Citrus Sinensis ID: 000801

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------128
MESMLEEQTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTNDQSGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEEPNENFQSMLEIEKGVGNEAFNPYGGDRNAKSESNERTDIQSMLQAQEPELSFSQDASFCLPSTSLGSSEVKTDSADEKLNEQSSCGGVKSFLGKTFNEPYPGNKPSDCISNVDLHLGLSMSKSVADTNKYLTEDQITGYVQQQNPSEESLHEADKIEPGAKEENSQIIGGKRNHDNCSGINKEITTKKVTEVPAKKIRAEKLTQTNPHKDEANASILANSKKFPTLIAGRRHEKSKLCPEKVDVTSDIMSIVKGTKCKLPKGLAHKNSADRSSKDRENVSGLRVKKIMKRPAEDKDSSELVQELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKCEPVKQPAHLAVKVKKSMLEKGKVRESLTKKIYGNSNGRRRRAWNRDCEVEFWKYRCMKATKTEKIGTLKSVLDLLRNNSQSSDTEQSTECQETNPILSRLYLADTSVFPRKDNIMPLSALKATDNSEQSKEQAISMEKPLKLSSDNCASKVAETNKVSSKVGVLSAYEKGTRNMSCSKSNAALSKVHPIQLGDPKVNSLKGTATSDDVKVDKRKWALEILARKTAVACKSATHEKPEDTAMLKRNYPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSNSKLVYLNLCSHEISCRSDNKKSTRATESNSSAPPAVPIDELERATDKLSTDHSVEEALRNAGLLSDSPPNSPHHPTEVPSEVDISSMETGEGEPDNVFEMESHAEMDIYGDFEYDLEDEDFIGVSAMKVSNLQPEEVSKVKVVFSTLNSEKLNNVVDNKVGGGLEKNEHKDSTCLLESHSDAVIRSSTTEDGTSKPCIPLESLPCEEGEDLSLAECEELYGPDKEPLVSKFPEVSQKPCGLLDGEAQAENKCAGEASDIGNEQHDEDISCGKEKLTDDVQTGDGTLRKESESSTSTEKRHDGVNLVSRKVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAAAQQKGKVYPQ
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHccccccccccccccccccccccccHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEEEEEEEccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccEEEEEEEEHHHHcHHHHHHHcccccccccEEcccHHHHHHHHHHHHHHHHHccccccc
cccHcccccccccccccccccccccccccEHccccccccccccccEHHHHHHHHHHHHcccccccccccEEEEEEccccccccEEEEEEEcccccEEcccccccEEcccccccccccEEEccccccccccccEcccccccccEEEEEcccccccHHHHcccccccccccccccHHHHccccccccccccccccccccccccccccccHHcccccEEEEEEccccEEEEEEEccccccccccccccHcccccccccccccccccccccccccccccHHHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccHHHHHHHHHHHcccHHHccccccccccccHHccEcccccccccccccccccccccccccccHHHEEcccccccccccccccHHHHHcHccccHEEEccccccccccccccccccccHEEEccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccHHHHHHHHHEcccccccccccccccEEHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHEEHccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHccccccccccccccccccccccEccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHccccHHHHccccccccccEEEEEEcccccccccHHHHHcccccccccccccccccccccccEEEcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHccccccc
mesmleeqtfqvdntendllnfecgrcgicmdvvidrgvldccqhwfcfacidnwstitnlcplcqgefqlitcvpvydtigsnnidgdslsrgedwsieeksntlsfpsyyidenavicldgdgckirsgsmvaeessnldtsiacdscdlwyhafcvgfdpegtcedtwlcprcvaevpqnssidltqstndqsgpenangdhlaeslfprkvsvsvadaGETAVVVSMIGEEPNENFQSMLEIEKgvgneafnpyggdrnaksesnerTDIQSMLQAqepelsfsqdasfclpstslgssevktdsadeklneqsscggvksflgktfnepypgnkpsdcisnvdLHLGLsmsksvadtnkyltedqitgyvqqqnpseeslheadkiepgakeensqiiggkrnhdncsginkeittkkvtevpAKKIRAEkltqtnphkdeanASILAnskkfptliagrrheksklcpekvdvtSDIMSIVKgtkcklpkglahknsadrsskdrenvsgLRVKKImkrpaedkdsSELVQELRKEIREAVRNrsskdcdenlfdpKLLAAFRAAiagpkcepvkqpaHLAVKVKKSMLEKGKVRESLTKKiygnsngrrrrawnRDCEVEFWKYRCMKATKTEKIGTLKSVLDLLrnnsqssdteqstecqetnpilsrlyladtsvfprkdnimplsalkatdnseqSKEQAISmekplklssdncaSKVAETNKVSSKVGVLSAYekgtrnmscsksnaalskvhpiqlgdpkvnslkgtatsddvkvdKRKWALEILARKTAVACKsathekpedtamlkrnypllarlpadmkpvlapshhnkipisvrqTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSNSKLVYLNLCSheiscrsdnkkstratesnssappavpideleRATDKLSTDHSVEEALRnagllsdsppnsphhptevpsevdissmetgegepdnvfemESHAemdiygdfeydlededfigvsamkvsnlqpeevSKVKVVFSTLnseklnnvvdnkvgggleknehkdstclleshsdavirssttedgtskpcipleslpceegedlslaeceelygpdkeplvskfpevsqkpcglldgEAQAEnkcageasdigneqhdediscgkekltddvqtgdgtlrkesesststekrhdgvnLVSRKVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAAAQqkgkvypq
MESMLEEQTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTNDQSGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEEPNENFQSMLEIEKGVGNEAFNPYGGDRNAKSESNERTDIQSMLQAQEPELSFSQDASFCLPSTSLGSSEVKTDSADEKLNEQSSCGGVKSFLGKTFNEPYPGNKPSDCISNVDLHLGLSMSKSVADTNKYLTEDQITGyvqqqnpseeslheadkiepgakeensqiiggkrnhdncsginkeittkkvtevpakkiraekltqtnphkdeanasilanskkfptliagrrheksklcpekvdvtsdIMSIVkgtkcklpkglahknsadrsskdrenvsglrvkkimkrpaedkdsselVQELRKEIReavrnrsskdcdenlFDPKLLAAFRAAIAgpkcepvkqpaHLAVKVKksmlekgkvresltkkiygnsngrrrrawnrdcEVEFWKYrcmkatktekigtlKSVLDLLRNnsqssdteqstecqetnpilsRLYLADTSVFPRKDNIMPLSalkatdnseqSKEQAIsmekplklssdNCASKvaetnkvsskvgVLSAYEKGTRNMSCSKSNAalskvhpiqlgdpkvnslkgtatsddvkvdkrKWALEILARktavacksathekpedtamlkRNYPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIekevadrsnskLVYLNLCSheiscrsdnkkstratesnssappavpideLERATDKLSTDHSVEEALRNAgllsdsppnspHHPTEVPSEVDISSMETGEGEPDNVFEMESHAEMDIYGDFEYDLEDEDFIGVSAMkvsnlqpeevSKVKVVFstlnseklnnvvdnkvgggleKNEHKDSTCLLESHSDAvirssttedgtskpcIPLESLPCEEGEDLSLAECEELYGPDKEPLVSKFPEVSQKPCGLLDGEAQAENKCAGEASDIGNEQHDEDISCGkekltddvqtgdgtlrkesesststekrhdgvnlvSRKVEAYIKEhirplcksgiitAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAaaqqkgkvypq
MESMLEEQTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTNDQSGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEEPNENFQSMLEIEKGVGNEAFNPYGGDRNAKSESNERTDIQSMLQAQEPELSFSQDASFCLPSTSLGSSEVKTDSADEKLNEQSSCGGVKSFLGKTFNEPYPGNKPSDCISNVDLHLGLSMSKSVADTNKYLTEDQITGYVQQQNPSEESLHEADKIEPGAKEENSQIIGGKRNHDNCSGINKEITTKKVTEVPAKKIRAEKLTQTNPHKDEANASILANSKKFPTLIAGRRHEKSKLCPEKVDVTSDIMSIVKGTKCKLPKGLAHKNSADRSSKDRENVSGLRVKKIMKRPAEDKDSSELVQELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKCEPVKQPAHLAVKVKKSMLEKGKVRESLTKKIYGNSNGRRRRAWNRDCEVEFWKYRCMKATKTEKIGTLKSVLDLLRNNSQSSDTEQSTECQETNPILSRLYLADTSVFPRKDNIMPLSALKATDNSEQSKEQAISMEKPLKLSSDNCASKVAETNKVSSKVGVLSAYEKGTRNMSCSKSNAALSKVHPIQLGDPKVNSLKGTATSDDVKVDKRKWALEILARKTAVACKSATHEKPEDTAMLKRNYPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSNSKLVYLNLCSHEISCRSDNKKSTRATESNSSAPPAVPIDELERATDKLSTDHSVEEALRNAGLLSDSPPNSPHHPTEVPSEVDISSMETGEGEPDNVFEMESHAEMDIYGDFEYDLEDEDFIGVSAMKVSNLQPEEVSKVKVVFSTLNSEKLNNVVDNKVGGGLEKNEHKDSTCLLESHSDAVIRSSTTEDGTSKPCIPLESLPCEEGEDLSLAECEELYGPDKEPLVSKFPEVSQKPCGLLDGEAQAENKCAGEASDIGNEQHDEDISCGKEKLTDDVQTGDGTLRKesesststeKRHDGVNLVSRKVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAAAQQKGKVYPQ
**************TENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDG********WSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVA***SNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV**************************************VADAGETAVVVSMI**************************************************************************************************************CISNVDLHLGLSM*******NKYLTE**I********************************************************************************************************KVDVTSDIMSIVKGTKC*****************************************************************NLFDPKLLAAFRAAIAGPKCEPVKQPAHLAVKV****************KIYGNSNGRRRRAWNRDCEVEFWKYRCMKATKTEKIGTLKSVLDLL********************ILSRLYLADTSVF****************************************************************************************************KVDKRKWALEILARKTAVACK************LKRNYPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSNSKLVYLNLCSHEIS*******************************************************************************************MDIYGDFEYDLEDEDFIGVSAMKVSNLQPEEVSKVKVVFSTLNSEKLNNVV**************************************************************************************************************************************************VNLVSRKVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKL******************
*************************RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FDPKLLAAF***************************************************WNRDCEVEFWKYRC******************************************RLYLADTSVFPRKDNIM****************************************************************************************************ALEIL************************NYPLLARLPA******************RQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKE*****NSKLVYLNLC**********************************************E***************************************************IYGDFEYDLE*************************************************************************************************************************************************************************************************EAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAA**********
