
PRK10580457 proY putative proline-specific permease; Provision 98.14
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.14
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.11
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.11
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.09
PRK10746461 putative transport protein YifK; Provisional 98.08
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.05
COG0814415 SdaC Amino acid permeases [Amino acid transport an 98.0
PRK11021410 putative transporter; Provisional 97.99
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.94
TIGR00909429 2A0306 amino acid transporter. 97.93
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.92
TIGR00907482 2A0304 amino acid permease (GABA permease). 97.92
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.91
TIGR00913478 2A0310 amino acid permease (yeast). 97.87
PRK10644445 arginine:agmatin antiporter; Provisional 97.84
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.82
TIGR00911501 2A0308 L-type amino acid transporter. 97.76
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 97.75
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 97.74
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 97.73
PRK15433439 branched-chain amino acid transport system 2 carri 97.63
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 97.54
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 97.52
PRK10197446 gamma-aminobutyrate transporter; Provisional 97.5
PRK11357445 frlA putative fructoselysine transporter; Provisio 97.41
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 97.35
PRK10655438 potE putrescine transporter; Provisional 97.15
PRK10836489 lysine transporter; Provisional 97.08
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.01
KOG1289550 consensus Amino acid transporters [Amino acid tran 96.97
TIGR00906557 2A0303 cationic amino acid transport permease. 96.87
TIGR00912359 2A0309 spore germination protein (amino acid perme 96.63
COG0531466 PotE Amino acid transporters [Amino acid transport 96.61
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 96.56
PLN03074473 auxin influx permease; Provisional 96.56
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 96.21
PRK15015701 carbon starvation protein A; Provisional 96.13
PRK09928679 choline transport protein BetT; Provisional 96.01
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 95.97
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 95.95
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 95.86
PRK15238496 inner membrane transporter YjeM; Provisional 95.72
KOG1286554 consensus Amino acid transporters [Amino acid tran 95.68
KOG1303437 consensus Amino acid transporters [Amino acid tran 95.32
COG0833541 LysP Amino acid transporters [Amino acid transport 95.25
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 95.09
PF03845320 Spore_permease: Spore germination protein; InterPr 94.89
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 94.38
COG1966575 CstA Carbon starvation protein, predicted membrane 94.19
KOG1288945 consensus Amino acid transporters [Amino acid tran 93.3
PTZ00206467 amino acid transporter; Provisional 93.27
KOG2349585 consensus Na+:iodide/myo-inositol/multivitamin sym 93.23
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 92.74
KOG3660629 consensus Sodium-neurotransmitter symporter [Signa 91.5
COG1292537 BetT Choline-glycine betaine transporter [Cell env 89.26
TIGR00844810 c_cpa1 na(+)/h(+) antiporter. This model is specif 87.42
PRK13108460 prolipoprotein diacylglyceryl transferase; Reviewe 84.64
TIGR00842453 bcct choline/carnitine/betaine transport. properti 84.16
COG3949349 Uncharacterized membrane protein [Function unknown 82.34
PLN00151852 potassium transporter; Provisional 81.35
PLN00150779 potassium ion transporter family protein; Provisio 81.3
KOG1304449 consensus Amino acid transporters [Amino acid tran 80.98
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-99  Score=858.78  Aligned_cols=458  Identities=30%  Similarity=0.447  Sum_probs=411.9

Q ss_pred             CCCchhHHHHHhhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhh
Q 000799           14 NYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEE   93 (1279)
Q Consensus        14 ~~~~~~~rklLa~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~   93 (1279)
                      ..++..|||+|+|+|||||||+||+||||++|++||||+|||+|||++++++++++++|+++||+|+||||||||+||++
T Consensus        19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~   98 (503)
T KOG1291|consen   19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE   98 (503)
T ss_pred             CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            35677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 000799           94 YDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLS  173 (1279)
Q Consensus        94 Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~La  173 (1279)
                      ||||+++.||+++|+|+|++|++||||+|+|+|+|+++|+|+||+||++|+|+++++.+| |.||+|.++++++..|++|
T Consensus        99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~ky-GiRklE~~~~~Li~~mai~  177 (503)
T KOG1291|consen   99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKY-GIRKLEAFFAFLIVTMAIS  177 (503)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999876 9999999999999999999


Q ss_pred             HHHHHHhhCCChhhhc-cccccccC---CChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchh---hhhHHHHHH
Q 000799          174 YVLGVLISQPEIPLSV-NGMLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGA---LCHDHFFAI  246 (1279)
Q Consensus       174 FVi~l~is~Pd~~eV~-~GLVP~lp---~~sl~~aVALIGATIMPhnlyLHSaLVqsR~~~~d~~~~a---~r~D~~~gi  246 (1279)
                      |.+++..++|+.++++ +|++|+++   ++.+++++|++||+|||||+|+||++||+|+.+++.+++.   .++....+ 
T Consensus       178 F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies-  256 (503)
T KOG1291|consen  178 FGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES-  256 (503)
T ss_pred             HheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH-
Confidence            9999999999998765 66789987   6789999999999999999999999999999887543322   11111112 