*********FQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGS*********DTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQ************GDHLAESLFPRKVSVSVADAGETAVVVSMIGEEPNENFQSMLEIEKGVGNEAFNPYGGDRN***********QSMLQAQEPELSFSQDASFCLPST********************SCGGVKSFLGKTFNEPYPGNKPSDCISNVDLHLGLSMSKSVADTNKYLTEDQITGYV**************KIEPGAKEENSQIIGGKRNHDNCSGINKEITTKKVTEVPAKKIRAEKLTQTNPHKDEANASILANSKKFPTLIAGRRHEKSKLCPEKVDVTSDIMSIVKGTKCKLPK******************SGLRVKKIMK************QELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKCEPVKQPAHLAVKVKKSMLEKGKVRESLTKKIYGNSNGRRRRAWNRDCEVEFWKYRCMKATKTEKIGTLKSVLDLLRNN**************TNPILSRLYLADTSVFPRKDNIMPLSALK**************MEKPLKLSSDNCASKVAETNKVSSKVGVLSAYEKGTRNMSCSKSNAALSKVHPIQLGDPKVNSLKGTATSDDVKVDKRKWALEILARKTAV**********EDTAMLKRNYPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSNSKLVYLNLCSHEIS********************AVPIDELERATDKLSTDHSVEEALRNAGLLSD**************************EPDNVFEMESHAEMDIYGDFEYDLEDEDFIGVSAMKVSNLQPEEVSKVKVVFSTLNSEKLNNVVDNKVGGGLEKNEHKDSTCLLESHSDAVIRSSTTEDGTSKPCIPLESLPCEEGEDLSLAECEELYGPDKEPLVSKFPEVSQKPCGLLDGEAQAENKCAGEASDIGNEQHDEDISCGKEKLTDDVQT********************GVNLVSRKVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAAA*********
************************GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE********************************PRKVSVSVADAGETAVVVSMIGEE*******MLE*EK*VGNEA************************************ASF***********************************************************************YLTEDQITGYVQQQNPSEESLHEADKIEPG*****************************************************N*SI**N*K*FP*LIAG*************DVTSDI*SIVKGT************************SGLRVKKIMKRPA*DKDSSELVQELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKCE***QPAHLAVKVKKSMLEKGKVRESLTKKIYGNS***RRRAWNRDCEVEFWKYRCMKATKTEKIGTLKSVLDLLRNN***************NPILSRLYLADTSVFPRKDNIMPLSALKAT***********************************************************************************DVKVDKRKWALEILARKTAVA***********TAMLKRNYPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSNSKLVYLNLCSHEISC*******************************************************************************DNVFEMESHAEMDIYGDFEYDLEDEDFIGVSAMKVSNLQPEEVSKVKVVFSTLNSEKLNNVVDNKV***********************************PC***********EDLSLAECEELYGPDKEPLVSKFPE**********************************************************************NLVSRKVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAAAQQK******
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MESMLEEQTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTNDQSGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEEPNENFQSMLEIEKGVGNEAFNPYGGDRNAKSESNERTDIQSMLQAQEPELSFSQDASFCLPSTSLGSSEVKTDSADEKLNEQSSCGGVKSFLGKTFNEPYPGNKPSDCISNVDLHLGLSMSKSVADTNKYLTEDQITGYVQQQNPSEESLHEADKIEPGAKEENSQIIGGKRNHDNCSGINKEITTKKVTEVPAKKIRAEKLTQTNPHKDEANASILANSKKFPTLIAGRRHEKSKLCPEKVDVTSDIMSIVKGTKCKLPKGLAHKNSADRSSKDRENVSGLRVKKIMKRPAEDKDSSELVQELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKCEPVKQPAHLAVKVKKSMLEKGKVRESLTKKIYGNSNGRRRRAWNRDCEVEFWKYRCMKATKTEKIGTLKSVLDLLRNNSQSSDTEQSTECQETNPILSRLYLADTSVFPRKDNIMPLSALKATDNSEQSKEQAISMEKPLKLSSDNCASKVAETNKVSSKVGVLSAYEKGTRNMSCSKSNAALSKVHPIQLGDPKVNSLKGTATSDDVKVDKRKWALEILARKTAVACKSATHEKPEDTAMLKRNYPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSNSKLVYLNLCSHEISCRSDNKKSTRATESNSSAPPAVPIDELERATDKLSTDHSVEEALRNAGLLSDSPPNSPHHPTEVPSEVDISSMETGEGEPDNVFEMESHAEMDIYGDFEYDLEDEDFIGVSAMKVSNLQPEEVSKVKVVFSTLNSEKLNNVVDNKVGGGLEKNEHKDSTCLLESHSDAVIRSSTTEDGTSKPCIPLESLPCEEGEDLSLAECEELYGPDKEPLVSKFPEVSQKPCGLLDGEAQAENKCAGEASDIGNEQHDEDISCGKEKLTDDVQTGDGTLRKESESSTSTEKRHDGVNLVSRKVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAAAQQKGKVYPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1279 2.2.26 [Sep-21-2011]
Q8L7I1984 Uncharacterized protein A yes no 0.572 0.743 0.492 0.0
Q9P1Y6 1649 PHD and RING finger domai no no 0.096 0.074 0.253 3e-07
A6H619 1682 PHD and RING finger domai yes no 0.096 0.073 0.267 1e-06
Q63625 1685 PHD and RING finger domai yes no 0.098 0.074 0.254 4e-06
Q80Z371033 E3 ubiquitin-protein liga no no 0.036 0.045 0.425 3e-05
Q9NS561045 E3 ubiquitin-protein liga yes no 0.036 0.044 0.425 3e-05
Q9V8P91038 E3 ubiquitin-protein liga no no 0.035 0.044 0.413 8e-05
P09309467 E3 ubiquitin-protein liga no no 0.042 0.115 0.444 8e-05
O94400571 PHD and RING finger domai yes no 0.083 0.187 0.234 0.0002
Q99590 1463 Protein SCAF11 OS=Homo sa no no 0.046 0.041 0.349 0.0002
>sp|Q8L7I1|Y4193_ARATH Uncharacterized protein At4g10930 OS=Arabidopsis thaliana GN=At4g10930 PE=2 SV=1 Back     alignment and function desciption
 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/825 (49%), Positives = 527/825 (63%), Gaps = 93/825 (11%)

Query: 478  DVTSDIMSIVKGTKCKLPKGLAHKNSADRSSKDRENVSGLRVKKIMKRPAEDKDSSELVQ 537
            + T DI SIVKGT  +  K L   N  D+SS + EN +GLRVKKI + P ++K+S  LV+
Sbjct: 211  NTTVDIFSIVKGTGRR--KNLMRSNPTDKSS-EAENAAGLRVKKIKRTPEDEKESMVLVE 267

Query: 538  ELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKC-EPVKQPAHLAVKVKKSMLE 596
            +LRKEIREAVRN+S +D  EN FDPKLLAAFRAA+AGPK  E  ++ + LAVK KK ML+
Sbjct: 268  KLRKEIREAVRNKSMEDIRENQFDPKLLAAFRAAVAGPKTGEAPRRSSALAVKAKKLMLQ 327

Query: 597  KGKVRESLTKKIYGNSNGRRRRAWNRDCEVEFWKYRCMKATKTEKIGTLKSVLDLLRNNS 656
            KGKVRE+LTKKIY + NG+R+ AW+RDCEVEFWK+RC++  K EKI TLKSVL LL+N  
Sbjct: 328  KGKVRENLTKKIYADLNGKRKSAWHRDCEVEFWKHRCIQGRKPEKIETLKSVLSLLKNKP 387

Query: 657  QSSDTEQSTEC-QETNPILSRLYLADTSVFPRKDNIMPLSALKATDNSEQSKEQAISMEK 715
              + T  S+E  Q +NPILSRLYLADTSVFPR DN+ PL A K   NS+ + +   + + 
Sbjct: 388  ADTKTNFSSETPQASNPILSRLYLADTSVFPRNDNLKPLLAPKEMGNSQNNGKPTEASKT 447

Query: 716  PLKLSSDNCASKVAETNKVSSKVGVLSAYEKGTRNMSCSKSNAALSKVHPIQLGDPKVNS 775
              K+S    A+K +      SK+   +    G  N++ S                   NS
Sbjct: 448  LPKIS----AAKGSSVKAAGSKLNSGNKQSDGQPNLTSS-------------------NS 484

Query: 776  LKGTATSDDVKVDKRKWALEILARKTAVACKSATHEKPEDTAMLKRNYPLLARLPADMKP 835
             +     DD+K DKRKWAL++LARK A+A  ++T +K E +  LK NYPLLA+LPADM+P
Sbjct: 485  KEMVENPDDLKKDKRKWALQVLARKKALAGNNSTQDK-EGSPELKGNYPLLAQLPADMRP 543

Query: 836  VLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSN 895
             LA S HNK+P++VRQTQLYRLTE  L+K NL  IRR+A TELAVADA+NIEK +AD+S+
Sbjct: 544  SLATSRHNKVPVAVRQTQLYRLTEHLLKKENLLTIRRSAATELAVADAINIEKAIADKSS 603

Query: 896  SKLVYLNLCSHEISCRSDNKKSTRATESNSSAPPAVPIDELERATDKLSTDHSVEEALRN 955
            SK+VYLNLCS EI   S++K    A E NSS+P A    E ER + K S + +V EALR 
Sbjct: 604  SKVVYLNLCSQEILHHSESKTMDNAVEPNSSSPMA--DSESERISSKDSDNPAVLEALRA 661

Query: 956  AGLLSDSPPNSPHHPTEV-PSEVDISSMETGEGEPDNVFEMESHAEMDIYGDFEYDLEDE 1014
            AG L+DSPPNSP    EV P + D S  +T E  P NVF+M+S  + DI+GDFEY+L++E
Sbjct: 662  AG-LADSPPNSPTRSVEVLPEKGDSSLDKTRETGPYNVFDMDSVPDTDIFGDFEYELDEE 720

Query: 1015 DFIGVS-AMKVSNLQPEE-VSKVKVVFSTLNSEKLNNVVDNKVGGGLEKNEHKDSTCLLE 1072
            D+ G + A K S +QP+E ++KVKVV ST+           + G  L  +E  +      
Sbjct: 721  DYFGATMAKKASVMQPDESLTKVKVVLSTV-----------QPGKSLNPSEVVEDEE--T 767

Query: 1073 SHSDAVIRSSTTEDGTSKPCIPLESLPCEEGED----------------LSLAECEELYG 1116
            +  +    ++  EDG S   +P+E +P  EGE                 LS+AECEELYG
Sbjct: 768  TTENLNETTNGKEDGKS--FVPMELVPEAEGEGEGEGEGEGEGEGGGEILSVAECEELYG 825

Query: 1117 PDKEPLVSKFPEVSQKPCGLLDGEAQAENKCAGEASDIGNEQHDE--------DISCGKE 1168
            P  E LV       ++P  L++G   AEN    +A D   E + +        +I+C +E
Sbjct: 826  PGTEKLV-------ERP--LIEG--FAENGVKAKAPDSECESNTQREFIASNFEITCIQE 874

Query: 1169 -KLTDDVQTGDGTLRKESESSTSTEK-RHDGV-NLVSRKVEAYIKEHIRPLCKSGIITAE 1225
             KL   +Q       K SE  +  EK + DG  N +++KVEAYIKEHIRPLCKSG+I  E
Sbjct: 875  KKLPRSIQKC-----KPSEKPSKEEKGKADGFGNSITKKVEAYIKEHIRPLCKSGVINVE 929

Query: 1226 QYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAAA 1270
            QYRWAV KTT+KVMKYHS AK+ANFLIKEG+K+KKLAEQYV+ A+
Sbjct: 930  QYRWAVTKTTEKVMKYHSKAKSANFLIKEGDKIKKLAEQYVETAS 974