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhhccCC-cccc-------------CHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHH
Q 000799          247 LCIFSGIYMVNYVLMNSA-ANLFYSTG-LVLL-------------TFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAV  311 (1279)
Q Consensus       247 l~il~gsfLINlaImiva-AavfygtG-~~V~-------------tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTI  311 (1279)
                      .+.+.++|.||.+++.++ |+.||++- ..+.             +...+..+|...+| +++.++|++|||+|||||+|
T Consensus       257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g-~~a~~Ifai~lLasGQSsti  335 (503)
T KOG1291|consen  257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFG-PAALYIFAIGLLASGQSSTI  335 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhc-cHHHHHHHHHHHHCCCcccc
Confidence            123456899999999999 98888753 2222             24445667888787 99999999999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000799          312 NWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMG  391 (1279)
Q Consensus       312 TgTlAGq~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMG  391 (1279)
                      ||||+||+|||||++|++++|.||++||.+||+|+++|+++.|.+++.+|++++||+++++|||+++|++.|+++|+|||
T Consensus       336 tgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~  415 (503)
T KOG1291|consen  336 TGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMG  415 (503)
T ss_pred             eeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 000799          392 VHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASS  471 (1279)
Q Consensus       392 e~rnS~~lnILawli~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v~~~~~~~yl~f~lyL~~~pl~s~s~  471 (1279)
                      .|+|+...+.++|.+.++++.+|+|++++++..       +    ....+..+.++.+.+++|++|++||+.+|++....
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~-------~----~~~~~~~~~~~~~~~~~y~~~i~yL~~~~l~~~~~  484 (503)
T KOG1291|consen  416 VFKNGLVTEELTWTVAALVLGINGYFLVSFFWS-------L----VGKHSKIVVTVNVWTLAYLAFILYLAATCLNAYSI  484 (503)
T ss_pred             hhccCccceeeeehheeeeeeeeeEEeeeehhh-------h----cCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999866531       1    12122445566778899999999999999999999


Q ss_pred             cCCCCCCccccccc
Q 000799          472 RNNAPDWSWEFQRA  485 (1279)
Q Consensus       472 ~~~~~~~~~~~~~~  485 (1279)
                      ..+++.|+++.++.
T Consensus       485 ~~~~~~~~~~~~~~  498 (503)
T KOG1291|consen  485 ISLAMSSSMHAQNA  498 (503)
T ss_pred             hhhhcccchhcccc
Confidence            99999999999885

>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1279
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 2e-04
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 44/333 (13%), Positives = 89/333 (26%), Gaps = 54/333 (16%)

Query: 158 KAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNF 217
           K KL W  T  +++L Y +   I        +  +   +   +A  I +L+   + P   
Sbjct: 23  KEKLKW--TGIVLVL-YFIMGCIDVYTAGAQIPAIFEFWQTITASRIGTLITLGIGP--- 76

Query: 218 YLHSSIV-----------RRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAAN 266
            + + I+                  N +    C      I+C    +  V          
Sbjct: 77  IVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTP 136

Query: 267 LFYSTGLVLLTFQDAMSLM--EQV----FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVV 320
           L     ++ + F   + +   E V      S +  F    V   S  I        G + 
Sbjct: 137 LLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGV---SQTIFVGALGPEGYLW 193

Query: 321 LQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLP-----S 375
                 +     + +    I +I+  L  V+         L            P      
Sbjct: 194 KFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYV 253

Query: 376 SVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNL--- 432
           S IP+   A+                   I   G+   ++   +   +     V  +   
Sbjct: 254 SNIPVILAAA---------------LFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYY 298

Query: 433 -----RWNSGGTVALPFAVFLITTFTSLCLMLW 460
                  +S  +  +   V++I    +  +   
Sbjct: 299 LSTPYGLSSVISDPIHAIVYMIAMIITCVMFGI 331

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1279
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 87.47
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.47  E-value=0.62  Score=21.12  Aligned_cols=123  Identities=13%  Similarity=0.058  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             1059999999999987687898897799-999754179867732778999999999999998618523799999999999
Q 000799          291 SPVVPFAFVLVLFFSNQIIAVNWNLSGQ-VVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV  369 (1279)
Q Consensus       291 g~~A~iIFaIGLLAAGqSSTITgTlAGq-~VmeGFL~lr~~~w~rrLitRlIAIIPALiVai~~G~~gl~~LLIisQVI~  369 (1279)
                      +..-..+|-+.++.+|.+|.+...-.-- .+.+.+ +  ..+++...++.++.. -...+..+ ...+ ..+++.  ...
T Consensus       333 ~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~-~--~~r~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~D~--~~~  404 (509)
T d2a65a1         333 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-K--LSRKHAVLWTAAIVF-FSAHLVMF-LNKS-LDEMDF--WAG  404 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C--CCHHHHHHHHHHHHH-HHHHHHHH-BTTH-HHHHHH--HTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC-C--CCHHHHHHHEEEEEE-HHHHHHHH-HCCH-HHHHHH--HHH
T ss_conf             41379999999999999877336330448989864-9--863603523067887-25247887-3531-888999--999


Q ss_pred             HHHHHHHHHH----HH------HHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9888889999----99------9973332235777-448999999999999999999999999
Q 000799          370 AIMLPSSVIP----LF------RVASSRQIMGVHK-ISQYHEFLVLITFMGMLGLKLIFMVEM  421 (1279)
Q Consensus       370 aLlLPFAlIP----LL------~ltNsr~IMG~~r-nS~~lnILawli~liIi~LNI~fVv~~  421 (1279)
                      .+.+|+....    +.      ++.++-+-|..++ +..|.-.+-+++-++++++=++.+++.
T Consensus       405 ~~~l~~~~l~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~~~  467 (509)
T d2a65a1         405 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREY  467 (509)
T ss_dssp             THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHEEEEEECHHHHHHHHHHCCCCCHHHHHHHHEEEEEHHHHHHEEEHHHHHC
T ss_conf             999999999998602237538999999984789877899987403423853635254238642