Arabidopsis thaliana (taxid: 3702)
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3 Back     alignment and function description
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2 Back     alignment and function description
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2 Back     alignment and function description
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1 Back     alignment and function description
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1 Back     alignment and function description
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster GN=Topors PE=1 SV=1 Back     alignment and function description
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus (strain Dumas) GN=61 PE=1 SV=1 Back     alignment and function description
>sp|O94400|YQF7_SCHPO PHD and RING finger domain-containing protein C126.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.07c PE=4 SV=1 Back     alignment and function description
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1279
2254262961304 PREDICTED: uncharacterized protein LOC10 0.967 0.948 0.566 0.0
2977423521223 unnamed protein product [Vitis vinifera] 0.926 0.968 0.560 0.0
1478059241328 hypothetical protein VITISV_011762 [Viti 0.942 0.908 0.530 0.0
3565114391307 PREDICTED: uncharacterized protein At4g1 0.954 0.934 0.512 0.0
3565276861316 PREDICTED: uncharacterized protein At4g1 0.939 0.913 0.508 0.0
4494524041237 PREDICTED: uncharacterized protein LOC10 0.925 0.957 0.494 0.0
224058206774 predicted protein [Populus trichocarpa] 0.597 0.987 0.623 0.0
255537835848 conserved hypothetical protein [Ricinus 0.644 0.971 0.577 0.0
449529588796 PREDICTED: uncharacterized protein At4g1 0.603 0.969 0.523 0.0
297813545983 hypothetical protein ARALYDRAFT_911406 [ 0.573 0.746 0.496 0.0
>gi|225426296|ref|XP_002265315.1| PREDICTED: uncharacterized protein LOC100254675 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1300 bits (3365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 749/1322 (56%), Positives = 907/1322 (68%), Gaps = 85/1322 (6%)

Query: 4    MLEEQTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCP 63
            M E+ +++VD  + D    E  +CGICMD++IDRGVLDCCQHWFCFACIDNW+TITNLCP
Sbjct: 10   MAEDDSYEVDE-DIDASGLEGEKCGICMDIIIDRGVLDCCQHWFCFACIDNWATITNLCP 68

Query: 64   LCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDG 123
            LCQ EFQLITCVPVYDTIG++ +D DS  R +DWSIE K+NTLSFPSYYIDENAVICLDG
Sbjct: 69   LCQTEFQLITCVPVYDTIGTSKVDEDSFPRDDDWSIEGKNNTLSFPSYYIDENAVICLDG 128

Query: 124  DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRC-VAEVPQ 182
            DGCKIRSGS    E SNLDTSIACDSCD+WYHAFCVGFDPEGT ED+WLCPRC VA +P 
Sbjct: 129  DGCKIRSGSATITEDSNLDTSIACDSCDIWYHAFCVGFDPEGTSEDSWLCPRCAVAGMPG 188

Query: 183  NSSIDLTQSTNDQSGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMI-----GEEPN 237
             S +         SG  + N + L E  F RK+SVSVADAGETA+VVSM+      EE +
Sbjct: 189  KSVV---------SGLGDGNSECLLEDGFSRKLSVSVADAGETALVVSMVEGNQWMEESS 239

Query: 238  ENFQSMLEIEKGVGNEAFNPYG-GDRN---AKSESNERTDIQSMLQAQEPELSFSQDASF 293
            E+F S LE      +  F  Y   D N   + + S ER ++Q  L+AQE ELS S+D SF
Sbjct: 240  EDFLSNLE---DCNDWKFESYLISDANCLESPTPSAERDNMQPNLEAQELELSLSRDTSF 296

Query: 294  CLPSTSLGSSEVKTDSADEKLNEQSSCGGVKSFLGKTFNEPYPGNKPSDCISNVDLHLGL 353
             LPS S   +++KT+SA++ +NE S   G++    K  +     NKPS+  S++ LHLGL
Sbjct: 297  SLPSNSSVLNDLKTNSANKIVNEPSGFDGLRISSTKLLDGSCSENKPSESESSIGLHLGL 356

Query: 354  SMSK--SVADTNKYLTEDQ----------ITGYVQQQNPSEESLHEADKIEPGAKEENSQ 401
            S+    SV  T    T+D+          +   V QQ+PSEES   ADKI   A  E+ +
Sbjct: 357  SVGSFLSVESTKDRGTDDENTKDTGTDEVVAADVHQQHPSEESPLSADKIIAHAN-EDMK 415

Query: 402  IIGGKRNH-DNCSGINKEITTKKV-----TEVPAKKIRAEKLTQTNPHKDEANAS-ILAN 454
            I G KR H D   G+       KV     TEV AKK+RAE   Q  P + +AN   +  +
Sbjct: 416  IAGVKRKHTDYSDGVQTSAGNGKVKAEIGTEVSAKKVRAEGKIQMAPIEKQANGQHVSVD 475

Query: 455  SKKFPTLIAGRRHEKSKLCPEKVDVTSDIMSIVKGTKCKLPKGLAHKNSADRSSKDRENV 514
            ++K  + +     ++ +   ++ +VTSDIMSIV+GT  +  KGLA K     S  +REN 
Sbjct: 476  AQKGHSTVEVSTGDELRHNRKRKEVTSDIMSIVQGTDRRPLKGLAEK-----SDGERENA 530

Query: 515  SGLRVKKIMKRPAEDKDSSELVQELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAG 574
            +GLRVKKIMKR +EDK+S+ LVQ+LRKEIREAVR++SS +   NLFDPKLL AFRAAIAG
Sbjct: 531  TGLRVKKIMKRASEDKESAVLVQKLRKEIREAVRSKSSIELGTNLFDPKLLTAFRAAIAG 590

Query: 575  PKCEPV-KQPAHLAVKVKKSMLEKGKVRESLTKKIYGNSNGRRRRAWNRDCEVEFWKYRC 633
            P  E   ++ +  A+KVKKSML+KGK+RE+LTKKIY  S G+RRRAW+RD EVEFWK+RC
Sbjct: 591  PITETTARKLSPSALKVKKSMLQKGKIRENLTKKIYATSKGKRRRAWDRDLEVEFWKHRC 650

Query: 634  MKATKTEKIGTLKSVLDLLRNNSQSSDTEQSTECQETNPILSRLYLADTSVFPRKDNIMP 693
            M+ATK EKI TLKSVLDLLR  S+  D EQ +E Q TNPILSRLYLADTSVFPRKD+I P
Sbjct: 651  MRATKPEKIETLKSVLDLLR-TSECIDPEQGSESQTTNPILSRLYLADTSVFPRKDDIKP 709

Query: 694  LSALKATDNSEQSKEQAISMEKPLKLSSDNCASKVAETNKVSSKVGVLSAYEKGTR-NMS 752
            L+ALKA+ N EQ+KE A SMEK  K +  + A K  ET K+ SKVG      KG + N S
Sbjct: 710  LAALKASGNPEQNKEHA-SMEKVSKPALHSPAVKAPETCKIPSKVGFSPYDHKGNKSNAS 768

Query: 753  CSKSNAALSKVHP--------IQLG-DPKVNSLKGTAT-SDDVKVDKRKWALEILARKTA 802
              K   A  K HP        I L    KVNS K     SDD+K DKRKWALE+LARK A
Sbjct: 769  SLKDATAHGKPHPGKRPEGSSIPLSVASKVNSQKEAGVKSDDIKTDKRKWALEVLARKNA 828

Query: 803  VACKSATHEKPEDTAMLKRNYPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFL 862
             A K+ T EK ED A+LK NYPLL +LP DM+PVLAPS HNKIP SVRQTQLYRLTE FL
Sbjct: 829  AASKNTTQEKQEDNALLKGNYPLLTQLPRDMRPVLAPSQHNKIPASVRQTQLYRLTEHFL 888

Query: 863  RKANLPVIRRTAETELAVADAVNIEKEVADRSNSKLVYLNLCSHEISCRSDNKKSTRATE 922
            RKANLPVIRRTAETELAVADAVNIE+EVA+RSNSKLVY+NLCS E+  RSD  KS+RA E
Sbjct: 889  RKANLPVIRRTAETELAVADAVNIEREVANRSNSKLVYVNLCSQELLHRSDGSKSSRALE 948

Query: 923  SNSSA------------PPAVPIDELERATDKLSTDHSVEEALRNAGLLSDSPPNSPHHP 970
            S+S              PPA   D  E  T++LSTD  +EEALR AGLLSDSPPNSP   
Sbjct: 949  SDSDCSKSSRAIESDPLPPAESTDRSEPTTNELSTDPEIEEALRTAGLLSDSPPNSPLQE 1008

Query: 971  TEVPSEVDISSMETGEGEPDNVFEMESHAEMDIYGDFEYDLEDEDFIGVSAMKVSNLQPE 1030
             +  ++ D  S +  E  PDNVFEM+SH E+DIYGDFEYDLEDE++IG +A+K S +Q E
Sbjct: 1009 IKDLNDEDDPSKDNREEGPDNVFEMDSHLELDIYGDFEYDLEDEEYIGATALKASKVQEE 1068

Query: 1031 EVSKVKVVFSTLNSEKLNNV--VDNKVGGGLEKNEHKDSTCLLESHSDAVIRSSTTEDGT 1088
              SK+KVVFSTLNS++ N+V  ++  V  G+ +   K+S   L+ H+D  IRSST E GT
Sbjct: 1069 GESKMKVVFSTLNSDRSNDVLNLEEHVKVGIAEAP-KNSPSSLKHHTDTCIRSSTMEGGT 1127

Query: 1089 SKPCIPLESLPCEEGEDLSLAECEELYGPDKEPLVSKFPEVSQKPCGLLDGEAQAENKCA 1148
               C+P ES   E G++ SL ECEELYGPDKEPL+ +FPE + +  GL   EA A+N   
Sbjct: 1128 DHSCLPPESFLGEGGKEPSLEECEELYGPDKEPLIQRFPEKATELYGLFHTEALAKNTVP 1187

Query: 1149 GEASDIGNEQHDEDISC-GKEKLTDDVQTGDGTLRKESESSTSTEKRHDGVNLVSRKVEA 1207
            G+     NE + ED +  G E   +  QTG+   RKE +S+T T K+ D  + V  KVEA
Sbjct: 1188 GK-----NENYGEDQAVKGGENSPNPSQTGENG-RKE-KSNTDTNKQTDSSSSVHGKVEA 1240

Query: 1208 YIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVD 1267
            YIKEHIRPLCKSG+IT EQYRWAV KTT+KVMKYH+ AKNANFLIKEGEKVKKLAEQYV+
Sbjct: 1241 YIKEHIRPLCKSGVITVEQYRWAVGKTTEKVMKYHAKAKNANFLIKEGEKVKKLAEQYVE 1300

Query: 1268 AA 1269
            AA
Sbjct: 1301 AA 1302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742352|emb|CBI34501.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147805924|emb|CAN74396.1| hypothetical protein VITISV_011762 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511439|ref|XP_003524434.1| PREDICTED: uncharacterized protein At4g10930-like [Glycine max] Back     alignment and taxonomy information
>gi|356527686|ref|XP_003532439.1| PREDICTED: uncharacterized protein At4g10930-like [Glycine max] Back     alignment and taxonomy information
>gi|449452404|ref|XP_004143949.1| PREDICTED: uncharacterized protein LOC101208477 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224058206|ref|XP_002299464.1| predicted protein [Populus trichocarpa] gi|222846722|gb|EEE84269.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537835|ref|XP_002509984.1| conserved hypothetical protein [Ricinus communis] gi|223549883|gb|EEF51371.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449529588|ref|XP_004171780.1| PREDICTED: uncharacterized protein At4g10930-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297813545|ref|XP_002874656.1| hypothetical protein ARALYDRAFT_911406 [Arabidopsis lyrata subsp. lyrata] gi|297320493|gb|EFH50915.1| hypothetical protein ARALYDRAFT_911406 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1279
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 4e-09
cd0016245 cd00162, RING, RING-finger (Really Interesting New 6e-09
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 2e-08
smart0018440 smart00184, RING, Ring finger 2e-08
PHA02929238 PHA02929, PHA02929, N1R/p28-like protein; Provisio 7e-08
pfam0062851 pfam00628, PHD, PHD-finger 2e-07
smart0024947 smart00249, PHD, PHD zinc finger 3e-06
PHA02926242 PHA02926, PHA02926, zinc finger-like protein; Prov 2e-05
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 3e-05
PLN03208193 PLN03208, PLN03208, E3 ubiquitin-protein ligase RM 2e-04
COG519488 COG5194, APC11, Component of SCF ubiquitin ligase 0.003
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information 
 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLC 65
          C IC+D++ D  VL  C H FC  CI  +    + CP+C
Sbjct: 5  CPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPIC 43

Length = 45
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1279
KOG08251134 consensus PHD Zn-finger protein [General function 99.68
PHA02926242 zinc finger-like protein; Provisional 98.84
PHA02929238 N1R/p28-like protein; Provisional 98.79
KOG1244336 consensus Predicted transcription factor Requiem/N 98.76
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.6
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.59
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 98.59
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 98.47
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 98.44
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.37
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.34
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.27
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.26
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.26
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.22
smart0050463 Ubox Modified RING finger domain. Modified RING fi 98.22
KOG1512381 consensus PHD Zn-finger protein [General function 98.18
KOG4443694 consensus Putative transcription factor HALR/MLL3, 98.16
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 98.12
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.1
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.09
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.07
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.04
KOG0287442 consensus Postreplication repair protein RAD18 [Re 97.97
PF1463444 zf-RING_5: zinc-RING finger domain 97.92
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 97.87
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 97.84
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.82
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.82
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.78
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 97.77
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 97.76
KOG4299613 consensus PHD Zn-finger protein [General function 97.76
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 97.64
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.63
KOG1973274 consensus Chromatin remodeling protein, contains P 97.63
KOG0956900 consensus PHD finger protein AF10 [General functio 97.63
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 97.6
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.58
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 97.56
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.53
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.48
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 97.47
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 97.46
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 97.4
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.35
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.35
KOG0383696 consensus Predicted helicase [General function pre 97.34
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 97.27
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.23
KOG149384 consensus Anaphase-promoting complex (APC), subuni 97.19
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 97.16
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 97.12
COG5141669 PHD zinc finger-containing protein [General functi 97.11
KOG0954893 consensus PHD finger protein [General function pre 96.8
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 96.68
COG52191525 Uncharacterized conserved protein, contains RING Z 96.55
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 96.52
KOG2660331 consensus Locus-specific chromosome binding protei 96.32
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 96.26
KOG4159398 consensus Predicted E3 ubiquitin ligase [Posttrans 96.15
KOG0297391 consensus TNF receptor-associated factor [Signal t 96.13
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 96.05
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 95.73
KOG0827465 consensus Predicted E3 ubiquitin ligase [Posttrans 95.65
KOG0957707 consensus PHD finger protein [General function pre 95.51
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 95.44
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.43
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 95.34
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 95.03
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 95.03
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 95.02
COG5152259 Uncharacterized conserved protein, contains RING a 94.8
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 94.77
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 94.72
PHA03096284 p28-like protein; Provisional 94.58
KOG1002791 consensus Nucleotide excision repair protein RAD16 94.2
PF04641260 Rtf2: Rtf2 RING-finger 94.01
COG5222427 Uncharacterized conserved protein, contains RING Z 93.74
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 92.2
KOG14731414 consensus Nucleosome remodeling factor, subunit NU 92.04
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 91.69
KOG4299613 consensus PHD Zn-finger protein [General function 91.56
KOG1941518 consensus Acetylcholine receptor-associated protei 91.14
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 91.12
PHA02825162 LAP/PHD finger-like protein; Provisional 91.07
COG5175480 MOT2 Transcriptional repressor [Transcription] 91.0
KOG3039303 consensus Uncharacterized conserved protein [Funct 90.53
KOG4739233 consensus Uncharacterized protein involved in syna 90.29
COG5236493 Uncharacterized conserved protein, contains RING Z 89.99
KOG0957707 consensus PHD finger protein [General function pre 89.96
KOG14283738 consensus Inhibitor of type V adenylyl cyclases/Ne 89.52
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 89.44
KOG1952950 consensus Transcription factor NF-X1, contains NFX 88.85
KOG1814445 consensus Predicted E3 ubiquitin ligase [Posttrans 88.75
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 88.35
KOG4445368 consensus Uncharacterized conserved protein, conta 87.87
PHA02862156 5L protein; Provisional 87.87
KOG2932389 consensus E3 ubiquitin ligase involved in ubiquiti 87.41
KOG0956900 consensus PHD finger protein AF10 [General functio 86.86
KOG4185296 consensus Predicted E3 ubiquitin ligase [Posttrans 86.82
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 86.38
KOG02981394 consensus DEAD box-containing helicase-like transc 86.21
KOG14731414 consensus Nucleosome remodeling factor, subunit NU 85.93
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 85.29
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 84.39
KOG1001674 consensus Helicase-like transcription factor HLTF/ 83.95
KOG08251134 consensus PHD Zn-finger protein [General function 83.89
KOG3970299 consensus Predicted E3 ubiquitin ligase [Posttrans 83.18
KOG4443694 consensus Putative transcription factor HALR/MLL3, 82.58
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 80.82
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 80.58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.68  E-value=8.5e-18  Score=197.96  Aligned_cols=140  Identities=22%  Similarity=0.491  Sum_probs=96.2

Q ss_pred             cccccccccccccc--eeecCCCCcccHhHHhhhccCCCCCCCCCcccceeeeccccccCCC-CcccCcccccCCccchh
Q 000801           24 CGRCGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGS-NNIDGDSLSRGEDWSIE  100 (1279)
Q Consensus        24 Dd~CpICLE~f~D~--~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~~VPVyD~iGg-e~Idn~sVrrrdD~~IE  100 (1279)
                      ...|+||+..+.+.  .....|+|+||..||..|.+...+||+||..|..+..   .+..+. ..+..+++........-
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V---~eS~~~~~~vR~lP~EEs~~~~e~  199 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV---LESTGIEANVRCLPSEESENILEK  199 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee---eccccccceeEecchhhhhhhhhh
Confidence            45688888877654  3345799999999999999999999999999997663   333343 33333333222111000


Q ss_pred             hcccCCCCCccccccccccccCCCCcCcCCCCCccccCCCCccccccCCCCcc-ccccccCCCCCCCCCCcccCCcCCCC
Q 000801          101 EKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLW-YHAFCVGFDPEGTCEDTWLCPRCVAE  179 (1279)
Q Consensus       101 EEdqSlsFPs~yIDee~viCsD~g~C~VC~Gs~~r~ddsnED~LLLCDsCDra-yH~~CLgPple~VPeGdWfCP~Crs~  179 (1279)
                      .-+   .....+.+...    +...|.||      +..+.+++||+||.|+.+ ||+|||+|++.++|-+.|||+.|.-.
T Consensus       200 ~~d---~~~d~~~~~~~----E~~~C~IC------~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL  266 (1134)
T KOG0825|consen  200 GGD---EKQDQISGLSQ----EEVKCDIC------TVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL  266 (1134)
T ss_pred             ccc---cccccccCccc----ccccceee------ccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence            000   00011222222    23469999      344578899999999999 99999999999999999999999754

>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PHA03096 p28-like protein; Provisional Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02825 LAP/PHD finger-like protein; Provisional Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1279
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 1e-09
2k16_A75 Transcription initiation factor TFIID subunit 3; p 4e-09
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 4e-09
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 6e-09
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 3e-08
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 4e-08
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 4e-08
1wee_A72 PHD finger family protein; structural genomics, PH 5e-08
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 6e-08
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 1e-07
3o70_A68 PHD finger protein 13; PHF13, structural genomics 1e-07
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 2e-07
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 2e-07
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 4e-07
1we9_A64 PHD finger family protein; structural genomics, PH 4e-07
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 5e-07
1wem_A76 Death associated transcription factor 1; structura 8e-07
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 2e-06
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 2e-06
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 3e-06
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 4e-06
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 5e-06
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 6e-06
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 7e-06
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 9e-06
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 1e-05
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 1e-05
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 2e-05
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 3e-05
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 3e-05
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 3e-05
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 4e-05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 4e-05
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 5e-05
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 5e-05
2ecm_A55 Ring finger and CHY zinc finger domain- containing 8e-05
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 1e-04
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 1e-04
1x4i_A70 Inhibitor of growth protein 3; structural genomics 1e-04
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 1e-04
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 2e-04
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 2e-04
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 2e-04
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 2e-04
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 2e-04
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 2e-04
2ect_A78 Ring finger protein 126; metal binding protein, st 2e-04
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 3e-04
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 3e-04
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 3e-04
2ysl_A73 Tripartite motif-containing protein 31; ring-type 3e-04
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 3e-04
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 3e-04
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 4e-04
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 4e-04
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 4e-04
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 4e-04
3kv5_D488 JMJC domain-containing histone demethylation prote 4e-04
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 5e-04
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 5e-04
1weu_A91 Inhibitor of growth family, member 4; structural g 5e-04
2ecw_A85 Tripartite motif-containing protein 30; metal bind 5e-04
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 8e-04
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 8e-04
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDT 80
          RC IC++   +  +   C H FC+ CI  W      CPLC+   + +      D+
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDS 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1279
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 1e-10
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 2e-08
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-08
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 3e-08
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 9e-08
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 3e-07
d3dplr188 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S 4e-07
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 2e-06
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 2e-06
d1vyxa_60 g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do 2e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 2e-06
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 3e-06
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 3e-06
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 5e-06
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 3e-05
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 5e-05
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 5e-05
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 1e-04
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 3e-04
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 3e-04
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 3e-04
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 7e-04
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 8e-04
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNN 85
          RC IC++   +  +   C H FC+ CI  W      CPLC+   + +      D+   + 
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDSEFGDQ 66

Query: 86 I 86
          +
Sbjct: 67 L 67
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1279
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.73
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.63
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.62
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.58
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.56
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.55
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.54
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.54
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.54
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.5
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.5
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.39
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.33
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.31
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.3
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.29
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.26
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.25
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.21
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.01
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.95
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.95
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.78
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.75
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.67
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.32
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 97.28
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.88
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 87.55
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 86.55
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 81.17
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.73  E-value=3.6e-09  Score=78.75  Aligned_cols=52  Identities=29%  Similarity=0.733  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf             7756100143233364041679993648678510147899988776542023
Q 000801           22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT   73 (1279)
Q Consensus        22 ~EddtCsICLE~l~Dr~vLdpCgHtFC~sCIeeWsKksnSCPlCRasFslI~   73 (1279)
                      ...+.|+||++.+.+..++.+|+|.||..||.+|.+...+||+||..+..+.
T Consensus         3 ~~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~~~   54 (68)
T d1chca_           3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHC
T ss_conf             9799994499396688388289991768999999982990888781637242
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure