Citrus Sinensis ID: 000808
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1275 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.977 | 0.868 | 0.729 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.972 | 0.871 | 0.724 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.989 | 0.865 | 0.724 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.989 | 0.865 | 0.723 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.984 | 0.854 | 0.701 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.989 | 0.862 | 0.709 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.974 | 0.865 | 0.713 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.991 | 0.871 | 0.692 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.988 | 0.872 | 0.697 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.870 | 0.688 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1971 bits (5107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 930/1275 (72%), Positives = 1073/1275 (84%), Gaps = 29/1275 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LK +G+V+YNGH + EFVPQRTAAYISQHD+HIG
Sbjct: 189 MTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIG 248
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL FSARCQGVGSR++ML EL+RREK A IKPD DID+YMKAAATEGQEANV+T
Sbjct: 249 EMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVT 308
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 309 DYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 368
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+ IVNS+RQ++ IL GTAVISLLQPAPETY+LFDDIILLSD IVYQGPR+ VL+FFESM
Sbjct: 369 YSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESM 428
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQQQYW + PYRF+T++EF+EA+QSF VG+KL DEL
Sbjct: 429 GFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELA 488
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK K HPAALT + YG+GKKELLK RELLLMKRNSFVY+FK +QL+ MAL++MT
Sbjct: 489 TPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMT 548
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+M +D+ DGGIY GA FF V+M MFNGMS+++MTI KLPVFYKQRDL F+ +WA
Sbjct: 549 LFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWA 608
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YA+P+WILKIP++ +EV +WV LTYYVIGFDPNI R KQFLLL++VNQMAS +FRFI A
Sbjct: 609 YAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGA 668
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR M VA +FGSF LL+ FA GGFVLSRDD+K WW+WGYW SPMMY+ N+I+ NEF G
Sbjct: 669 VGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGK 728
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
W NETLG V+KSRGFFP AYWYW+G+GA +GF ++FN ++L+L +LN F+K
Sbjct: 729 KWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDK 788
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+AV+ ++ E+ + +G SS T ++ D ++
Sbjct: 789 PQAVLPEDGEN-------------AENGEVSSQITSTDGGD----------------SIS 819
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
Q K+GMVLPFEPHS+TFD+V YSVDMP+EMK QG ED+L+LL GVSGAFRPGVLTA
Sbjct: 820 ESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTA 879
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQETF RISGYCEQNDIHSP+VTV
Sbjct: 880 LMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTV 939
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESL+YSAWLRLP +VD +T+KMF++E+MELVEL PLR +LVGLPG +GLSTEQRKRLTI
Sbjct: 940 YESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTI 999
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL
Sbjct: 1000 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1059
Query: 901 FLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 960
FLMKRGGQEIYVGPLGRHSCHLI+YFE PGV IK+GYNPATWMLEVTA +QE+ L ID
Sbjct: 1060 FLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGID 1119
Query: 961 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 1020
FT++YK S+LYRRNKALI EL P PGSKDL+F T Y+QSF+ QCVACLWKQHWSYWRNP
Sbjct: 1120 FTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNP 1179
Query: 1021 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1080
YTAVRF+FTT IAL FGTMFWD+GTK+ ++QDL NAMGSMY AV FLG Q SSVQPVV
Sbjct: 1180 AYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVV 1239
Query: 1081 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1140
A+ER VF RE+ AGMYSA+PYAF QV IEIPYIFV S YGIIVYAMIGFEW KFFWY
Sbjct: 1240 AIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWY 1299
Query: 1141 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200
LF MFF+LLYFTFYGMM VA+TPN ++A+IV+ FYG+WN+FSGF+IPR R+P+WWRWYY
Sbjct: 1300 LFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYY 1359
Query: 1201 WANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFG 1260
WANPVAWT+YGLVASQFGD++ K+ ETV+QF+R YF FKHDFLGVVA V+ A+ +F
Sbjct: 1360 WANPVAWTLYGLVASQFGDIQTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFA 1419
Query: 1261 VLFAVGIKRFNFQNR 1275
FA IK FNFQ R
Sbjct: 1420 FTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1954 bits (5061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 925/1277 (72%), Positives = 1062/1277 (83%), Gaps = 37/1277 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
M LLLGPP SGKTTLLLALAGKLD +LK +GRVTYNGHGM+EFVPQRTAAYI Q+DVHIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRET A++AR QGVGSRYDMLTELARREKEA IKPDPDID++MKA +T G++ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DT+VGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+R +HI NGTA+ISLLQPAPET++LFDDIIL+++ +I+Y+GPR+ V++FFE+M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP RKGVADFLQEVTS+KDQ QYW ++ PYRF+ +EF+EAFQSF VG+++ DEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK KSHPAALTTK YGVG KEL+K + SRE LLMKRNSFVY FK QL MA ++MT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+M K + DG +Y GA FF +MM MFNGMS++SMTIAKLPVFYKQRDL FY AW
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y+LP W+LKIPISF+E A+ F+TYYVIGFDPN+GRLFKQ++LL+L+NQMASALF+ +AA
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRNMIVA +FG+F +LV FA GG VLSRDDIKKWW+WGYW SP+MY QNAI+ANEFFGH
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW + NS+ETLGV LKSRGF PHAYWYW+G GA +GFV+LFN GFTL+LTFLN K
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGK 781
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQR-EVTV 659
P+AVI++E S++ ++L S R E V
Sbjct: 782 PQAVIAEEPASDE-----------------------------------TELQSARSEGVV 806
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
A KKRGMVLPFEPHS+TFD V YSVDMP+EM QG ED+L+LL GV+GAFRPGVLT
Sbjct: 807 EAGANKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLT 866
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
ALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPK Q+TF RISGYCEQ DIHSP VT
Sbjct: 867 ALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVT 926
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLT 839
VYESL+YSAWLRLP EVD +K+FIEE+MELVEL PLRQ+LVGLPGESGLSTEQRKRLT
Sbjct: 927 VYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLT 986
Query: 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 987 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1046
Query: 900 LFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEI 959
LFL+KRGG+EIYVGPLG S HLI YFE I G+ I +GYNPATWMLEV+ SQE L +
Sbjct: 1047 LFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGV 1106
Query: 960 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 1019
DF +YK SELY+RNK LI+ELS+PAPGSKDLYFPT Y+QSF QC+A LWKQHWSYWRN
Sbjct: 1107 DFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRN 1166
Query: 1020 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPV 1079
PPYTAVRFLFT IAL FGTMFWD+G K K QDL NAMGSMYTAV FLG Q +SVQPV
Sbjct: 1167 PPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPV 1226
Query: 1080 VAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFW 1139
V VER VF RE+ AGMYSAMPYAFAQV IEIPY+ V + VYG+IVYAMIGFEW A KFFW
Sbjct: 1227 VNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFW 1286
Query: 1140 YLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1199
YLFFM+ S L FTFYGMM VAMTPNHHIA++VS FYG+WN+FSGF+IPR +P+WW WY
Sbjct: 1287 YLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWY 1346
Query: 1200 YWANPVAWTMYGLVASQFGDVEDKM-ESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1258
YW PVAWT+YGL+ASQFGD+ + M +S +VKQF+R ++ ++ FLGVVA + F +L
Sbjct: 1347 YWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLL 1406
Query: 1259 FGVLFAVGIKRFNFQNR 1275
F V+FA+GIK FNFQ R
Sbjct: 1407 FAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1923 bits (4982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 927/1280 (72%), Positives = 1055/1280 (82%), Gaps = 19/1280 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAG+L LK SG+VTYNGHGM+EFVP+RTAAYISQHD+HIG
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVGSR+DMLTEL+RREK A IKPD DID +MKAAA GQEANV T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIVNS+RQ +HIL GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VL+FFESM
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESM 431
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ+QYW + PYRFVT +EF AFQSF G+ +A+EL
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK KSHPAAL T YG KELLKANI RE+LLMKRNSFVY+F+ QL ++L++MT
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRTKM +DSV+ GGIY+GA FF V+M MFNG S++++T+ KLPVF+KQRDL FY AW+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WILKIPI+F+EV +VFLTYYVIGFD N+G FKQ+LL+L +NQMA +LFRFI
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
A RNMIVA F SF+LL+ GGF+L+R+ +KKWW+WGYW SPMMYAQNAI NE GH
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 SWRKF--TSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K +S SNETLGVQVLKSRG FP A WYW+G GA IGF +LFN FTL+LT+L +
Sbjct: 732 SWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPY 791
Query: 599 EKPRAVISDES---ESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQR 655
R +S+E + +L I G LS+ + +E++ V D
Sbjct: 792 GNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDD-------DT 844
Query: 656 EVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRP 715
EVT +RGMVLPF P SL+FD V YSVDMP+EMK QG+ +D+L LL GVSG+FRP
Sbjct: 845 EVT-------QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRP 897
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHS 775
GVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETF R+SGYCEQNDIHS
Sbjct: 898 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHS 957
Query: 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835
P VTVYESLL+SAWLRLP +VDS T+KMFIEE+MELVEL LR +LVGLPG +GLSTEQR
Sbjct: 958 PQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQR 1017
Query: 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 895
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE
Sbjct: 1018 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFE 1077
Query: 896 SFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQEL 955
+FDELFLMKRGG+EIY GPLG HS LI+YFE IPGV IKDGYNPATWMLEVT QE
Sbjct: 1078 AFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQ 1137
Query: 956 TLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWS 1015
L +DF+DIYK SELY+RNKALI++LS+PAP S DLYFPT Y+QS QC+ACLWKQ+ S
Sbjct: 1138 ALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLS 1197
Query: 1016 YWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSS 1075
YWRNPPY AVRF FTTVIAL FGT+FWD+G K+ ++QDLFNAMGSMY AV F+G C+S
Sbjct: 1198 YWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTS 1257
Query: 1076 VQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAA 1135
VQPVVAVER VF RE+ AGMYSA PYAF QV+IEIPY V ++VYGIIVYAMIGFEW AA
Sbjct: 1258 VQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAA 1317
Query: 1136 KFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLW 1195
KFFWYLFFM F+LLYFTFYGMM V +TPN+HIA+IVS FY +WN+FSGFVIPR R+P+W
Sbjct: 1318 KFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIW 1377
Query: 1196 WRWYYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAF 1255
WRWY WA PVAWT+YGLV SQFGD+E ME G VK FV +YF FKH +LG VA VVAAF
Sbjct: 1378 WRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAF 1437
Query: 1256 AVLFGVLFAVGIKRFNFQNR 1275
A LF LF I +FNFQ R
Sbjct: 1438 AFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1921 bits (4976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 926/1280 (72%), Positives = 1054/1280 (82%), Gaps = 19/1280 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAG+L LK SG+VTYNGHGM+EFVP+RTAAYISQHD+HIG
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVGSR+DMLTEL+RREK A IKPD DID +MKAAA GQEANV T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIVNS+RQ +HIL GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VL+FFES
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFEST 431
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ+QYW + PYRFVT +EF AFQSF G+ +A+EL
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK KSHPAAL T YG KELLKANI RE+LLMKRNSFVY+F+ QL ++L++MT
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRTKM +DSV+ GGIY+GA FF V+M MFNG S++++T+ KLPVF+KQRDL FY AW+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WILKIPI+F+EV +VFLTYYVIGFD N+G FKQ+LL+L +NQMA +LFRFI
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
A RNMIVA F SF+LL+ GGF+L+R+ +KKWW+WGYW SPMMYAQNAI NE GH
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 SWRKF--TSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K +S SNETLGVQVLKSRG FP A WYW+G GA IGF +LFN FTL+LT+L +
Sbjct: 732 SWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPY 791
Query: 599 EKPRAVISDES---ESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQR 655
R +S+E + +L I G LS+ + +E++ V D
Sbjct: 792 GNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDD-------DT 844
Query: 656 EVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRP 715
EVT +RGMVLPF P SL+FD V YSVDMP+EMK QG+ +D+L LL GVSG+FRP
Sbjct: 845 EVT-------QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRP 897
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHS 775
GVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETF R+SGYCEQNDIHS
Sbjct: 898 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHS 957
Query: 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835
P VTVYESLL+SAWLRLP +VDS T+KMFIEE+MELVEL LR +LVGLPG +GLSTEQR
Sbjct: 958 PQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQR 1017
Query: 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 895
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE
Sbjct: 1018 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFE 1077
Query: 896 SFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQEL 955
+FDELFLMKRGG+EIY GPLG HS LI+YFE IPGV IKDGYNPATWMLEVT QE
Sbjct: 1078 AFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQ 1137
Query: 956 TLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWS 1015
L +DF+DIYK SELY+RNKALI++LS+PAP S DLYFPT Y+QS QC+ACLWKQ+ S
Sbjct: 1138 ALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLS 1197
Query: 1016 YWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSS 1075
YWRNPPY AVRF FTTVIAL FGT+FWD+G K+ ++QDLFNAMGSMY AV F+G C+S
Sbjct: 1198 YWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTS 1257
Query: 1076 VQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAA 1135
VQPVVAVER VF RE+ AGMYSA PYAF QV+IEIPY V ++VYGIIVYAMIGFEW AA
Sbjct: 1258 VQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAA 1317
Query: 1136 KFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLW 1195
KFFWYLFFM F+LLYFTFYGMM V +TPN+HIA+IVS FY +WN+FSGFVIPR R+P+W
Sbjct: 1318 KFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIW 1377
Query: 1196 WRWYYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAF 1255
WRWY WA PVAWT+YGLV SQFGD+E ME G VK FV +YF FKH +LG VA VVAAF
Sbjct: 1378 WRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAF 1437
Query: 1256 AVLFGVLFAVGIKRFNFQNR 1275
A LF LF I +FNFQ R
Sbjct: 1438 AFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1868 bits (4839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 900/1283 (70%), Positives = 1042/1283 (81%), Gaps = 28/1283 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTT LLALAG+L LKFSG+VTYNGH M++FVPQRTAAYISQHD+HIG
Sbjct: 206 MTLLLGPPGSGKTTFLLALAGRL-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 264
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FSARCQGVGSR+DMLTEL RREK A IKPD D+D +MKA+A EGQE+N++T
Sbjct: 265 EMTVRETLSFSARCQGVGSRFDMLTELTRREKAANIKPDADVDAFMKASAMEGQESNLIT 324
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGD+MVRGISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTT
Sbjct: 325 DYILKILGLEICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTT 384
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV S+RQ IHIL GTAVISLLQPAPETYDLFDDIILLSD IVYQGPRE VL+FFE M
Sbjct: 385 FQIVKSLRQTIHILGGTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELM 444
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ+QYW + PYR+V +EF+ AFQSF G+ +A+EL
Sbjct: 445 GFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELA 504
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTT YGV ELLKANI RELLL+KRNSFVYIF+ QL +++ ++MT
Sbjct: 505 TPFDKSKSHPAALTTSRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMT 564
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+FFRTKMH+DSV+DG I++GA FFAVMM M NG+S++ +TI KLPVF+KQRDL F+ AW
Sbjct: 565 VFFRTKMHRDSVADGVIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWT 624
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WILK P+SF+EV + F++YYVIGFDPN+GR FKQ+LL+L V+QMA+ALFRF+
Sbjct: 625 YTIPSWILKSPMSFIEVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGG 684
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
A RN+IVA FGSF+LL+ GGF+L+RD + KWW+WGYW SPMMYAQNA+ NEF GH
Sbjct: 685 AARNLIVANVFGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGH 744
Query: 541 SWRKFTSN--SNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K +N SNETLGVQ L SRG FP A WYW+G GA +GF++LFNI FTL+LT+L
Sbjct: 745 SWDKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPD 804
Query: 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNS------SHKTCSESEDITVKDSFSQLL 652
K + IS+E N G + T S++ S T SE D +
Sbjct: 805 GKSQPSISEEELKEKQANINGNVLDVDTMASSNNLAIVGSTGTGSEIADNS--------- 855
Query: 653 SQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGA 712
QP +RGMVLPF P SLTF+++ YSVDMP+EMK GI+ED+L LL GVSG
Sbjct: 856 ----------QPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGC 905
Query: 713 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQND 772
FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI+ISGYPKKQETF R+SGYCEQND
Sbjct: 906 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQND 965
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
IHSP VTV ESLL+SAWLRLP +VDS T+KMFIEE+MELVEL PLR +LVGLPG +GLS
Sbjct: 966 IHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSI 1025
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 892
EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSID
Sbjct: 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSID 1085
Query: 893 IFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKS 952
IFE+FDELFLMKRGG+EIYVGPLG HS LI+YFEGI GV I DGYNPATWMLEVT S
Sbjct: 1086 IFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVS 1145
Query: 953 QELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQ 1012
QE L++DF DIY+ SEL++RNKALI+ELS P PGS +LYFPT Y+QSF +QC+ACLWKQ
Sbjct: 1146 QEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQ 1205
Query: 1013 HWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQY 1072
H SYWRNPPY A+R FTTVIAL FGT+FWD+G KM ++QDLFNAMGSMY AV F+G
Sbjct: 1206 HLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLN 1265
Query: 1073 CSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEW 1132
SVQPVV+VER VF RE+ AGMYSA+PYAF QV IE PY V S +Y IIVY+MIGF+W
Sbjct: 1266 GQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQW 1325
Query: 1133 IAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRI 1192
AKFFWYLFFMFF+LLYFTFYGMM V +TP++H+A+IVS FY +WN+F+GFVI R
Sbjct: 1326 TVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPAT 1385
Query: 1193 PLWWRWYYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVV 1252
P+WWRWY W PVAWT+YGL+ SQ+GD+ M+ G V FV +YFDFKH +LG VAVV+
Sbjct: 1386 PVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVFVENYFDFKHSWLGFVAVVI 1445
Query: 1253 AAFAVLFGVLFAVGIKRFNFQNR 1275
AF +LF LF I + NFQ R
Sbjct: 1446 VAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1860 bits (4819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 906/1277 (70%), Positives = 1052/1277 (82%), Gaps = 15/1277 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAG+L +KFSG+VTYNGH M++FVPQRTAAYISQHD+HIG
Sbjct: 201 MTLLLGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 260
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FSARCQGVGSR+DMLTEL+RREK A IKPD DID +MKA+A EGQE N++T
Sbjct: 261 EMTVRETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLIT 320
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+MVRGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 321 DYILKILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 380
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV S+RQ IHIL GTAVISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFE M
Sbjct: 381 FQIVKSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELM 440
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ+QYW+ + PYR+V ++F+ AFQSF G+ +A+EL
Sbjct: 441 GFKCPERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELA 500
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK K+HPAALTT YGV ELLKANI RE LLMKRNSFVYIF+ QL ++ ++MT
Sbjct: 501 TPFDKSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMT 560
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+FFRTKMH+DSV+DG I++GA FF+VMM MFNG+S++ +TI KLPVF+KQRDL F+ AW
Sbjct: 561 VFFRTKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWT 620
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WILKIP+SF+EV +VF++YYVIGFDP+ GR FKQ+LL+L +NQMA+ALFRF+
Sbjct: 621 YTIPSWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGG 680
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
A RNMIVA FGSF+LL+ GGF+L R+ +KKWW+WGYW SPMMYAQNAI NEF GH
Sbjct: 681 AARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGH 740
Query: 541 SWRKFTSN--SNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K +N SNETLGVQ L+SRG FP A WYW+G GA +GF++LFN FTL+LT+L +
Sbjct: 741 SWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPY 800
Query: 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
K + +S+E N G + T S+++ +E + E+
Sbjct: 801 GKSQPSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTE------------TSSEIA 848
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
+ QP +RGMVLPF P SLTFD + YSVDMP+EMK GI+ED+L LL GVSG+FRPGVL
Sbjct: 849 DNS-QPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVL 907
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETF R+SGYCEQNDIHSP V
Sbjct: 908 TALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQV 967
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TV ESLL+SAWLRLP +VDS T+KMFIEE+MELVEL PLR +LVGLPG +GLSTEQRKRL
Sbjct: 968 TVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRL 1027
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 1028 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1087
Query: 899 ELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLE 958
ELFLMKRGG+EIYVGPLG S LI+YFEGI GV IKDGYNPATWMLEV+ SQE L
Sbjct: 1088 ELFLMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALG 1147
Query: 959 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 1018
+DF DIY+ SEL++RNKALI+ELS P PGS +LYFPT Y+ SF QC+ACLWK H SYWR
Sbjct: 1148 VDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWR 1207
Query: 1019 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1078
NPPY A+R FTTVIAL FGT+FWD+G K ++QDLFNAMGSMY+AV F+G SVQP
Sbjct: 1208 NPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQP 1267
Query: 1079 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1138
VV+VER VF RE+ AGMYSA PYAF QV IE PY V S +YGIIVY+MIGF+W AAKFF
Sbjct: 1268 VVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFF 1327
Query: 1139 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1198
WYLFFMFF+ LYFTFYGMM V +TP++H+A+IVS FYG+WN+FSGF+IPR ++P+WWRW
Sbjct: 1328 WYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRW 1387
Query: 1199 YYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1258
Y W PVAWT+YGLVASQFGD+ M+ G VK FV +YFDFKH +LGVVAVV+ AF +L
Sbjct: 1388 YCWICPVAWTLYGLVASQFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTML 1447
Query: 1259 FGVLFAVGIKRFNFQNR 1275
F LF I + NFQ R
Sbjct: 1448 FAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1847 bits (4785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 910/1276 (71%), Positives = 1082/1276 (84%), Gaps = 33/1276 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLDS LK +G+VTYNGH + EFVPQRTAAYISQHD+HIG
Sbjct: 193 MTLLLGPPGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIG 252
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL FSARCQGVGSRY+ML EL+RREK A IKPD DID++MKAA+TEGQEA V+T
Sbjct: 253 EMTVRETLEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVT 312
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 313 DYILKILGLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTT 372
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+ IVNS++Q++ I+ GTA+ISLLQPAPETY+LFDDIILLSD IVY+GPRE VL+FFESM
Sbjct: 373 YSIVNSLKQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESM 432
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKG ADFLQEVTS+KDQQQYW+ ++ PYRF+T++EF+EA+QSF VG+K++DEL+
Sbjct: 433 GFKCPERKGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELK 492
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
T FDK KSHPAALTT+ YG+GK++LLK RELLLM+RNSFVY+FK QL +AL++MT
Sbjct: 493 TTFDKSKSHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMT 552
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+FFRTKM +DS DGGIY GA FF V+M MFNG+S++ MT+ KLPVFYKQRD FY +WA
Sbjct: 553 IFFRTKMPRDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWA 612
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YA+P+WILKIP++F EV +WVFLTYYV+GFDPN+GR FKQFLLLLLVNQMASALFRFIAA
Sbjct: 613 YAIPSWILKIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAA 672
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR M VA +FG+F LL+ FA GGF+L+R+D+K WW+WGYW SP+MY+ NAI+ NEF G
Sbjct: 673 VGRTMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQ 732
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
W+ + E LG V+++RGFFP AYWYW+G+GA GF+++FNI ++++L +LN F+K
Sbjct: 733 KWKHIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDK 792
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+A ISDESE+N+ + + Q++ S+ + S SE+
Sbjct: 793 PQATISDESENNESES----SPQIT-----STQEGDSASEN------------------- 824
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
KK+GMVLPF+PHS+TFDEV YSVDMP EM+ G +++L+LL VSGAFRPGVLTA
Sbjct: 825 ----KKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTA 880
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQ+TF RISGYCEQNDIHSP+VTV
Sbjct: 881 LMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTV 940
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
+ESL+YSAWLRLP +V+ E + MF+EE+M+LVEL PLR +LVGLPG +GLSTEQRKRLTI
Sbjct: 941 FESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTI 1000
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900
AVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFE+FDEL
Sbjct: 1001 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1060
Query: 901 FLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 960
FLMKRGGQEIYVGPLGR SCHLI+YFE IPGV I +GYNPATWMLEVTA SQE+ L +D
Sbjct: 1061 FLMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVD 1120
Query: 961 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 1020
FTD+YK S+LYRRNKALI+ELS P PG+ DL+F + ++Q F+ QC+ACLWKQHWSYWRNP
Sbjct: 1121 FTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNP 1180
Query: 1021 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1080
YTAVR +FTT IAL FGTMFWD+GTK+ RNQDL NAMGSMY AV FLG Q SSVQPVV
Sbjct: 1181 AYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVV 1240
Query: 1081 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1140
+VER VF REK AGMYSA+PYAFAQV+IEIPYIFV ++VYG+IVY+MIGFEW AKFFW
Sbjct: 1241 SVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWD 1300
Query: 1141 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200
FFMFF+ LYFTF+GMMTVA+TPN ++A+IV+ FY +WN+FSGF++PR RIP+WWRWYY
Sbjct: 1301 FFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYY 1360
Query: 1201 WANPVAWTMYGLVASQFGDVEDKM-ESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLF 1259
W P+AWT+YGLVASQFGD++D + + +TV+QF+RS F FKHDFLGVVA V+ AFAV+F
Sbjct: 1361 WGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVF 1420
Query: 1260 GVLFAVGIKRFNFQNR 1275
FA+GIK FNFQ R
Sbjct: 1421 AFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1843 bits (4773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1276 (69%), Positives = 1036/1276 (81%), Gaps = 12/1276 (0%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LK SG+VTYNGHGM EFVP+RTAAYISQHD+HIG
Sbjct: 186 MTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIG 245
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG+RY+MLTELARREK A IKPD DID+YMKA+A GQE++V+T
Sbjct: 246 EMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVT 305
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VG+EM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 306 DYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 365
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHIL GTAVISLLQPAPETY+LFDDIILLSD Q+VYQGPRE VL+FFE M
Sbjct: 366 YQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFM 425
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CP RKGVADFLQEVTSRKDQ QYW ++ PYRFV ++F++AF+SF VG+ + +EL
Sbjct: 426 GFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELS 485
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFD+ +SHPAAL T YGV +KELLKA I RELLLMKRN+F+YIFK L+ MAL+ MT
Sbjct: 486 EPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMT 545
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
FFRT M D G IY+GA +FA+ MFNG ++++MT+ KLPVF+KQRDL F+ AWA
Sbjct: 546 TFFRTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWA 604
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WIL+IPI+FLEV V+VF+TYYVIGFDP++ R FKQ+LLLL +NQM+SALFRFIA
Sbjct: 605 YTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAG 664
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR+M+V+ +FG LL A GGF+L+R D+KKWW+WGYW SP+ YAQNAI NEF GH
Sbjct: 665 IGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGH 724
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW + N TLGV VLKSRG F A WYW+GLGA +G+ LLFN+ +T++L+ L+ F
Sbjct: 725 SWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTD 784
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
A +S+++ N G + G + E E + D S + S
Sbjct: 785 SHASMSEDALKEKHANLTGEVVE----GQKDTKSRKQELELSHIADQNSGINSADS---- 836
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
++GMVLPF P S++F++V YSVDMP+ MK QGI ED+L+LL GVSG+FRPGVLTA
Sbjct: 837 --SASRKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTA 894
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETF RISGYCEQNDIHSP VTV
Sbjct: 895 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTV 954
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESL++SAWLRLP EVDSE +KMFIEE+M+LVEL LR +LVGLPG SGLSTEQRKRLTI
Sbjct: 955 YESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTI 1014
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE+FDEL
Sbjct: 1015 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDEL 1074
Query: 901 FLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 960
FLMKRGG+EIYVGP+G++S LI YFEGI GV IKDGYNPATWMLEVT+ +QE L +D
Sbjct: 1075 FLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVD 1134
Query: 961 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 1020
F++IY+ SELY+RNK LIEELS P PGS DL FPT Y++SF QC+ACLWKQ+WSYWRNP
Sbjct: 1135 FSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNP 1194
Query: 1021 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1080
YTAVR LFT VIAL FGTMFW++GT+ K+ QDLFNAMGSMY AV ++G Q SVQPVV
Sbjct: 1195 SYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVV 1254
Query: 1081 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1140
VER VF RE+ AGMYSA PYAF QV IE+PYI V + +YG++VY+MIGFEW AKF WY
Sbjct: 1255 VVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWY 1314
Query: 1141 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200
LFFM+F+LLYFTFYGMM V +TPN IAAI+S FY +WN+FSG++IPR +IP+WWRWY
Sbjct: 1315 LFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYC 1374
Query: 1201 WANPVAWTMYGLVASQFGDVEDKMESG-ETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLF 1259
W PVAWT+YGLVASQFGD++ +E TV QFV YF F H+FL VVAVV FAV F
Sbjct: 1375 WICPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTF 1434
Query: 1260 GVLFAVGIKRFNFQNR 1275
LF+ I +FNFQ R
Sbjct: 1435 AFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1837 bits (4759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 892/1278 (69%), Positives = 1053/1278 (82%), Gaps = 18/1278 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
M+LLLGPP SGKT+LLLALAGKLDS LK SGRVTYNGH MDEFVPQRT+AYI QHD+HIG
Sbjct: 182 MSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG+RYDMLTEL+RREKEA IKPDPDIDVYMKA + EGQE+ V+T
Sbjct: 242 EMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVT 300
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGD M+RGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 301 DYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 360
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ++HIL GTA+I+LLQPAPETYDLFDDI+LLS+ QIVYQGPRE +L+FFE+M
Sbjct: 361 YQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAM 420
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ QYW ++ PYR+++ +FSEAF+ F VG+ L ELR
Sbjct: 421 GFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELR 480
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFD+ ++HPAALTT YG+ K EL KA SRE LLMKRNSFVYIFK+ QL + + MT
Sbjct: 481 VPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMT 540
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RTKMH+ SV DG I++GA F ++ +FNG ++++M+IAKLP+FYKQRDL FY +WA
Sbjct: 541 VFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWA 600
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP W+LKIPISFLE AVW+ +TYYV+GFDPNI R F+ ++LL+L++QMAS LFR +AA
Sbjct: 601 YALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAA 660
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR M+VA +FGSF L+L GGF++SR++IKKWW+WGYW SP+MYAQNAI NEF GH
Sbjct: 661 LGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGH 720
Query: 541 SWRKFT--SNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K + SN+TLGVQVLK RG F A WYW+G+GA +G+++LFNI F L L +L+
Sbjct: 721 SWNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPL 780
Query: 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
K +AV+S+E NR G +L T G++S ++S S + R
Sbjct: 781 GKGQAVVSEEELREKHVNRTGENVELLTLGTDS-------------QNSPSDANAGRGEI 827
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
GA +KRGMVLPF P S+TFD + YSVDMP+EMK +G+ ED+L+LL GVSGAFRPGVL
Sbjct: 828 TGA-DTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVL 886
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI G+I+ISGYPKKQETF RI+GYCEQNDIHSP V
Sbjct: 887 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHV 946
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TVYESLLYSAWLRLP EVDSE +KMF+EE+MELVEL LR +LVGLPG +GLSTEQRKRL
Sbjct: 947 TVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRL 1006
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 1007 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1066
Query: 899 ELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLE 958
ELFLMKRGG+EIYVGPLG +SCHLI YFEGI GV IKDGYNPATWMLEVT +QE L
Sbjct: 1067 ELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILG 1126
Query: 959 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 1018
I+F ++Y+ S+LY+RNK LI ELS P PGS DL+FPT ++Q FF QC+ACLWKQH SYWR
Sbjct: 1127 INFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWR 1186
Query: 1019 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1078
NP YTA R FTTVIAL FGT+F ++G K+ + DLFN++GSMY AV F+G Q +VQP
Sbjct: 1187 NPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQP 1246
Query: 1079 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1138
+V VER VF REK AGMYSA+PYAFAQV+IEIP+IF+ + VYG+IVY++IGF+W KFF
Sbjct: 1247 IVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFF 1306
Query: 1139 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1198
WY+FFMFF+ +YFTFYGMM VAMTPN IAAIVS FY +WN+F+GF+IPR RIP+WWRW
Sbjct: 1307 WYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRW 1366
Query: 1199 YYWANPVAWTMYGLVASQFGDVEDK-MESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAV 1257
Y WA PVAWT+YGLVASQ+GD+ + +E GE V+ ++R YF F+HD+LG VA V FA
Sbjct: 1367 YSWACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAA 1426
Query: 1258 LFGVLFAVGIKRFNFQNR 1275
LF +FA IK FNFQ R
Sbjct: 1427 LFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1794 bits (4647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1276 (68%), Positives = 1042/1276 (81%), Gaps = 21/1276 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP +GKTTLLLALAGKLD+ LK +G VTYNGHGM EFVPQRT+AYISQHDVHIG
Sbjct: 186 MTLLLGPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIG 245
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFS+RCQGVG+RY+MLTEL+RREKEA IKPDPD+DVYMKA A EGQE+ V+T
Sbjct: 246 EMTVRETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVT 304
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 305 DYILKILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 364
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIVNS+RQ++HIL GTA+I+LLQPAPETYDLFDDI+LLSD QIVYQGPRE VL+FFESM
Sbjct: 365 FQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESM 424
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQQQYWV + PYRFV EFSEAF+SF VG KL +EL
Sbjct: 425 GFKCPERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELS 484
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFD+ ++HPAALTT YG+ K ELLKA I RE LLMKRNSFVYIFK+ QL +AL++MT
Sbjct: 485 TPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMT 544
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+FFRTK+ ++ + D I+ GA F ++ +FNG ++++M+IAKLPVFYKQRDL FY WA
Sbjct: 545 VFFRTKLPRNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWA 604
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP WILKIPISF+E VW+ +TYYVIGFDPN+ R+F+ +LLL+L++Q+AS LFR +AA
Sbjct: 605 YALPTWILKIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAA 664
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR+M+VA +FG+F LVL GGF+++R+ IKK+W+WGYW SP+MYAQNAI NEF GH
Sbjct: 665 VGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGH 724
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW K + +TLG + L++RG F WYW+G+GA IG+++LFN F L L +L+ K
Sbjct: 725 SWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGK 784
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
+ +S+E+ NR G +L+T GS ++ S+ + ++ +
Sbjct: 785 GQTTVSEEALQEKEANRTGANVELATRGSAAT----SDGGSVEIRKDGN----------- 829
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
+K+GMVLPF P S+TFD V YSVDMP+EMK +G+ EDKL+LL GVSGAFRPGVLTA
Sbjct: 830 ----RKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTA 885
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSG GKTTLMDVLAGRKTGGYI G+I ISGYPK QETF RISGYCEQNDIHSP VTV
Sbjct: 886 LMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTV 945
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESLLYSAWLRLP EVD + +KMF++E+M+LVELN LR SLVGLPG +GLSTEQRKRLTI
Sbjct: 946 YESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTI 1005
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900
AVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFE+FDEL
Sbjct: 1006 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1065
Query: 901 FLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 960
FLMKRGG+EIYVGPLGR S HLI+YFE I GV+ IK+ YNPATWMLEVT SQE L ++
Sbjct: 1066 FLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLN 1125
Query: 961 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 1020
F ++Y+ S+LY+RNK LI+ELS P PGSKDL+F T ++QSF MQC+ACLWKQH SYWRNP
Sbjct: 1126 FAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNP 1185
Query: 1021 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1080
YTA R FT VIAL FGT+FWD+G K + DL NAMGSMY AV F+G Q +VQP+V
Sbjct: 1186 SYTATRLFFTVVIALIFGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIV 1245
Query: 1081 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1140
VER VF REK AGMYSA+PYA+AQV+IE+P+I V + +YG++VY+MIGF+W AAKF WY
Sbjct: 1246 DVERTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWY 1305
Query: 1141 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200
+FFMFF+ LYFT+YGMM VAMTPN IAAIV+ FY +WN+F+GF+IPR RIP+WWRWYY
Sbjct: 1306 MFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYY 1365
Query: 1201 WANPVAWTMYGLVASQFGDVEDKM-ESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLF 1259
WA PVAWT+YGLV SQFG+ D M + ETVK F+R + F+HDFL VV V+V F VLF
Sbjct: 1366 WACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLF 1425
Query: 1260 GVLFAVGIKRFNFQNR 1275
+FA IK NFQ R
Sbjct: 1426 ASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1275 | ||||||
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.986 | 0.871 | 0.748 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.978 | 0.873 | 0.758 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.996 | 0.404 | 0.768 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.996 | 0.877 | 0.732 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.996 | 0.864 | 0.756 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.996 | 0.875 | 0.764 | 0.0 | |
| 224054164 | 1424 | pleiotropic drug resistance, ABC transpo | 0.971 | 0.870 | 0.751 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.977 | 0.873 | 0.736 | 0.0 | |
| 256538311 | 1451 | pleiotropic drug resistance protein [Cuc | 0.996 | 0.875 | 0.731 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.975 | 0.872 | 0.738 | 0.0 |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2036 bits (5275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1278 (74%), Positives = 1092/1278 (85%), Gaps = 20/1278 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LKFSG VTYNGHGM+EF+PQ TAAYISQHD+HIG
Sbjct: 183 MTLLLGPPSSGKTTLLLALAGKLDPNLKFSGNVTYNGHGMNEFIPQSTAAYISQHDLHIG 242
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FS RCQGVG+R DML EL+RREK A IKPDPDIDV+MKA ATEGQE NV+T
Sbjct: 243 EMTVRETLSFSVRCQGVGTRNDMLVELSRREKAANIKPDPDIDVFMKAVATEGQETNVVT 302
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DTLVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 303 DYVLKILGLEVCADTLVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 362
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS++Q IHIL+GTAVISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFE M
Sbjct: 363 YQIVNSLKQTIHILDGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYM 422
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTS+ DQ+QYWV K+ PY FVT QEFSEAFQS+ VGQ + EL
Sbjct: 423 GFKCPERKGVADFLQEVTSKNDQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELS 482
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAAL + YGV K ELLKA +RE LLMKRNSFVYIFKLTQL MA++SMT
Sbjct: 483 TPFDKSKSHPAALAARKYGVDKMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMT 542
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+MH++ ++D G+Y+GA FF+++ MFNGMS++SMTIAKLPVFYKQRDL+FY WA
Sbjct: 543 LFLRTEMHREDLTDAGVYLGALFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWA 602
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP WILKIPI+F EV VWVF+TYYVIGFDPN+ RLFKQ+ LLL+VNQMAS LFRFIAA
Sbjct: 603 YALPTWILKIPITFFEVGVWVFITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAA 662
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRNMIVA +FGSF LL +FA GG VLSRDDIKKWW WGYW SPMMY QNA+VANEF G
Sbjct: 663 VGRNMIVANTFGSFALLTVFALGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGE 722
Query: 541 SWRKFTSNSNET--LGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW +NS T LGVQ +KSRGFFPHAYWYW+G+GA GF +LFN+ FTL+LT LN +
Sbjct: 723 SWNHVPANSTSTDSLGVQFIKSRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLNPY 782
Query: 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
EKP AVISDE E +D R GG QLS +GS SH+T +E+ + ++ +T
Sbjct: 783 EKPHAVISDEPERSD---RTGGAIQLSQNGS--SHRTITEN-GVGIR-----------MT 825
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
A Q KK+GMVLPFEPHS+TF++V YSVDMP+EMK QGI +DKL+LL GVSGAF+PGVL
Sbjct: 826 DEANQNKKKGMVLPFEPHSITFNDVMYSVDMPQEMKSQGIADDKLVLLKGVSGAFKPGVL 885
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQ+TF RISGYCEQNDIHSP V
Sbjct: 886 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQDTFARISGYCEQNDIHSPHV 945
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TVYESL+YSAWLRL PEVD ET+KMF+ E+MELVELNPLRQ+LVGLPG +GLSTEQRKRL
Sbjct: 946 TVYESLIYSAWLRLAPEVDPETRKMFVNEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 1005
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TI+VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID+FE+FD
Sbjct: 1006 TISVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDLFEAFD 1065
Query: 899 ELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLE 958
ELFLMKRGG+EIYVGPLGRHSCH+I YFE I G +KDGYNPATWMLEVT+ +QEL+L
Sbjct: 1066 ELFLMKRGGEEIYVGPLGRHSCHMIDYFEVIEGASKVKDGYNPATWMLEVTSSAQELSLG 1125
Query: 959 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 1018
+DF IYK SELYRRNKA+I+ELS PGSKDLYFPT Y+QSF QC+ACLWKQ SYWR
Sbjct: 1126 VDFATIYKNSELYRRNKAIIKELSTSVPGSKDLYFPTQYSQSFLTQCIACLWKQRLSYWR 1185
Query: 1019 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1078
NPPYTAVRFLFTT IAL FGTMFWD+G+K + QD+FN+ GSMY AV FLG Q +SVQP
Sbjct: 1186 NPPYTAVRFLFTTFIALMFGTMFWDLGSKTRTQQDIFNSAGSMYAAVVFLGTQNAASVQP 1245
Query: 1079 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1138
VVA+ER VF RE+ AGMYSA+PYA+AQV++EIPYIF + VYG++ Y+MIGFEW AAKFF
Sbjct: 1246 VVAIERTVFYRERAAGMYSALPYAYAQVLVEIPYIFAQAVVYGLLTYSMIGFEWTAAKFF 1305
Query: 1139 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1198
WY+FFM+F+L+YFT+YGMM VA+TPNHHIA++VS FYG+WN+FSGF++PRTR+P+WWRW
Sbjct: 1306 WYIFFMYFTLMYFTYYGMMAVAVTPNHHIASVVSSAFYGIWNLFSGFIVPRTRMPVWWRW 1365
Query: 1199 YYWANPVAWTMYGLVASQFGDVEDKMESG-ETVKQFVRSYFDFKHDFLGVVAVVVAAFAV 1257
YYW PV+WT+YGL+ SQF D++D E G +TV+ FVR Y+ +HDFLGVVA V+ V
Sbjct: 1366 YYWVCPVSWTLYGLIGSQFSDIKDAFEGGSQTVEDFVREYYGIRHDFLGVVAAVIVGTTV 1425
Query: 1258 LFGVLFAVGIKRFNFQNR 1275
LF +FAV IK FNFQ R
Sbjct: 1426 LFAFIFAVSIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2029 bits (5256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 967/1275 (75%), Positives = 1093/1275 (85%), Gaps = 27/1275 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD KLKFSGRVTYNGH M+EFVPQRTAAYISQHD HIG
Sbjct: 182 MTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAF+ARCQGVG RY+M++EL RREK + IKPDPDIDV+MKA ATEGQEANV+T
Sbjct: 242 EMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVT 301
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC D +VG+EM+RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTT 361
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNSI+Q IHILNGTAVISLLQP PETY+LFDDIILLSD QIVYQGPRE VL+FFE M
Sbjct: 362 YQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYM 421
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ QYW K+ PY FVT +EF+EAFQSF VG++L EL
Sbjct: 422 GFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELS 481
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTTK YGVGK ELLKA SRE+LLMKRNSFVYIFKLTQL+ MA+V+MT
Sbjct: 482 TPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMT 541
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+MH+DSV++GGIYVGA FF+V+ MFNG+S+IS+TIAKLPVFYKQR L FY WA
Sbjct: 542 LFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWA 601
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
++LP WI KIPI+ ++VA+WVFLTYYVIGFDPN+GR FKQ+LLL LV+QMAS LFRFIAA
Sbjct: 602 FSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAA 661
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
AGRNMIVA +FGSF LL LFA GGF+LSRD+IKKWW+WGYW SP+MY QNAIV NEF G+
Sbjct: 662 AGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGN 721
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW K ++ ETLG+QVL+SRGFF HAYWYW+G+GA +GF LL+N FTL+LTFL +K
Sbjct: 722 SWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQK 781
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+AVIS++S SN G + G QLS+ + E+ V
Sbjct: 782 PQAVISEDSASNTSG-KTGEVIQLSS--------------------------VRTELIVE 814
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
K++GMVLPFEPHS+TF+++ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLTA
Sbjct: 815 ENHQKQKGMVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTA 874
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETF RISGYCEQNDIHSP VTV
Sbjct: 875 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTV 934
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESLLYS+WLRLPPEV+SET+KMFIEE+MELVEL PLRQ+LVGLPG SGLSTEQRKRLTI
Sbjct: 935 YESLLYSSWLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTI 994
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL
Sbjct: 995 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1054
Query: 901 FLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 960
LMKRGGQEIYVGPLGRHSC LI+YFE I GV +IKDGYNPATWMLEV++ +QE+ L +D
Sbjct: 1055 LLMKRGGQEIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLD 1114
Query: 961 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 1020
F IYK SELYRRNKALIEELS P GS DLYFPT Y+QSFF QC+ACLWKQHWSYWRNP
Sbjct: 1115 FAAIYKNSELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNP 1174
Query: 1021 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1080
PYTAVRFLFTTVIAL FGTMFWD+G+K + QDLFNAMGSMY A+ FLG Q SSVQPVV
Sbjct: 1175 PYTAVRFLFTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVV 1234
Query: 1081 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1140
AVER VF RE+ AGMYS +PYAFAQV+IE+PYIF+ ++VYG+IVYAMIGFEW AAKFFWY
Sbjct: 1235 AVERTVFYRERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWY 1294
Query: 1141 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200
LFFM+F+LL++T+YGMM VA+TPN +A+IVS FY +WN+FSGF+IPR RIP+WWRWY
Sbjct: 1295 LFFMYFTLLFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYA 1354
Query: 1201 WANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFG 1260
W PVA+T+YGLV+SQFGD++ +ESGETV+ FVRSYFDFKH+ LG VA V FA LF
Sbjct: 1355 WTCPVAYTLYGLVSSQFGDIKHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFA 1414
Query: 1261 VLFAVGIKRFNFQNR 1275
FA IK FNFQ R
Sbjct: 1415 FTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2023 bits (5240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1279 (76%), Positives = 1111/1279 (86%), Gaps = 8/1279 (0%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLAL+GKLDS LK +G+VTYNGHGM+EFVPQRTA YISQHD HIG
Sbjct: 1868 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 1927
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG RYDML EL+RREK A IKPDPDIDV+MKA ATEGQ+ NV+T
Sbjct: 1928 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVIT 1987
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DTLVGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 1988 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 2047
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD+QIVYQGPRE VLDFFESM
Sbjct: 2048 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 2107
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEVTSRKDQQQYW K+ PY FVT +EF+EAFQSF +G+KL EL
Sbjct: 2108 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELA 2167
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAAL T+ YGV KKELL A ISRE LLMKRNSFVYIFKLTQL MA +SMT
Sbjct: 2168 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMT 2227
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+MHK+S DG IY GA FF V+M MFNGMS+++MTIAKLPVFYKQR L FY AWA
Sbjct: 2228 IFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 2287
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP+WILKIPI+F+EVAVWVF++YYVIGFDPN+GRLFKQ+LLL+LVNQMASALFRFIAA
Sbjct: 2288 YALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 2347
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
AGRNMIVA +FGSF LL+LFA GGFVLSR+++KKWW+WGYW SP+MYAQNAIV NEF G
Sbjct: 2348 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 2407
Query: 541 SWRKFTS-NSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
SW K +S +S E+LGV VLKSRGFF AYWYW+G GA +GF+L+FN +T++LT+LN FE
Sbjct: 2408 SWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFE 2467
Query: 600 KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCS--ESEDITVKDSFSQLLSQREV 657
KP+AVI++ESE++ + GG +LS+H S +T S ++I S + + E
Sbjct: 2468 KPQAVITEESENS----KTGGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEA 2523
Query: 658 TVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGV 717
A + K+GMVLPF+P S+TFD++ YSVDMP+EMK QG+LED+L LL GVSGAFRPGV
Sbjct: 2524 IAEARRNNKKGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGV 2583
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
LTALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETF RISGYCEQNDIHSP
Sbjct: 2584 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPH 2643
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837
VT++ESLLYSAWLRLP +VDS+T+KMFIEE+MELVEL PL+ SLVGLPG +GLSTEQRKR
Sbjct: 2644 VTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKR 2703
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 897
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+F
Sbjct: 2704 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 2763
Query: 898 DELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTL 957
DEL L+KRGGQEIYVGPLGRHS HLI+YF+GI GV IKDGYNPATWMLEVT+ +QE L
Sbjct: 2764 DELLLLKRGGQEIYVGPLGRHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLL 2823
Query: 958 EIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYW 1017
+DFT+IYK S+LYRRNK LI+ELS+PAPGSKDLYFPT Y+QSFF QC+ACLWKQ SYW
Sbjct: 2824 GVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYW 2883
Query: 1018 RNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQ 1077
RNPPYTAVRF FTT IAL FGTMFWD+GTK K+ QDL NAMGSMY AV FLG Q SSVQ
Sbjct: 2884 RNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQ 2943
Query: 1078 PVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKF 1137
PVVAVER VF RE+ AGMYSAMPYAFAQ ++EIPY+F + VYG+IVYAMIGFEW AAKF
Sbjct: 2944 PVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKF 3003
Query: 1138 FWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWR 1197
FWYLFFMFF+LLYFTFYGMM VA TPN HIAAIV+ FYGLWN+FSGF++PRTRIP+WWR
Sbjct: 3004 FWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWR 3063
Query: 1198 WYYWANPVAWTMYGLVASQFGDVEDKME-SGETVKQFVRSYFDFKHDFLGVVAVVVAAFA 1256
WYYWA PVAWT+YGLV SQFGD++D+ E +G+TV+Q++ YF F+HDFLGVVA V+ F
Sbjct: 3064 WYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFT 3123
Query: 1257 VLFGVLFAVGIKRFNFQNR 1275
VLF +FA IK FNFQ R
Sbjct: 3124 VLFLFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2012 bits (5212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 934/1275 (73%), Positives = 1082/1275 (84%), Gaps = 4/1275 (0%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKL LKFSGRVTYNGHGM+EFVPQRT+AYISQ+D+HIG
Sbjct: 179 MTLLLGPPSSGKTTLLLALAGKLTKDLKFSGRVTYNGHGMEEFVPQRTSAYISQYDIHIG 238
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVGSRY+ML ELARREKEA IKPDPDID+YMKAAA EGQEANV+T
Sbjct: 239 EMTVRETLAFSARCQGVGSRYEMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVT 298
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DTLVGDEM RGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDS+TT
Sbjct: 299 DYILKILGLELCADTLVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTT 358
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIVNS+RQ++HIL+GTA+I+LLQPAPET++LFDDIILLSD QIVYQGPRE VLDFFE M
Sbjct: 359 FQIVNSLRQSVHILSGTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYM 418
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ+QYW HK+ PY FV+ EFSEAFQSF +G+KL DEL
Sbjct: 419 GFKCPERKGVADFLQEVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELA 478
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK K+HP +LTTK YGV KKEL KA ISRE LLMKRNSFVYIFK+TQL + ++MT
Sbjct: 479 TPFDKSKAHPDSLTTKKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMT 538
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+MH+++ +DGG+Y+GA FF V MFNG S+++MTI KLPVFYKQRDL FY +WA
Sbjct: 539 LFLRTEMHRNTETDGGVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWA 598
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP WILKIPI+F+EVAVWV +TYYVIGFDPNI R FKQ+L+LL+ NQMASALFR AA
Sbjct: 599 YALPTWILKIPITFVEVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAA 658
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRN+IVA + G+F +L GGFV+SRD++KKWW+WGYW SPMMY QNAI NEF G
Sbjct: 659 LGRNIIVANTVGAFAMLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGS 718
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW F NS + LGV +LKSRG FP AYWYW+G GA G++ LFN FTL+L +L+ F K
Sbjct: 719 SWNHFPPNSTKPLGVTLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGK 778
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+A+IS E+ S R G +LS+ N + + + + S +++ S
Sbjct: 779 PQAIISKEAYSEKTAVRTGEFIELSSKEKNFQERGSASHRVASSRTSSARVSSLS----N 834
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
A + KRGMVLPF+P S+TF +V Y+V MP+EMK QGI ED+L LL GVSGAFRPGVLTA
Sbjct: 835 AFENSKRGMVLPFQPLSITFADVRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPGVLTA 894
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETF RISGYCEQ DIHSP VTV
Sbjct: 895 LMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTV 954
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESLLYSAWLRLPPEVDS+T+ MF+EE+MELVEL LR++LVGLPG +GLS EQRKRLT+
Sbjct: 955 YESLLYSAWLRLPPEVDSDTRNMFVEEVMELVELTSLREALVGLPGVNGLSVEQRKRLTV 1014
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF++FDEL
Sbjct: 1015 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1074
Query: 901 FLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 960
L+KRGG+EIYVGP+GRH+CHLI+YFE I G+ IKDGYNPATWMLEVT +QE+ L +D
Sbjct: 1075 LLLKRGGEEIYVGPVGRHACHLIKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVALGVD 1134
Query: 961 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 1020
F+DIYK SELYR+NKALI+ELSRP PGSKDLYFPT Y++SF QC+ACLWKQHWSYWRNP
Sbjct: 1135 FSDIYKNSELYRKNKALIKELSRPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSYWRNP 1194
Query: 1021 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1080
PYTAVR +F T IAL FGT+FW +GTK R QD+FNAMGSMY AV FLG ++VQPVV
Sbjct: 1195 PYTAVRLVFATFIALMFGTIFWKLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAVQPVV 1254
Query: 1081 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1140
A+ER VF RE+ AGMYSA+ YAF QVMIE+PYI + + +YG+IVYAM+GFEW +KFFWY
Sbjct: 1255 AIERTVFYRERAAGMYSALAYAFGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISKFFWY 1314
Query: 1141 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200
LFFM+F+LLYFTFYGMM VA+TPNH+IAAIVS FY +WN+FSGF++PRTRIP+WWRWYY
Sbjct: 1315 LFFMYFTLLYFTFYGMMNVAITPNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWWRWYY 1374
Query: 1201 WANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFG 1260
WA P+AWT+YGLVASQFGD+++++++GETV+ F+RSYF F+HDF+G+VAVV+ VLFG
Sbjct: 1375 WACPIAWTLYGLVASQFGDIKEELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGICVLFG 1434
Query: 1261 VLFAVGIKRFNFQNR 1275
LFA I+ FNFQ R
Sbjct: 1435 FLFAFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2010 bits (5208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 981/1296 (75%), Positives = 1108/1296 (85%), Gaps = 25/1296 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLAL+GKLDS LK +G+VTYNGHGM+EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMK------------- 107
EMTVRETLAFSARCQGVG RYDML EL+RREK A IKPDPDIDV+MK
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVL 299
Query: 108 ----AAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPA 163
A ATEGQ+ NV+TDY LK+LGLEVC DTLVGD+M+RGISGGQ+KRVTTGEM+VGP+
Sbjct: 300 IGLMAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPS 359
Query: 164 LALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223
ALFMDEISTGLDSSTT+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD+Q
Sbjct: 360 KALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQ 419
Query: 224 IVYQGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFS 283
IVYQGPRE VLDFFESMGF+CPERKGVADFLQEVTSRKDQQQYW K+ PY FVT +EF+
Sbjct: 420 IVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFA 479
Query: 284 EAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFV 343
EAFQSF +G+KL EL TPFDK KSHPAAL T+ YGV KKELL A ISRE LLMKRNSFV
Sbjct: 480 EAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFV 539
Query: 344 YIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAK 403
YIFKLTQL MA +SMT+F RT+MHK+S DG IY GA FF V+M MFNGMS+++MTIAK
Sbjct: 540 YIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAK 599
Query: 404 LPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLL 463
LPVFYKQR L FY AWAYALP+WILKIPI+F+EVAVWVF++YYVIGFDPN+GRLFKQ+LL
Sbjct: 600 LPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLL 659
Query: 464 LLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCS 523
L+LVNQMASALFRFIAAAGRNMIVA +FGSF LL+LFA GGFVLSR+++KKWW+WGYW S
Sbjct: 660 LVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSS 719
Query: 524 PMMYAQNAIVANEFFGHSWRKFTS-NSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVL 582
P+MYAQNAIV NEF G SW K +S +S E+LGV VLKSRGFF AYWYW+G GA +GF+L
Sbjct: 720 PLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFIL 779
Query: 583 LFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCS--ESE 640
+FN +T++LT+LN FEKP+AVI++ESE++ + GG +LS+H S +T S E
Sbjct: 780 VFNFCYTVALTYLNAFEKPQAVITEESENS----KTGGKIELSSHRRGSIDQTASTERRE 835
Query: 641 DITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILE 700
+I S + + E A + K+GMVLPF+P S+TF+++ YSVDMP+EMK QG+LE
Sbjct: 836 EIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLE 895
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 760
D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQET
Sbjct: 896 DRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQET 955
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
F RI GYCEQNDIHSP VT++ESLLYSAWLRLP +VDS+T+KMFIEE+MELVEL PL+ S
Sbjct: 956 FARIXGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDS 1015
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR
Sbjct: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYN 940
TVVCTIHQPSIDIFE+FDEL L+KRGGQEIYVGPLGRHS HLI+YFEGI GV IK GYN
Sbjct: 1076 TVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYN 1135
Query: 941 PATWMLEVTAKSQELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQS 1000
PATWMLEVT +QE L +DFT+IYK S+LYRRNK LI+ELS+PAPGSKDLYFPT Y+QS
Sbjct: 1136 PATWMLEVTTSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQS 1195
Query: 1001 FFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGS 1060
FF QC+ACLWKQ SYWRNPPYTAVRF FTT IAL FGTMFWD+GTK K+ QDL NAMGS
Sbjct: 1196 FFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGS 1255
Query: 1061 MYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVY 1120
MY AV FLG Q SSVQPVVAVER VF RE+ AGMYSAMPYAFAQ ++EIPY+F + VY
Sbjct: 1256 MYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVY 1315
Query: 1121 GIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWN 1180
G+IVYAMIGFEW AAKFFWYLFFMFF+LLYFTFYGMM VA TPN HIAAIV+ FYGLWN
Sbjct: 1316 GVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWN 1375
Query: 1181 VFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME-SGETVKQFVRSYFD 1239
+FSGF++PRTRIP+WWRWYYWA PVAWT+YGLV SQFGD++D+ E +G+TV+Q++ YF
Sbjct: 1376 LFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFG 1435
Query: 1240 FKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNFQNR 1275
F+HDFLGVVA V+ F +LF +FA IK FNFQ R
Sbjct: 1436 FEHDFLGVVAAVIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2006 bits (5197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 976/1277 (76%), Positives = 1105/1277 (86%), Gaps = 7/1277 (0%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLAL+GKLDS LK +G+VTYNGHGM+EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG RYDML EL+RREK A IKPDPDIDV+MKAAATEGQ+ NV+T
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVIT 299
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DTLVGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 359
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD+QIVYQGPRE VLDFFESM
Sbjct: 360 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 419
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEVTSRKDQQQYW K+ PY FVT ++F+EAFQSF G+K+ DEL
Sbjct: 420 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELA 479
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAAL T+ YGV KKELL A ISRE LMKRNSFVYI +LTQL MA +SMT
Sbjct: 480 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMT 539
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+MHK+S DG IY+GA FF V+M MFNGMS+++MTIAKLPVFYKQR L FY AWA
Sbjct: 540 IFLRTEMHKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 599
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YAL +WILKIPI+F+EVAVWVF++YYVIGFDPN+GRLFKQ+LLL+LVNQMASALFRFIAA
Sbjct: 600 YALSSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 659
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
AGRNMIVA +FGSF LL+LFA GGFVLSR+++KKWW+WGYW SP+MYAQNAIV NEF G
Sbjct: 660 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 719
Query: 541 SWRKFTS-NSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
SW K +S NS E+LGV VLKSRGFF AYWYW+G GA +GF+L+FN +T++LT+LN FE
Sbjct: 720 SWSKNSSTNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFE 779
Query: 600 KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTV 659
KP+AVI++ESE++ + GG +LS+H S +T S +++I S + + E
Sbjct: 780 KPQAVITEESENS----KTGGKIELSSHRRGSIDQTAS-TDEIGRSISSTSSSVRAEAIA 834
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
A + KRGMVLPF+P S+TFD++ YSVDMP+EMK QG+LED+L LL GVSGAFRPGVLT
Sbjct: 835 EARRNTKRGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLT 894
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
ALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETFTRISGYCEQNDIHSP VT
Sbjct: 895 ALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVT 954
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLT 839
++ESLLYSAWLRLP +VDS+T+KMFIE++MELVEL PL+ SLVGLPG +GLSTEQRKRLT
Sbjct: 955 IHESLLYSAWLRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLT 1014
Query: 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1015 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1074
Query: 900 LFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEI 959
L L+KRGGQEIYVG LGRHS LI+YFEGI GV IK GYNPATWMLEVT +QE L +
Sbjct: 1075 LLLLKRGGQEIYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGV 1134
Query: 960 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 1019
DFT+IYK S LYRRNK LI+ELS+PAPGSKDLYFPT Y+QSFF QC+ACLWKQ SYWRN
Sbjct: 1135 DFTEIYKNSNLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRN 1194
Query: 1020 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPV 1079
PPYTAVRF FTT IAL FGTMFWD+GTK + QDL NAMGSMY AV FLG Q SSVQPV
Sbjct: 1195 PPYTAVRFFFTTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPV 1254
Query: 1080 VAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFW 1139
VAVER VF RE+ AG+YSAMPYAFA ++EIPY+F + VYG+IVYAMIGFEW AAKFFW
Sbjct: 1255 VAVERTVFYRERAAGIYSAMPYAFAHALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFW 1314
Query: 1140 YLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1199
YLFFMFF+LLYFTFYGMM VA TPN HIAAIV+ FYGLWN+FSGF++PRTRIP+WWRWY
Sbjct: 1315 YLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWY 1374
Query: 1200 YWANPVAWTMYGLVASQFGDVEDKME-SGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1258
YWA PVAWT+YGLV SQFGD++D+ E +G+TV+Q++ YF F+HDFLGVVA V+ F VL
Sbjct: 1375 YWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVL 1434
Query: 1259 FGVLFAVGIKRFNFQNR 1275
F +FA IK FNFQ R
Sbjct: 1435 FLFIFAFAIKAFNFQRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054164|ref|XP_002298123.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] gi|222845381|gb|EEE82928.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2001 bits (5185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 959/1276 (75%), Positives = 1091/1276 (85%), Gaps = 37/1276 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LKFSGRVTYNGH MDEFVPQRTAAYISQHD+HIG
Sbjct: 185 MTLLLGPPSSGKTTLLLALAGKLDHALKFSGRVTYNGHEMDEFVPQRTAAYISQHDLHIG 244
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVGSRYDML EL+RREKEAGIKPDPDIDV+MKAAATEGQE +V+
Sbjct: 245 EMTVRETLAFSARCQGVGSRYDMLAELSRREKEAGIKPDPDIDVFMKAAATEGQEDSVVI 304
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LKVLGLEVC DTLVGDEM+RGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 305 DYILKVLGLEVCADTLVGDEMLRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 364
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNSI+Q + IL GTA+ISLLQPAPETYDLFDDIILLSD +IVYQGPRE VL FFE M
Sbjct: 365 YQIVNSIKQYVQILEGTALISLLQPAPETYDLFDDIILLSDGEIVYQGPREHVLRFFEYM 424
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP RKGVADFLQEVTSRKDQ QYW +++PYRFVT +EF+EAF SF G++L +EL
Sbjct: 425 GFKCPARKGVADFLQEVTSRKDQMQYWARRDVPYRFVTVKEFAEAFYSFHEGKRLGNELA 484
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK K+HPAALTTK YGV K+EL KA+ SRE LLMKRNSFVY FK QL+ +A+++MT
Sbjct: 485 VPFDKSKNHPAALTTKKYGVNKRELCKASFSREFLLMKRNSFVYAFKFIQLTIVAVIAMT 544
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+MH+DSV+DGGIYVGA FF V++ MFNGM++ISMT+AKLPVFYKQRDL F+ AW
Sbjct: 545 LFLRTEMHRDSVTDGGIYVGAMFFIVVVIMFNGMAEISMTLAKLPVFYKQRDLLFFPAWI 604
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP WILKIPI+F+EVA+ VF+TY+VIGFDPN+GRLFK +L+LLL NQMAS LFR IAA
Sbjct: 605 YALPTWILKIPITFIEVAIMVFITYFVIGFDPNVGRLFKHYLVLLLTNQMASGLFRTIAA 664
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRNM+VA +FGSFVLL+LF GGFVLSRDDIKKWW+WG+W SPMMYAQNA+V NEF G
Sbjct: 665 VGRNMVVANTFGSFVLLLLFVLGGFVLSRDDIKKWWIWGFWTSPMMYAQNAVVVNEFLGK 724
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW NS E LG++VLKSRGFF AYWYWL + A GF LL+N + L+L FLN K
Sbjct: 725 SWNHVLPNSTEPLGIEVLKSRGFFTEAYWYWLAVAALFGFTLLYNFLYILALAFLNPLGK 784
Query: 601 PR-AVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTV 659
P+ A IS+E +SN++ + IG S SS TC+
Sbjct: 785 PQQAGISEEPQSNNV-DEIGR--------SKSSRFTCN---------------------- 813
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
K+RG+++PFEPHS+TFD+V YSVDMP+EMK G+ EDKL+LL GVSGAFRPGVLT
Sbjct: 814 -----KQRGVIIPFEPHSITFDKVMYSVDMPQEMKSHGVHEDKLVLLKGVSGAFRPGVLT 868
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
ALMG+SGAGKTT+MDVLAGRKTGGYI GNITISGYPKKQETF RISGYCEQNDIHSP +T
Sbjct: 869 ALMGISGAGKTTMMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHIT 928
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLT 839
VYESLLYSAWLRLP EVD ET+KMF+EE+MELVELNPLRQ+LVGLPG GLSTEQRKRLT
Sbjct: 929 VYESLLYSAWLRLPTEVDIETRKMFVEEVMELVELNPLRQALVGLPGVDGLSTEQRKRLT 988
Query: 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 989 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048
Query: 900 LFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEI 959
LFL+KRGGQEIYVGPLGR SCHLI+YFEGI GV IKDGYNPATWMLEVT+ ++EL L +
Sbjct: 1049 LFLLKRGGQEIYVGPLGRLSCHLIKYFEGIEGVNKIKDGYNPATWMLEVTSTAEELALGV 1108
Query: 960 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 1019
DF +IY+ SEL+RRN+ALI++LS PAPGSKDLYF T Y++SFF QC+ACLWKQHWSYWRN
Sbjct: 1109 DFAEIYRSSELFRRNRALIKDLSTPAPGSKDLYFSTQYSRSFFTQCLACLWKQHWSYWRN 1168
Query: 1020 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPV 1079
PPYTA+RFL TTVI L FGTMFWD+G+K+ + QDLFNAMGSMYTAV FLG Q +SVQPV
Sbjct: 1169 PPYTAIRFLSTTVIGLIFGTMFWDIGSKITKRQDLFNAMGSMYTAVLFLGVQNAASVQPV 1228
Query: 1080 VAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFW 1139
VAVER VF RE+ AGMYSA+PYAFAQV+IE+PYIFV ++VYG+IVY+MIGF W +KFFW
Sbjct: 1229 VAVERTVFYRERAAGMYSALPYAFAQVLIELPYIFVQAAVYGVIVYSMIGFGWTISKFFW 1288
Query: 1140 YLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1199
YL+FM+F+LLYFTFYGMM VA++PNH IA+++S FYG+WNVFSGFVIPR+R+PLWWRWY
Sbjct: 1289 YLYFMYFTLLYFTFYGMMAVAVSPNHQIASVISAAFYGIWNVFSGFVIPRSRMPLWWRWY 1348
Query: 1200 YWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLF 1259
W PV WT+YGLVASQFGD++D++E+GETV+QFV Y DFKHDFLGVVA V+ F VLF
Sbjct: 1349 SWICPVFWTLYGLVASQFGDMKDRLETGETVEQFVTIYLDFKHDFLGVVAAVILGFTVLF 1408
Query: 1260 GVLFAVGIKRFNFQNR 1275
+ FA+ IK FNFQ R
Sbjct: 1409 AITFAISIKLFNFQRR 1424
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1998 bits (5176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 940/1277 (73%), Positives = 1078/1277 (84%), Gaps = 31/1277 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLAL+GKLD LK SGRVTYNGH ++EFVPQRTAAYISQHD+HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVGSRYDML+EL+RREK A IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV+S+R +HILNGTAVISLLQPAPETYDLFDDIIL+SD Q+VY GPRE VLDFFESM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEVTS+KDQ QYWV ++ PYRFVT +F+EAFQSF +G KL +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFD+ KSHPAALTTK YG+ KKELLKAN SRE LLMKRNSFVY+FKL+QL MALV+MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+MH +++ D G+Y GA FF ++ MFNG+++ISMTIAKLPVFYKQR+L FY +WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YA+P+WILKIP++ +EVAVWVFLTYYVIGFDPN+GR FKQ+L+LL+V+QMAS LFR IAA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRNMIVA +FG+F ++ + A GGF+LS+ DIK WW+WGYW SP+MY QNA++ NEF +
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW T N LGV+ L+SR FF +YWYWLGLGA +GFV LFN+ F L+L FL F+K
Sbjct: 720 SWHNATHN----LGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+A I+++ SN+ G A + G SS + S V
Sbjct: 776 PQATITEDESSNE-----GTLADIELPGIESSGRGDS--------------------LVE 810
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
+ KK+GMVLPFEPHS+TFDEV YSVDMP+EMK QG+ ED+L+LL GVSGAFRPGVLTA
Sbjct: 811 SSHGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTA 870
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETF RISGYCEQNDIHSP VTV
Sbjct: 871 LMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTV 930
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESLLYSAWLRLP VDS+T+KMFIEE+MELVELNP+R SLVGLPG SGLSTEQRKRLTI
Sbjct: 931 YESLLYSAWLRLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTI 990
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL
Sbjct: 991 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1050
Query: 901 FLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 960
FLMKRGGQEIYVGPLGRHS HLI+YFE I GV IKDGYNPATWMLEVTA +QEL+L +D
Sbjct: 1051 FLMKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVD 1110
Query: 961 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 1020
FTD+YK S+LYRRNK LI+EL +PAPGSKDL+FPT Y+QSF +QC ACLWKQ WSYWRNP
Sbjct: 1111 FTDLYKNSDLYRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNP 1170
Query: 1021 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1080
PYTAVRF FTT IAL FGT+FWD+G K DL NA+GSMYTAV FLG Q SSVQPVV
Sbjct: 1171 PYTAVRFFFTTFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVV 1230
Query: 1081 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1140
A+ER VF REK AGMYSA+PYAFAQ+++E+PY+FV + YG+IVYAMIGFEW A KFFWY
Sbjct: 1231 AIERTVFYREKAAGMYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWY 1290
Query: 1141 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200
LFFM+F+LLY+TFYGMMTV +TPNHHIA+IV+ FY +WN+FSGFV+ R IP+WWRWYY
Sbjct: 1291 LFFMYFTLLYYTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYY 1350
Query: 1201 WANPVAWTMYGLVASQFGDVEDKM--ESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1258
WA PVAWT+YGLVASQFGD+ + M E + VK F+ Y+ KHDF+GV AVVVA AVL
Sbjct: 1351 WACPVAWTIYGLVASQFGDLTEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVL 1410
Query: 1259 FGVLFAVGIKRFNFQNR 1275
F ++FAV IK FNFQ R
Sbjct: 1411 FALIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256538311|gb|ACU82515.1| pleiotropic drug resistance protein [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1998 bits (5175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 934/1277 (73%), Positives = 1084/1277 (84%), Gaps = 6/1277 (0%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLL LAGKL LKFSGRVTYNGHGM+EFVPQRT+AYISQ D+HIG
Sbjct: 179 MTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHIG 238
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FSARCQGVG RYDMLTEL+RREK A IKPDPD+D+ MKAAA GQE NV+T
Sbjct: 239 EMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVT 298
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGDEM RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 299 DYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 358
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETY+LFDDIIL+SD Q+VYQGPRE VL+FF+ M
Sbjct: 359 YQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHM 418
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF CP+RKGVADFLQEVTSRKDQ+QYW ++ YRFV+ +EFSEAFQSF VG+KL DEL
Sbjct: 419 GFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELA 478
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTT+ YG KKELLKA ISRELLLMKRNSFVYIFKL QL MA V+MT
Sbjct: 479 TPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMT 538
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+MH+ +V DG +Y+GA FFA+++TMFNG S++++TI KLPVFYKQRD F+ WA
Sbjct: 539 LFFRTEMHRRTVDDGSVYMGALFFAIIITMFNGFSELALTILKLPVFYKQRDFLFFPPWA 598
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y++P WILKIPI+F+EV +WV +TYYV+GFDPN GR FK FL+LL VNQMASALFR I A
Sbjct: 599 YSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGA 658
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRN+IVA +FGSF LL + GGFVL+RDD+ WW+WGYW SPMMYAQN I NEF GH
Sbjct: 659 LGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGH 718
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
WR NSNE+LGV +LKSRG FP A WYW+G+GATIG++LLFN FT++L +L+ FEK
Sbjct: 719 KWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEK 778
Query: 601 PRAVISDESESNDLGNRIGGTAQL--STHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
P+A++S E+ ++ + +L S+ G +SS +T ++ ++ + S +++ S E
Sbjct: 779 PQAIVSKETSTDKSVKKSQDVQELELSSKGKSSSERTENQI-SLSSRTSSARVGSFSE-- 835
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
A Q KKRGMVLPFEPHS+TFDE+ Y+VDMP+EMK QG+ ED+L LL GVSG+FRPGVL
Sbjct: 836 -EANQNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVL 894
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETF RI+GYCEQ DIHSP V
Sbjct: 895 TALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHV 954
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TVYESL+YSAWLRLPP+VDS T+KMF+EE+MEL+ELNPLR ++VGLPG SGLSTEQRKRL
Sbjct: 955 TVYESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRL 1014
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF++FD
Sbjct: 1015 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1074
Query: 899 ELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLE 958
ELFL++RGG+EIYVGP+GRHS LI YFE I GV IKDGYNPATWMLE+T +QE TL
Sbjct: 1075 ELFLLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLG 1134
Query: 959 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 1018
++F +YK SELYRRNKALI+ELS P S +LYFPT Y+QSFF+QC+ACLWKQH SYWR
Sbjct: 1135 VNFNTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWR 1194
Query: 1019 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1078
NPPY+AVRFLFTT IAL FGT+FWD+G+K QDLFNAMGSMY AV F+G Q +SVQP
Sbjct: 1195 NPPYSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQP 1254
Query: 1079 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1138
VVA+ER VF RE+ AGMYSA+PYAF QV+IE+PYIF+ + VYG+IVY MIGFEW AAKFF
Sbjct: 1255 VVAIERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFF 1314
Query: 1139 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1198
WY+FFM+F+LLYFTFYGMMTVA+TPNH+IAAIVS FYG WN+FSGF++PRTRIP+WWRW
Sbjct: 1315 WYIFFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRW 1374
Query: 1199 YYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1258
YYW PVAWT+YGLV SQFGD+ D M+S +TV +FV +YF +K+DFLGVVA V VL
Sbjct: 1375 YYWICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVL 1434
Query: 1259 FGVLFAVGIKRFNFQNR 1275
FG +FA IK FNFQ R
Sbjct: 1435 FGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1997 bits (5174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 942/1276 (73%), Positives = 1093/1276 (85%), Gaps = 32/1276 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
M LLLGPP SGKTTLLLAL+GKLD LK SGRV YNGH M+EFVPQRTAAYISQHDVHIG
Sbjct: 182 MALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG+RYD+L+ELARREKEA IKPDPDIDVYMKAAAT GQEA+++T
Sbjct: 242 EMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASLVT 301
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT++GDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 302 DYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 361
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV S+RQ +HILNGTAVISLLQPAPETY+LFDDI+L+SD QIVYQGPRE VL+FFE +
Sbjct: 362 FQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFEYV 421
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEVTSRKDQ+QYW+H++ YRFVT EF+EAFQSF VG+++ +EL
Sbjct: 422 GFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEELA 481
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTTK YGV KKELLKAN SRE LLMKRNSFVYIFKL QL+ +A+++MT
Sbjct: 482 TPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILTMT 541
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+MH++S++DGG+Y GA FFAV++ MFNG+++ISMTI KLP+FYKQRDL FY +WA
Sbjct: 542 MFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPSWA 601
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YA+P+WILKIPI+F+E AVWVFLTYYVIGFDPN+GRL KQ+L+LLL+NQM+S LFR IAA
Sbjct: 602 YAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAIAA 661
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRNMIVA +FGSF LLVLFA GGFVLSR+DIK WW+WGYW SP+MY QNAIV NEF G
Sbjct: 662 LGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFLGD 721
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW FT NSN+TLG+Q+L+SRGFF HAYWYW+G+GA IGF++LFNI +TL+LT+LN ++
Sbjct: 722 SWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPYDT 781
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+ I++ESES + N I +A + +SSHK
Sbjct: 782 PQTTITEESESG-MTNGIAESAGRAIAVMSSSHK-------------------------- 814
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
KKRGM+LPFEP+S+TFD++ YSVDMP EMK QG+ ED+L+LL GVSGAFRPGVLTA
Sbjct: 815 ----KKRGMILPFEPYSITFDQIVYSVDMPLEMKDQGVREDRLVLLKGVSGAFRPGVLTA 870
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI GNI +SGYPK+QETF RISGYCEQNDIHSP VTV
Sbjct: 871 LMGVSGAGKTTLMDVLAGRKTGGYIEGNIKVSGYPKRQETFARISGYCEQNDIHSPHVTV 930
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESL+YSAWLRLP EV++ T+KMFIEE+MELVELNPLR SLVGLPG +GLSTEQRKRLTI
Sbjct: 931 YESLVYSAWLRLPAEVEAYTRKMFIEEVMELVELNPLRNSLVGLPGVNGLSTEQRKRLTI 990
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL
Sbjct: 991 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1050
Query: 901 FLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 960
FLMKRGGQEIYVGPLGRHS +I+YFE I GV IKDGYNPATWMLEVT +QEL L +D
Sbjct: 1051 FLMKRGGQEIYVGPLGRHSSQMIKYFESIEGVGKIKDGYNPATWMLEVTTPAQELNLGVD 1110
Query: 961 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 1020
F +IY+ S L RRNK LI EL PAPGSKDL+FPT Y QS +QC+ACLWKQHWSYWRNP
Sbjct: 1111 FHEIYRNSGLCRRNKRLISELGNPAPGSKDLHFPTQYPQSLLVQCLACLWKQHWSYWRNP 1170
Query: 1021 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1080
PYTAVRFL TTV A+ FGTMFWD+G K QDLFNAMGSMY AV F+G Q +SVQPVV
Sbjct: 1171 PYTAVRFLSTTVTAVLFGTMFWDLGGKYSSRQDLFNAMGSMYNAVLFVGVQNSASVQPVV 1230
Query: 1081 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1140
A+ER VF RE+ AGMYSA+PYA AQV+IE+PY+FV ++ Y +IVYAM+GFEW KFFWY
Sbjct: 1231 AIERTVFYRERAAGMYSALPYALAQVIIELPYVFVQATSYSVIVYAMMGFEWTLQKFFWY 1290
Query: 1141 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200
+FFM+F+L YFTFYGMMTVA+TPNHH+A++V+ FYG+WN+FSGFVI R IP+WWRWYY
Sbjct: 1291 VFFMYFTLCYFTFYGMMTVAVTPNHHVASVVASAFYGIWNLFSGFVIARPSIPVWWRWYY 1350
Query: 1201 WANPVAWTMYGLVASQFGDVEDKMESGE-TVKQFVRSYFDFKHDFLGVVAVVVAAFAVLF 1259
WA PVAWT+YGLVASQFGD+ + M+S +V++F+RS+ KHDF+GV A++V+ FAVLF
Sbjct: 1351 WACPVAWTIYGLVASQFGDITNVMKSENMSVQEFIRSHLGIKHDFVGVSAIMVSGFAVLF 1410
Query: 1260 GVLFAVGIKRFNFQNR 1275
++FAV IK FNFQ R
Sbjct: 1411 VIIFAVSIKAFNFQRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1275 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.990 | 0.859 | 0.540 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.491 | 0.440 | 0.713 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.506 | 0.444 | 0.598 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.479 | 0.430 | 0.618 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.486 | 0.426 | 0.608 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.478 | 0.430 | 0.603 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.487 | 0.431 | 0.584 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.479 | 0.428 | 0.570 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.476 | 0.418 | 0.526 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.476 | 0.429 | 0.521 | 0.0 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3626 (1281.5 bits), Expect = 0., P = 0.
Identities = 694/1283 (54%), Positives = 896/1283 (69%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SG +TYNG+ +DEFVP++T+AYISQ+D+H+G
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV+ETL FSARCQGVG+RYD+L ELARREK+AGI P+ D+D++MKA+A +G + +++T
Sbjct: 259 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVT 318
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+M+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 319 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 378
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV ++Q +H+ T ++SLLQPAPET+DLFDDIIL+S+ QIVYQGPR+ +L+FFES
Sbjct: 379 FQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESF 438
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKG ADFLQEVTS+KDQ+QYWV+ PY ++ EF+ ++SF VG K+++EL
Sbjct: 439 GFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELA 498
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK + H AAL Y V K+ELLK+ +E LLM+RN+F Y+FK Q+ +A ++ T
Sbjct: 499 VPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITST 558
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+M+ + D +Y+GA F +++ MFNG ++++M +++LPVFYKQRDL FY +W
Sbjct: 559 LFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWT 618
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
++LP ++L IP S LE W+ +TYY IGF P+ R FKQF + QMA++LFR IA+
Sbjct: 619 FSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIAS 678
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
R M++A + I WW W YW SP+ YA N +V NE F
Sbjct: 679 VCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAP 738
Query: 541 SWRKFTSNSNET--LGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
W ++SN T LG VL + + WYW+ +GA + F LFNI FTL+LT+LN
Sbjct: 739 RWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPL 798
Query: 599 EKPRAVI-SDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREV 657
K ++ +E+E D G + LST N + +DS + E
Sbjct: 799 GKKAGLLPEEENEDADQG-KDPMRRSLSTADGNRRGEVAMGRMS---RDSAA------EA 848
Query: 658 TVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGV 717
+ GA K+GMVLPF P +++FD+V Y VDMP EM+ QG+ E +L LL GV+GAFRPGV
Sbjct: 849 SGGA--GNKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGV 906
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
LTALMGVSGAGKTTLMDVLAGRKTGGYI G++ ISG+PK QETF RISGYCEQ DIHSP
Sbjct: 907 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQ 966
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837
VTV ESL++SA+LRLP EV + + MF++++MELVEL+ LR S+VGLPG +GLSTEQRKR
Sbjct: 967 VTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKR 1026
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 897
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFE+F
Sbjct: 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAF 1086
Query: 898 DELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTL 957
DEL LMKRGGQ IY GPLG++S ++ YFE PGV I + YNPATWMLE ++ + EL L
Sbjct: 1087 DELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKL 1146
Query: 958 EIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYW 1017
+DF ++Y S L++RNKAL++ELS P G+ DLYF T ++Q+ + Q +CLWKQ W+YW
Sbjct: 1147 SVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYW 1206
Query: 1018 RNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQ 1077
R+P Y VRF+FT +L GT+FW +G DL +G++Y A+ F+G CS+VQ
Sbjct: 1207 RSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQ 1266
Query: 1078 PVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKX 1137
P+VAVER VF RE+ AGMYSAMPYA +QV E+PY+ + + Y +IVYAM+GFEW A K
Sbjct: 1267 PMVAVERTVFYRERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKF 1326
Query: 1138 XXXXXXXXXXXXXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWR 1197
GMMTV++TPN +A+I + FYG++N+FSGF IPR +IP WW
Sbjct: 1327 FWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWI 1386
Query: 1198 WYYWANPVAWTMYGLVASQFGDVEDKME--SGE---TVKQFVRSYFDFKHDXXXXXXXXX 1252
WYYW PVAWT+YGL+ SQ+GDVE +++ G TVKQ++ ++ F+ D
Sbjct: 1387 WYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVL 1446
Query: 1253 XXXXXXXXXXXXXXIKRFNFQNR 1275
I+ NFQ R
Sbjct: 1447 IAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2351 (832.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 449/629 (71%), Positives = 499/629 (79%)
Query: 649 SQLLSQR-EVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLN 707
++L S R E V A KKRGMVLPFEPHS+TFD V YSVDMP+EM QG ED+L+LL
Sbjct: 795 TELQSARSEGVVEAGANKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLK 854
Query: 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGY 767
GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPK Q+TF RISGY
Sbjct: 855 GVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGY 914
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
CEQ DIHSP VTVYESL+YSAWLRLP EVD +K+FIEE+MELVEL PLRQ+LVGLPGE
Sbjct: 915 CEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGE 974
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH
Sbjct: 975 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1034
Query: 888 QPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLE 947
QPSIDIFE+FDELFL+KRGG+EIYVGPLG S HLI YFE I G+ I +GYNPATWMLE
Sbjct: 1035 QPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLE 1094
Query: 948 VTAKSQELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVA 1007
V+ SQE L +DF +YK SELY+RNK LI+ELS+PAPGSKDLYFPT Y+QSF QC+A
Sbjct: 1095 VSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMA 1154
Query: 1008 CLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFF 1067
LWKQHWSYWRNPPYTAVRFLFT IAL FGTMFWD+G K K QDL NAMGSMYTAV F
Sbjct: 1155 SLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLF 1214
Query: 1068 LGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAM 1127
LG Q +SVQPVV VER VF RE+ AGMYSAMPYAFAQV IEIPY+ V + VYG+IVYAM
Sbjct: 1215 LGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAM 1274
Query: 1128 IGFEWIAAKXXXXXXXXXXXXXXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVI 1187
IGFEW A K GMM VAMTPNHHIA++VS FYG+WN+FSGF+I
Sbjct: 1275 IGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLI 1334
Query: 1188 PRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKM-ESGETVKQFVRSYFDFKHDXXX 1246
PR +P+WW WYYW PVAWT+YGL+ASQFGD+ + M +S +VKQF+R ++ ++
Sbjct: 1335 PRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLG 1394
Query: 1247 XXXXXXXXXXXXXXXXXXXXIKRFNFQNR 1275
IK FNFQ R
Sbjct: 1395 VVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2011 (713.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 389/650 (59%), Positives = 459/650 (70%)
Query: 630 NSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDM 689
NS E +D ++ S E+ + + KRGMVLPF+P SL F+ V Y VDM
Sbjct: 805 NSKATVVEEGKDKQKGENRGTEGSVVELNSSSNKGPKRGMVLPFQPLSLAFNNVNYYVDM 864
Query: 690 PKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 749
P EMK QG+ D+L LL V GAFRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYI G+I
Sbjct: 865 PSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSI 924
Query: 750 TISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
+ISGYPK Q TF R+SGYCEQNDIHSP VTVYESL+YSAWLRL ++D +T+++F+EE+M
Sbjct: 925 SISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVM 984
Query: 810 ELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
ELVEL PLR S+VGLPG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM
Sbjct: 985 ELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1044
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGI 929
RTVRNTVDTGRTVVCTIHQPSIDIFESFDEL LMKRGGQ IY G LG HS L+ YFE +
Sbjct: 1045 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAV 1104
Query: 930 PGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGSK 989
GV I DGYNPATWML+VT S E + +DF I+ S LYRRN+ LI++LS P PGSK
Sbjct: 1105 EGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSK 1164
Query: 990 DLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMK 1049
D+YF T Y QSF Q AC WKQ+WSYWR+P Y A+RFL T VI + FG +FW +GTK +
Sbjct: 1165 DVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTE 1224
Query: 1050 RNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIE 1109
QDL N G+MY AV FLGA ++VQP +A+ER VF REK AGMYSA+PYA +QV +E
Sbjct: 1225 NEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVE 1284
Query: 1110 IPYIFVLSSVYGIIVYAMIGFEWIAAKXXXXXXXXXXXXXXXXXXGMMTVAMTPNHHIAA 1169
I Y + + VY +I+Y+MIG W AK GMM +A+TPN+ IA
Sbjct: 1285 IMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAG 1344
Query: 1170 IVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME-SGE 1228
I F LWN+FSGF+IPR +IP+WWRWYYWA PVAWT+YGL+ SQ GD + + SG
Sbjct: 1345 ICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGI 1404
Query: 1229 ---TVKQFVRSYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKRFNFQNR 1275
+K ++ F F+HD IK NFQ R
Sbjct: 1405 GDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1992 (706.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 381/616 (61%), Positives = 455/616 (73%)
Query: 665 KKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGV 724
K RGMVLPF+P SL+F + Y VD+P +K QGILED+L LL ++GAFRPGVLTAL+GV
Sbjct: 805 KNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGV 864
Query: 725 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESL 784
SGAGKTTLMDVLAGRKTGG I G++ ISG+PK+QETF RISGYCEQND+HSP +TV ESL
Sbjct: 865 SGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESL 924
Query: 785 LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVEL 844
L+SA LRLP ++DSETQ+ F+ E+MELVEL L +LVGLPG GLSTEQRKRLTIAVEL
Sbjct: 925 LFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVEL 984
Query: 845 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904
VANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFESFDEL MK
Sbjct: 985 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1044
Query: 905 RGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDI 964
RGG+ IY GPLG+ SC LI+YFE I GV+ IK G+NPA WML+VTA ++E L +DF +I
Sbjct: 1045 RGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEI 1104
Query: 965 YKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTA 1024
Y+ S L +RNK LIE LS+P+ +K++ FPT Y+QS + Q VACLWKQ+ SYWRNP YTA
Sbjct: 1105 YRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTA 1164
Query: 1025 VRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVER 1084
VRF +T VI+L GT+ W G+K Q LFNAMGSMY AV F+G ++ QPVV++ER
Sbjct: 1165 VRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIER 1224
Query: 1085 AVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKXXXXXXXX 1144
V RE+ AGMYSA+P+AFAQV IE PY+ S++Y I YAM FEW A K
Sbjct: 1225 FVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFM 1284
Query: 1145 XXXXXXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANP 1204
GMMT A+TPNH++A+I++ FY LWN+FSGF+IP RIPLWWRWYYWANP
Sbjct: 1285 YFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANP 1344
Query: 1205 VAWTMYGLVASQFGDVED--KMESG---ETVKQFVRSYFDFKHDXXXXXXXXXXXXXXXX 1259
VAWT+YGL+ SQ+GD E K+ G VKQ + +KHD
Sbjct: 1345 VAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFF 1404
Query: 1260 XXXXXXXIKRFNFQNR 1275
IK FNFQ R
Sbjct: 1405 SLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1981 (702.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 380/624 (60%), Positives = 449/624 (71%)
Query: 656 EVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRP 715
E+T + K+GMVLPF+P SL F+ V Y VDMP EMK QG+ D+L LL V GAFRP
Sbjct: 830 ELTSTSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRP 889
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHS 775
GVLTAL+GVSGAGKTTLMDVLAGRKTGGY+ G+I ISGYPK Q TF R+SGYCEQNDIHS
Sbjct: 890 GVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHS 949
Query: 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835
P VTVYESL+YSAWLRL ++D++T++MF+EE+MELVEL PLR S+VGLPG GLSTEQR
Sbjct: 950 PHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQR 1009
Query: 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 895
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE
Sbjct: 1010 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1069
Query: 896 SFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQEL 955
SFDEL LMKRGGQ IY G LG HS L+ YFE I GV IKDGYNPATWML+VT S E
Sbjct: 1070 SFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMES 1129
Query: 956 TLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWS 1015
+ +DF I+ S + RRN+ LI+ELS P PGS DLYF T Y Q F Q AC WK +WS
Sbjct: 1130 QMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWS 1189
Query: 1016 YWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSS 1075
WR P Y A+RFL T VI + FG +FW GTK+++ QDL N G+MY AV FLGA ++
Sbjct: 1190 NWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAAT 1249
Query: 1076 VQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAA 1135
VQP VA+ER VF REK AGMYSA+PYA +QV +EI Y + + VY +I+Y+MIG++W
Sbjct: 1250 VQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVV 1309
Query: 1136 KXXXXXXXXXXXXXXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLW 1195
K GMM VA+TPN+ IA I F WN+FSGF+IPR +IP+W
Sbjct: 1310 KFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIW 1369
Query: 1196 WRWYYWANPVAWTMYGLVASQFGDVEDKMES---GE-TVKQFVRSYFDFKHDXXXXXXXX 1251
WRWYYWA+PVAWT+YG++ SQ GD + + G+ ++K +++ F F +D
Sbjct: 1370 WRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVV 1429
Query: 1252 XXXXXXXXXXXXXXXIKRFNFQNR 1275
IK NFQ R
Sbjct: 1430 HIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 371/615 (60%), Positives = 449/615 (73%)
Query: 666 KRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVS 725
KRGMVLPF P +++FD V Y VDMPKEMK QG+ +DKL LL V+G FRPGVLTALMGVS
Sbjct: 802 KRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVS 861
Query: 726 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLL 785
GAGKTTLMDVLAGRKTGGYI G+I ISG+PK+QETF RISGYCEQNDIHSP VTV ESL+
Sbjct: 862 GAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLI 921
Query: 786 YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELV 845
YSA+LRLP EV + F++E+MELVEL L+ ++VGLPG +GLSTEQRKRLTIAVELV
Sbjct: 922 YSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELV 981
Query: 846 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL L+KR
Sbjct: 982 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1041
Query: 906 GGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIY 965
GGQ IY GPLG++S +I YF+ I GV IK+ YNPATWMLEV++ + E LEIDF + Y
Sbjct: 1042 GGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHY 1101
Query: 966 KGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAV 1025
K S LY++NK L++ELS P G+ DLYF T ++QS Q +CLWKQ +YWR P Y
Sbjct: 1102 KTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLA 1161
Query: 1026 RFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERA 1085
RF FT A+ G++FW +GTK + DL +G+MY AV F+G SSVQP++AVER+
Sbjct: 1162 RFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERS 1221
Query: 1086 VFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKXXXXXXXXX 1145
VF RE+ A MYSA+PYA AQV+ EIPY+ + ++ Y +I+YAM+ FEW AK
Sbjct: 1222 VFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSF 1281
Query: 1146 XXXXXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPV 1205
GMMTVA+TPN +AA+ + FYGL+N+FSGFVIPR RIP WW WYYW PV
Sbjct: 1282 MSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPV 1341
Query: 1206 AWTMYGLVASQFGDVEDK-----MESGETVKQFVRSYFDFKHDXXXXXXXXXXXXXXXXX 1260
AWT+YGL+ SQ+GDVED M + T+K ++ +++ + D
Sbjct: 1342 AWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFA 1401
Query: 1261 XXXXXXIKRFNFQNR 1275
I+ NFQ R
Sbjct: 1402 FMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1926 (683.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 367/628 (58%), Positives = 458/628 (72%)
Query: 653 SQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGA 712
S +E + ++ KK GMVLPF P +++FD+V Y VDMP EM+ QG+ E +L LL GV+ A
Sbjct: 816 SNKETEMESVSAKK-GMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLKGVTSA 874
Query: 713 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQND 772
FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G++ +SG+PKKQETF RISGYCEQ D
Sbjct: 875 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGYCEQTD 934
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
IHSP VTV ESL++SA+LRL EV E + MF++++MELVEL LR ++VGLPG +GLST
Sbjct: 935 IHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGVTGLST 994
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 892
EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSID
Sbjct: 995 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSID 1054
Query: 893 IFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKS 952
IFE+FDEL LMKRGG IY GPLGR+S ++ YFE PGV I + YNPATWMLE ++ +
Sbjct: 1055 IFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEASSLA 1114
Query: 953 QELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQ 1012
EL L +DF ++YK S L +RNKAL++ELS P G+ DLYF T ++Q+ + Q +CLWKQ
Sbjct: 1115 AELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCLWKQ 1174
Query: 1013 HWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQY 1072
W+YWR+P Y VRF+FT +L G++FW +G K QDL +G++Y AV F+G
Sbjct: 1175 WWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVFVGINN 1234
Query: 1073 CSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEW 1132
CS+VQP+VAVER VF REK AGMYSA+PYA +QV E+PY+ + ++ Y +I+Y+M+GFEW
Sbjct: 1235 CSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYSMVGFEW 1294
Query: 1133 IAAKXXXXXXXXXXXXXXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRI 1192
A+K GMMTV++TPN +A+I + FYG++N+FSGF IPR +I
Sbjct: 1295 KASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKI 1354
Query: 1193 PLWWRWYYWANPVAWTMYGLVASQFGDVEDKME-----SGETVKQFVRSYFDFKHDXXXX 1247
P WW WYYW PVAWT+YGL+ SQ+GDVE + G TVKQ+++ + F+ D
Sbjct: 1355 PKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGP 1414
Query: 1248 XXXXXXXXXXXXXXXXXXXIKRFNFQNR 1275
IK NFQ+R
Sbjct: 1415 VAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1812 (642.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 350/614 (57%), Positives = 434/614 (70%)
Query: 665 KKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGV 724
+K+GM+LPF+P ++TF V Y VDMPKEM+ QG+ E +L LL+ VSG F PGVLTAL+G
Sbjct: 813 EKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGS 872
Query: 725 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESL 784
SGAGKTTLMDVLAGRKTGGY G+I ISG+PK+Q+TF RISGY EQNDIHSP VTV ESL
Sbjct: 873 SGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESL 932
Query: 785 LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVEL 844
+SA LRLP E+ E +K F+E++M LVEL+ LR +LVGLPG +GLSTEQRKRLTIAVEL
Sbjct: 933 WFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVEL 992
Query: 845 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMK
Sbjct: 993 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1052
Query: 905 RGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDI 964
RGGQ IY G LG HS L+ YF+GI GV I GYNPATWMLEVT + E ++F D+
Sbjct: 1053 RGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADL 1112
Query: 965 YKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTA 1024
YK S+ +R +A I++LS P GS+ + F + Y+Q+ Q + CLWKQ+ YWR+P Y
Sbjct: 1113 YKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNL 1172
Query: 1025 VRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVER 1084
VR +FTT+ A GT+FWD+G+K +QDL MG++Y+A FLG SSVQP+V++ER
Sbjct: 1173 VRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIER 1232
Query: 1085 AVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKXXXXXXXX 1144
VF REK AGMY+ +PYA AQ ++EIPYI + +YG+I Y IGFE +K
Sbjct: 1233 TVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFM 1292
Query: 1145 XXXXXXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANP 1204
GMM V +TPN H+AA++S FY LWN+ SGF++ + IP+WW W+Y+ P
Sbjct: 1293 FLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICP 1352
Query: 1205 VAWTMYGLVASQFGDVEDKMESG---ETVKQFVRSYFDFKHDXXXXXXXXXXXXXXXXXX 1261
VAWT+ G++ SQ GDVE + TVK+F+ YF +K +
Sbjct: 1353 VAWTLQGVILSQLGDVESMINEPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFS 1412
Query: 1262 XXXXXIKRFNFQNR 1275
+K NFQ R
Sbjct: 1413 AFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1703 (604.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 321/610 (52%), Positives = 423/610 (69%)
Query: 669 MVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAG 728
MVLPF+P ++TF ++ Y VDMP EM+ QG + KL LL+ ++GAFRPG+LTALMGVSGAG
Sbjct: 841 MVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAG 900
Query: 729 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSA 788
KTTL+DVLAGRKT GYI G+I ISG+PK QETF R+SGYCEQ DIHSP +TV ES++YSA
Sbjct: 901 KTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSA 960
Query: 789 WLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP 848
WLRL PE+D+ T+ F+++++E +EL+ ++ SLVG+ G SGLSTEQRKRLTIAVELVANP
Sbjct: 961 WLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANP 1020
Query: 849 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908
SIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQPSIDIFE+FDEL L+KRGG+
Sbjct: 1021 SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGR 1080
Query: 909 EIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIYKGS 968
IY GPLG+HS H+I YFE +P + IKD +NPATWML+V+++S E+ L +DF IY S
Sbjct: 1081 MIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDS 1140
Query: 969 ELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFL 1028
LY+RN L+++LS+P GS D+ F + QS++ Q + LWK + SYWR+P Y +R +
Sbjct: 1141 ALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMM 1200
Query: 1029 FTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFC 1088
T V +L FG +FW G + Q +F G++Y V FLG C+S ER V
Sbjct: 1201 HTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMY 1260
Query: 1089 REKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKXXXXXXXXXXXX 1148
RE+ AGMYSA YA QV+ EIPYIF+ ++ + I+ Y MIGF A K
Sbjct: 1261 RERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSL 1320
Query: 1149 XXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWT 1208
M V++TPN +AAI+ LFY +N+FSGF+IP+T++P WW W Y+ P +WT
Sbjct: 1321 LTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWT 1380
Query: 1209 MYGLVASQFGDVEDKMES-GE--TVKQFVRSYFDFKHDXXXXXXXXXXXXXXXXXXXXXX 1265
+ G ++SQ+GD+ +++ G+ TV +F++ YF F HD
Sbjct: 1381 LNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAF 1440
Query: 1266 XIKRFNFQNR 1275
+ + NFQ R
Sbjct: 1441 FVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1680 (596.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 318/610 (52%), Positives = 420/610 (68%)
Query: 669 MVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAG 728
M+LPF+P ++TF ++ Y VD+P EMK QG E KL LL+ ++GAFRPGVLTALMG+SGAG
Sbjct: 804 MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAG 863
Query: 729 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSA 788
KTTL+DVLAGRKT GYI G I ISG+ K QETF R+SGYCEQ DIHSP +TV ESL+YSA
Sbjct: 864 KTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSA 923
Query: 789 WLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP 848
WLRL PE++ +T+ F+++++E +EL ++ +LVG+ G SGLSTEQRKRLT+AVELVANP
Sbjct: 924 WLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANP 983
Query: 849 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908
SIIFMDEPT+GLDARAAAIVMR V+N +TGRT+VCTIHQPSI IFE+FDEL L+KRGG+
Sbjct: 984 SIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGR 1043
Query: 909 EIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIYKGS 968
IY GPLG+HS +I YF+ IPGV I+D YNPATWMLEVT++S E L++DF IY S
Sbjct: 1044 MIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNES 1103
Query: 969 ELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFL 1028
+LY+ N L++ELS+P GS DL+F + Q+++ Q +CLWK SYWR+P Y +R
Sbjct: 1104 DLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIG 1163
Query: 1029 FTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFC 1088
T + + FG +FW+ G K+ Q+LF +G++Y V F+G C+S ER V
Sbjct: 1164 HTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMY 1223
Query: 1089 REKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKXXXXXXXXXXXX 1148
RE+ AGMYSA YA AQV+ EIPYIF+ S+ + I++Y MIGF +K
Sbjct: 1224 RERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNL 1283
Query: 1149 XXXXXXGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWT 1208
M +++TPN +AAI+ LF+ +N+F+GF+IP+ +IP WW W+Y+ P +WT
Sbjct: 1284 LCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWT 1343
Query: 1209 MYGLVASQFGDVEDKMES-GET--VKQFVRSYFDFKHDXXXXXXXXXXXXXXXXXXXXXX 1265
+ +SQ+GD+ K+ + GET V F+ YF F HD
Sbjct: 1344 LNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAF 1403
Query: 1266 XIKRFNFQNR 1275
+ + NFQ R
Sbjct: 1404 FVAKLNFQKR 1413
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7PC80 | PDR1_ORYSJ | No assigned EC number | 0.7014 | 0.9843 | 0.8549 | no | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5976 | 0.9858 | 0.8603 | N/A | no |
| Q8GU92 | PDR2_ORYSJ | No assigned EC number | 0.7094 | 0.9898 | 0.8620 | no | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.7242 | 0.9890 | 0.8654 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.7243 | 0.9725 | 0.8713 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6880 | 0.9843 | 0.8709 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7294 | 0.9772 | 0.8688 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7131 | 0.9749 | 0.8655 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.7234 | 0.9890 | 0.8654 | N/A | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3053 | 0.8870 | 0.8516 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5312 | 0.9764 | 0.8604 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1275 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-103 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-95 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-73 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-62 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-55 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-55 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 7e-50 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-45 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-44 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-43 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-39 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-35 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-32 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-31 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-30 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-27 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-27 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-24 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-23 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-14 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 9e-14 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-13 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-13 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-12 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 8e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-10 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-10 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-09 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 9e-09 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-08 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-08 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-08 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-08 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-08 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-07 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-07 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-07 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-07 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-07 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-07 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 6e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-07 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-07 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-06 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-06 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-06 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-06 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-06 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-06 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 7e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-05 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-05 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-05 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-05 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-05 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-05 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-05 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-05 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-05 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 6e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-05 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-05 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-05 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-05 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 9e-05 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-04 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-04 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-04 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-04 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-04 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-04 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-04 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-04 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 6e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 6e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-04 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 0.001 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 0.001 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.001 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.001 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.001 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.001 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.002 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 0.002 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.002 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.003 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 0.003 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.003 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 0.003 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.003 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.003 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 0.004 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.004 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1866 bits (4836), Expect = 0.0
Identities = 773/1281 (60%), Positives = 968/1281 (75%), Gaps = 9/1281 (0%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LK SG +TYNG+ ++EFVP++T+AYISQ+DVH+G
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG 252
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV+ETL FSARCQGVG+RYD+L+ELARREK+AGI P+ ++D++MKA A EG +++++T
Sbjct: 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLIT 312
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGDEM+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIV ++Q +H+ T ++SLLQPAPET+DLFDDIILLS+ QIVYQGPR+ +L+FFES
Sbjct: 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKG ADFLQEVTS+KDQ+QYW + PYR+++ EF+E F+SF VG +L +EL
Sbjct: 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELS 492
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK +SH AAL Y V K ELLKA +E LLMKRN+FVY+FK Q+ +A ++ T
Sbjct: 493 VPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIAST 552
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+MH + DG +Y+GA F++++ MFNG +++++ I +LPVFYKQRDL F+ W
Sbjct: 553 VFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 612
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
+ LP ++L IPIS +E VWV +TYY IGF P R FKQ LL+ L+ QMA+ +FR IA+
Sbjct: 613 FTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
R MI+A + G+ VLL++F GGF+L + +I WW W YW SP+ Y NA+ NE F
Sbjct: 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732
Query: 541 SW-RKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
W K S+++ LG VL F WYW+G+GA +GF +LFN+ FTL+LT+LN
Sbjct: 733 RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLG 792
Query: 600 KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTV 659
K +A+IS+E+ G LS+ N++ + + S ++ S
Sbjct: 793 KKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAA-- 850
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
+ PK RGMVLPF P +++FD+V Y VDMP EMK QG+ ED+L LL V+GAFRPGVLT
Sbjct: 851 NGVAPK-RGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLT 909
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
ALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETF RISGYCEQNDIHSP VT
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 969
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLT 839
V ESL+YSA+LRLP EV E + MF++E+MELVEL+ L+ ++VGLPG +GLSTEQRKRLT
Sbjct: 970 VRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLT 1029
Query: 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1030 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1089
Query: 900 LFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEI 959
L LMKRGGQ IY GPLGR+S +I YFE IPGV IK+ YNPATWMLEV++ + E+ L I
Sbjct: 1090 LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI 1149
Query: 960 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 1019
DF + YK S LY+RNKAL++ELS P PG+ DLYF T Y+QS + Q +CLWKQ W+YWR+
Sbjct: 1150 DFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRS 1209
Query: 1020 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPV 1079
P Y VRF FT AL GT+FW +GTK DL +G+MY AV F+G CS+VQP+
Sbjct: 1210 PDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPM 1269
Query: 1080 VAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFW 1139
VAVER VF RE+ AGMYSA+PYA AQV+ EIPY+ + ++ Y +IVYAM+ FEW AAKFFW
Sbjct: 1270 VAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFW 1329
Query: 1140 YLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1199
+ F FFS LYFT+YGMMTV++TPN +AAI + FYGL+N+FSGF IPR +IP WW WY
Sbjct: 1330 FYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWY 1389
Query: 1200 YWANPVAWTMYGLVASQFGDVEDK-----MESGETVKQFVRSYFDFKHDFLGVVAVVVAA 1254
YW PVAWT+YGL+ SQ+GDVED T+K +++ ++ + DF+G VA V+
Sbjct: 1390 YWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVG 1449
Query: 1255 FAVLFGVLFAVGIKRFNFQNR 1275
F V F +FA I+ NFQ R
Sbjct: 1450 FTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1109 bits (2871), Expect = 0.0
Identities = 383/1294 (29%), Positives = 599/1294 (46%), Gaps = 137/1294 (10%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLD-SKLKFSGRVTYNGHGMDEFVPQRTA--AYISQHDV 57
+T++LG P SG +TLL +A D + G +TY+G +E Y ++ DV
Sbjct: 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
H +TV ETL F+ARC+ +R D ++ +
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH------------------------- 183
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ D Y+ GL +T VG++ VRG+SGG++KRV+ E +G A D + GLDS
Sbjct: 184 -IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237
+T + + +++ + +IL+ T ++++ Q + + Y+LFD +I+L + +Y GP + +F
Sbjct: 243 ATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
Query: 238 ESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMP-YRFVTAQEFSEAFQSFTVGQKLA 296
E MGFKCP+R+ ADFL +TS ++Q E R T QEF +++ +L
Sbjct: 303 EKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKKVPR--TPQEFETYWRNSPEYAQLM 359
Query: 297 DELRTPFDKC--------------KSHP-AALTTKMYGVGKKELLKANISRELLLMKRNS 341
E+ D+C + Y V +K ++R L MK N
Sbjct: 360 KEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419
Query: 342 FVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTI 401
+F + MAL+ ++F+ + SD GA FFA++ F+ + +I+
Sbjct: 420 SFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIASMY 476
Query: 402 AKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQF 461
P+ K R Y A A+ + I +IP +E V+ + Y+++ F GR F
Sbjct: 477 EARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL 536
Query: 462 LLLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYW 521
L+L + S LFR I A + + AM+ + +LL L + GF + R + W W Y+
Sbjct: 537 LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYY 596
Query: 522 CSPMMYAQNAIVANEFFGHSWRKFT----SNSNETLGV--QVLKSRGFFP---------- 565
+P+ YA +++ NEF G + + LGV +V G P
Sbjct: 597 VNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDY 656
Query: 566 -------HAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRI 618
+ W G IGF + F + L F G +
Sbjct: 657 LKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK------------------GAKQ 698
Query: 619 GGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSL 678
G + GS K E+ D + G VL +
Sbjct: 699 KGEILVFRRGSLKRAKKAGETSASNKNDI------------------EAGEVLGSTDLTD 740
Query: 679 TFDEVTYSVDMPKEMKL-----------QGILEDKLMLLNGVSGAFRPGVLTALMGVSGA 727
D+V DM KE I ++K ++LN V G +PG LTALMG SGA
Sbjct: 741 ESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGA 800
Query: 728 GKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYS 787
GKTTL++VLA R T G ITG + +F R GY +Q D+H P TV ESL +S
Sbjct: 801 GKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFS 860
Query: 788 AWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVAN 847
A+LR P V + ++EE+++L+E+ ++VG+PGE GL+ EQRKRLTI VELVA
Sbjct: 861 AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAK 919
Query: 848 P-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE FD L L+++G
Sbjct: 920 PKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
Query: 907 GQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIYK 966
GQ +Y G LG +S +I YFE G + NPA WMLEV + D+ ++++
Sbjct: 980 GQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWR 1038
Query: 967 GSELYRRNKALIEELSRPAPGSKDLYFPTH---YTQSFFMQCVACLWKQHWSYWRNPPYT 1023
S Y+ K ++ L ++D P Y S + Q LW+ YWR P Y
Sbjct: 1039 NSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYL 1098
Query: 1024 AVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVE 1083
+F T AL G F+ +GT + Q L N M +++ A + P VA
Sbjct: 1099 YSKFFLTIFAALFIGFTFFKVGTSL---QGLQNQMFAVFMATVLFNPLIQQYLPPFVAQR 1155
Query: 1084 RAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAK------- 1136
RE+ + +S + + AQ+ +EIPY V +++ I Y +GF W A+K
Sbjct: 1156 DLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHER 1215
Query: 1137 FFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWW 1196
+ LYF+ G M ++ PN AA+++ L + + F G + P +R+P +W
Sbjct: 1216 GVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFW 1275
Query: 1197 RWYYWANPVAWTMYGLVASQFGDVEDKMESGETV 1230
+ Y +P + + L+++ DV + E +
Sbjct: 1276 IFMYRCSPFTYLVQALLSTGLADVPVTCKVKELL 1309
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-103
Identities = 112/239 (46%), Positives = 141/239 (58%), Gaps = 47/239 (19%)
Query: 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 734
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 735 VLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 794
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = 3e-95
Identities = 176/593 (29%), Positives = 284/593 (47%), Gaps = 45/593 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQETFTR 763
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
IS Y +Q+D+ P +TV E L++ A LR+P V + ++ ++E+++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 824 LPGE-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 882
+PG GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 883 VCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPA 942
+CTIHQPS ++FE FD++ LM G+ Y+G + G P EN YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQAVPFFSDL-GHPCPEN----YNPA 272
Query: 943 TWMLEVTAKSQELTLEIDFT-----DIYKGSELYRRNKALIEELSRPAPG---SKDLYFP 994
+ ++V A E D + S++ R S A G +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEG 332
Query: 995 THYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDL 1054
Y S++ Q A L + S R+P VR + T + A+ G ++ G K Q
Sbjct: 333 IGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQ-- 390
Query: 1055 FNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIF 1114
N G+++ + + Q V V E VF RE +G+Y Y A+ + E+P
Sbjct: 391 -NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFI 449
Query: 1115 VLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYF---TFYGMMTVAMTPNHHIAAIV 1171
+L +++ I Y MIG + +L F+F L T +G + + +A V
Sbjct: 450 ILPALFTSITYWMIGLR---SGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506
Query: 1172 SILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMY---GLVASQFGDVEDK----- 1223
F + +F GF I IP++++W + ++W Y GL+ +Q+ DV++
Sbjct: 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIECTSA 563
Query: 1224 ------MESGETV-KQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKR 1269
SGE + + D D +G+V ++ F +L + I+R
Sbjct: 564 NTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIF-FFRLLAYFALRIRIRR 615
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 1e-73
Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 45/237 (18%)
Query: 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 736
+L+F +T +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 737 AGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 796
AGR+TG ++G + I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 797 DSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 857 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 6e-62
Identities = 146/615 (23%), Positives = 265/615 (43%), Gaps = 87/615 (14%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++G +GKTTL+ ALA + +K SG V NG +D + +AY+ Q D+ I +T
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
VRE L F A + M + ++EK + VL
Sbjct: 116 VREHLMFQAHLR-------MPRRVTKKEKRERVD-------------------EVLQA-- 147
Query: 124 LKVLGLEVCDDTLVGDE-MVRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTF 181
LGL C +T +G V+G+SGG++KR+ E++ P L LF DE ++GLDS +
Sbjct: 148 ---LGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAY 203
Query: 182 QIVNSIRQNIHILNG--TAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239
+V ++ + T + ++ QP+ E ++LFD IIL+++ ++ Y G + + FF
Sbjct: 204 SVVQVLK---GLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260
Query: 240 MGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYR----FVTAQEFSEAFQSFTVGQKL 295
+G CPE ADF +V + +P ++ ++F +G+ +
Sbjct: 261 LGHPCPENYNPADFYVQVLA-----------VIPGSENESRERIEKICDSFAVSDIGRDM 309
Query: 296 ADELRTPFDKCKSHP------------AALTTKMYGVGKKELLKANISRELLLMKRNSFV 343
K A+ T+ Y + K+ L ++ R+ LL+K
Sbjct: 310 LVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWL--SVLRDPLLLK----- 362
Query: 344 YIFKLTQLSSMALVSMTLFFRTKMHKDSVSD--GGIYVGATFFAVMMTMFNGMSDISMTI 401
+L Q A++ ++ + + V + G ++ F MT N I++
Sbjct: 363 --VRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALF----LFLTNMTFQNVFPVINVFT 416
Query: 402 AKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQF 461
A+LPVF ++ Y AY L I ++P+ + A++ +TY++IG
Sbjct: 417 AELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFL 476
Query: 462 LLLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYW 521
L+ LV +A++ I+ A + +A++ G ++ FGGF ++ D I ++ W +
Sbjct: 477 FLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY 536
Query: 522 CSPMMYAQNAIVANEFFGHSWRKFTSNSNETL----GVQVLKSRGFFPHAYWYWLGLGAT 577
S Y ++ N++ + TS + G +L++ F +L L
Sbjct: 537 LSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSF--RNADLYLDLIGL 594
Query: 578 IGFVLLFNIGFTLSL 592
+ + F + +L
Sbjct: 595 VILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 3e-55
Identities = 81/212 (38%), Positives = 123/212 (58%), Gaps = 10/212 (4%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFTR 763
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN--PLRQSL 821
Y Q+DI P +TV E+L Y+A LRLP S+ + E + L +L + +L
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLP-RKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R
Sbjct: 141 V-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195
Query: 882 VVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913
V+ TIHQP D+F FD + L+ G +Y G
Sbjct: 196 VILTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 7e-55
Identities = 138/562 (24%), Positives = 248/562 (44%), Gaps = 74/562 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISGYP----KK 757
+L + G +PG LT ++G G+G +TL+ +A T G+ + G IT G KK
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGITPEEIKK 134
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETQKMFIEEIMELVE--- 813
+ Y + D+H P +TV E+L ++A + P D +++ + + I ++
Sbjct: 135 H--YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY 192
Query: 814 -LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA---AIVM 869
L+ R + VG G+S +RKR++IA + I D T GLD+ A +
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGI 929
+T N +DT T + I+Q S D +E FD++ ++ G +IY GP + +YFE
Sbjct: 253 KTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYEG-YQIYFGP----ADKAKQYFE-- 303
Query: 930 PGVENIKDGY------NPATWMLEVTAKSQELTLE----------IDFTDIYKGSELYRR 973
K G+ A ++ +T+ ++ +F ++ S Y
Sbjct: 304 ------KMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY-- 355
Query: 974 NKALIEELSRP-----APGSKDLYFPTH-------------YTQSFFMQCVACLWKQHWS 1015
L++E+ +K+ Y +H YT SF MQ CL +
Sbjct: 356 -AQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLR 414
Query: 1016 YWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSS 1075
NP +T ++AL ++F+++ K D ++ G+++ A+ F
Sbjct: 415 MKGNPSFTLFMVFGNIIMALILSSVFYNL---PKNTSDFYSRGGALFFAILFNAFSSLLE 471
Query: 1076 VQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAA 1135
+ + R + + + +Y A A ++ EIP+ + S V+ II+Y M+ F A
Sbjct: 472 IASMYE-ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAG 530
Query: 1136 KFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLW 1195
+FF+YL +F L + A+T A + + ++++GF IPR + W
Sbjct: 531 RFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGW 590
Query: 1196 WRWYYWANPVAWTMYGLVASQF 1217
+W Y+ NP+A+ L+ ++F
Sbjct: 591 SKWIYYVNPLAYAFESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 7e-50
Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 7/216 (3%)
Query: 1003 MQCVACLWKQHWSYWRNPPYT-AVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSM 1061
Q A L ++ WR+P R + ++AL FGT+F ++ T + N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1062 YTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYG 1121
+ ++ F + + PV ER V RE + +YS Y A++++E+P + + ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1122 IIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNV 1181
+IVY M+G ++FF +L + + L + G+ A+ P+ A+ + L +
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1182 FSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQF 1217
SGF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 8e-45
Identities = 70/239 (29%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQETFTR 763
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+ R
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRR 78
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
GY Q P +TV E+L + A L + ++E + IEE++EL L V
Sbjct: 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKKV- 134
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R G +
Sbjct: 135 ----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI 190
Query: 884 CTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPA 942
+ E D + ++ G I G L F G +E + A
Sbjct: 191 LLSTHILEEAEELCDRVIILNDGKI-IAEGTPEE----LKEKFGGKGVIELEPERLELA 244
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 6e-44
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 8/216 (3%)
Query: 324 ELLKANISRELLLMKRNSFV-YIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGAT 382
LKA + RE L R+ + +++L Q MALV T+F D+ G G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 383 FFAVMMTMFNGMSDISMT-IAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWV 441
FF+++ F+ ++ IS I + V ++ Y+ AY L ++++PIS L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 442 FLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFA 501
+ Y+++G + R F L+LLL AS L FIAA + A G +LL L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 502 FGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEF 537
GF + D + W W Y+ +P+ YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 6e-43
Identities = 130/498 (26%), Positives = 238/498 (47%), Gaps = 63/498 (12%)
Query: 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLM-----------------LLNGVSGAFRPGV 717
P +L F +V Y V MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKFEN-MKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837
+TV E+L++ + LRLP + + + + E ++ + L +++G G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 897
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 898 DELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTL 957
D + ++ G+ ++ G G + + YFE + + NPA ++L +L
Sbjct: 275 DSVLVLSE-GRCLFFGK-GSDA---MAYFESVGFSPSFP--MNPADFLL-------DLAN 320
Query: 958 EIDFTDIYKGSELYRRNKALIEEL-SRPAPGSKDLYFPTHYTQ----------------- 999
+ TD E ++L+ + AP K +H+ Q
Sbjct: 321 GVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSS 380
Query: 1000 ------SFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQD 1053
++F Q + L ++ ++ + +R AL G M+W + D
Sbjct: 381 DRISISTWFNQ-FSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFR-----D 434
Query: 1054 LFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYI 1113
+ + +G ++ F G + V ERA+F +E+ +GMY+ Y A+++ ++P
Sbjct: 435 VQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPME 494
Query: 1114 FVLSSVYGIIVYAMIGFE 1131
+L +++ + Y M G +
Sbjct: 495 LILPTIFLTVTYWMAGLK 512
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 1e-39
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 138 GDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGT 197
G+E VRGISGG++KRV+ E +V A L D + GLDSST +I+ IR +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 198 AVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+SL Q + E YDLFD +++L + + +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 1e-35
Identities = 162/636 (25%), Positives = 282/636 (44%), Gaps = 89/636 (13%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQET 760
KL +L SG +P +T L+G +GKTTL+ LAG+ ++G IT +GY +
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLR---------------------LP-PEVD- 797
+ S Y QND+H +TV E+L +SA + P EVD
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 798 --------SETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS 849
+ + ++++ L+ + ++VG G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 850 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ + F+ FD++ L+ GQ
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQ 415
Query: 909 EIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIYKG- 967
+Y GP H++ +FE G + + A ++ EVT+K + D Y+
Sbjct: 416 IVYQGPRD----HILEFFESC-GFK-CPERKGTADFLQEVTSKKDQEQYWADRNKPYRYI 469
Query: 968 --SELYRRNKA------LIEELSRPAPGSKD----LYFPTHYTQSFFMQCVACLWKQHWS 1015
SE R K+ L ELS P S+ L F + M+ + W + W
Sbjct: 470 SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPK--MELLKACWDKEWL 527
Query: 1016 YWRNPPYTAVRFLFTTV----IALTFGTMFW--DMGTKMKRNQDLF--NAMGSMYTAVFF 1067
+ A ++F TV +A T+F +M T+ + + L+ + SM +F
Sbjct: 528 LMKR---NAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFN 584
Query: 1068 LGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAM 1127
A+ +Q + VF +++ + + ++ IP + S V+ +I Y
Sbjct: 585 GFAELALMIQRL-----PVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYS 639
Query: 1128 IGFEWIAAKFFWYLFFMFF----SLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFS 1183
IGF A++FF L +F + F + M + A+V +L + L
Sbjct: 640 IGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLL----G 695
Query: 1184 GFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVE--DKMESGETVK--QFVRSYFD 1239
GF++P+ IP WW W YW +P+++ L ++ +KM S + + V + FD
Sbjct: 696 GFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFD 755
Query: 1240 FKHD----FLGVVAVVVAAFAVLFGVLFAVGIKRFN 1271
D ++GV A++ F +LF VLF + + N
Sbjct: 756 VFTDKNWYWIGVGALL--GFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 4e-34
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 38/229 (16%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ +LG SGKTTLL A++G+++ SG++ +NG Q+ AY+ Q D+ +
Sbjct: 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+TVRETL ++A + R+ I+ DV ++ A
Sbjct: 95 GLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLRDLA---------- 132
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSST 179
T +G +V+GISGG+++RV+ +++ P + L +DE ++GLDS T
Sbjct: 133 -------------LTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-LILDEPTSGLDSFT 178
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+V+++ Q N ++++ QP + + LFD I+LLS +IVY G
Sbjct: 179 ALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-32
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 38/219 (17%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKK 757
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
+ E + Y + D+H P +TV E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
G G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 876 VD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913
D T +++Q S +I++ FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 5e-32
Identities = 135/554 (24%), Positives = 258/554 (46%), Gaps = 76/554 (13%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
+LGP SGK+TLL ALAG++ F+G + N + + +RT +++Q D+ +T
Sbjct: 99 VLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLT 156
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
VRETL F + L L + + QE ++ +
Sbjct: 157 VRETLVFCS-----------LLRLPK--------------------SLTKQEKILVAESV 185
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQ 182
+ LGL C++T++G+ +RGISGG++KRV+ EM++ P+L L +DE ++GLD++ ++
Sbjct: 186 ISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL-LILDEPTSGLDATAAYR 244
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGF 242
+V ++ T V S+ QP+ Y +FD +++LS+ + ++ G + +FES+GF
Sbjct: 245 LVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303
Query: 243 KCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQ-KLADELRT 301
ADFL ++ + Q +E P Q ++ + + K A E+
Sbjct: 304 SPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVASYNTLLAPKVKAAIEMSH 360
Query: 302 PFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKR-------NSFVYIFKLTQLSSM 354
+ +TK + + + ++ +L++R SF ++ Q+ +
Sbjct: 361 FPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESF-NTLRVFQVIAA 419
Query: 355 ALVSMTLFFRTKMHKD--SVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLP----VFY 408
AL++ +++ H D V D +G FF +++F G+ ++ P +F
Sbjct: 420 ALLAGLMWW----HSDFRDVQD---RLGLLFF---ISIFWGVFPSFNSVFVFPQERAIFV 469
Query: 409 KQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLL--- 465
K+R Y +Y + + +P+ + +++ +TY++ G P +G L+LL
Sbjct: 470 KERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYV 529
Query: 466 LVNQ-MASALFRFIAAAGR-NMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCS 523
LV+Q + AL I A + + IV ++ +FVL GGF + + + W + S
Sbjct: 530 LVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLT-----GGFYVHK--LPSCMAWIKYIS 582
Query: 524 PMMYAQNAIVANEF 537
Y+ ++ ++
Sbjct: 583 TTFYSYRLLINVQY 596
|
Length = 659 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-31
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT- 762
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + +
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 763 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+ GYC Q D +TV E L + A L+ P+ K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 882 VVCTIH 887
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 1e-30
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 758
K L+GVS PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ R GY Q P TV E L Y AWL+ + S+ K ++E++ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 879 GRTVVCTIHQPSIDIFESFDELFLMKRG 906
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-29
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 542 WRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKP 601
W K S SNETLG VLKSRG F AYWYW+G+GA +GF +LFNI FTL+LT+LN K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 602 RAVIS 606
+A++S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 761
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 762 TRISGYCEQNDIHSP---FV--TVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVE 813
R G QN P F TV E + + E + E + +EE +ELV
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFG------LENLGLPEEEIEERVEEALELVG 123
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 124 LEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLK 178
Query: 874 NTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
G+T++ H + E D + +++ G
Sbjct: 179 KLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-27
Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 51/273 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTAAYISQHDVH 58
+ LLGP +GKTTLL LAG L SG + G+ + + + R Y+ Q
Sbjct: 33 IFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
E+TVRE L F AR G+ R E+
Sbjct: 90 YPELTVRENLEFFARLYGLSKEEAE----ERIEE-------------------------- 119
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
L++ GLE ++ VR +SGG K+R++ ++ L +DE ++GLD
Sbjct: 120 ----LLELFGLE-----DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 179 TTFQIVNSIRQNIHILNGTAVIS--LLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDF 236
+ +I +R+ T ++S +L+ E +L D +I+L+D +I+ +G E + +
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKEK 227
Query: 237 FESMGFKC--PERKGVADFLQEVTSRKDQQQYW 267
F G PER +A+ L+ + K +++
Sbjct: 228 FGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVH 58
M L+LG P SG +TLL ALA + + + G + YNG EF Y+S+ DVH
Sbjct: 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94
Query: 59 IGEMTVRETLAFSARCQG 76
+TVRETL F+ RC+G
Sbjct: 95 FPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L VS +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 764 ISGYCEQN---DIHSPFVTVYESLLYSAWLRLPP-EVDSETQKMFIEEIMELVELNPLRQ 819
I GY Q D P ++V + +L + S+ K ++E +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD 127
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 880 RTVVCTIHQPSIDIFESFDELFLMKRG 906
T++ H + + E FD + L+ R
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 21/211 (9%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE--L 74
Query: 762 TRISGYCEQNDIHSPFVTVYESLL-----YSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+ Y Q+ +TVYE +L + P + D E +EE +EL+ L
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLEH 130
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 875
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 131 LADRPV-----DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185
Query: 876 VDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ G TVV +H ++ + D L L+K G
Sbjct: 186 REKGLTVVMVLHDLNLAARYA-DHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-23
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 29/212 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 763 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+ GY Q+ D +V E LL E+D+ ++ E +++ ++L L++
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQ--AETVLKDLDLYALKERH 123
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 124 ---PLS--LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 882 VVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913
V+ H D FL K + + +
Sbjct: 179 VIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 97.1 bits (243), Expect = 5e-23
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 761
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 882 VVCTIHQPSIDIFESFDELFLMKRG 906
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 27/213 (12%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFTR 763
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P +K+ R
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 764 ISGYCEQNDIHSPF-----VTVYE---SLLYSA--WLRLPPEVDSETQKMFIEEIMELVE 813
I GY Q S +TV + Y W R + D E ++E +E V
Sbjct: 77 I-GYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVG 128
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+ LR +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 129 MEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183
Query: 874 NTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
G+TV+ H + + FD + + R
Sbjct: 184 ELRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 3e-22
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 22/210 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79
Query: 763 R---ISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R I G+ Q+ + P +T E++ LP + +K E EL+E L
Sbjct: 80 RRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGVPKKERRERAEELLERVGL 130
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 876
L P E LS Q++R+ IA L +P II DEPT LD+ VM +R
Sbjct: 131 GDRLNHYPSE--LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK 188
Query: 877 DTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ G T+V H P ++ E D + ++ G
Sbjct: 189 EAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 6e-22
Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 19/222 (8%)
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 750
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 751 ISGYPKKQET-FTRIS-GYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIE 806
++ +K+ R G+ QN + P +TV E++ + + +K E
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 807 EIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
E++E++ L L P E LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRL--LKKKPSE--LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 867 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907
V+ +R + G+T++ H P ++ + D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 6e-21
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 49/207 (23%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K+
Sbjct: 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE--L 71
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R Y Q +EL+ L L
Sbjct: 72 ARKIAYVPQ-------------------------------------ALELLGLAHLADRP 94
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 880
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R G+
Sbjct: 95 F-----NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK 149
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRGG 907
TVV +H ++ D + L+K G
Sbjct: 150 TVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-20
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 17/206 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P ++
Sbjct: 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--- 71
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
I G Q+ P +TV E++ + LR P+ + + + E++ELV L L
Sbjct: 72 RNI-GMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGLLNRY 127
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGR 880
LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G
Sbjct: 128 P-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRG 906
T + H + D + +M G
Sbjct: 183 TTIYVTHDQE-EALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-20
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 47/205 (22%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
LN VS G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 881
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 882 VVCTIHQPSIDIFESFDELFLMKRG 906
VV H + D + +++ G
Sbjct: 154 VVLVTHDLD-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 5e-20
Identities = 67/257 (26%), Positives = 109/257 (42%), Gaps = 43/257 (16%)
Query: 663 QPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALM 722
+ K + LP + F+ V++ D +L +S PG A++
Sbjct: 457 EGDKTLIHLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIPPGEKVAIV 505
Query: 723 GVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPF 777
G SG+GK+TL+ +L G Y G I + G + R GY Q+
Sbjct: 506 GRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP----- 556
Query: 778 VTVYESLLYSAWLR-----LPPEVDSET--QKMFIEEIMELVELNPLR-QSLVGLPGESG 829
L+S +R PE E + + E +E P+ + VG G +
Sbjct: 557 ------FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG-AN 609
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+ H+
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRL 668
Query: 890 SIDIFESFDELFLMKRG 906
S S D + ++ +G
Sbjct: 669 S--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 8e-20
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 20/216 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFT--- 762
L VS G L+G +G+GK+TL+ +L G +G + + G E
Sbjct: 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSEKSLLEL 77
Query: 763 -RISGYCEQNDIHSPFV-TVYESLLYSA-WLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+ G QN F TV + + + L LP E E + E +ELV L L
Sbjct: 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE----RVAEALELVGLEELLD 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 878
LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++ +
Sbjct: 134 RPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188
Query: 879 GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914
G+T++ H + E D + ++ G+ + G
Sbjct: 189 GKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+T ++GP +GK+TLL ALAG+ L SG V NG +D+ ++ Y+ Q D+
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRRTG-LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95
Query: 61 EMTVRETLAFSARCQGV 77
+TVRETL F+A+ +G+
Sbjct: 96 TLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 8e-19
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 757
+L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 758 QETFTRIS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPP-EVDSETQKMFIEEIMEL 811
R G Q+ + + V + + + L L EV+ + E +
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERR-----VREALTA 114
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
V + LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++
Sbjct: 115 VGASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169
Query: 872 VRNTVDTGRTVVCTIH 887
+R G TVV + H
Sbjct: 170 LRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 9e-19
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
LR+ + +P LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R
Sbjct: 70 ELRRRIGYVPQ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 876 VDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ GRTV+ H P + D + ++K G
Sbjct: 127 AEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 27/202 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY------PKKQE 759
L VS + PG AL+G SGAGK+TL+ L G +G++ I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETQKMFIEEIME 810
R G Q ++V E++L + + L P+ E Q+ +E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK--EEKQRAL--AALE 130
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
V L LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 871 TVRN-TVDTGRTVVCTIHQPSI 891
++ + G TV+ ++HQ +
Sbjct: 186 LLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-18
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 27/202 (13%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--- 756
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 757 KQETFTRISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
E + + + QN P++ T+ E++ L S+ + I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENI------LLARPDASDEE---IIAALDQAG 435
Query: 814 LNPLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
L GL +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 869 MRTVRNTVDTGRTVVCTIHQPS 890
++ ++ +TV+ H+
Sbjct: 496 LQALQELAK-QKTVLVITHRLE 516
|
Length = 559 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQETFT 762
++GVS +PG +T L+G +GAGKTT + +LAG G T+ G+ + E
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEARR 78
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R+ G+ + +T E+L Y A L + + +EE+ + + + L V
Sbjct: 79 RL-GFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV 134
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 882
G G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+ +
Sbjct: 135 G-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI 189
Query: 883 VCTIH 887
+ + H
Sbjct: 190 LFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 4e-18
Identities = 33/86 (38%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL 202
RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ +R+ + T + S+
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR-LADTGRTIICSI 168
Query: 203 LQPAPETYDLFDDIILLSDAQIVYQG 228
QP+ E ++LFD ++LLS +++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 4e-18
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 36/198 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ---- 758
L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 759 ---ETFTRISGYCEQNDIHSPF--VTVYESLL--------YSAWLRLPPEVDSETQKMFI 805
TF Q F +TV E+++ L + E ++
Sbjct: 76 GIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARER-A 124
Query: 806 EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 125 EELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
Query: 866 AIVMRTVRNTVDTGRTVV 883
+ +R + G TV+
Sbjct: 180 EELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 761
++GV+ R G + +G +GAGKTT + +L R T G ++GY ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS----GTARVAGYDVVREPRKV 64
Query: 762 TRISGYCEQNDIHSPFVTVYESL-------LYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
R G Q + +V E L + LP + E EE++EL EL
Sbjct: 65 RRSIGIVPQ------YASVDEDLTGRENLEMMGRLYGLPKDEAEER----AEELLELFEL 114
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 115 GEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169
Query: 875 TVDTGRTVVCTIH 887
+ G T++ T H
Sbjct: 170 LKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 6e-18
Identities = 56/201 (27%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 758
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 759 ------ETFTRISGYCEQNDIHSPFVTVYESLL--------YSAWLRLPPEVDSETQKMF 804
TF Q P +TV E++ S L P E +
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 805 I-EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 864 AAAIVMRTVRNTVDT-GRTVV 883
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 39/228 (17%)
Query: 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 735
+ F V++S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 736 LAG--RKTGGYI-TGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL 792
LAG + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 793 PPEVDSETQKMFIEEIMELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVE 843
P D E I+ EL + + P GE G LS QR+ + +A
Sbjct: 103 -PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 844 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-17
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 34/231 (14%)
Query: 670 VLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGK 729
V SL F V+ + + L VS PG AL+G SGAGK
Sbjct: 314 VTAAPAPSLEFSGVSVA------------YPGRRPALRPVSFTVPPGERVALVGPSGAGK 361
Query: 730 TTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLY 786
+TL+++L G T G I + ++ +++ + Q+ PF+ ++
Sbjct: 362 STLLNLLLGFVDPTEGSIAVNGVPLADAD--ADSWRDQIAWVPQH----PFL-FAGTIAE 414
Query: 787 SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL-VGL-----PGESGLSTEQRKRLTI 840
+ L P D+E I E +E L+ +L GL G +GLS Q +RL +
Sbjct: 415 NIRLARPDASDAE-----IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLAL 469
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
A + + ++ +DEPT+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 470 ARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 1e-17
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+ Y Q + L+S +R E I
Sbjct: 75 RKNIAYVPQ-----------DPFLFSGTIR--------------ENI------------- 96
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 97 --------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 882 VVCTIHQPSIDIFESFDELFLMKRG 906
V+ H+ S D + ++ G
Sbjct: 148 VIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 32/198 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 761
L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 762 TRISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
R G Q + + TV+E++ + LR E ++ EEI E+V
Sbjct: 76 RRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE-- 119
Query: 817 LRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
+ VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 -KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 872 VRNTVDT-GRTVVCTIHQ 888
+R+ G T + H
Sbjct: 179 IRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-17
Identities = 65/193 (33%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFT 762
L+GVS PG A++G SG+GK+TL+ LAG + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R C Q D H TV E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 823 -GLP---GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
GL GE G LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 877 DTGRTVVCTIHQP 889
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT- 762
+ GVS R G + L+G +GAGKTT + +L + T G T++G+ +E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 763 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ +T +E+L A L V ++ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 880
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 881 TVVCTIH 887
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
I E + P +T E+L A L + I+E++++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 884 CTIHQ 888
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 760
L ++ PG A++G SGAGK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 761 FTRISGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETQKMFIEEIMEL 811
RI G Q+ +TV E++L + + L E D E +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED-------KERALSA 129
Query: 812 VELNPLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
+E VGL + LS Q++R+ IA L P +I DEP + LD + +
Sbjct: 130 LER-------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 867 IVMRTVRN-TVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914
VM ++ + G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 183 QVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-17
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-ITISGYPKKQETFT 762
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 763 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ P VYE++ EV + + + +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 882 VVCTIHQPSI 891
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 55/196 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA-----YISQHDVH 58
LLG +GKTT L L G+L SG NG+ + R AA Y Q D
Sbjct: 33 LLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI---RTDRKAARQSLGYCPQFDAL 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
E+TVRE L F AR +G+ E
Sbjct: 87 FDELTVREHLRFYARLKGLPKS----------------------------------EIKE 112
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDS 177
+ L+VLGL + +SGG K++++ ++G P++ L +DE ++GLD
Sbjct: 113 EVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSV-LLLDEPTSGLDP 166
Query: 178 STT---FQIVNSIRQN 190
++ + ++ +R+
Sbjct: 167 ASRRAIWDLILEVRKG 182
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ETFTRISGYCE 769
+T + G SGAGK+TL+ +AG + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 770 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829
Q P + V E+L + L + + E ++ ++E+++L+ L+ L
Sbjct: 82 QQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNRYPA-----Q 131
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS +++R+ +A L A P ++ +DEP S LD ++ ++ ++ P
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NLNIP 184
Query: 890 SIDIFESFDELFLM 903
I + E +
Sbjct: 185 VIFVTHDLSEAEYL 198
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFT 762
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 763 RIS-----GYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+ G Q +PF ++Y+++ Y L + + EE+ E VE
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLH---GIKLK------EELDERVE--- 121
Query: 817 LRQSL--VGLPGE-------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
++L L E GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 --EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 868 V 868
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 21/207 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGYPKKQE---T 760
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R+ +Q + ++V ++L Y A L ++ + I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 879
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 880 RTVVCTIHQPSIDIFESFDELFLMKRG 906
+V+ H +D E+ D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 27/224 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFT 762
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 763 RIS-GYCEQNDIHSPFVTVYESLL-----YSAWLR----LPPEVDSETQKMFIEEIMELV 812
R G Q P ++V E++L Y++ R L + E + ++ L
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQALDA---LE 133
Query: 813 ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
+ L ++ S LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 134 RVGILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 873 R--NTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914
+ N D G TV+ +HQ +D+ + + + + + G+ ++ GP
Sbjct: 191 KDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQETFTR-IS 765
VS G +T L+G +GAGKTTL+ ++A +G +TI G + R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
+ +++ +T E+L Y A L + + K I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-- 132
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 885
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 886 IH 887
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 29/232 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P ++
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---- 76
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R G Q+ P +TV E++ + L++ ++ K +EE +ELV L
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 881
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T
Sbjct: 135 -----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 882 VVCTIHQPSIDIFESF---DELFLMKRG-------GQEIYVGPLGRHSCHLI 923
V H D E+ D + +M G +EIY P R I
Sbjct: 190 FVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-15
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRL--PPEVDSETQKMFIEEIMELVELNPLRQSL 821
G+ Q+ P +TV +++ + +R P E + + +EE++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADR- 133
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 880
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 134 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRGG-------QEIYVGP 914
T V H + E D + ++ +G E+Y P
Sbjct: 190 TTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 761
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 762 TRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+ Q+ + S P +T+ E + + E +K + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ P E LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YPHE--LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQET 760
+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 761 FTRIS-GYCEQNDIHSPFV-----TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
F R GY QN F TV E+L L L + S+ +K E+ E +E
Sbjct: 73 FRREKLGYLFQN-----FALIENETVEENLD----LGLKYKKLSKKEKR--EKKKEALEK 121
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
L L E LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 122 VGLNLKLKQKIYE--LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 875 TVDTGRTVVCTIHQPSI 891
D G+T++ H P +
Sbjct: 180 LNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 24/212 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 761
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLR-LPPEVDSETQKMFIEEIMELVELNPLRQS 820
RI GY + P + V + L+Y A L+ L E E ++ I+E +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 RV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 881 TVVCTIHQPSIDIFESF-DELFLMKRGGQEIY 911
TV+ + HQ +++ E D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-15
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 760
++ VS R G L+G SG+GK+TL +LAG + G I ++ ++G ++
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 761 FTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ Q+ S P +TV + L LR+ ++ + E++ELV L P
Sbjct: 367 RRIQMVF--QDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ L P E LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 421 EFLDRYPHE--LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 762 TRISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEVDSET--QKMFIEEIMELVELNPLR 818
R QN + PF TV E + R+P E + + + +L+ L
Sbjct: 76 HR--AVLPQNSSLAFPF-TVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTV 872
LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 873 RNTVDTGRTVVCTIHQPSIDIFESF-DELFLMKRG 906
R G V+ +H +++ + D + L+ +G
Sbjct: 185 RQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-15
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 21/207 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLR-LPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R QN P +TVYE++ + LR +P + ++E+ +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR----VKEVAKLLGLEHLLNRK 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TG 879
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 131 P-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLG 184
Query: 880 RTVVCTIHQPSIDIFESFDELFLMKRG 906
T + H ++ D + +M G
Sbjct: 185 TTTIYVTHDQ-VEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 44/232 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
GY Q D P++TV +++ L L +E + E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 824 L-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
L P + LS R+R+ +A L +P ++ +DEP S LDA + + +
Sbjct: 121 LSGFENAYPHQ--LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178
Query: 877 -DTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFE 927
+TG+TV+ H DI E+ +FL + V L ++ E
Sbjct: 179 RETGKTVLLVTH----DIDEA---VFL----ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 8e-15
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---E 759
+L VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
GY Q+D ++F I E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 880 RTVVCTIHQPSIDIFESFDELFLMKRGGQ 908
T + H+P S D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
L +G+S G L G +G+GKTTL+ ++AG G I
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK-------LDGGDIDDP 69
Query: 763 RISGYC----EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
++ C +N + P +TV E+L + A E+D I +E V L PL
Sbjct: 70 DVAEACHYLGHRNAMK-PALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL- 120
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R +
Sbjct: 121 ---AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 879 GRTVVCTIHQP 889
G V+ H P
Sbjct: 177 GGIVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 688 DMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGY 744
++ K K + ++ED VS G + L+G +GAGKTT ++ G R G
Sbjct: 8 NLAKAYKGRRVVED-------VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 745 ITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMF 804
I + IS P I GY Q ++VY++L+ A L++ ++ +E ++
Sbjct: 61 IIDDEDISLLPLHARARRGI-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDR 117
Query: 805 IEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
E+ME + LR S+ G+S LS +R+R+ IA L ANP I +DEP +G+D +
Sbjct: 118 ANELMEEFHIEHLRDSM----GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172
Query: 865 AAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFE 895
+ R + + D+G V+ T H + ++ + E
Sbjct: 173 VIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 30/213 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 763 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+ G Q F+ T+ E++ + E + +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIM 123
Query: 820 SLV-GL---PGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L G GE+G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 874 NTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ GRT + H+ S I + D++ ++ G
Sbjct: 184 KLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P +
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 763 RISGYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
I GY Q S F +TV E++L +R + + ++ +EE++E + LR+S
Sbjct: 76 GI-GYLPQE--ASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKS 129
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 130 KA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI 184
Query: 881 TVVCTIH 887
V+ T H
Sbjct: 185 GVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQ-KMFIEEIMELVELNPLRQSL 821
R G+ Q+ +TV++++ + ++ E E + + + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 880
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 133 --YPAQ--LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRG-------GQEIYVGP 914
T V H + E D + +M +G E+Y P
Sbjct: 189 TTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITI 751
+ G + LN VS G ++G SG+GK+TL +LAG + + +G+I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 752 SG--YPKKQET--FTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFI 805
G K+ F R Q+ S P TV L P + Q+ I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQR--I 121
Query: 806 EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
E+++ V L P L P E LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSF--LDRRPHE--LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 68/244 (27%), Positives = 104/244 (42%), Gaps = 35/244 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGNITISGYPKKQET 760
L+GV G + A++G SG+GK+TL+ ++ G R G I +I + E
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 761 FTRISGYCEQNDIHSPFVTVYES--LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
R+ G Q +TV+E+ +LP I ELV +
Sbjct: 84 RKRM-GVLFQQGALFSSLTVFENVAFPLREHTKLPES-----------LIRELVLMK--- 128
Query: 819 QSLVGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +
Sbjct: 129 LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188
Query: 873 RNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG--RHSCH-LIR-YFE 927
R D G TV+ H +D + + + G+ I G S +R +F
Sbjct: 189 RELNDALGLTVIMVTHD--LDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246
Query: 928 GIPG 931
GI
Sbjct: 247 GIRD 250
|
Length = 263 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA- 74
Query: 762 TRISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEVDSETQKMFIEEIMELVELN 815
R EQ+ + +TV + + S W P + + + EL+
Sbjct: 75 -RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTELS 128
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
L + S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 129 HLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 876 VDTGRTVVCTIH 887
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 38/218 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTGPGPDI 74
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
GY Q D P++TV +++ L E+ +++ E EL+EL VG
Sbjct: 75 --GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL-------VG 119
Query: 824 L-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
L P + LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 120 LAGFEDKYPHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177
Query: 877 -DTGRTVVCTIHQPSIDIFESF---DELFLMKRGGQEI 910
+T +TV+ H D+ E+ D + ++ I
Sbjct: 178 EETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 5e-14
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 760
L GVS G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 761 FTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNP 816
R GY + P +TV E+LL A+ R + + +E + EL L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
R+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 877 DTGRTVV 883
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 7e-14
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G++ + G +TA++G +GAGK+TL L G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 764 IS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
S G Q+ + F +VY+ + + A L+LP + E +K ++ ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK 137
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 879
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 ----PTHC-LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 880 RTVVCTIHQPSIDIFESF-DELFLMKRG 906
T++ H IDI + D +F+MK G
Sbjct: 193 LTIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 8e-14
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQET 760
++++G+S + G L+G +GAGKTT + +L G G+I++ G P + +
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHA 78
Query: 761 FTRISGYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R+ G Q D P TV E+LL + + L + + + ++E +L
Sbjct: 79 RQRV-GVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARALVPPLLEFAKLENKAD 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G
Sbjct: 134 AKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARG 188
Query: 880 RTVVCTIH 887
+T++ T H
Sbjct: 189 KTILLTTH 196
|
Length = 306 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-14
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 758
+ ML G+S G + G +G GKTTL+ +LAG R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ R Y P ++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 879 GRTVVCTIHQP 889
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 65/239 (27%), Positives = 102/239 (42%), Gaps = 52/239 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIG 60
+LGP SGK+TLL LAG L K K SG V +G + P+ + AY+ Q
Sbjct: 33 ILGPNGSGKSTLLKCLAGLL--KPK-SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+TV E + G P ++ +E +
Sbjct: 90 GLTVYELVLL------------------------GRYP------HLGLFGRPSKEDEEIV 119
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGL 175
+ L++LGLE D V + +SGG+++RV ++ ALA L +DE ++ L
Sbjct: 120 EEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARALAQETPILLLDEPTSHL 169
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
D + +++ +R ++ G V+ +L D +ILL D +IV QG E VL
Sbjct: 170 DIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 692 EMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNI 749
E + + L + +S G + G +GAGKTTL+ +LAG R G +
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YW 61
Query: 750 TISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
+E++ + Y +T E+L + W R ++ T I E +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEAL 115
Query: 810 ELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
V L L VG LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 116 AQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 870 RTVRNTVDTGRTVVCTIHQP 889
+ G V+ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 40/203 (19%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQ--- 758
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 759 -ETFTRISGYCEQNDIHSPFVTVYE--SLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
E R + + + + PF TV E ++ + E D+ + + V+L
Sbjct: 72 AELARRRAVLPQHSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQVDLA 125
Query: 816 PLR----QSLVGLPGESGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 865
L L G GE +QR +L A L P + +DEPTS LD
Sbjct: 126 HLAGRDYPQLSG--GE-----QQRVQL--ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 866 AIVMRTVRN-TVDTGRTVVCTIH 887
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 37/233 (15%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISGYPKK 757
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDG---- 67
Query: 758 QETFTRISGYCE----------QNDIHSPFVTVYESLLYSAW--LRLPPEVDSETQKMFI 805
E +S E Q + P VT L +A R + E K +
Sbjct: 68 -EDILELSPD-ERARAGIFLAFQYPVEIPGVTN-SDFLRAAMNARRGARGILPEFIK-EL 123
Query: 806 EEIMELVELNP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+E EL+ L+ L + + E G S ++KR I L+ P + +DEP SGLD
Sbjct: 124 KEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID 178
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM------KRGGQEI 910
A IV + + GR V+ H + + D++ ++ K G E+
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPEL 231
|
Length = 251 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
R G Q E++L++ +R + M +E ++E +L
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 816 PLRQSLVGLP-------GE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
+ LP GE +GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
Query: 867 IVMRTVRNTVDTGRTVVCTIHQPS 890
+MR + + GRTV+ H+ S
Sbjct: 176 AIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-13
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 35/217 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKP------VA 73
Query: 764 ISGYCEQND-----IH-----SPFVTVYESLLYSAWLRLP-PEVDSETQKMFIE--EIME 810
S + +H P ++V E++ +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 811 LVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ L+ LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDT-LVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+R G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETF 761
++NG+S G L+G +GAGK+T+ ++ G + G IT+ G P + +
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLAR 113
Query: 762 TRISGYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
RI G Q D TV E+LL + + + + + I ++E L +
Sbjct: 114 ARI-GVVPQFDNLDLEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADA 168
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
V S LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 169 RV-----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223
Query: 881 TVVCTIH 887
T++ T H
Sbjct: 224 TILLTTH 230
|
Length = 340 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 40/274 (14%)
Query: 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 735
+L + VT S ++ +S PG + L+G +GAGKTT +
Sbjct: 1 MALEIEGVTKSFG-------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRM 47
Query: 736 LAGRKTGGYITGNITISGYPKKQETFTRISGYC-EQNDIHSPFVTVYESLLYSAWLRLPP 794
+ G G IT +G P QE RI GY E+ ++ P +TV + L Y A L+ P
Sbjct: 48 ILGLLE--PTEGEITWNGGPLSQEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMP 103
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
+ + + + ++ +E +E+ + + LS ++++ ++ P ++ +D
Sbjct: 104 KAEIQKK---LQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILD 155
Query: 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914
EP SGLD ++ + + G T++ + H+ + E D L ++K+ GQ + G
Sbjct: 156 EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGT 213
Query: 915 L-------GR-----HSCHLIRYFEGIPGVENIK 936
+ G+ S + IPG+ I
Sbjct: 214 VEDIRRSFGKKRLVIESDLSLEELANIPGILKIT 247
|
Length = 300 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 20/218 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFT-RI 764
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
G+ Q+ +TV +++ + +R P K +EE++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDRY--- 127
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 883
+ LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 --PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 884 CTIHQPSIDIFESFDELFLMKRG-------GQEIYVGP 914
H + E D + +M G E+Y P
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 62/234 (26%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQH-D 56
L++GP SGK+TLL L G L SG V +G + + + R + Q+ D
Sbjct: 29 FVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
TV E +AF G+ ++ R +EA
Sbjct: 86 DQFFGPTVEEEVAFGLENLGL-PEEEI----EERVEEA---------------------- 118
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGL 175
L+++GLE D +SGGQK+RV ++ P + L +DE + GL
Sbjct: 119 -------LELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDI-LLLDEPTAGL 165
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDAQ 223
D + +++ +++ + T +I T+DL D +I+L D +
Sbjct: 166 DPAGRRELLELLKK-LKAEGKTIIIV-------THDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 66/253 (26%)
Query: 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM---- 733
+ F+ VT++ D +L VS G A++G SG+GK+T++
Sbjct: 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48
Query: 734 ---DVLAGRKTGGYITGNITISGYPKK---QETFTRISGYCEQ-----NDIHSPFVTVYE 782
DV +G I I G + ++ R G Q ND T+
Sbjct: 49 RFYDVSSGS---------ILIDGQDIREVTLDSLRRAIGVVPQDTVLFND------TIGY 93
Query: 783 SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP-------GESG--LSTE 833
++ Y T EE++E + + ++ P GE G LS
Sbjct: 94 NIRYGRP--------DATD----EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGG 141
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 893
+++R+ IA ++ NP I+ +DE TS LD + +R V GRT + H+ S I
Sbjct: 142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR-DVSKGRTTIVIAHRLS-TI 199
Query: 894 FESFDELFLMKRG 906
+ D++ ++K G
Sbjct: 200 VNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 33/217 (15%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQE 759
++L+ VS G +T+++G +GAGK+TL+ + R +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLL------YSAWLRLPPEVDSETQKMFIEEIMELVE 813
++S ++N I+S TV L+ YS RL E + I E +E +
Sbjct: 73 LAKKLSILKQENHINSRL-TV-RDLVGFGRFPYSQG-RLTKE-----DRRIINEAIEYLH 124
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L L + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 125 LEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 874 NTVDT-GRTVVCTIHQPSIDI-FESF--DELFLMKRG 906
D G+T+V +H DI F S D + +K G
Sbjct: 180 RLADELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 5e-13
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS------GY 767
RPG L+GV+GAGKTT +L G T +G+ T++G + T IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
C Q D +T E L A LR P E +K+ I L L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPA--EEIEKVANWSIQSL-GLSLYADRLAGT--- 2070
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 30/171 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ---- 758
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 759 ---ETFTRISGYCEQNDIHSPFVTVYESLL------YSAWLRLPPEVDSETQKMFIEEIM 809
F + + + +TV+E+L S + L + +E +K IEE++
Sbjct: 78 GIGRKFQKPTVF--------ENLTVFENLELALPRDKSVFASLFFRLSAE-EKDRIEEVL 128
Query: 810 ELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 129 ETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 30/215 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ-ET 760
L+ VS G + ++G SGAGK+TL+ ++ R T G + ++ + +
Sbjct: 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80
Query: 761 FTRISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ G Q N + S TV+E++ + P E+ + + + EL+EL
Sbjct: 81 LRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAGVPKAEIKQRVAELLEL---- 128
Query: 819 QSLVGLPG-----ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTV 872
VGL + LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ---VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLK 185
Query: 873 RNTVDTGRTVVCTIHQPSIDIFESF-DELFLMKRG 906
+ G T+V H+ +++ + D + ++ +G
Sbjct: 186 DINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 761
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 762 TRISGYCEQNDIHSPF--VTVYESLLY------SAWLRLPPEVDSETQKMFIEEIMELVE 813
R G + + F +TV E+L S + L + +E ++ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAE-ERRRIDELLATIG 136
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 26/200 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNITISGYP--KKQE 759
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+ITI +Q+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 760 TFTRI----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
R G+ QN P TV E+++ P V E ++ EL+
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL--- 129
Query: 816 PLRQSLVGLPGESG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ VGL G+ LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 ----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN 185
Query: 871 TVRNTVDTGRTVVCTIHQPS 890
T+R RT+V H+ S
Sbjct: 186 TIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 761
L G+S G + +G +GAGKTT + +L+G + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 762 TRISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
RI Q + V +S L +A LPP + ++E+ EL++L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKR----LDELSELLDLEELLDT 149
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 879
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 PV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 880 RTVVCTIH 887
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQND-IH 774
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 775 SPFVTVYESLL------YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
F + E ++ + WLR + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 720 ALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFTRISGYCEQNDIHSP 776
++G +G+GK+ L++ +AG + G I N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEE---IMELVELNPLRQSLVGLPGESGLSTE 833
+TVY+++ Y R + + E + + I E I L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 893
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 894 FESFDELFLMKRG 906
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+T L+G +GKTTLL LAG+ + + +G + NG +D+ QR+ Y+ Q DVH
Sbjct: 35 LTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLDKNF-QRSTGYVEQQDVHSP 92
Query: 61 EMTVRETLAFSARCQGVG 78
+TVRE L FSA +G+
Sbjct: 93 NLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 18/213 (8%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 761
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 762 TRISGYCEQNDIHSPFVTVYESLL--YSAW--LRLPPEVDSETQKMFIEEIMELVELNPL 817
+ + + F+ + LL ++A + +P + ++ K E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 874
+ P E LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRPSE--LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 875 TVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 5e-12
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 715 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQ-ETFTRISGYC 768
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
Q P ++V +L Y P E + F E ++EL+ + L L LPG
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSE----RRISF-ERVIELLGIGHL---LGRLPGR- 131
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 19/162 (11%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 759
K +N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRK 67
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+I E ++ +T E+L L P DS I+E++ +V+L +
Sbjct: 68 DLHKIGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTNTGK 119
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 120 KKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-12
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFT 762
L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ ETF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ GY Q D+ TV E++ R D E +I+E +L + + ++
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVHELIL 438
Query: 823 GLP---------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LP G + LS QR+R+ +A L +P ++ +DEP S LD + ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 874 NTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911
G TVV H+PS + D++ +++ G +
Sbjct: 499 ALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 8e-12
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
+N VS G + L+G +GAGKTT ++ G R G I + I+ P +
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 763 RISGYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSET--QKMFIEEIMELVELNPLR 818
I GY Q S F +TV ++++ +R E D + +K ++ ++E + LR
Sbjct: 80 GI-GYLPQE--ASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEFHITHLR 133
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 134 DS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188
Query: 879 GRTVVCTIH 887
G V+ T H
Sbjct: 189 GIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 8e-12
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 47/181 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 756 KKQETF---TRISGYCEQ--NDIHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
K + R+ G Q N PF ++Y+++ Y LRL D E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 810 ELVELNPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
E+VE + L++ L E GLS Q++RL IA L P ++ MDEPTS L
Sbjct: 124 EIVE-SSLKK--AALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 861 D 861
D
Sbjct: 181 D 181
|
Length = 253 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 9e-12
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 28/241 (11%)
Query: 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT 730
L S+ F+ V++S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 731 TLMDVLAGRKTGGYITGNITISGYPKKQETFT---RISGYCEQNDIHSPF-VTVYESLLY 786
TL+ +L +G I I G + + + G Q+ + F T+ E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL--FSGTIRENIAL 425
Query: 787 SAWLRLPPEVDSETQKMFIEE-IMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELV 845
E++ + E I L + ++VG LS QR+RL IA L+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIANLPDGY---DTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 846 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905
NP I+ +DE TS LD A++ ++ + GRT + H+ S ++ D + ++
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDN 538
Query: 906 G 906
G
Sbjct: 539 G 539
|
Length = 567 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNITISG---YPK 756
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 757 KQETF---TRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEE----- 807
+ +T I +Q + PF +++YE+++Y LRL D + +E+
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGA 132
Query: 808 -IMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
I + V+ + L S +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 133 SIWDEVK-DRLHDSALGLSGG------QQQRVCIARVLATSPKIILLDEPTSALDPISAG 185
Query: 867 IVMRTVRNTVD--TGRTVVCTIHQPS 890
+ T+ D T V ++ Q S
Sbjct: 186 KIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 64/232 (27%), Positives = 95/232 (40%), Gaps = 51/232 (21%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 759 ---ETFTRISGYCEQNDIHSP---FVTVYESLLYSAWLRLPPEVDSETQKMFIEE-IMEL 811
G Q P T+ E++ Y EV+ +K I + IM L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 812 VELNPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 ----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 871 TVRNTVDTGRTVVCTIHQPS-------IDIFE--------SFDELFLMKRGG 907
+ + GRT + H+ S I + + + DE LM + G
Sbjct: 181 AL-DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDE--LMAQKG 229
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 1e-11
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 14/187 (7%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK-KQETFT 762
+++N +S G L+G +GAGK+T+ +L G + G IT+ G P +
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 763 RIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R++ G Q D P TV E+LL + + + + + I ++E L
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADV 131
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
V L LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 132 RVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 881 TVVCTIH 887
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 759
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 760 TFT---RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
T R G Q D+ TV E++ Y P E E+ E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATRE-------EVEEAARAAN 116
Query: 817 LRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
+ ++ LP GE G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 868 VMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907
V + + RT H+ S E+ D + +++ G
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLS--TIENADRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 763 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ P TVYE++ LP V + + + E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALPSQ--LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 882 VVCTIH 887
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 730 TTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS----GYCEQNDIHSPFVTVYESLL 785
+TL+ ++ G +G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 786 YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELV 845
+ + EE +E V L LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARALL 106
Query: 846 ANPSIIFMDEPTS 858
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 14/211 (6%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFT 762
+L +S PG A++G +GAGKTTL+ +L G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 763 RISGYC--EQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ G E ++ TV + +L + A + + E + + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 876
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 877 DTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFTRI 764
L+GVS + G L+G SG GKTTL+ ++AG +T +G I + G R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRP 73
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
QN P +TV+E++ + LRL ++ K + E ++LV+L
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYANRKP-- 128
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 ---SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFT 762
L+ VS R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 763 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ P TVYE++ +R E + + + + + V L
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH---KA 131
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
P + LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 132 DAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 882 VVCTIHQPSI 891
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 28/226 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFTRI 764
L+ V G + AL+G SG+GK+TL+ L+G TG G +I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG--RL 77
Query: 765 SGYCEQNDIHSPFV----------TVYESLLYSA------WLRLPPEVDSETQKMFIEEI 808
+ ++ ++ ++ +V E++L A W R + QK +
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-RTCFSWFTREQKQRALQA 136
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+ V + V S LS Q++R+ IA L+ +I DEP + LD +A IV
Sbjct: 137 LTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 869 MRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913
M T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 192 MDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 760
L GVS G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 761 FTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNP 816
R Y + P +TV E+LL A+ R D E Q+ +EE+ EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKE 128
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 877 DTGRTVVCTIHQ 888
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVG 823
G QN+ P++ V +++ + LR ++ ++ +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSGG------MRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+LN +S + G +TAL+G +G GK+TL+ A T +G + + P + ++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 765 SGYCE---QNDIHSPFVTVYESLLY------SAWLRLPPEVDSETQKMFIEEIMELVELN 815
+ Q+ + +TV E + Y S W RL S + + ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRIN 129
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 876 VDTGRTVVCTIHQPSIDIFES---FDELFLMKRGG 907
G+TVV +H D+ ++ D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 24/203 (11%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---K 756
E +L +L GV + G A++G SG+GK+TL+ VLAG +G + + G P
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKL 77
Query: 757 KQETFTRIS----GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
++ + G+ Q+ P +T E++ LP E+ E+ L+
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALL 131
Query: 813 ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIV 868
E L + L P + LS +++R+ +A P ++F DEPT LD + A ++
Sbjct: 132 EAVGLGKRLTHYPAQ--LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 869 MRTVRNTVDTGRTVVCTIHQPSI 891
R + G T+V H P +
Sbjct: 190 FALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPLRQSL 821
G Q+ P +TV +++ Y + + M E+ E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 822 VGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 19/173 (10%)
Query: 696 QGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755
QG E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 756 -------KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
+ + + G+ Q+ + P + E++ A LR S
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGA------ 127
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLPAQ--LSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI-----SGYPKKQET 760
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 761 FTRIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 878
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 879 GRTVVCTIHQPSIDIFESFDELFLMKRG 906
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 40/217 (18%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-P-KKQETFTRISGYCEQ 770
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK----VRVNGKDPFRRREEYLRSIGLV-- 102
Query: 771 NDIHSPFVTVYESLLYSAW----------LRLPPEVDSETQKMFIEEIMELVELNP-LRQ 819
+ L W L+L E+ + ++ + E+++L L+
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 878
+ LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 PV------RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 879 GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915
TV+ T H DI D + L+ + GQ ++ G L
Sbjct: 207 QATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 24/164 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETF- 761
L+ VS + G + +G +GAGK+T M ++ G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 762 -TRISGYCEQNDIHSPF---VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R GY + H+P + V E L + A + + + K +EE++ELV L P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPE 126
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 62/224 (27%), Positives = 93/224 (41%), Gaps = 49/224 (21%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETF 761
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 762 TRIS---GYCEQNDIHSPFVTVYE------SLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
+ GY Q P +TV E LL W + E + +E++ LV
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALV 121
Query: 813 ELNPLRQSLVG-LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
L+P P E LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 122 GLDP--AEFADRYPHE--LSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRD 172
Query: 872 ------VRNTVDTGRTVVCTIHQPSIDIFESF---DELFLMKRG 906
R + G+T+V H DI E+F D + +MK G
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-11
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQETF 761
L + G A++G SG+GK+TL+ +LAG G+IT++G +Q
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALR 411
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQS 820
IS ++ + S T+ ++L + P+ E + ++ V L L +
Sbjct: 412 ETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESA 460
Query: 821 LVGLP---GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
GL GE G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 461 PDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520
Query: 876 VDTGRTVVCTIH 887
+ G+T++ H
Sbjct: 521 AE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-11
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 17/215 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISG---YPKKQ 758
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 759 ETFTRISG----YCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
+ +I G Q+ + S P +T+ + + L E ++ E++ELV
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER-AIELLELV 138
Query: 813 ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
+ + L P E LS R+R+ IA+ L NP ++ DEPT+ LD A ++ +
Sbjct: 139 GIPDPERRLKSYPHE--LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 873 RNTV-DTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ + G ++ H + + E D + +M G
Sbjct: 197 KELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-11
Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 23/210 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFT 762
L G+S A + G ++G SG+GK+TL +L G +G++ + G +Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLG 409
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIE-----EIMELVELNPL 817
R GY Q D+ T+ E++ R E D E IE + EL+ P
Sbjct: 410 RHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEK---VIEAARLAGVHELILRLPQ 460
Query: 818 -RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
+ +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 461 GYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519
Query: 877 DTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
G TVV H+PS S D++ +++ G
Sbjct: 520 ARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-11
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT---RISGYCE 769
G+ TAL G SG+GKT+L++++AG R G I N + +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 770 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829
Q+ P TV +L Y W + + D +++ L+ + L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMWKSMRAQFD---------QLVALLGIEHL---LDRYPGT-- 128
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-11
Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 31/222 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
++ V+ G L+G SG+GKTT + ++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 763 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVELNPLR 818
R GY Q P +TV E++ P+ D E K +E+++LV L+P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 875
+ P E LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYPHE--LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 876 VDTGRTVVCTIHQPSIDIFESF---DELFLMKRGGQEIYVGP 914
G+T+V H DI E+ D + +M G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 48/232 (20%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLDS-KLKFSGRVTYNGH-GMDEFVPQRTAAYISQHDV 57
T + G +GK+TLL +AG K D + +G V ++ ++ QR + Q
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ VRE LAF + + + EL
Sbjct: 86 LFPHLNVRENLAFGLKRKRNREDRISVDEL------------------------------ 115
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLD 176
L +LGL+ + + +SGG+K+RV + P L L +DE + LD
Sbjct: 116 ------LDLLGLDH-----LLNRYPAQLSGGEKQRVALARALAAQPEL-LLLDEPFSALD 163
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ Q++ ++Q LN VI + E L D I+++ D ++ Y G
Sbjct: 164 RALRLQLLPELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 1e-10
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 12/205 (5%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFTR 763
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+ R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
QN P + V +++ + + P+ D E + + ++L L +
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKAD------IAERVADALKLVGLGDAAAH 133
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRT 881
LP + LS ++R+ IA + P ++ +DEP S LDA A + + + T
Sbjct: 134 LPAQ--LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 882 VVCTIHQPSIDIFESFDELFLMKRG 906
++C H D D+ +MK G
Sbjct: 192 ILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 35/199 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY------PKKQE 759
L VS + G + ++G SGAGK+TL+ + G + +G++ + G K+
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELR 78
Query: 760 TFTRISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R G Q N + S TV+E++ P E+ + E ++EL+EL
Sbjct: 79 KARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLEL--- 127
Query: 818 RQSLVGL-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
VGL P + LS Q++R+ IA L NP ++ DE TS LD ++
Sbjct: 128 ----VGLEDKADAYPAQ--LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 871 TVRNT-VDTGRTVVCTIHQ 888
+R+ + G T+V H+
Sbjct: 182 LLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 46/186 (24%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 756 KKQETF---TRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL 811
KK + R+ G Q +PF +++Y+++ Y P + K ++EI+E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG------PRLHGIKDKKELDEIVE- 122
Query: 812 VELNPLRQSL--VGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
+SL L E GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 861 DARAAA 866
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-10
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 35/185 (18%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 763 RISG---YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE--TQKMFIEEIMELVELNPL 817
++ +Q DI TV ++L + W P+ D + I ++
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV--------- 597
Query: 818 RQSLVGLPG-------ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+ PG E G LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 598 ---ITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 869 MRTVR 873
+R
Sbjct: 655 DDNLR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 36/217 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G + F +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 766 GYCEQND--IH-----SPFVTVYESLLYSAWL-RLPPE---VDSETQKMFIEEIMELVEL 814
I+ P +TV E+L +L +LP + V+ E +E + +
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 815 N-----PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ PL+ LS QR+ + IA L N +I DEPTS L AR +
Sbjct: 131 DIDPDTPLKY----------LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF 180
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
R +R GR ++ H+ +IF D + + K G
Sbjct: 181 RVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
+ VS + + G + AL+G +GAGK+TLM +L G + G I + G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE------VR 69
Query: 764 ISGYCEQND--------IHSPFV-----TVYESLLYSAWLRLPPEVDSETQKMFIEEIME 810
I D +H F+ TV E+++ +D + I+E+ E
Sbjct: 70 IKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE 126
Query: 811 L--VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+ ++P + V LS +++R+ I L ++ +DEPT+ L + A +
Sbjct: 127 RYGLPVDP--DAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179
Query: 869 MRTVRNTVDTGRTVV 883
+R G+T++
Sbjct: 180 FEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 37/217 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G++ G + AL+G +GAGK+TL G + T +G + I G P K + +
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKYDKKSL 73
Query: 764 IS-----GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEVDSETQKMFIEEI----ME 810
+ G QN + +P TV E + + L L E E +K E + ME
Sbjct: 74 LEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE---EVEKRVKEALKAVGME 128
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
E P LS Q+KR+ IA L P II +DEPTSGLD A+ +M+
Sbjct: 129 GFENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK 178
Query: 871 TVRNTVDTGRTVVCTIHQPSIDIFESF-DELFLMKRG 906
+ + G T++ + H +D+ + D++++M G
Sbjct: 179 LLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISG-----YPKKQ 758
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
R G Q+ + P ++V ++LL++ LP + ++ +E L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+ LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 69/269 (25%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD--EFVPQRTAA--YISQHD 56
+ LLGP +GK+TLL +AG +GR+ NG + + R ++ QH
Sbjct: 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
MTV + +AF + + R EA I+ +
Sbjct: 87 ALFPHMTVADNIAFGLKVR------------KERPSEAEIRA--------RVEEL----- 121
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEI 171
L + + D +SGGQ++RV + ALA L +DE
Sbjct: 122 ------------LRLVQLEGLADRYPAQLSGGQRQRVA-----LARALAVEPKVLLLDEP 164
Query: 172 STGLDSSTTFQIVNSIRQ---NIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
LD ++ +R+ +H G + + E +L D +++L+ +I G
Sbjct: 165 FGALD----AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220
Query: 229 PRELVLDFFESMGFKCPERKGVADFLQEV 257
P + V D P + VA FL EV
Sbjct: 221 PPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 22/216 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVL--AGRKTGGYIT-GNITISGYPKK 757
+ VS PG + ++G SG+GK+T LM +L GR T G + + G ++
Sbjct: 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83
Query: 758 QET---FTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
+ RI Q+ + S P +T+ + + + L E +K E++E V
Sbjct: 84 EMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA-EARKR-AVELLEQV 140
Query: 813 EL-NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
L +P R+ P + LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 872 VRN-TVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+++ + G V+ H + + E D + +M +G
Sbjct: 197 LKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 758
D L +G+S G + G +G+GKTTL+ +LAG G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
++ R Y ++V E+L + + E +EE + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGLNGFE 119
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 879 GRTVVCTIHQP 889
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-10
Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 42/257 (16%)
Query: 663 QPKKRGMV-LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTAL 721
+P+ G+ LP ++TF+ + + D +L+ ++ +PG +
Sbjct: 440 EPRSAGLAALPELRGAITFENIRFRYA-----------PDSPEVLSNLNLDIKPGEFIGI 488
Query: 722 MGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFV 778
+G SG+GK+TL +L T + G + + G R G V
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIADPAWLRRQMG-----------V 535
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP-------GESG-- 829
+ E++L+S +R + E ++ +L + LP GE G
Sbjct: 536 VLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN 593
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R + GRTV+ H+
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICRGRTVIIIAHR- 651
Query: 890 SIDIFESFDELFLMKRG 906
+ + D + ++++G
Sbjct: 652 -LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPK--------K 757
VS PG + ++G SG+GKTTL+ ++GR T G +T G P+ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAE 82
Query: 758 QETFTRIS-GYCEQNDIH------SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIME 810
+ R G+ QN S + E L+ + R + +E Q +E
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEAQDW-----LE 136
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 137 EVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 871 TVRNTV-DTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907
+R V + G VV H ++ + D L +MK+G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI-S 201
RG+S Q+KR+T G + LF+DE ++GLDS + IV ++ + +G A++ +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILCT 164
Query: 202 LLQPAPETYDLFDDIILL-SDAQIVYQG 228
+ QP+ ++ FD ++LL + VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 50/246 (20%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQH- 55
LL+GP SGK+TLL L G L SG V +G ++ + Q+
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLL---KPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNP 88
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D + TV + +AF L L +E ++ E
Sbjct: 89 DDQLFGPTVEDEVAF------------GLENLGLPREE------------IEERVAE--- 121
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT-TGEMMVGPALALFMDEISTG 174
L+++GLE + L D +SGGQK+RV G + +GP + L +DE + G
Sbjct: 122 -------ALELVGLE---ELL--DRPPFNLSGGQKQRVAIAGVLAMGPEI-LLLDEPTAG 168
Query: 175 LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
LD +++ +++ + G +I + + D +++L D +I+ G +
Sbjct: 169 LDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 235 DFFESM 240
+ E +
Sbjct: 228 NDAELL 233
|
Length = 235 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 47/216 (21%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 765 SGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
DI + E ++ A+ PPE+ F+ + E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 882 VVCTIHQPSIDIFESFDELFLM------KRGGQEIY 911
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 4e-10
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 763 R--ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R ++ + + + + + +S LR ++E + ++E + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR-VDEALTLVDAQHFRHQ 132
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 PI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN 187
Query: 881 TVVCTIHQPSID-IFESFDELFLMKRG 906
V+ + H ID I+E D ++++++G
Sbjct: 188 HVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 708 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQE-- 759
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R G Q P ++V+++++ A L+L D + E + L +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTVRNTVD 877
+ P +GLS Q++RL IA L P I+ MDEPTS LD + A + + T V
Sbjct: 140 DRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198
Query: 878 TGRTVVCTIHQPS 890
T V +HQ +
Sbjct: 199 TIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-10
Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 31/181 (17%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
LL VS PG L+G +GAGK+TL+ +LAG +G +T K
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTR----PKGLRV--- 68
Query: 765 SGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL- 821
GY Q P TV + ++ + L E++ + + L EL L + L
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 822 --------------VGLPGE----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+G P E S LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 864 A 864
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 6e-10
Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 54/253 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHIGEM 62
LLGP GK+TLL +AG + SG + +G + + P+ R A + Q+ M
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHM 90
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
TV E +AF + +GV E+ +R KE
Sbjct: 91 TVYENIAFGLKLRGVPKA-----EIDKRVKEV---------------------------- 117
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
K+LGLE + + +SGGQ++RV +V +DE + LD+
Sbjct: 118 -AKLLGLE-----HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ + I + +H GT I + E L D I++++D +I G P EL
Sbjct: 172 MRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL--------- 221
Query: 242 FKCPERKGVADFL 254
++ P VA F+
Sbjct: 222 YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 27/209 (12%)
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS---GYCEQN---DI 773
A++G +GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833
SP TV + + + + +D ET + + ++ L LR + LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGG 141
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 892
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 893 IFESFDELFLMKRGG-------QEIYVGP 914
+ E D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 32/219 (14%)
Query: 707 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS- 765
VS PG + ++G SG+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 766 -----------GYCEQNDIH------SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
G+ QN S + E L+ + R + + Q
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNIRATAQDW----- 131
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+E VE++P R + LP S ++RL IA LV P ++FMDEPT GLD A +
Sbjct: 132 LEEVEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 869 MRTVRNTV-DTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ +R V D G V+ H + + L +M++G
Sbjct: 188 LDLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFT 762
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 763 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R Y Q P +TV E+LL + +EI EL P+ +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGL------AALPRRSRKIPDEIYELF---PVLK 122
Query: 820 SLVGLPGESG-LSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
++G G G LS Q+++L IA LV P ++ +DEPT G
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-10
Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 32/200 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ET 760
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL----NP 816
R GY Q D + T+ +++ A P D E EI+ EL
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDE-------EILRAAELAGVTEF 583
Query: 817 LRQSLVGLP---GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
+R+ GL GE G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 872 VRNTVDTGRTVVCTIHQPSI 891
++ + G+T+V H+ S+
Sbjct: 644 LKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQET--FTRISGYC 768
+ G TAL+G +G+GK+TL+ L G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPE--VDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
Q P ++E + P + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSPF 143
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
E LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 144 E--LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 887 HQPSIDIFESFDELFLMKRG 906
H D+ + D ++L+++G
Sbjct: 202 HLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 44/236 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHI 59
+ LLGP SGK+TLL +AG L+ SGR+ NG + R ++ QH
Sbjct: 28 LVALLGPSGSGKSTLLRIIAG-LEQPD--SGRIRLNGQDATRVHARDRKIGFVFQHYALF 84
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
+TVR+ +AF E+ + K +KA E
Sbjct: 85 KHLTVRDNIAFG-------------LEIRKHPKAK-----------IKARVEE------- 113
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
L+++ LE +GD +SGGQ++RV + L +DE LD+
Sbjct: 114 ---LLELVQLEG-----LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
++ + +R+ ++ T V + E ++ D I+++S+ +I G + V D
Sbjct: 166 RKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 28/196 (14%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
+L VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP------- 77
Query: 763 RISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
IS Y E +HS V E +L++ L+ + Q E + E + +
Sbjct: 78 -ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAHSFI 133
Query: 822 VGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
L GE G LS Q++R+ IA L+ NP ++ +DE TS LDA + V + +
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 873 RNTVDTGRTVVCTIHQ 888
+ RTV+ H+
Sbjct: 194 YDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF 761
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 762 TRISGYCEQNDIHSPFVTVYESLL------YSAWLRLPPEVDSETQKMFIEEIMELVELN 815
R Y Q + +TV E + + A R D E +EE + LV L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA-DREK----VEEAISLVGLK 138
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 874
PL LV LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 875 TVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914
+ + G TV+ +H I++ + + + RGG+ I G
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 24/214 (11%)
Query: 721 LMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837
+TV E++ + +R +V K + E + LV+L LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQR 108
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFES 896
+ +A LV P I+ +DEP S LD + + ++ + G T V H + S
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 897 FDELFLMKRG-------GQEIYVGPLGRHSCHLI 923
D + +M++G +EIY P I
Sbjct: 169 -DRIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 721 LMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETFTRISGYCEQNDIHSP 776
L+G SG GKTT + ++AG T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836
+TVY+++ + LR P+ + + + + E+ EL+++ L LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 837 RLTIAVELVANPSIIFMDEPTSGLDAR 863
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 18/210 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQET 760
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 761 FTRISGYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
R++ + + F V E R +ET + +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW--TETDRAAVERAMERTGVAQFA 133
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
V + LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 134 DRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 879 GRTVVCTIHQPSIDIFESF-DELFLMKRGG 907
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 26/208 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L ++ G L ++G SG GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
G QN+ P+ V +++ + L V+ + ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 881
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 882 VVCTIHQPSIDIFESF---DELFLMKRG 906
V+ H DI E+ EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 45/240 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ +LGP +GK+TLL AL+G+L SG VT NG ++ + P+ A H
Sbjct: 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELA-------RHRA 78
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+ +LAF Q V ++ R +G +P+ D + +A A T
Sbjct: 79 VLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAAQALA--------AT 123
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM------VGPALALFMDEISTG 174
D + GL D R +SGG+++RV ++ V LF+DE ++
Sbjct: 124 D----LSGLAGRD--------YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 175 LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
LD + + RQ G AV+++L D I+LL +++ G + VL
Sbjct: 172 LDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQETFT 762
LNG+S G A++G SGAGK+T++ +L +G+ITI G Q++
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQSLR 336
Query: 763 RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R G Q ND T+ ++ Y P+ +E + E +++
Sbjct: 337 RAIGIVPQDTVLFND------TIAYNIKYGR-----PDATAEE----VGAAAEAAQIHDF 381
Query: 818 RQSL-VGLP---GESGL--STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
QSL G GE GL S +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 382 IQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA 441
Query: 872 VRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRH 918
+R V GRT + H+ S I DE+ ++ G + G H
Sbjct: 442 LRE-VSAGRTTLVIAHRLSTII--DADEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---QETFT 762
L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G +
Sbjct: 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGLDVQAVR 526
Query: 763 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQKM--FIEEIMELVELNPLRQ 819
R G QN + S +++E++ A L + E +M E+I + P+
Sbjct: 527 RQLGVVLQNGRLMSG--SIFENIAGGA--PLTLDEAWEAARMAGLAEDIRAM----PMGM 578
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
V G LS QR+RL IA LV P I+ DE TS LD R AIV
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 46/217 (21%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 759
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG------ 63
Query: 760 TFTRISGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETQKMFI----------- 805
D+ + E L+ A+ + P E+ + F+
Sbjct: 64 -----------QDLLE--LEPDERARAGLFLAF-QYPEEIPGVSNLEFLRSALNARRSAR 109
Query: 806 -EEIMELVELNPLRQ---SLVGLPGE-------SGLSTEQRKRLTIAVELVANPSIIFMD 854
EE ++L++ L + +L+G+ E G S ++KR I + P + +D
Sbjct: 110 GEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD 169
Query: 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
E SGLD A IV + + R+ + H +
Sbjct: 170 EIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 24/193 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L G+ + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ G Q P +TV E++ + P +V ++ E +EL+E V
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEAEERALELLEK-------V 123
Query: 823 GL-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
GL P + LS Q++R+ IA L NP ++ DEPTS LD V+ +++
Sbjct: 124 GLADKADAYPAQ--LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181
Query: 876 VDTGRTVVCTIHQ 888
+ G T+V H+
Sbjct: 182 AEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP------KKQ 758
+L VS + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 759 ETFTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
F R Q+ + P +TV + + LR +D QK I E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+ LP + LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLPRQ--LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 23/202 (11%)
Query: 712 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFTRISGYCE 769
F G +TA++G SG+GK+TL++++AG +T +G + I+G +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 770 QNDIHSPFVTVYES--LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
+N++ +TV ++ L S L+L E + IE + V L L LPGE
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAE-----DRQAIEVALARVGLAGL---EKRLPGE 128
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRTVVC 884
LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+
Sbjct: 129 --LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLM 184
Query: 885 TIHQPSIDIFESFDELFLMKRG 906
HQP D + + G
Sbjct: 185 VTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 8e-09
Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 21/200 (10%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ---ETFTRISGYC 768
G AL+G SGAGKT+L++ L G ++ G++ I+G ++ E++ + +
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE- 827
QN P T+ +++L ++ + ++ E + L L Q L G+
Sbjct: 429 GQNP-QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPL-----LPQGLDTPIGDQ 482
Query: 828 -SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
+GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N +T +
Sbjct: 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVT 541
Query: 887 HQPSIDIFESFDELFLMKRG 906
HQ ++ +D++++M+ G
Sbjct: 542 HQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------KK 757
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
E + G+ Q P T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
P E LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRPSE--LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 53/241 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+T L+GP +GK+TLL A+ G L K SG + G + + + Y+ Q
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLL--KPS-SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88
Query: 61 E--MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+TV++ + G + L +++KE + A
Sbjct: 89 SFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEK-----------VDEA--------- 123
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
L+ +G+E D +G+ +SGGQK+RV + L +DE TG+D +
Sbjct: 124 -----LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 179 TTFQIVNSI----RQNIHILNGTAVISL-LQPAPETYDLFDDIILLSDAQIVYQGPRELV 233
+I + + ++ +L +++ L FD +I L+ ++ GP E V
Sbjct: 174 GQKEIYDLLKELRQEGKTVL----MVTHDLGLVM---AYFDRVICLNR-HLIASGPPEEV 225
Query: 234 L 234
L
Sbjct: 226 L 226
|
Length = 254 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQE 759
L G+ F +TAL+G SG GK+T + L G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 760 T--FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL--- 814
+ G Q PF ++YE+++Y LRL D +E ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 815 --NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+ L +S + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALSLSGG------QQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGN-ITISGYPKKQET 760
L GV+ + G +L+G SG GK+TL+++++G + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
F QN P++TV E+ + A R+ P++ ++ +EE + LV L ++
Sbjct: 60 F--------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEA 107
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
PG+ LS ++R+ IA L P ++ +DEP LDA
Sbjct: 108 ADKRPGQ--LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFTRISGYCEQN 771
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 772 DIHS-----PFVTVYESLLYS-----AWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
H P ++V +++ WLR P D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 882 VVCTIH 887
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-08
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 45/222 (20%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDV 57
L+GP +GK+TLL L G +D G + NG + + + A++ QH
Sbjct: 350 RVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHP- 405
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ T+ E + LAR + A+ E +EA
Sbjct: 406 FLFAGTIAENIR-----------------LARPD----------------ASDAEIREAL 432
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
V L DT +G+ G+SGGQ +R+ + A L +DE + LD+
Sbjct: 433 ERAGLDEFVAALPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 219
T +++ ++R + G V+ L+ L D I++L
Sbjct: 492 ETEAEVLEALRA---LAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 65/237 (27%), Positives = 92/237 (38%), Gaps = 60/237 (25%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH-DVHIGE- 61
LLG +GKTTLL +A L SG+VT +G R +++ + V GE
Sbjct: 33 LLGENGAGKTTLLRMIATLLIPD---SGKVTIDG-----VDTVRDPSFVRRKIGVLFGER 84
Query: 62 -----MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+T RE L + AR L L+R+E +A I K
Sbjct: 85 GLYARLTARENLKYFAR----------LNGLSRKEIKA------RIAELSKR-------- 120
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L L D VG S G K++V +V L +DE ++GLD
Sbjct: 121 ----------LQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165
Query: 177 SSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
T + + I+Q L G AVI E L D +I+L ++V +G E
Sbjct: 166 IRTRRKFHDFIKQ----LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218
|
Length = 245 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 38/170 (22%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 759
+ +LL +S G A++G +GAGK+TL+ +LAG + G ++G + + G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELGP-LSGTVKV-GETVK-- 386
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
GY +Q+ +T + E + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 820 SL--VGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L G GE LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G+S + G + ++G SG+GK+TL+ L G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
G Q P +TV E++ + P +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEK-------VG 125
Query: 824 LPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
L + + LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 879 GRTVVCTIHQ 888
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 50/219 (22%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 761
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA--------- 69
Query: 762 TRISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-L 817
Y Q P++ T+ E++L+ D E E++++ L P L
Sbjct: 70 -----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDL 110
Query: 818 RQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAI 867
LP GE G LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 111 EI----LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166
Query: 868 VMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ + +T + HQ + + D++ ++ G
Sbjct: 167 FENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 38/231 (16%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQ 758
E++L+ LN +S F + ++G SG+GK+TL+ G Y G I + Y +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 759 ETFTRISGYCEQNDIHS--------PFV-----------TVYESLLYSAWLRLPPEVDSE 799
+ + I + V T+ + +++ + +++
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 800 TQKMFIEEIMEL----VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855
F M L +E +P GLS Q++R+ IA L P I+ DE
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDE 202
Query: 856 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
PT+GLD + +M+ + + +TV H + E DE+ +M +G
Sbjct: 203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 2e-08
Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFTR 763
L G+S + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 764 ISGYCEQNDIHSPFVTVYESL-LYSAWLR------LPPEVDSETQKMFIEEIMELVELNP 816
I+ Y E + V + + L+SA LR P D + E+++ V L
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQVGLEK 457
Query: 817 LRQSLVGLP---GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
L + GL GE G LS +++RL IA L+ + ++ +DEPT GLDA ++
Sbjct: 458 LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL 517
Query: 872 VRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ +TV+ H+ + E FD + +M G
Sbjct: 518 LA-EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 60/217 (27%), Positives = 89/217 (41%), Gaps = 32/217 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFTR 763
L V+ PG + AL+G +GAGK+TLM VL+G G ITI+ Y K
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 764 ISG----YCEQNDIHSPFVTVYESLLYSAWLRLP-------PEVDSETQKMFIEEIMELV 812
G Y E + I +TV E+L R +D ++ ++ V
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 813 ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IVM 869
L V LS ++ L IA L+ + +I MDEPTS L + ++M
Sbjct: 134 GLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+R G +V H+ + +I D +MK G
Sbjct: 189 NQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGN-ITISGYPKKQETFTRISGYCEQND 772
G + A+MG SGAGK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVD-SETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831
+TV +++ L L P + + Q+ + + + V + L LP + LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADY---LDRLPEQ--LS 130
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 890
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 28/213 (13%)
Query: 712 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFTRISGYC 768
G + A++G SGAGK+TL++++AG +T G + + + P + + + +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML--FQ 78
Query: 769 EQNDIHSPFVTVYES--LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
E N +TV ++ L S L+L + Q+ +E V L L LPG
Sbjct: 79 ENNLF--AHLTVAQNIGLGLSPGLKL-----NAEQREKVEAAAAQVGLAGF---LKRLPG 128
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTV 882
E LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T+
Sbjct: 129 E--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTL 183
Query: 883 VCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915
+ H P D D + + G+ G
Sbjct: 184 LMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 32/181 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 756 KKQET--FTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
K + + G Q +PF +++E++ Y LR+ D+ + +EE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 813 EL-----NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSGG------QQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 868 V 868
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 42/191 (21%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVH 58
T L+G +GK+TLL L G L G + NG + + P ++ +++SQ+ +
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNP-Y 405
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+ T+RE + + ++E + AA +A
Sbjct: 406 LFAGTIRENILLA--------------RPDASDEE------------IIAAL---DQAG- 435
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
L ++ K GL DT++G E G+SGGQ +R+ ++ PA L +DE + LD+
Sbjct: 436 LLEFVPKPDGL----DTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 179 TTFQIVNSIRQ 189
T I+ ++++
Sbjct: 491 TEQIILQALQE 501
|
Length = 559 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 59/247 (23%), Positives = 86/247 (34%), Gaps = 70/247 (28%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ------RTAAYISQH 55
++GP SGK+TLL + G L SG V +G + R + Q
Sbjct: 29 LAIIGPSGSGKSTLLRLIVG-LLRPD--SGEVLIDGEDISGLSEAELYRLRRRMGMLFQS 85
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDID--VYMKAAATEG 113
+TV E +AF R E + +I V K
Sbjct: 86 GALFDSLTVFENVAFPLR-------------------EHTRLSEEEIREIVLEK------ 120
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-------- 165
L+ +GL +D + +SGG KKRV ALA
Sbjct: 121 ----------LEAVGLRGAEDLYPAE-----LSGGMKKRV---------ALARALALDPE 156
Query: 166 -LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224
L DE + GLD + I + IR ++ G I + + + D I +L D +I
Sbjct: 157 LLLYDEPTAGLDPIASGVIDDLIR-SLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
Query: 225 VYQGPRE 231
V +G E
Sbjct: 216 VAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 766 ---GYCEQNDIHSPFV-TVYESLLYSAW-LRL-PPEVDSETQKMFIEEIMELVELNPLRQ 819
G Q+ F TV++ + + + L EV+ EE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 880 RTVVCTIH 887
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 56/186 (30%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L ++ +TAL+G SG GK+T + D++ K I G + + G
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----- 69
Query: 759 ETFTRISGYCEQNDIHS-------------PF-VTVYESLLYSAWLRLPPEVDSETQKMF 804
I Y D++ PF +++Y+++ Y P K
Sbjct: 70 ---QDI--YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKK 118
Query: 805 IEEIMELVELNPLRQSLVGLPGES---------GLSTEQRKRLTIAVELVANPSIIFMDE 855
++EI+E L+ + L E GLS Q++RL IA L P ++ MDE
Sbjct: 119 LDEIVE----KSLKGA--ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 856 PTSGLD 861
PTS LD
Sbjct: 173 PTSALD 178
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 52/251 (20%)
Query: 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 736
S+ F+ V Y M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 737 AGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 796
+G ITI+GY T +G + V++
Sbjct: 54 NALLKPS--SGTITIAGY-----HITPETGNKNLKKLRKKVSLVFQF------------- 93
Query: 797 DSETQKMFIEEIMELVELNPLR----------QSL-----VGLPGESG------LSTEQR 835
E Q +F +++ VE P ++L VGL + LS Q
Sbjct: 94 -PEAQ-LFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQM 151
Query: 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 895
+R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D+ E
Sbjct: 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAE 210
Query: 896 SFDELFLMKRG 906
D++ +++ G
Sbjct: 211 YADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 6e-08
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNITISGYPKKQETF 761
L +S + +PG ++G +G+GK++L+ L R + G I + IS +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGL-HDLR 77
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPE---VDSETQKMFIEEIMELVELNP 816
+RIS Q + +L+S +R L P D E + + +E V L
Sbjct: 78 SRISI-IPQ-----------DPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGLKE 120
Query: 817 LRQSLVG------LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+SL G G LS QR+ L +A L+ I+ +DE T+ +D A++ +
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 871 TVRNTVDTGRTVVCTIH 887
T+R TV+ H
Sbjct: 181 TIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 32/179 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPKK 757
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 758 QETFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
R G Q +PF ++YE++ Y P + E K ++ I+E
Sbjct: 82 VVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE----KS 129
Query: 817 LRQSLVGLPGES---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
L+ + L E LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 130 LKGA--ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 8e-08
Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 50/232 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDV 57
LLGP GKTTLL +AG + D SG + +G + P +R + Q
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPD-----SGEILIDGRDVTGVPPERRNIGMVFQDYA 82
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+TV E +AF + +GV E+ R +E
Sbjct: 83 LFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------------------- 114
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLD 176
L+++GLE + + +SGGQ++RV + P+L L +DE + LD
Sbjct: 115 ------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL-LLLDEPLSALD 162
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ ++ +++ + G I + E L D I ++++ +IV G
Sbjct: 163 AKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETFTRIS-G 766
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 767 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
Q +PF +++YE++ Y LR D + +E + L + +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 A-FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 61/241 (25%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYIS---QHDVH 58
LLGP +GK+TL L ++ G+++ GH + P+ A + Q
Sbjct: 30 VALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAALARLGVVFQQPTL 85
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+++VR+ L + A G L+R E A I
Sbjct: 86 DLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------------------- 116
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDS 177
L LGL D+ VR ++GG ++RV ++ PAL L +DE + GLD
Sbjct: 117 -----LARLGL-----AERADDKVRELNGGHRRRVEIARALLHRPAL-LLLDEPTVGLDP 165
Query: 178 STTFQIVNSIR-----QNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRE 231
++ I +R Q + +L T ++ ++ D +++L +++ G E
Sbjct: 166 ASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAE 218
Query: 232 L 232
L
Sbjct: 219 L 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 9e-08
Identities = 72/237 (30%), Positives = 110/237 (46%), Gaps = 40/237 (16%)
Query: 693 MKLQGILEDK----LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--- 743
++L+GI DK + L+G + PG + AL+G +GAGK+T+M VL G + G
Sbjct: 5 LQLKGI--DKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL 62
Query: 744 YITGNITISGYPKKQETFTRISGYCEQNDIHS-----PFVTVYESLLY-----SAWLRLP 793
Y+ +T +G QE I IH P +T+ E++ + + R+
Sbjct: 63 YLGKEVTFNGPKSSQEAGIGI--------IHQELNLIPQLTIAENIFLGREFVNRFGRI- 113
Query: 794 PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853
+ +KM+ E L LN LR S L GE LS +++ + IA L +I M
Sbjct: 114 -----DWKKMYAEADKLLARLN-LRFSSDKLVGE--LSIGEQQMVEIAKVLSFESKVIIM 165
Query: 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910
DEPT L + R +R GR +V H+ +IFE D++ + R GQ I
Sbjct: 166 DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETF 761
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71
Query: 762 TRISGYCEQ 770
R GY Q
Sbjct: 72 RRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 49/199 (24%), Positives = 68/199 (34%), Gaps = 48/199 (24%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGE 61
+L GP SGKTTLL +AG L +G + +G +D+ Y+ +
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+TV E L F A G + DI AAA E L
Sbjct: 88 LTVAENLEFWAAFLG--------------------GEELDI-----AAALEAVGLAPLAH 122
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 181
L S GQK+RV ++V +DE + LD++
Sbjct: 123 LPFGYL------------------SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA 164
Query: 182 QIVNSIRQNIHILNGTAVI 200
IR H+ G VI
Sbjct: 165 LFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNITISGYP 755
+L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++T++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR 763
LL +S G L L G +GAGKTTL+ ++AG G I K++ T
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTY 72
Query: 764 ISGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
C ++ I +P++T+ E+ LY ++ + I E+ L L L
Sbjct: 73 QKQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDY 123
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 124 PCGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 881 TVVCTIHQ 888
V+ T HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 37/244 (15%)
Query: 677 SLTFDEVTYSVD--MPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 734
++ FD V+Y+ P E + ++ V+ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 735 VLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVY---ESLLYSA 788
+ + T G +T +ITI+ K ++ + R + V+ ES L+
Sbjct: 52 NINALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFED 101
Query: 789 WLRLPPEVDSETQKMFIEEIME-----LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVE 843
+ + KM ++E+ L++L R + P + +S Q +++ I
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ--MSGGQMRKIAIVSI 159
Query: 844 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFESFDELFL 902
L NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +
Sbjct: 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIV 218
Query: 903 MKRG 906
MK G
Sbjct: 219 MKEG 222
|
Length = 286 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 61/236 (25%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
++GP SGK+T LL + G LD SG V +G + + + AA+ + HIG
Sbjct: 32 FVAIVGPSGSGKST-LLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRR---HIG 85
Query: 61 ----------EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAA 110
++T E + GV + E R +E
Sbjct: 86 FVFQSFNLLPDLTALENVELPLLLAGVPKK-----ERRERAEEL---------------- 124
Query: 111 TEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMD 169
L+ +GL D L + +SGGQ++RV + P + + D
Sbjct: 125 -------------LERVGLG---DRL--NHYPSELSGGQQQRVAIARALANDPKI-ILAD 165
Query: 170 EISTG-LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224
E TG LDS T +++ +R+ ++ GT ++ ++ PE + D II L D +I
Sbjct: 166 E-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 44/202 (21%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNG---HGMDEFVPQRTAAYISQHDVH 58
+LGP SGK+TLL LAG LD G VT +G +D+ +R + +Q D H
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQ-DAH 419
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+ + TVRE L + + ++ L R G+ A
Sbjct: 420 LFDTTVRENLRLAR---PDATDEELWAALER----VGLADWL--------RALPD----- 459
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
GL DT++G E +SGG+++R+ ++ A L +DE + LD+
Sbjct: 460 ---------GL----DTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 179 TTFQIVNSIRQNIHILNGTAVI 200
T +++ + L+G V+
Sbjct: 506 TADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 60/253 (23%), Positives = 93/253 (36%), Gaps = 81/253 (32%)
Query: 10 SGKTTLLLALAGKLDSKLK-FSGRVTYNG---HGMDE------------FVPQRTAAYIS 53
SGK+TL LAL G L + SG V +G G+ E + Q ++
Sbjct: 46 SGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105
Query: 54 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
MT+ D + E R +
Sbjct: 106 ------PVMTIG----------------DQIREALRLHGKG-----------------SR 126
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFM 168
EA L+ +GL D D +SGG ++RV M+ ALA L
Sbjct: 127 AEARKRAVELLEQVGLP---DPERRDRYPHQLSGGMRQRV-----MIAMALALKPKLLIA 178
Query: 169 DEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDA 222
DE +T LD +T QI++ ++ ++ G AV+ + T+DL D ++++
Sbjct: 179 DEPTTALDVTTQAQILDLLK-DLQRELGMAVLFI------THDLGVVAELADRVVVMYKG 231
Query: 223 QIVYQGPRELVLD 235
+IV GP E +L
Sbjct: 232 EIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-07
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 27/213 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NITISGYPKK 757
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
+E + G Q P +T+ ++ L + +K E+ +EL++L L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKLVGL 119
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 877
+ P E LS ++R+ +A L A P I+ MDE S LD + ++
Sbjct: 120 EEYEHRYPDE--LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 878 T-GRTVVCTIHQPSIDIFESF---DELFLMKRG 906
T +T+V H D+ E+ D + +MK G
Sbjct: 178 TLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 57/220 (25%), Positives = 86/220 (39%), Gaps = 42/220 (19%)
Query: 695 LQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG- 753
L +EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 7 LHVSVEDK-AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 65
Query: 754 --------------------YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP 793
YP I G Q + + V R
Sbjct: 66 DLLELSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQ 112
Query: 794 PEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSII 851
+D + +EE + L+++ L +S+ G S ++KR I V P +
Sbjct: 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSV-----NVGFSGGEKKRNDILQMAVLEPELC 167
Query: 852 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
+DE SGLD A IV V + D R+ + H I
Sbjct: 168 ILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP------KK 757
LN VS + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 758 QETFTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
++ F R Q+ I + P TV E + LR +D + E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L P + LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPPQ--LSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 29/180 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT---GNITISGYPKKQET 760
LNG+S G ++G +GAGK+TL++ +AG T G I ++T K+
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 761 FTRI-----SGYCEQNDIHSPFVTVYESLLYSAWLR-----LPPEVDSETQKMFIEEIME 810
R+ +G P +T+ E+L A R L ++ + F E +
Sbjct: 82 LARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 811 LVE-LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
L L +GL LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 134 LGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 49/230 (21%), Positives = 88/230 (38%), Gaps = 71/230 (30%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L + + VL + GVSG+GK+TL+ G Y +G + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKF------- 57
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSL 821
S + +FI+++ L+++ L Q L
Sbjct: 58 --------------------------------SRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 880 RTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP-LGRHSCHLIRYFEG 928
TV+ H D+ S D + I GP G+ ++ F G
Sbjct: 140 NTVILIEHNL--DVLSSADWI---------IDFGPGSGKSGGKVV--FSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 21/212 (9%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL--- 459
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
+ Q + P T+ E+L Y P+ + ++ V L L + L
Sbjct: 460 --FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDEE 509
Query: 825 -PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
+ LS +++RL A L+ P +F+DE TS LD + + ++ + TV+
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVI 568
Query: 884 CTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915
H+P++ F S +L L+ G + P
Sbjct: 569 SVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 50/181 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH----GMDEFVPQRTAAYISQHD 56
M LLGP +GKTTL+ LA SG + +G + +R Y+ Q
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL--RRRIGYLPQEF 81
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
TVRE L + A +G+ S+ +
Sbjct: 82 GVYPNFTVREFLDYIAWLKGIPSK--------EVKARV---------------------- 111
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGL 175
D L+++ L + + +SGG ++RV + +VG P++ L +DE + GL
Sbjct: 112 ----DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQALVGDPSI-LIVDEPTAGL 161
Query: 176 D 176
D
Sbjct: 162 D 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 74/243 (30%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA-------YIS 53
++GP SGK+T LL L G LD SG V NG + + + A ++
Sbjct: 33 FVAIVGPSGSGKST-LLNLLGGLDKPT--SGEVLINGKDLTKLSEKELAKLRRKKIGFVF 89
Query: 54 Q-HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATE 112
Q ++ + ++TV E + G A R K A
Sbjct: 90 QNFNL-LPDLTVLENVELPLLIAGK---------SAGRRKRA------------------ 121
Query: 113 GQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LF 167
+ L+VLGLE + + +SGGQ++RV + AL +
Sbjct: 122 -------AEELLEVLGLE----DRLLKKKPSELSGGQQQRV-----AIARALINNPKIIL 165
Query: 168 MDEISTG-LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL-----FDDIILLSD 221
DE TG LDS T +++ +R+ T ++ T+D D +I L D
Sbjct: 166 ADEP-TGNLDSKTAKEVLELLRELNKERGKTIIMV-------THDPELAKYADRVIELKD 217
Query: 222 AQI 224
+I
Sbjct: 218 GKI 220
|
Length = 226 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-07
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 52/200 (26%)
Query: 2 TLLLGPPCSGKTTLLLALAGKL--DSKLKFSGRVTYNGH---GMDEFVPQRTAAYIS--- 53
L+GP +GKTTL ++G L SG V ++G G+ + I
Sbjct: 29 HGLIGPNGAGKTTLFNLISGFLRPT-----SGSVLFDGEDITGLPPH--EIARLGIGRTF 81
Query: 54 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
Q E+TV E + +A+ + + +L ARRE+ + A E
Sbjct: 82 QIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE-----------ARERAEE- 126
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE----MMVGPALALFMD 169
L+ +GL D + D +S GQ++R+ E + P L L +D
Sbjct: 127 ---------LLERVGL---AD--LADRPAGELSYGQQRRL---EIARALATDPKL-LLLD 168
Query: 170 EISTGLDSSTTFQIVNSIRQ 189
E + GL+ T ++ IR+
Sbjct: 169 EPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 57/232 (24%), Positives = 84/232 (36%), Gaps = 46/232 (19%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGM--DEFVPQRTAAYISQHDVHIGE 61
LLGP +GKTT + L L SGR T GH + + +R + Q E
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+T E L AR GV E R E
Sbjct: 88 LTGWENLYIHARLYGVPGA-----ERRERIDEL--------------------------- 115
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 181
L +GL D +V+ SGG ++R+ +V LF+DE + GLD T
Sbjct: 116 --LDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRA 168
Query: 182 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL 232
+ I + + G ++ E L D + ++ +I+ +G P EL
Sbjct: 169 HVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 713 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FTRIS-GYC 768
F +TA +G +GAGKTT + +L G +G + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
Q++I +TV E +L+ A L+ E ++ +E ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 885
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 886 IHQ 888
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 50/235 (21%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 757
+ L VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 758 QETFTRIS---GYCEQN-DIHSPFV--TVYESLLYSAWL---RLPPE-----VDSETQKM 803
+E I G QN D + F+ TV + + + L ++PP+ +D +K+
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFG--LENKKVPPKKMKDIIDDLAKKV 130
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+E+ ++ N LS Q++R+ IA L NP II DE TS LD +
Sbjct: 131 GMEDYLDKEPQN--------------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 864 AAAIV---MRTVRNTVDTGRTVVCTIHQPSIDIFESF--DELFLMKRGGQEIYVG 913
+ M +R T +T++ H D+ E+ D++ + G+ I G
Sbjct: 177 GKREIKKIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 31/183 (16%)
Query: 696 QGILE---DKLMLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGN 748
+GIL+ D +++ +S RPG L+G SG+GK+T L+ ++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 749 ITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESL--------LYSAWLRL-PPEVDSE 799
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 800 TQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858
++ + +ME V L+P R P E S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---PAE--FSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 859 GLD 861
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 40/184 (21%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ R+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 765 SG--YCEQNDIHS--------------------PFVTVYESLLYSAWLRLPPEVDSETQK 802
SG Y + DI P ++++E++ L + E Q+
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 803 MFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+ +E +L + + P LS Q++RL IA L P ++ DEPT+ LD
Sbjct: 122 R-VRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
Query: 863 RAAA 866
A
Sbjct: 180 ENTA 183
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 44/162 (27%), Positives = 60/162 (37%), Gaps = 53/162 (32%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
++GVS + + G L+G SG GK+TL ++ G T G I G K T
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---KDITKLS 81
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP---LRQS 820
E ++ + E++E V L R
Sbjct: 82 ---------------------------------KEERRER-VLELLEKVGLPEEFLYRY- 106
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
P E LS QR+R+ IA L NP +I DEP S LD
Sbjct: 107 ----PHE--LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 27/223 (12%)
Query: 693 MKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 752
M+L + E + +SG R G + L+G +GAGK+TL+ +AG +G +G+I +
Sbjct: 4 MQLNDVAESTRLG--PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 753 GYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
G P + R Y Q +P W L +T+ + ++
Sbjct: 59 GQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVA 110
Query: 810 ELVEL-NPLRQSLVGLPGESGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 863
+ L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ + R + G +V + H + +L+KRG
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 40/166 (24%)
Query: 718 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNITISGYPKKQETFTRISGY 767
+TA++G SG GK+T +++++ KT G Y NI Y +E T +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 768 CEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP- 825
++ + PF ++Y+++ Y P++ K ++EI+E +SL G
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAI 153
Query: 826 ----------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 43/180 (23%), Positives = 62/180 (34%), Gaps = 55/180 (30%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH-DVHIG 60
L G +GKTTL LAG + SG + NG + +++ Y+ Q D +
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+VRE L + A Q VL
Sbjct: 86 TDSVREELLLGL---------------------------------KELDAGNEQAETVLK 112
Query: 121 D---YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLD 176
D Y LK + +SGGQK+R+ ++ G L L DE ++GLD
Sbjct: 113 DLDLYALK-------------ERHPLSLSGGQKQRLAIAAALLSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 53/242 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNG---HGMDEFVPQRTAAYISQHDV 57
+T LLGP SGK+TLL LAG L +G V G HG+ R A + Q
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+TVR+ +A L + R AG D D
Sbjct: 86 TAVPLTVRDVVA--------------LGRIPHRSLWAG---DSPHDA------------- 115
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEIS 172
+ D L L + + D + +SGG+++RV V ALA L +DE +
Sbjct: 116 AVVDRALARTEL-----SHLADRDMSTLSGGERQRVH-----VARALAQEPKLLLLDEPT 165
Query: 173 TGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232
LD + + +R+ G V++ L D +++L ++V GP
Sbjct: 166 NHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPRE 223
Query: 233 VL 234
VL
Sbjct: 224 VL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 61/262 (23%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA---YIS-QHDVHI 59
++GP SGK+TL +AG ++ SG + + G + E P A +++ Q+ I
Sbjct: 31 IMGPNGSGKSTLSKTIAGHPSYEVT-SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
++ E L + ARR + +D + +
Sbjct: 90 PGVSNLEFLRSALN--------------ARRSARG----EEPLD--LLDFLKLLKAK--- 126
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSS 178
L +LG+ D+ + + G SGG+KKR +M + P LA+ +DEI +GLD
Sbjct: 127 ----LALLGM---DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAI-LDEIDSGLDID 178
Query: 179 TT---FQIVNSIRQN----IHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
+ +N +R+ + I + +++ ++P D + +L D +IV G E
Sbjct: 179 ALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP--------DYVHVLLDGRIVKSGDVE 230
Query: 232 LVLDFFESMGFKCPERKGVADF 253
L + E KG
Sbjct: 231 LAKEL---------EEKGYDWV 243
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 39/183 (21%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 758
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 759 ------ETFTRISGYCEQNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETQ 801
TF + + E +TV E+LL +S L+ P +E++
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 802 KM-FIEEIMELVELNPL--RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858
+ +E V L RQ+ L+ Q++RL IA +V P I+ +DEP +
Sbjct: 130 ALDRAATWLERVGLLEHANRQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAA 182
Query: 859 GLD 861
GL+
Sbjct: 183 GLN 185
|
Length = 255 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 43/187 (22%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L V +TA +G SG GK+T + D + G + +TG IT+ G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 756 KKQ---ETFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDS-ETQKMFIEEIME 810
+ E R+ G Q +PF ++YE++ Y P + K ++EI+E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 811 LVELNPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LR++ GL E +GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 862 ARAAAIV 868
A A V
Sbjct: 196 PIATAKV 202
|
Length = 267 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITISG---YPKKQ 758
L+G+S F LTAL+G SG GK+T + L R ITG I G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 759 E--TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+ + G Q PF +VY+++ Y L++ D E +EE
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEE--------S 127
Query: 817 LRQSLVGLPGESGL-------STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
L+Q+ + + L S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 128 LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187
Query: 870 RTV 872
T+
Sbjct: 188 ETL 190
|
Length = 251 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 759 ETFT-----RISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIME-- 810
F R G Q +PF+ ++Y+++ Y P++ K ++EI+E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 811 LVE---LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
L + N ++ L LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 131 LKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 868 VMRTVRNTVDTGRTVVCT 885
+ + N ++ ++ T
Sbjct: 189 IEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 37/226 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 764 ISGYCEQNDI---HSPFVTVYE-SLLYSAWL-RLPPE---VD-----SETQKMFIEEIME 810
S +N I H V + S++ + WL R P + VD +T+ +F E
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF----DE 121
Query: 811 L-VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
L ++++P R + + LS Q + + IA N I+ MDEPTS L + +
Sbjct: 122 LDIDIDP-RAKV------ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 174
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915
+R + G +V H+ +IF+ DE+ ++ R GQ I PL
Sbjct: 175 TIIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 764 ISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ + +H V E +L+S +R + EEIM + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 823 GLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
P GE G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 874 NTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ RTV+ H+ S E D++ ++K+G
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 26/191 (13%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDI 773
R G + L+G +G GK+T + +LAG+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 774 HSPFVTVYESLLYSAWL-----RLPPEVDSET--------QKMFIEEIMELVELNPLRQS 820
+ F + E + +P V + ++ ++E+++ +EL +
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 NI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 881 TVVCTIHQPSI 891
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 49/252 (19%)
Query: 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 738
FD+V++S D QG+ VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 739 RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLY----SAWLRL-- 792
++ +G I I G T I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 793 PPEVDSETQKMF-IEEIMELVELNPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSI 850
P D E + + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ-LSGGERQRLAIARALLKDPPI 492
Query: 851 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-------IDIFE-------- 895
+ +DE TS LD A V + + + GRT H+ S I +F+
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 896 SFDELFLMKRGG 907
SFDE L+ RGG
Sbjct: 552 SFDE--LVARGG 561
|
Length = 588 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 82/250 (32%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDE-----------FVPQRTA 49
L+G SGK+TL A+ G L SG + ++G + V Q
Sbjct: 36 LVGESGSGKSTLARAILG-LLKP--TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQ--D 90
Query: 50 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAA 109
S + MT+ E +A R G S+ + + A G+ +
Sbjct: 91 PMSSLNPR----MTIGEQIAEPLRIHGKLSKKEAR-KEAVLLLLVGVGLPEE-------- 137
Query: 110 ATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---- 165
VL Y +SGGQ++RV + ALA
Sbjct: 138 --------VLNRY-------------------PHELSGGQRQRV-----AIARALALNPK 165
Query: 166 -LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDDIIL 218
L DE ++ LD S QI++ +++ + G ++ ++ + D + +
Sbjct: 166 LLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFITHDLGVVA------KIADRVAV 218
Query: 219 LSDAQIVYQG 228
+ +IV +G
Sbjct: 219 MYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 721 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-ITISGYPKKQE--TFTRISGYCEQNDI 773
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833
P +TV E+L+ + P V ++ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH--LSGG 145
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 47/221 (21%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L VS + G A++G +G+GK+TL +L G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 764 IS---GYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
+ G QN P FV TV + + + E + EE++E V+
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL----------ENIGVPREEMVERVD-Q 123
Query: 816 PLRQSLVGL-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
LRQ VG+ P LS Q++R+ IA L P II +DE TS LD R V
Sbjct: 124 ALRQ--VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
Query: 869 MRTVRNTVDTGR-TVVCTIHQPSIDIFE--SFDELFLMKRG 906
+ TVR + TV+ H D+ E D + +M +G
Sbjct: 180 LETVRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ--ET 760
+N S G + +MG+SG+GK+TL+ +L T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
+ Q+ P TV E++ + ++ P+ + E + E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER---ALEALELVGLEGYADK 160
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
P E LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 Y---PNE--LSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 44/178 (24%), Positives = 62/178 (34%), Gaps = 47/178 (26%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVH 58
+ GP +GKTTLL LAG L +G V + G + + Y+
Sbjct: 30 ALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
E+T E L F R G G+ + E A A
Sbjct: 87 KTELTALENLHFWQRFHGSGNA-ATIWE---------------------ALA-------- 116
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
+ + GLE D V +S GQ++RV + + PA +DE T LD
Sbjct: 117 ----QVGLAGLE--------DLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 141 MVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAV 199
V +SGGQ++RV ++ P L L +DE ++GLD ++ +++ +R+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 200 ISLLQPAPETYDLFDDIILLSDAQ 223
I + D +I+L D +
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 53/243 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTA----AYISQ 54
L+GP +GK+TLL L G ++ SG V +G +++ + R I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI-KPDPDIDVYMKAAATEG 113
I ++V E + L RR + P + AA E
Sbjct: 86 QFNLIERLSVLENVLSGR--------------LGRRSTWRSLFGLFPKEEKQRALAALE- 130
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMDEIS 172
+L Y + D L SGGQ++RV +M P L L DE
Sbjct: 131 -RVGLLDKAYQRA-------DQL---------SGGQQQRVAIARALMQQPKLIL-ADEPV 172
Query: 173 TGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL----FDDIILLSDAQIVYQG 228
LD +++ Q+++ +++ T ++SL Q DL D I+ L D +IV+ G
Sbjct: 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLAREYADRIVGLKDGRIVFDG 227
Query: 229 PRE 231
P
Sbjct: 228 PPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 57/234 (24%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIG 60
++G SGK+TLL LAG SG V +G + + P R Y+ Q DV +
Sbjct: 35 IIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLF 90
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
T+R+ + A P D + ++AA G +T
Sbjct: 91 YGTLRDNITLGA-------------------------PLADDERILRAAELAG-----VT 120
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
D+ V D +G E RG+SGGQ++ V ++ L +DE ++ +D ++
Sbjct: 121 DF---VNKHPNGLDLQIG-ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 181 FQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDDIILLSDAQIVYQG 228
++ +RQ +L +I SLL DL D II++ +IV G
Sbjct: 177 ERLKERLRQ---LLGDKTLIIITHRPSLL-------DLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 52/252 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHIGEM 62
+LGP SGK+ LL +AG + SG++ NG + P+ R +Y+ Q+ M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
TV + +A+ G+ R E+ R+ E
Sbjct: 87 TVYKNIAY-----GLKKRKVDKKEIERKVLEIA--------------------------- 114
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
++LG+ D L+ + +SGG+++RV +V L +DE + LD T +
Sbjct: 115 --EMLGI----DHLL-NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGF 242
+ +++ I G V+ + E + L D + ++ + +++ G E V F
Sbjct: 168 LREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV--------F 218
Query: 243 KCPERKGVADFL 254
K P+ + VA+FL
Sbjct: 219 KKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 61/259 (23%), Positives = 92/259 (35%), Gaps = 60/259 (23%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHIG 60
LLGP GKTTLL LAG + D SG + +G + P R + Q
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD-----SGSIMLDGEDVTNVPPHLRHINMVFQSYALFP 55
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV E +AF + + V E+ R EA
Sbjct: 56 HMTVEENVAFGLKMRKVPR-----AEIKPRVLEA-------------------------- 84
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSST 179
L + D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 --------LRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKL 135
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFE 238
Q+ ++ L G + + E + D I ++ +I G P E+
Sbjct: 136 RDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI------ 188
Query: 239 SMGFKCPERKGVADFLQEV 257
++ P VA F+ E+
Sbjct: 189 ---YEEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 145 ISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLL 203
+SGGQK+RV G + V P + + +DE ++ LD + QI+ IR+ + N VIS+
Sbjct: 144 LSGGQKQRVAIAGILAVEPKI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISIT 201
Query: 204 QPAPETYDLFDDIILLSDAQIVYQG-PREL 232
E ++ D +++L D +++ QG P E+
Sbjct: 202 HDIDEA-NMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 1e-06
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 890 SIDIFESFDELFLMKRG 906
++FE D + +++ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 25/223 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TG----NITISGYPK 756
++ VS + G + ++G SGAGKTTL ++AG T G + G ++T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+ R G Q P TV ++L + L LP E+ K I M +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
+ L P E LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYPDE--LSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 877 -----DTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914
+ +T + H + + D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 718 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQETFT--RISGYCE 769
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 770 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV--------EL-NPLRQ 819
Q +PF +++Y+++ Y P + K +++I+E E+ + L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSGG------QQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 16/210 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNITISGYPKKQET 760
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 761 F-TRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 876
+ L P + LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYPFQ--LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 877 DTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
G ++ H + + DE+ +M G
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGNITISG---YPKKQETF 761
V+ P +TA +G SG GK+T++ L R G + G + + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 762 T--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLR 818
R G Q P +++ ++++ A L+L + + +E+ + L N ++
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 140 DRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQET 760
+LN +S + R G A+ G SG GK+TL+ ++A T G + G +S K E
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DVSTL--KPEA 74
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
+ + YC Q TV ++L++ +R + + +++ L P
Sbjct: 75 YRQQVSYCAQTPALFG-DTVEDNLIFPWQIR-----NRRPDRAAALDLLARFAL-PDSI- 126
Query: 821 LVGLPGE-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRTVRNT 875
L + LS +++R+ + L P I+ +DE TS LD ++ R VR
Sbjct: 127 ---LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR-- 181
Query: 876 VDTGRTVVCTIHQP 889
+ V+ H
Sbjct: 182 -EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 54/232 (23%)
Query: 683 VTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 742
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 743 GYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPP 794
G I I G + P + SL L+S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
+ E EEI + ++ G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSD---EEIYGALRVSE---------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
E T+ +D A++ +T+R T T++ H+ I +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTII--DYDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 53/239 (22%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIG 60
++G SGK+TLL L G G V +G + + P +R Y+ Q D +
Sbjct: 496 IIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLF 551
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
T+R+ +A A P D + ++AA G +T
Sbjct: 552 YGTLRDNIALGA-------------------------PYADDEEILRAAELAG-----VT 581
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSST 179
++ V D +G E R +SGGQ++ V ++ P + L +DE ++ +D+ +
Sbjct: 582 EF---VRRHPDGLDMQIG-ERGRSLSGGQRQAVALARALLRDPPI-LLLDEPTSAMDNRS 636
Query: 180 TFQIVNSIRQNIH---ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+ + +++ + ++ T SLL DL D II++ + +IV GP++ VL+
Sbjct: 637 EERFKDRLKRWLAGKTLVLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 48/225 (21%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIG 60
LLGP GKTT L +AG + S GR+ G + + P R A + Q+
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTS-----GRIYIGGRDVTDLPPKDRDIAMVFQNYALYP 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV + +AF + + V P +ID ++ A
Sbjct: 86 HMTVYDNIAFGLKLRKV--------------------PKDEIDERVREVA---------- 115
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
++L +E + D + +SGGQ++RV G +V MDE + LD+
Sbjct: 116 ----ELLQIEH-----LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225
Q+ ++ + GT I + E + D I +++D QI
Sbjct: 167 VQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 59/249 (23%), Positives = 95/249 (38%), Gaps = 103/249 (41%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ ++GP SGK++LL AL G+L+ K SG V+ G + AY+SQ
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG----------SIAYVSQ------ 73
Query: 61 E-----MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP---DPDIDVYMKAAATE 112
E T+RE + F G +D R ++ IK +PD+++
Sbjct: 74 EPWIQNGTIRENILF-------GKPFDE-----ERYEKV-IKACALEPDLEI-------- 112
Query: 113 GQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALA----- 165
L D T +G+ +GI SGGQK+R+ +LA
Sbjct: 113 ----------------LPDGDLTEIGE---KGINLSGGQKQRI---------SLARAVYS 144
Query: 166 ----LFMDEISTGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPETYDLFD 214
+D+ + +D+ I + I +LN I LL A D
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHIFENCILG--LLLNNKTRILVTHQLQLLPHA-------D 195
Query: 215 DIILLSDAQ 223
I++L + +
Sbjct: 196 QIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 746
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 29/183 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 766 GYCEQND---IHS-----PFVTVYESL-LYSAWLRLP----PEVDSETQKMFIEEIMELV 812
E+ IH ++V E++ L + + QK+ ++ +
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLL-AQLK--L 133
Query: 813 ELNPLRQSLVGLP-GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
++NP P G GL +Q + IA L ++ +DEPT+ L A+++
Sbjct: 134 DINP------ATPVGNLGLGQQQ--LVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 872 VRN 874
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 2e-06
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPK 756
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
E F R G Q P + L +L P E + + + E+ +
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 877 DTGRTVVCT 885
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISG---YPKKQE--T 760
VS F +TA++G SG GK+T+ ++ + +TG I + Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQ 819
R G Q P +++Y++++ A +L V+ +E ++ V L + ++
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L E LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKSNAME--LSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 48/202 (23%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L +S + G AL+G SG+GK+TL+ +L G G IT+ G P
Sbjct: 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP---------- 65
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
V+ E L S L +F + N +G
Sbjct: 66 ------------VSDLEKALSSLISVLNQRP-----YLFDTTLRN----N------LGRR 98
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV-C 884
S +R+RL +A L+ + I+ +DEPT GLD ++ + V +T++
Sbjct: 99 ----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWI 153
Query: 885 TIHQPSIDIFESFDELFLMKRG 906
T H I E D++ ++ G
Sbjct: 154 THHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 757
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 758 QETFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
R G Q +PF +++E++ Y LR V+ K ++ E +E
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LR----VNGVKDKAYLAERVE------ 127
Query: 817 LRQSLVGLP---------GES--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
+SL ES GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 128 --RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 866 A 866
Sbjct: 186 Q 186
|
Length = 253 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 693 MKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 752
M+L + L +S R G + L+G +GAGK+TL+ +AG G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 753 G-----YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEE 807
G + R Y Q + V++ L L P + +E + E
Sbjct: 56 GQPLEAWS--AAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNE 109
Query: 808 IMELVELNP-LRQSLVGLPGESGLSTE-QRKRLTIAVEL----VANPS--IIFMDEPTSG 859
+ E + L+ L +S+ L G E QR RL AV L NP+ ++ +DEP +
Sbjct: 110 VAEALGLDDKLGRSVNQLSG-----GEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNS 163
Query: 860 LDARAAAIVMRTVRNTVDTGRTVVCTIH 887
LD A + R + G VV + H
Sbjct: 164 LDVAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGY----PKKQETFTRIS- 765
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQSLVGL 824
G Q P +++Y+++ + R+ +EE ++ L + ++ L
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NK 142
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 143 PGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 3e-06
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGM---DEFVPQRTAAYISQHDVHIG 60
LLGP +GKTTL+ + G L SG + G + E V +R Y+ +
Sbjct: 31 LLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKRRIG-YLPEEPSLYE 86
Query: 61 EMTVRETLAFS 71
+TVRE L S
Sbjct: 87 NLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 56/248 (22%), Positives = 86/248 (34%), Gaps = 69/248 (27%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA----AYISQHDV 57
LLG +GKTTLL + G L + SG + ++G + P A Y+ +
Sbjct: 29 VALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85
Query: 58 HIGEMTVRETLAFSARCQGVGSR-------YDMLTELARREKEAGIKPDPDIDVYMKAAA 110
E+TV E L A + R Y++ L R K
Sbjct: 86 IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRK------------------ 127
Query: 111 TEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMD 169
Q A L SGG+++ + +M P L L +D
Sbjct: 128 ---QLAGTL--------------------------SGGEQQMLAIARALMSRPKL-LLLD 157
Query: 170 EISTGLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDAQIVYQ 227
E S GL IV I + I L G ++ + Q A ++ D +L ++V +
Sbjct: 158 EPSEGLAPK----IVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE 213
Query: 228 GPRELVLD 235
G +L
Sbjct: 214 GTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 33/215 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 766 GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
D+ T+ ++ Y + D EI + + +
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRA-------EIERALAAAYAQDFVDK 454
Query: 824 LP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
LP GE+G LS QR+RL IA L+ + I+ +DE TS LD + R V+
Sbjct: 455 LPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQA 510
Query: 875 TVD---TGRTVVCTIHQPSIDIFESFDELFLMKRG 906
++ GRT + H+ S E D + +M G
Sbjct: 511 ALERLMQGRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 12/187 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQETFT 762
L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK E
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDERLI 75
Query: 763 RI-SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R +G Q P +T E++++ P V +++ ++ EL+ L +
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGLAERA 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
P E LS Q++R+ IA L P ++ DEPTS LD V++ +++ + G T
Sbjct: 131 HHYPSE--LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMT 188
Query: 882 VVCTIHQ 888
+V H+
Sbjct: 189 MVIVTHE 195
|
Length = 240 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 869 MRTVRNTV-DTGRTVVCTIH 887
+ +R V + G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 719 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------ITISGYPKKQETFTRISGYC 768
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
Q+ P V +L Y + F ++I+ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 59/236 (25%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE------FVPQRTAAYISQH 55
++GP +GK+TLL A+ G L SG + G +++ +VPQR +
Sbjct: 28 LAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYVPQRRSI---DR 81
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D I +VR+ + G+ + L++ +K E
Sbjct: 82 DFPI---SVRDVVLM-----GLYGHKGLFRRLSKADKAKV------------------DE 115
Query: 116 ANVLTDYYLKVLGL-EVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTG 174
A L+ +GL E+ D + E+ SGGQ++RV +V L +DE G
Sbjct: 116 A-------LERVGLSELADRQI--GEL----SGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 175 LDSSTTFQIVNSIRQNIHILNGTAVISL--LQPAPETYDLFDDIILLSDAQIVYQG 228
+D T I +R+ + T ++ L + FD ++LL + +V G
Sbjct: 163 VDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 47/193 (24%), Positives = 72/193 (37%), Gaps = 48/193 (24%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE-----FVPQRTAAYISQH- 55
LLG +GK+TLLL L G L + SG V +G +D ++ + Q
Sbjct: 21 LALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D + V + +AF G+ E+ RR +EA
Sbjct: 78 DDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA--------------------- 111
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 175
LT + GL + +SGG+KKRV + L +DE + GL
Sbjct: 112 ---LT--AVGASGLR--------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158
Query: 176 DSSTTFQIVNSIR 188
D + Q++ +R
Sbjct: 159 DPAGREQMLAILR 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 56/243 (23%), Positives = 89/243 (36%), Gaps = 65/243 (26%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA------YISQHDV 57
+LG SGK+TLL + G L G + +G + + + + Q
Sbjct: 39 ILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+TV E +AF R T+L ++ V MK
Sbjct: 96 LFSSLTVFENVAFPLR---------EHTKLPESLIR-------EL-VLMK---------- 128
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------LFM 168
L+++GL D +SGG +KRV ALA LF+
Sbjct: 129 ------LELVGL----RGAAADLYPSELSGGMRKRV---------ALARAIALDPELLFL 169
Query: 169 DEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
DE ++GLD + I IR+ L T VI + + D + +L+D +++ +G
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDALGLT-VIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
Query: 229 PRE 231
E
Sbjct: 229 TPE 231
|
Length = 263 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 52/173 (30%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 758
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESL--------LYSAWLRL--PPEVDSETQKMFIEEI 808
R + F Y SL + LR+ P +E + IE +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
E V L+P + P E S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EE-VGLDP--ATRNRYPHE--FSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETF 761
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G+ Q+ +TV++++ + L + P + ++ +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQ 758
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 759 ETFTRIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
T R G Q N + S TV+ ++ LP E+D+ + ++ EL+
Sbjct: 77 LTKARRQIGMIFQHFNLLSSR--TVFGNV------ALPLELDNTPKDEIKRKVTELL--- 125
Query: 816 PLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+LVGL + S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 126 ----ALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 17/152 (11%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR--ISGYCEQN 771
G A++G SGAGK+TL++++AG T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 772 DIHSPFVTVYE--SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829
++ +TV + L + L+L + Q+ + I + + L L LPG+
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKL-----NAAQREKLHAIARQMGIEDL---LARLPGQ-- 129
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-06
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 36/159 (22%)
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHS-- 775
LT L+G SG GKTT++ ++AG +T +G I + G + T + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 776 ------PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829
P +TV+E++ + LR+ QK EI V + LR +V L +
Sbjct: 93 QSYALFPHMTVFENVAFG--LRM--------QKTPAAEITPRV-MEALR--MVQLEEFAQ 139
Query: 830 -----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 140 RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 76/314 (24%), Positives = 113/314 (35%), Gaps = 83/314 (26%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIG 60
LLGP GKTT+L +AG D SGR+ +G + R + Q
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVPAENRHVNTVFQSYALFP 99
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV E +AF R Q + E+ R EA
Sbjct: 100 HMTVFENVAFGLRMQKTPAA-----EITPRVMEA-------------------------- 128
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
L+++ LE +SGGQ++RV +V L +DE + LD
Sbjct: 129 ---LRMVQLEE-----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDIILLSDAQIVYQG-PRELV 233
Q+ N ++ L T V T+D + D I+++ D +I G PRE+
Sbjct: 181 KQMQNELKALQRKLGITFVFV-------THDQEEALTMSDRIVVMRDGRIEQDGTPREI- 232
Query: 234 LDFFESMGFKCPERKGVADFLQE-------VTSRKDQQQYWVHKEMPYRFVTAQEFSEAF 286
++ P+ VA F+ E V R D+Q+ + E +
Sbjct: 233 --------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGRECNIYVN------ 278
Query: 287 QSFTVGQKLADELR 300
+ GQKL LR
Sbjct: 279 FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIH 774
G + G +GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 775 SPFVTVYESLLYSAWL--RLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
++ E+L + L R ++ + +V L +LV LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTLV-----RQLSA 140
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 27/203 (13%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKK 757
++ GV + ALMG SG GK+TL+ + L + G + + G Y
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 758 QETFT--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL- 814
+ R G Q P +T+Y+++ + ++L V S+ +E+ E VE
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWA 129
Query: 815 -------NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
+ ++ L P LS QR+RL IA L P I+ MDEPT+ +D A
Sbjct: 130 LKKAALWDEVKDRLNDYPSN--LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAK 187
Query: 868 VMRTVRNTVDTGRTVVCTIHQPS 890
+ + + T+V H P+
Sbjct: 188 IEELLFE-LKKEYTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 8e-06
Identities = 61/269 (22%), Positives = 91/269 (33%), Gaps = 104/269 (38%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA---AYISQHDV 57
+ +LGP +GK+TLL AL+G+L SG V NG + ++ P A A + QH
Sbjct: 30 VVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSPAELARRRAVLPQH-- 84
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAA--ATEGQE 115
+L+F + V V M A E
Sbjct: 85 --------SSLSFPFTVEEV--------------------------VAMGRAPHGLSRAE 110
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------- 165
+ L L + L + +SGG+++RV LA
Sbjct: 111 DDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV---------QLARVLAQLWEPD 156
Query: 166 -----LFMDEISTGLDSSTTFQIVNSIRQNIHIL---------NGTAVISLLQPAPETYD 211
L +DE ++ LD + H+L G AVI +L +D
Sbjct: 157 GPPRWLLLDEPTSALD----------LAHQHHVLRLARQLAHERGLAVIVVL------HD 200
Query: 212 L------FDDIILLSDAQIVYQGPRELVL 234
L D I+LL ++V G VL
Sbjct: 201 LNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 9/174 (5%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF--TR 763
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 764 ISGYC--EQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQS 820
+G Q P ++V E++ + LP + + + ++ ++L+ +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
G+ G +Q + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 RP--VGDYGGGQQQ--LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 38/193 (19%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-TISGYPKKQETFTRISGYCEQND 772
RPG + ++G +G GK+T + +LAG + N+ P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN- 151
Query: 773 IHSPFVTVYESLLYSAWLR----------LPPEVDSETQKM--------FIEEIMELVEL 814
Y LY LR +P V + ++ +E++E + L
Sbjct: 152 --------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL 203
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ V S LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 204 ENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 875 TVDTGRTVVCTIH 887
+ G+ V+ H
Sbjct: 259 LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 34/208 (16%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGNITI 751
+L +L VS G AL G SGAGK+TL+ L +GR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 752 SG----YPKKQETFTRISGYCEQNDIHSPFVT----VYESLLYSAWLRLPPEVDSETQKM 803
S +++ GY Q P V+ V E LL P E +
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARARARE 131
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
L LN + + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 132 L------LARLN-IPERLWHLP-PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 9e-06
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 764 ISGYCEQNDIHSPFV--TVYESLLYSAW-LRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
+ G QN + FV TV E L + L LPP E +K + E + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKRVDRALAE-IGLEKYRHR 132
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRG 906
T+V H +++ D + +M RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 63/247 (25%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGH---GMDEFVPQ--RTAAYISQ 54
T L+GP GK+TLL L L G V +G +D V + R + Q
Sbjct: 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
++ + +A+ R G+ + EL R +EA
Sbjct: 89 KPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA-------------------- 123
Query: 115 EANVLTDYYLKVLGL--EVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMDEI 171
L+ L EV D G+SGGQ++R+ + P + L +DE
Sbjct: 124 ---------LRKAALWDEVKDRL-----HALGLSGGQQQRLCLARALANEPEV-LLLDEP 168
Query: 172 STGLDSSTTFQIVNSIRQNIHILNG--TAVI---SLLQPAPETYDLFDDIILLSDAQIVY 226
++ LD +T +I I + L T VI ++ Q A + D L + ++V
Sbjct: 169 TSALDPISTAKIEELIAE----LKKEYTIVIVTHNMQQAA----RVADRTAFLLNGRLVE 220
Query: 227 QGPRELV 233
GP E +
Sbjct: 221 FGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 37/217 (17%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNITISGYPKK 757
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPEVDSETQKMFIEEIMELVELN 815
+R+S + + + +L+S +R L PE +++ E +E+ +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 816 PLRQSLVG------LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ +SL G G S QR+ +A V SI+ MDE T+ +D I+
Sbjct: 137 NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ V T RTVV H+ S I ++ D + ++ RG
Sbjct: 197 KVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQ--ET 760
+N VS R G + +MG+SG+GK+TL+ + T G + I+ +K+ E
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
+ Q+ P TV E++ + ++ V ++ E +ELV L
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHK 156
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
P E LS ++R+ +A L +P I+ MDE S LD
Sbjct: 157 Y---PDE--LSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 21/182 (11%)
Query: 720 ALMGVSGAGKTTLMDVL--------AGRKTGG---YITGNI-TISGYPKKQETFTRISGY 767
+MG SG+GK+TL+ VL + K G Y +I I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
Q P +++Y+++ Y L+ + K +EE + V L + P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA- 151
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
S LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V H
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSH 210
Query: 888 QP 889
P
Sbjct: 211 NP 212
|
Length = 257 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISGYPKKQETFT 762
L ++ + +TA++G SG GK+T ++++ +TG + +G +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 763 RIS-----GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIME--LVEL 814
+ G Q +PF ++++++ Y P + K ++EI+E L ++
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYG------PRIHGTKNKKKLQEIVEKSLKDV 139
Query: 815 -------NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+ L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 140 ALWDEVKDRLHTQALSLSGG------QQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 40/185 (21%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 756 KKQE--TFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
KK + R G Q +PF ++YE+++Y LRL + ++E +E
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRV----LDEAVE-- 146
Query: 813 ELNPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
LR + L E GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 147 --RSLRGA--ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPI 202
Query: 864 AAAIV 868
+ +
Sbjct: 203 STLKI 207
|
Length = 272 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 21/196 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 765 S------GYCEQNDIHSPFVT-------VYESLLYSAWLRLPPEVDSETQKMFIEEIMEL 811
+ + Q I P V+ Y S L PE+D I E ++L
Sbjct: 82 AHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGL---PELDPLEFLEIINEKLKL 136
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
V ++P S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 137 VGMDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG 193
Query: 872 VRNTVDTGRTVVCTIH 887
+ + + +++ H
Sbjct: 194 INKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 54/242 (22%), Positives = 81/242 (33%), Gaps = 67/242 (27%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGM----DE------FVPQRTAAYIS 53
LGP +GKTT + L L SG G+ + + VPQ +
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 54 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
++T RE L R G L + E E +
Sbjct: 80 -------DLTGRENLEMMGRLYG----------LPKDEAEERAEE--------------- 107
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEIST 173
L++ L D V SGG ++R+ ++ LF+DE +T
Sbjct: 108 ---------LLELFEL-----GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 174 GLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PR 230
GLD T +I I L G ++ E L D I ++ +I+ +G P
Sbjct: 154 GLDPRTR----RAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPE 209
Query: 231 EL 232
EL
Sbjct: 210 EL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 49/241 (20%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH------GMDEFVPQRTAAYISQ 54
M ++GP +GK+TLL +L G +D SG + +NG G + +R I Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
+ ++V E + G S + L L +E +A +D +
Sbjct: 89 QFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQA-----LDAL--------E 133
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTG 174
+L Y + TL SGGQ++RV +V + DE
Sbjct: 134 RVGILDKAYQRA-------STL---------SGGQQQRVAIARALVQQPKIILADEPVAS 177
Query: 175 LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL----FDDIILLSDAQIVYQGPR 230
LD + ++++ ++ I+ +G VI L DL D II L +IV+ GP
Sbjct: 178 LDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRIIGLKAGRIVFDGPA 232
Query: 231 E 231
Sbjct: 233 S 233
|
Length = 258 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 51/226 (22%), Positives = 87/226 (38%), Gaps = 47/226 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
LLGP +GKTT + + G + L SG V ++G +D + Y+ + +M
Sbjct: 31 LLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPLD-IAARNRIGYLPEERGLYPKMK 86
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V + L + A+ +G+ ARR D +
Sbjct: 87 VIDQLVYLAQLKGLKKEE------ARRR----------------------------IDEW 112
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQ 182
L+ L L ++ V +S G +++V ++ P L L +DE +GLD
Sbjct: 113 LERLELSE-----YANKRVEELSKGNQQKVQFIAAVIHDPEL-LILDEPFSGLDPVNVEL 166
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ + IR+ G VI +L D ++LL+ + V G
Sbjct: 167 LKDVIRELAR--AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 52/171 (30%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
L+GP GK+TLL +AG L+ SG V +G + P Y+ Q D + +T
Sbjct: 35 LVGPSGCGKSTLLRIIAG-LER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLT 89
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V + +A QGV + E +A
Sbjct: 90 VLDNVALGLELQGV----------PKAEARE------------RAEE------------L 115
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRV----TTGEMMVGPALALFMDE 170
L+++GL + +SGG ++RV + V P + L +DE
Sbjct: 116 LELVGLSG-----FENAYPHQLSGGMRQRVALARA---LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 48/239 (20%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHI 59
+ LLGP SGKTTLL +AG L+ G + + G + Q R ++ QH
Sbjct: 30 LVALLGPSGSGKTTLLRLIAG-LERPDS--GTILFGGEDATDVPVQERNVGFVFQHYALF 86
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
MTV + +AF R + + R EA I+ + + L
Sbjct: 87 RHMTVFDNVAFGLRVKPR----------SERPPEAEIR----------------AKVHEL 120
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
LK++ L+ + D +SGGQ++RV + L +DE LD+
Sbjct: 121 ----LKLVQLD-----WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI--------VYQGPR 230
++ +R+ L+ T V + E ++ D +++++ +I VY P
Sbjct: 172 RKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 46/197 (23%), Positives = 68/197 (34%), Gaps = 50/197 (25%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNG--HGMDEFVPQRTAAYISQHDVHIGEMT 63
GP GKTTLL LAG L SG V +NG P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
E L F A G G++ + LA
Sbjct: 90 ALENLHFWAAIHG-GAQRTIEDALAA---------------------------------- 114
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
+ + G E D +S GQ++R+ + + A +DE +T LD + +
Sbjct: 115 VGLTGFE--------DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 184 VNSIRQNIHILNGTAVI 200
+R H+ G V+
Sbjct: 167 AGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 56/230 (24%), Positives = 90/230 (39%), Gaps = 51/230 (22%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDEFVPQ---RTAAYISQHD 56
+L GP SGKTTLL L G L S G + G G E R YI Q
Sbjct: 35 ILTGPSGSGKTTLL-TLIGGLRSVQ--EGSLKVLGQELYGASEKELVQLRRNIGYIFQAH 91
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+G +T R+ + + ++ L+ +E +A A
Sbjct: 92 NLLGFLTARQNVQMAL---------ELQPNLSYQEARE------------RARA------ 124
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGL 175
L+ +GL D L D +SGGQK+RV +V P L + DE + L
Sbjct: 125 ------MLEAVGLG---DHL--DYYPHNLSGGQKQRVAIARALVHRPKL-VLADEPTAAL 172
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225
DS + +V +++ G ++ ++ D+ D I+ + D +++
Sbjct: 173 DSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 53/268 (19%), Positives = 99/268 (36%), Gaps = 48/268 (17%)
Query: 634 KTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEM 693
T + T ++ ++L+ REV + P P EV V+
Sbjct: 220 GTVDPVAETTEEEL-AELMVGREVV----LRVVKP---PSTP-----GEVVLEVE----- 261
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGNITIS 752
L + + VS R G + + GV+G G++ L++ ++G RK +G I ++
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLN 318
Query: 753 GYPKKQETFTRIS-----GYCEQNDIH---SPFVTVYESLLYSAWLRLPPE-----VDSE 799
G R Y ++ +++ E+L+ P +D
Sbjct: 319 GKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFLDRR 377
Query: 800 TQKMFIEEIMELVELNPLRQSLVGLPGES----GLSTEQRKRLTIAVELVANPSIIFMDE 855
+ F E++E ++ P LS +++L +A EL P ++ +
Sbjct: 378 AIRKFARELIEEFDVRA--------PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429
Query: 856 PTSGLDARAAAIVMRTVRNTVDTGRTVV 883
PT GLD A + + D G+ V+
Sbjct: 430 PTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 45/202 (22%), Positives = 66/202 (32%), Gaps = 52/202 (25%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP--QRTAAYISQHDVH 58
+ GP SGKTTLL LAG +GRV NG +D R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
++V E L F S + LAR
Sbjct: 85 KTTLSVLENLRFWHA---DHSDEQVEEALAR----------------------------- 112
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+GL D V +S GQ++RV +++ +DE +T LD +
Sbjct: 113 --------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
Query: 179 TTFQIVNSIRQNIHILNGTAVI 200
+ ++ H G V+
Sbjct: 160 GVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 58/238 (24%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE------FVPQRTAAYISQ 54
+T L+G GK+TL + L+G L + G V + G +D + Q+ A
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
+ I + +AFS R GV E+ RR EA
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEA-------------------- 120
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTG 174
L + D + ++ +S GQKKRV +V A L +DE + G
Sbjct: 121 --------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
Query: 175 LDSSTTFQIVNSIR----QNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
LD + Q++ IR Q H++ + I L+ Y++ D + +L QI+ G
Sbjct: 167 LDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 45/174 (25%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEM 62
L+ G +GKTTLL LAG L + SG++ +G R AY+ ++
Sbjct: 41 LVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADL 97
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
+ E L F G RR K+ M +A
Sbjct: 98 STLENLHFLCGLHG------------RRAKQ------------MPGSA------------ 121
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L ++GL +DTLV R +S GQKKR+ + + PA +DE LD
Sbjct: 122 -LAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 758
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPL 817
++ E + S +TV E+L + + + + I+ + EL L+
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHER 130
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 877
R G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 131 RIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 878 TGRTVVCTI 886
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFT----RISGYCEQND 772
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 773 IHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-----NPLRQSLVGLPG 826
+ FV ++YE++ Y+ L + + + ++ + + ++ V L + L+Q+ + L G
Sbjct: 90 V---FVKSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 146 G------QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 38/188 (20%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFT 762
L GVS +TAL+G SG GK+T + L R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 763 RIS-----GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIM------- 809
+ G Q+ +PF ++ E++ Y P + + ++
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYG------PRKHGDINTGLLARLLGRDDKDA 172
Query: 810 --ELVELNPLRQSLVGLPGES---------GLSTEQRKRLTIAVELVANPSIIFMDEPTS 858
ELVE LRQ+ L E GLS Q++RL IA L +P +I MDEP S
Sbjct: 173 EDELVE-RSLRQA--ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 859 GLDARAAA 866
LD A +
Sbjct: 230 ALDPIATS 237
|
Length = 305 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 42/219 (19%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDI-- 773
G + L+G SG GKTT++ ++AG + G I I G E T S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 774 --HS----PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
S P +++ E++ Y L++ V E +K ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 882
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 883 VCTIHQPSIDIFESFDELFLMKRG-------GQEIYVGP 914
+ H S + F D + +M +G QE+Y P
Sbjct: 191 LYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
LR+ L+ P + LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 877 DTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908
+ G TV+ H+PS+ F L L GG
Sbjct: 136 ELGITVISVGHRPSLWKFHDR-VLDLDGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 30/167 (17%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR 763
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P R
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP-----CAR 77
Query: 764 IS-GYCEQNDIH--------SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL-VE 813
++ Q I+ P ++V E++L+ LP S QKM + + L +
Sbjct: 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQ 131
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
L+ + L R+ + I L+ + I+ +DEPT+ L
Sbjct: 132 LDLDSSA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 3e-05
Identities = 50/253 (19%), Positives = 91/253 (35%), Gaps = 51/253 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEM 62
L+G GKTTLL A+AG + + +GR+ + P +R A + Q+ +
Sbjct: 36 LIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
V + +AF R Q + ++A R +A
Sbjct: 95 KVEDNVAFGLRAQKMPK-----ADIAERVADA---------------------------- 121
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
LK++GL + +SGG ++R+ + L +DE + LD++
Sbjct: 122 -LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ I L ++ + + L D ++ D ++ G P+ L
Sbjct: 176 MREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL--------- 226
Query: 242 FKCPERKGVADFL 254
+ P A+FL
Sbjct: 227 YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 22/162 (13%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNITISGYPKKQETFTRISGYC 768
+TA +G SG GK+T + D++ G G Y G T S E TRI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 769 EQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIME-LVELNPLRQSLVGLPG 826
++ +PF +++++++ Y P + + +E+I+E ++ L +
Sbjct: 170 QKP---TPFEMSIFDNVAYG------PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD 220
Query: 827 ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
++G LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 40/167 (23%)
Query: 716 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKK---QETFT 762
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 763 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
RI +Q + PF ++YE++ + A ++ T M ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA------RINGYTGDM-----DELVE-RSLRKAA 139
Query: 822 V-----GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
V ESG LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 32/162 (19%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQET--FTRIS 765
+TAL+G SG GK+T + D++ G + G+I + G Y + +
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRH----EGHIYLDGVDIYDPAVDVVELRKKV 86
Query: 766 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-----NPLRQ 819
G Q +PF ++++++ Y LR+ E D + + +EE ++ L + L +
Sbjct: 87 GMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDK 142
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
S +GL G Q++RL IA + +P +I MDEP S LD
Sbjct: 143 SALGLSGG------QQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 61/246 (24%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
L+GP SGK+TL+ + D SGR+ +GH + ++ R +SQ DV
Sbjct: 30 TVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQ-DV 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ TV E +A+ +P + +AA + AN
Sbjct: 86 FLFNDTVAENIAYG-------------------------RPGATREEVEEAA----RAAN 116
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALALFMDEISTGL 175
++ ++ L DT++G+ RG+ SGGQ++R+ ++ L +DE ++ L
Sbjct: 117 -AHEF---IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169
Query: 176 DSSTTFQIVNSIRQNIHILNG--TAVI----SLLQPAPETYDLFDDIILLSDAQIVYQGP 229
D+ + + ++ ++ T VI S ++ A D I++L D +IV +G
Sbjct: 170 DTESERLVQAALE---RLMKNRTTFVIAHRLSTIENA-------DRIVVLEDGKIVERGT 219
Query: 230 RELVLD 235
E +L
Sbjct: 220 HEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 47/233 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH--GMDEFVP--QRTAAYIS---QHD 56
++GP +GKTTLL L G+ SG VT G G E + ++ +S
Sbjct: 62 IVGPNGAGKTTLLSLLTGEH---PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+ E TVR+ + S +G + LT AAA
Sbjct: 119 FRVRE-TVRDVVL-SGFFASIGIYQEDLTAE------------------DLAAAQW---- 154
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGL 175
L++LG + D G +S G+++RV +V P L L +DE + GL
Sbjct: 155 ------LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPEL-LILDEPAQGL 202
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
D Q++N + + A++ + A E F +LL + ++V QG
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 24/230 (10%)
Query: 684 TYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RK 740
TY+ P E K LN S F+ +T ++G +G+GK+T++ + G +
Sbjct: 15 TYAKKTPFEFKA----------LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 741 TGGYITGNITISGYPKKQETFTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 797
TG I G+ I KK + R+ G Q + F E + + L
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 798 SETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857
+K + E+++LV+L + P E LS Q++R+ +A + + + + +DEPT
Sbjct: 125 EAYKK--VPELLKLVQLP--EDYVKRSPFE--LSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 858 SGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
GLD + + R + + ++ H + DE+ +M G
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 44/200 (22%)
Query: 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 736
+ ++V+YS IL D +S + T ++G+SG+GK+TL +L
Sbjct: 473 DIVINDVSYSYGYGSN-----ILSD-------ISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 737 AGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFV---TVYESLLYSAWL 790
G +G I ++G+ K T + Y Q P++ ++ E+LL A
Sbjct: 521 VGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE----PYIFSGSILENLLLGA-- 572
Query: 791 RLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIA 841
+ + +EI E+ ++ + +P E G +S Q++R+ +A
Sbjct: 573 ---------KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623
Query: 842 VELVANPSIIFMDEPTSGLD 861
L+ + ++ +DE TS LD
Sbjct: 624 RALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 723 GVSGAGKTTLMDVLAGRK---TGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
G SG GK+TL+ ++AG + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL--RQSLVGLPGESGLSTEQRKR 837
V E++ S L+L E + + ++ E+++L L R+ P LS QR+R
Sbjct: 92 VAENM--SFGLKLAGAKKEEINQR-VNQVAEVLQLAHLLDRK-----PKA--LSGGQRQR 141
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 4e-05
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L+G+S P ++G +GAGK+++++ L + G I I + T
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 765 SGYCEQNDIHSPFVTVYES-LLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQSLV 822
D+ + +S +L+S +R + SE + E +E + + + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 823 GLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
GL E S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 37/248 (14%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKK 757
D ++ VS G + AL+G SG GK+TL+ +LAG + G + + +S P
Sbjct: 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYS-AWLRLPP-EVDSETQKMFIEEIMELVELN 815
Q + Q+ P +TV +++ + +LP E+ S + E++ LV +
Sbjct: 90 QRPINMMF----QSYALFPHMTVEQNIAFGLKQDKLPKAEIASR-----VNEMLGLVHMQ 140
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
+ P + LS QR+R+ +A L P ++ +DEP LD + + V +
Sbjct: 141 EFAKRK---PHQ--LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195
Query: 876 VD-TGRTVVCTIHQPSIDIFESFD---ELFLMKRGG-------QEIYVGPLGRHSCHLI- 923
++ G T V H D E+ + +M RG +EIY P R+S I
Sbjct: 196 LERVGVTCVMVTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251
Query: 924 --RYFEGI 929
FEG+
Sbjct: 252 SVNVFEGV 259
|
Length = 377 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 45/234 (19%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
++G SGK+TLL L G + GR+ +G +++ R Y+ Q D
Sbjct: 501 KVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQ-DP 556
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ ++RE +A P+ + ++AA Q A
Sbjct: 557 FLFSGSIRENIALGN-------------------------PEATDEEIIEAA----QLAG 587
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ L + DT VG E +SGGQ++R+ ++ L +DE ++ LD
Sbjct: 588 AHEF----IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
T I+ ++ Q IL G VI ++ T D II+L +IV QG E
Sbjct: 643 ETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGKIVEQGSHE 692
|
Length = 709 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 57/211 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
L+GP +GK+TLL + + +L SG + NG + + R Y+ + IG
Sbjct: 29 FVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRAIPYLRRK---IG 81
Query: 61 ----------EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAA 110
+ V E +AF+ GV R E+ +R A
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA---------------- 120
Query: 111 TEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDE 170
L+++GL + +SGG+++RV +V L DE
Sbjct: 121 -------------LELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADE 162
Query: 171 ISTGLDSSTTFQIVNSIRQNIHILNGTAVIS 201
+ LD TT++I+N + + I+ T V++
Sbjct: 163 PTGNLDPDTTWEIMN-LLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 60/258 (23%), Positives = 99/258 (38%), Gaps = 67/258 (25%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++GP SGK+TL + G ++ G + ++G I E++
Sbjct: 35 IMGPNGSGKSTLAYTIMGHPKYEVT-EGEILFDG-------------------EDILELS 74
Query: 64 VRE------TLAFS--ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
E LAF GV + D L A + P+ +K A
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNS-DFLR-AAMNARRGARGILPEFIKELKEKA----- 127
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTG 174
++LGL D+ + + G SGG+KKR ++++ P LA+ +DE +G
Sbjct: 128 ---------ELLGL---DEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI-LDEPDSG 174
Query: 175 LDSSTTFQI---VNSIRQNIHILNGTAVISLLQPAPETYDLFDDII-----LLSDAQIVY 226
LD + +N++R+ G +I+ Q L D I +L D +IV
Sbjct: 175 LDIDALKIVAEGINALREEG---RGVLIITHYQ------RLLDYIKPDKVHVLYDGRIVK 225
Query: 227 QGPRELVLDFFESMGFKC 244
G EL + E G+
Sbjct: 226 SGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 48/224 (21%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L V+ G TA +G +G+GK+T+M +L G G++ + T I+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDD--------TLIT 72
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--------- 816
+ DI V L++ + P E+Q +F E +++ V P
Sbjct: 73 STSKNKDIKQIRKKV--GLVF----QFP-----ESQ-LFEETVLKDVAFGPQNFGVSQEE 120
Query: 817 ----LRQSL--VGL--------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
R+ L VG+ P E LS Q +R+ IA L P I+ +DEPT+GLD
Sbjct: 121 AEALAREKLALVGISESLFEKNPFE--LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 863 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ +M + +G T+V H D+ D ++++++G
Sbjct: 179 KGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 820 SLVGLPGES------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 874 NTVDTGRTVVCTIH 887
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 19/213 (8%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 759
E + LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAE 74
Query: 760 T---FTRISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
R G QN D TV + + + E Q + EE+++ V+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM----------ENQGIPREEMIKRVDEA 124
Query: 816 PLRQSLVGLPGE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L +++ + LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 874 NTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ + V +I +D S D + +MK G
Sbjct: 185 EIKEKYQLTVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 48/182 (26%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFT 762
+ G+ F +TAL+G SG+GK+T + L +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 763 RISGYCEQNDIHSPFVTVYE--SLLYSAWLRLPP-------------EVDSETQKMFIEE 807
DI+ + VYE + + R P E K ++E
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE 138
Query: 808 IMELVELNPLRQSLV------GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
I+E L+Q+ + L +S LS Q++RL IA + P I+ MDEP S
Sbjct: 139 IVE----TSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA 193
Query: 860 LD 861
LD
Sbjct: 194 LD 195
|
Length = 267 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISG 766
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 767 -YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
+ + N +P + + + LRL +++ E ++ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 34/221 (15%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--KQ 758
D +L GVS +TA++G SG GK+T + L + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 759 ETFTR---ISGYCEQNDIHSPF-----VTVYESLLYSAWL---RLPPEVDSETQKMFIEE 807
+ R ++ Q + P ++VY+++ Y + R E+D +E
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 808 IMELVEL-----NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
++ +L + + +S + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGG------QQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 863 RAAAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFESFDELF 901
A+ V +++ + + T+V H + F F
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 6e-05
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
++GP SGK+TLL L D SG + +G + + + + AY+ Q D
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DP 85
Query: 58 HIGEMTVRE 66
+ T+RE
Sbjct: 86 FLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 134 DTLVGDEMVRG--ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNI 191
DT+VG+ RG +SGG+K+RV ++ L +DE ++ LD+ T +I ++R
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-- 182
Query: 192 HILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELV 233
+ G I + + D II+L D +IV +G EL+
Sbjct: 183 -VSKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELL 223
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 43/174 (24%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
L+G +GK+TLL LAG+L+ SG VT Y+SQ E T
Sbjct: 34 LVGRNGAGKSTLLKILAGELEP---DSGEVTRP--------KGLRVGYLSQEPPLDPEKT 82
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKA-AATEGQEANVLTDY 122
V + + +G G ++L EL D + +G +
Sbjct: 83 VLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L LG +D V +SGG ++RV ++ L +DE + LD
Sbjct: 138 ALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 25/211 (11%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGY--PKKQETFTR 763
V+ + G A++G +G+GK+TL+ L G + T G +T G I+ KK + +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 764 ISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVELNP--L 817
G Q H F TV + + + P V E K E++ELV L L
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFG------PMNFGVSEEDAKQKAREMIELVGLPEELL 139
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTV 876
+S P E LS Q +R+ IA L P ++ +DEPT+GLD + +M +
Sbjct: 140 ARS----PFE--LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK 193
Query: 877 DTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907
+ G T V H D D++ +M +G
Sbjct: 194 EKGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 888 QPSI 891
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 689 MPKEMKLQGI-LEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 741
MP++++L+ I L+ L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 742 GGYITGNITISGYPKKQETFT-RISGYCEQNDIHSPFVTVY-------ESLLYSAWLRLP 793
G + + G P R QN S F ++ E+ L P
Sbjct: 61 A----GRVLLDGKPVAPCALRGRKIATIMQNP-RSAFNPLHTMHTHARETCLALG---KP 112
Query: 794 PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853
+ + + +E V L + L P E +S +R+ IA+ L+ I
Sbjct: 113 ADDAT------LTAALEAVGLENAARVLKLYPFE--MSGGMLQRMMIALALLCEAPFIIA 164
Query: 854 DEPTSGLDARAAA 866
DEPT+ LD A A
Sbjct: 165 DEPTTDLDVVAQA 177
|
Length = 254 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
EV ++K+ I + + L ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 855 EPTSGLDARAAAIVMRTVRN 874
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 46/227 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGM--DEFVPQRTAAYISQHDVHIGE 61
LLGP +GKTT L LAG L+ +G T +G + + +R ++S
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDR 92
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+T RE L + A G+ +G E +
Sbjct: 93 LTARENLEYFAGLYGL----------------------------------KGDELTARLE 118
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 181
LG+E + L D V G S G +++V +V L +DE +TGLD T
Sbjct: 119 ELADRLGME---ELL--DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173
Query: 182 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ IRQ + G ++ E L D +++L ++VY+G
Sbjct: 174 ALREFIRQLRAL--GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 70/263 (26%), Positives = 106/263 (40%), Gaps = 58/263 (22%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDS----KLKFSGRVTYNGHGMDEFVPQRTAAYISQHD 56
M LLGP SGKTTLL +AG L+ ++F G H D R ++ QH
Sbjct: 30 MVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARD-----RKVGFVFQHY 83
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
MTV + +AF LT L RRE +P+ AA +
Sbjct: 84 ALFRHMTVFDNIAFG------------LTVLPRRE-----RPN---------AAAIKAKV 117
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM-VGPALALFMDEISTGL 175
L LE+ + D +SGGQK+RV + V P + L +DE L
Sbjct: 118 TQL---------LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI-LLLDEPFGAL 167
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVL 234
D+ ++ +RQ L T+V + E ++ D ++++S I G P ++
Sbjct: 168 DAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226
Query: 235 DFFESMGFKCPERKGVADFLQEV 257
+ P + V +F+ EV
Sbjct: 227 E---------PATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 67/268 (25%), Positives = 106/268 (39%), Gaps = 83/268 (30%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP--QRTAAYISQ----- 54
LLGP GKTTLL +AG + SG + +G + + VP +R + Q
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPS-----SGEILLDGEDITD-VPPEKRPIGMVFQSYALF 89
Query: 55 -HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
H MTV E +AF + + ++ K+A I KA E
Sbjct: 90 PH------MTVEENVAFGLK-------------VRKKLKKAEI----------KARVEE- 119
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEIST 173
L+++GLE D +SGGQ++RV +V L +DE +
Sbjct: 120 ---------ALELVGLEG-----FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165
Query: 174 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDIILLSDAQIVYQ 227
LD+ Q+ +++ L T V T+D + D I +++D +I
Sbjct: 166 ALDAKLREQMRKELKELQRELGITFVYV-------THDQEEALAMSDRIAVMNDGRIEQV 218
Query: 228 G-PRELVLDFFESMGFKCPERKGVADFL 254
G P E+ ++ P + VADF+
Sbjct: 219 GTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 8e-05
Identities = 55/245 (22%), Positives = 87/245 (35%), Gaps = 71/245 (28%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA----AYISQHD 56
+ LLG +GKTTLL + G + + SGR+ ++G + P A AY+ +
Sbjct: 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGR 87
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVY--------MKA 108
+TV E L L R + + D + +VY +
Sbjct: 88 RIFPRLTVEENL---------------LLGAYARRDKEAQERDLE-EVYELFPRLKERR- 130
Query: 109 AATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALF 167
Q A L SGG+++ + +M P L L
Sbjct: 131 ----NQRAGTL--------------------------SGGEQQMLAIARALMSRPKL-LL 159
Query: 168 MDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLL---QPAPETYDLFDDIILLSDAQI 224
+DE S GL IV I + I L +++L Q A ++ D +L + +I
Sbjct: 160 LDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRI 215
Query: 225 VYQGP 229
V G
Sbjct: 216 VLSGT 220
|
Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 55/233 (23%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIG 60
+LG SGK+TLL LAG D + G +T NG + Q T + ++Q VH+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLF 424
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
T+R+ L + PD D + AA + L
Sbjct: 425 SGTLRDNLRLA-------------------------NPDAS-DEELWAAL----QQVGLE 454
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
+ +T +G E R +SGG+++R+ ++ A +DE + GLD T
Sbjct: 455 KL---LESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDL-----FDDIILLSDAQIVYQG 228
Q++ + + H T ++ T+ L D II+L + +I+ +G
Sbjct: 511 RQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 42/212 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 761
L VS G L+G +GAGK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 762 TRISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETQKMFIEEIMELVELN----- 815
R+S +P +T E++ L L L + E I+EI+E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFIDL 138
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
P++ S+ + RL A+ P I+ +DE + DA R +R
Sbjct: 139 PVKT----------YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLREL 188
Query: 876 VDTGRTVVCTIHQPSIDIFESF-DELFLMKRG 906
+ G+TV+ H + D ++++G
Sbjct: 189 LKQGKTVILVSH--DPSSIKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 41/166 (24%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 763 RISGYCEQN---DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE----LN 815
RI GY Q D P L + +LRL P +K I ++ V+ ++
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQAGHLID 115
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
Q L G GE+ +R+ +A L+ P ++ +DEPT G+D
Sbjct: 116 APMQKLSG--GET-------QRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 48/198 (24%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVPQRTAAY-IS---QH 55
L+GP +GKTTL + G K S G V + G + P R A I+ Q
Sbjct: 33 VGLIGPNGAGKTTLFNLITGFYKPSS-----GTVIFRGRDITGLPPHRIARLGIARTFQI 87
Query: 56 DVHI-GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
+ +TV E +A A + S + E+EA + A
Sbjct: 88 -TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA-----------RERARE--- 132
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE----MMVGPALALFMDE 170
L+ +GL D G+ +S GQ++R+ E + P L L +DE
Sbjct: 133 --------LLEFVGLGELADRPAGN-----LSYGQQRRL---EIARALATQPKL-LLLDE 175
Query: 171 ISTGLDSSTTFQIVNSIR 188
+ GL+ T ++ IR
Sbjct: 176 PAAGLNPEETEELAELIR 193
|
Length = 250 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 63/254 (24%), Positives = 93/254 (36%), Gaps = 76/254 (29%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD----EFVPQR-TAAYISQH--- 55
L+G SGK+TL LAG L SG + ++G +D E R + Q
Sbjct: 322 LVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378
Query: 56 --DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
+ MTV + LA R G GS A R
Sbjct: 379 SLNPR---MTVGDILAEPLRIHGGGSG-------AERRA--------------------- 407
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFM 168
L+++GL D +SGGQ++RV + ALA L +
Sbjct: 408 -----RVAELLELVGL----PPEFLDRYPHELSGGQRQRVA-----IARALALEPKLLIL 453
Query: 169 DEISTGLDSSTTFQIVNSIRQNIHILNGTAV-IS-----LLQPAPETYDLFDDIILLSDA 222
DE + LD S Q++N ++ L T + IS + A D + ++ D
Sbjct: 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA-------DRVAVMYDG 506
Query: 223 QIVYQGPRELVLDF 236
+IV +GP E V +
Sbjct: 507 RIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 68/250 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKF-SGRVTYNGHGMDEFVPQRTAAYIS---QHD 56
+T ++GP +GK+TLL ++ +L LK SG +T +G + + A +S Q +
Sbjct: 29 ITSIIGPNGAGKSTLL-SMMSRL---LKKDSGEITIDGLELTSTPSKELAKKLSILKQEN 84
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+TVR+ + F R+ P Y + T+ E
Sbjct: 85 HINSRLTVRDLVGFG--------RF------------------P----YSQGRLTK--ED 112
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEI 171
+ + ++ L LE D + DE+ SGGQ++R + LA + +DE
Sbjct: 113 RRIINEAIEYLHLEDLSDRYL-DEL----SGGQRQRA-----FIAMVLAQDTDYVLLDEP 162
Query: 172 STGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDAQIV 225
LD + QI+ +R+ L T V+ L +D+ D I+ L + ++V
Sbjct: 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCYSDHIVALKNGKVV 215
Query: 226 YQGPRELVLD 235
QG + ++
Sbjct: 216 KQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 30/162 (18%), Positives = 47/162 (29%), Gaps = 50/162 (30%)
Query: 13 TTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA----AYISQHDVHIGEMTVRETL 68
+TLL + G L SG + +G ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 69 AFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG 128
F R + + G+ D +
Sbjct: 58 FFGLR------DKEADARAEEALERVGLPDFLDREP------------------------ 87
Query: 129 LEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDE 170
V +SGGQK+RV ++ L +DE
Sbjct: 88 -------------VGTLSGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 36/224 (16%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNITIS---G 753
D +L +S G + ++G SGAGK+ LM VL G T G I ++ + G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 754 YPKKQETFTRISGYC------EQNDIHSPFVTVYESL-------------LYSA------ 788
Y ++ C E+ D + + + LY
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 789 WLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP 848
L E+ E ++ + ++L+E+ L + + + LS +++R+ +A +L P
Sbjct: 131 VLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHIARD--LSGGEKQRVVLARQLAKEP 187
Query: 849 SIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSI 891
+ DEPT LD + A +V + V +G ++V T H P +
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---------PKKQETFTRISGYCEQN 771
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831
P +TV ++L+ + P V ++ + +L+E L+ P LS
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH--LS 143
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 31/168 (18%)
Query: 710 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFTRISG 766
G G V+ + G +G GKTT +LAG G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 767 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
TV + LL S ++ S + EI++ ++L L V
Sbjct: 412 --------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKNV---- 451
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFT 762
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 763 RIS-GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R G Q+ H + TVY++ + +P + + + ++ L
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDN------VAIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
P + LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFPIQ--LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 880 RTVVCTIH 887
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 33/215 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFTR 763
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 764 ISGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL------ 814
+ QN +H T+ ++ Y+ T++ E+I E +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR-----------TEQYSREQIEEAARMAYAMDF 462
Query: 815 -NPLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
N + L + GE+G LS QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 463 INKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 872 VRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ + + RT + H+ S E DE+ +++ G
Sbjct: 523 L-DELQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 829 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 884
LS +++ +A+ L + + +DE GLD R + + + G V+
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 885 TIHQPSIDIFESFDELFLMKR 905
H P ++ E D+L +K+
Sbjct: 137 ITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 29/166 (17%)
Query: 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITISGYPKKQETFTRISGY 767
G+ + ++G +G GKTT + +LAG G T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
I + + LL S D T F EI + +++ + V
Sbjct: 70 -----IKADYEGTVRDLLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQ 54
+ L+GP SGK+TLL A+AG L SG + +G + + + R Y+ Q
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 43/177 (24%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP--QRTAAYISQHDVHIGE 61
L+GP GK+TLL + G L + +G + N +D +P QR + Q +
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAAQRQIGILFQDALLFPH 91
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
++V + L F+ A +G +
Sbjct: 92 LSVGQNLLFAL-----------------------------------PATLKGNARRNAAN 116
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
L+ GL + +SGGQ+ RV ++ AL +DE + LD +
Sbjct: 117 AALERSGL-----DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 56/244 (22%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
L+G SGK+TL+ + + SG++ +GH + ++ R A +SQ DV
Sbjct: 360 TVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ-DV 415
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ T+ +A+ Q D A E+ A
Sbjct: 416 VLFNDTIANNIAYGRTEQ-----ADR----AEIERAL-------------------AAAY 447
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
D+ V L + DT +G+ V +SGGQ++R+ ++ A L +DE ++ LD+
Sbjct: 448 -AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDN 502
Query: 178 STTFQIVNSIRQNIHILNG--TAVI----SLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
+ + ++ ++ G T VI S ++ A D I+++ D +IV +G
Sbjct: 503 ESERLVQAALE---RLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERGTHN 552
Query: 232 LVLD 235
+L
Sbjct: 553 ELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYITGNITISG-----YPK 756
+ G+S G AL+G SG+GK+ +++ +L + +G+I G +
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASE 84
Query: 757 KQETFTRISGYCEQNDIH----------SPFVTVYESLLYSAWLRLPPEVDSETQKMFIE 806
+Q + G N I +P T+ L LRL + +
Sbjct: 85 RQ--LRGVRG----NKIGMIFQEPMTSLNPLHTI-GKQLAEV-LRLHRGLSRAAARARAL 136
Query: 807 EIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
E++ELV + + L P E LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 137 ELLELVGIPEPEKRLDAYPHE--LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 3/197 (1%)
Query: 1019 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1078
L+ + L FG G + + + + V + +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1079 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMI---GFEWIAA 1135
A+ R + S + F + +PY+ V S + G+++ + G ++ +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1136 KFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLW 1195
L + L +++ A+ V L SG P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1196 WRWYYWANPVAWTMYGL 1212
+ + NP+ + + L
Sbjct: 228 LQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 39/209 (18%), Positives = 61/209 (29%), Gaps = 70/209 (33%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIH 774
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 775 SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834
E + L+ L +VG SG
Sbjct: 39 --------------------------------EDILEEVLDQLLLIIVGGKKASG---SG 63
Query: 835 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 886
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 887 HQPSIDIFESFDELFLMKRGGQEIYVGPL 915
+ L +R + I + +
Sbjct: 124 NDEKD-----LGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 827 ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 884
SG LS Q++RL IA + +P +I MDEP S LD A + + + + TVV
Sbjct: 176 SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVI 234
Query: 885 TIH 887
H
Sbjct: 235 VTH 237
|
Length = 285 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 38/171 (22%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNITISGYPKKQETFTRIS 765
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 766 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
++ + PF +++E++ Y +R ++ +EE +E N LR + L
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNA--AL 147
Query: 825 PGES---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
E LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 148 WDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 50/208 (24%)
Query: 680 FDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 739
F EV+YS K +L + +S F G + ++G SGAGK+TL+ ++
Sbjct: 6 FKEVSYSSF------------GKEILKD-ISVKFEGGAIYTIVGPSGAGKSTLIKLI--N 50
Query: 740 KTGGYITGNITISGYPKKQ----ETFTRISGYCEQNDIHSPFV---TVYESLLYSAWLRL 792
+ G+I I G K + +I +Q P + TV +++ Y L+
Sbjct: 51 RLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKG 105
Query: 793 PPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE------SGLSTEQRKRLTIAVELVA 846
VD E S+VGL E LS + +R++IA L
Sbjct: 106 EKNVDVE-----------------YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 847 NPSIIFMDEPTSGLDARAAAIVMRTVRN 874
NP ++ +DEPTS LD + I+ +
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 67/235 (28%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHI 59
LGP +GKTT + + G K D SG +T++G + +R A I +
Sbjct: 31 FLGPNGAGKTTTMKIILGLIKPD-----SGEITFDGKSYQKNIEALRRIGALIEAPGFY- 84
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
+T RE L AR G+ ID
Sbjct: 85 PNLTARENLRLLARLLGI--------------------RKKRIDE--------------- 109
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSS 178
L V+GL+ + V+G S G K+R+ ++G P L L +DE + GLD
Sbjct: 110 ---VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLGNPDL-LILDEPTNGLDP- 159
Query: 179 TTFQIVNSIRQNIHILN---GTAVIS--LLQPAPETYDLFDDIILLSDAQIVYQG 228
+ +R+ I L T +IS LL E + D I +++ +++ +G
Sbjct: 160 ---DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 46/187 (24%), Positives = 61/187 (32%), Gaps = 68/187 (36%)
Query: 4 LLGPPCSGKTT---LLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRT------AAYISQ 54
LLGP +GKTT +LL L + G E VP R + Q
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCG----------EPVPSRARHARQRVGVVPQ 87
Query: 55 HDVHIGEMTVRETLAFSARCQGVGS-----RYDMLTELARREKEAGIKPDPDIDVYMKAA 109
D + TVRE L R G+ + L E A+ E +A
Sbjct: 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA--------------- 132
Query: 110 ATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMD 169
D V +SGG K+R+T +V L +D
Sbjct: 133 -----------------------------DAKVGELSGGMKRRLTLARALVNDPDVLVLD 163
Query: 170 EISTGLD 176
E +TGLD
Sbjct: 164 EPTTGLD 170
|
Length = 306 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 41/233 (17%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++G SGK+TL KL + +VP+ + HD+ + +
Sbjct: 33 IVGRSGSGKSTL-----TKLIQRF---------------YVPENGRVLVDGHDLALAD-- 70
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
A+ R GV + ++L + R+ A P ++ ++AA G +
Sbjct: 71 ----PAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISE--- 123
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
L DT+VG++ G+SGGQ++R+ ++ L DE ++ LD ++
Sbjct: 124 -----LPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALD----YES 173
Query: 184 VNSIRQNIH-ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
++I +N+H I G VI ++ T D II++ +IV QG + +L
Sbjct: 174 EHAIMRNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 69/251 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKL---DSKLKFSGR-VTYNGHGMDEFVPQRTAAYISQH- 55
M LLGP +GK+TL L G L ++ G + Y+ + E ++T + Q+
Sbjct: 30 MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV--RKTVGIVFQNP 87
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D + TV E +AF G+ E+ +R KEA +KA EG E
Sbjct: 88 DDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA-----------LKAVGMEGFE 131
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT-TGEMMVGPALALFMDEISTG 174
++ +SGGQKKRV G + + P + + +DE ++G
Sbjct: 132 -----------------------NKPPHHLSGGQKKRVAIAGILAMKPEI-IVLDEPTSG 167
Query: 175 LDSSTTFQIVNSIRQNIHILNG---TAVISLLQPAPETYDL------FDDIILLSDAQIV 225
LD QI+ ++ LN T +IS T+D+ D + ++SD +I+
Sbjct: 168 LDPMGASQIMKL----LYDLNKEGITIIIS-------THDVDLVPVYADKVYVMSDGKII 216
Query: 226 YQG-PRELVLD 235
+G P+E+ D
Sbjct: 217 KEGTPKEVFSD 227
|
Length = 275 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 52/248 (20%)
Query: 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 735
+ F V++ + Q D L VS G T+++G +G+GK+T+ +
Sbjct: 6 SIIVFKNVSF--------QYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKL 54
Query: 736 LAGRKTGGYITGNITISGYPKKQETFTRIS---GYCEQNDIHSPFV--TV-YE------- 782
+ G + +G I + + F ++ G QN + FV V Y+
Sbjct: 55 MIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP-DNQFVGSIVKYDVAFGLEN 111
Query: 783 -SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIA 841
++ Y R E + +++E + P +L G Q++R+ IA
Sbjct: 112 HAVPYDEMHRRVSEALKQV------DMLERADYEP--NALSG---------GQKQRVAIA 154
Query: 842 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFESF--D 898
L NPS+I +DE TS LD A ++ VR + T++ H D+ E+ D
Sbjct: 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH----DLSEAMEAD 210
Query: 899 ELFLMKRG 906
+ +M +G
Sbjct: 211 HVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-----YPKKQETFTRISGYCEQ 770
G TA++G +G GK+TL+ L+ T G++ + G Y K E RI G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASK-EVARRI-GLLAQ 88
Query: 771 NDIHSPFVTVYESL---------LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
N +TV E + L++ W + + ++ T+ M I L QS+
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQSV 141
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 142 ------DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 62/176 (35%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
+LGP GK+TLL +AG L+ SG V +G + P Y+ Q D + +T
Sbjct: 34 ILGPSGCGKSTLLRLIAG-LEK--PTSGEVLLDGRPVTGPGPDI--GYVFQEDALLPWLT 88
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V + +A +G ++ E K
Sbjct: 89 VLDNVALGLELRGK----------SKAEARERAK------------------------EL 114
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------LFMDE 170
L+++GL D+ +SGG ++RV A+A L +DE
Sbjct: 115 LELVGL-----AGFEDKYPHQLSGGMRQRV---------AIARALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 45/234 (19%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDEFVPQRTAAYISQHDV 57
++GP SGK+TL+ L D SG + +G + ++ +SQ D
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQ-DP 412
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ T+RE +A G E+ K A +
Sbjct: 413 LLFSGTIRENIAL-------GRPDATDEEIEEALKLANAH-----EFIAN---------- 450
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
L D Y DT+VG E +SGGQ++R+ ++ L +DE ++ LD+
Sbjct: 451 -LPDGY----------DTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
T I +++++ + T +I + + T D II+L + +IV +G E
Sbjct: 499 ETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDNGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 47/238 (19%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYIS---QHDVH 58
T L+GP GK+TLL A L + SG V + ++ A ++ QH +
Sbjct: 31 TALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+TVRE +A+ G P ++ E N
Sbjct: 88 PEGITVRELVAY------------------------GRSP------WLSLWGRLSAEDNA 117
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+ ++ + D + D +SGGQ++R ++ + +DE +T LD +
Sbjct: 118 RVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172
Query: 179 TTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
+++ +R+ LN G V+++L + D +++L++ ++ QG E V+
Sbjct: 173 HQVELMRLMRE----LNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 23/101 (22%)
Query: 146 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI 200
SGG ++RV M+ ALA L DE +T LD + QI++ +++ + GTA+I
Sbjct: 155 SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREKGTALI 208
Query: 201 SLLQPAPETYDL------FDDIILLSDAQIVYQGPRELVLD 235
+ T+DL D + ++ +IV +GP E +
Sbjct: 209 LI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 66/251 (26%), Positives = 99/251 (39%), Gaps = 53/251 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSK-----LKFSGRVTYNGHGMDEFVPQRTA---AYI 52
+T LLG +GK+TLL ALAG L + +G VT NG + R A A +
Sbjct: 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVL 88
Query: 53 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATE 112
Q + AFSAR + RY ARR AG D ++ +A A
Sbjct: 89 PQ--------AAQPAFAFSAREIVLLGRYPH----ARR---AGALTHRDGEIAWQALALA 133
Query: 113 GQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM---------VGPA 163
G LVG + V +SGG+ RV ++ P
Sbjct: 134 GA-------------------TALVGRD-VTTLSGGELARVQFARVLAQLWPPHDAAQPP 173
Query: 164 LALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223
L +DE + LD + ++++++R+ N V++++ D I +L+D
Sbjct: 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGA 232
Query: 224 IVYQGPRELVL 234
IV G VL
Sbjct: 233 IVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 70/246 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKF----SGRVTYNGHGMDEFVPQ---RTAAYISQHD 56
L+G GK+T++ L +F SG + +G + + + +SQ +
Sbjct: 34 LVGSSGCGKSTVVSLL-------ERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ-E 85
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+ + T+ E + + G E+ K+A I D M
Sbjct: 86 PVLFDGTIAENIRY-------GKPDATDEEVEEAAKKANIH-----DFIMS--------- 124
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRG--ISGGQKKRVTTGEMMV-GPALALFMDEIST 173
L D Y DTLVG+ RG +SGGQK+R+ ++ P + L +DE ++
Sbjct: 125 --LPDGY----------DTLVGE---RGSQLSGGQKQRIAIARALLRNPKI-LLLDEATS 168
Query: 174 GLDSSTTFQIVNSIRQNIHILNGTAVI-----SLLQPAPETYDLFDDIILLSDAQIVYQG 228
LD+ + ++V + T ++ S ++ A D I +L + Q+V QG
Sbjct: 169 ALDAESE-KLVQEALDRA-MKGRTTIVIAHRLSTIRNA-------DLIAVLQNGQVVEQG 219
Query: 229 -PRELV 233
EL+
Sbjct: 220 THDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 144 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL 202
G SGG+KKR ++++ P LA+ DE +GLD + I + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 203 LQPAPETYDLFDDII-----LLSDAQIVYQGPRELVLDFFE 238
Q L D I +L D +IV G +EL L+ +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 707 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQ-ETFT 762
+S + G + G+ G+G+T LM+ L G R G IS P+ +
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS--PRSPLDAVK 337
Query: 763 RISGYCEQNDIHSPF---------VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
+ Y ++ + F + + SL + ++ E EL+
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 814 L--NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
L + + Q++ L G + Q+K L I+ L P +I DEPT G+D A A + +
Sbjct: 398 LKCHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV 451
Query: 872 VRNTVDTGRTVV 883
+R D G+ ++
Sbjct: 452 MRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 30/226 (13%), Positives = 76/226 (33%), Gaps = 10/226 (4%)
Query: 325 LLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFF 384
L+ + ++L+ + + + H + S +
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 385 AVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYA---AWAYALPAWILKIPISFLEVAVWV 441
+M +F+G+ + + + + L + + ++ L + +
Sbjct: 95 ILMSVLFSGIF-SFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVL 153
Query: 442 FLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA--AGRNMIVAMSFGSFVLLVL 499
+ +++G L LLLLL+ +A+ + + A + A + G+ ++L L
Sbjct: 154 LVIAFLLGVPFLGSLLL--LLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPL 211
Query: 500 FAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKF 545
G + + W + +P+ YA +A+ + WR
Sbjct: 212 GFLSGVFFPLELLPAWLQGISYINPLTYAIDAL--RYVYLGGWRND 255
|
Length = 286 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 689 MPKEMKLQGI--LEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG- 738
M ++K++G+ K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 739 RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVD 797
R G + N I + G Q +PF ++++++ + P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 798 SETQKMFIEEIMELVELNPLRQSLV-----------GLPGESGLSTEQRKRLTIAVELVA 846
T + ++E++E LRQ+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 847 NPSIIFMDEPTSGLD 861
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 20/109 (18%), Positives = 39/109 (35%)
Query: 1110 IPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAA 1169
+ + V II+ + G L L + G + ++ N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1170 IVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFG 1218
+V + L + F G + P +P + +W + P + GL+ +G
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 8e-04
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
FIE + + N VG G+S LS Q++R+ IA L+ P I+ +DE TS LD+
Sbjct: 1340 FIESLPNKYDTN------VGPYGKS-LSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392
Query: 864 AAAIVMRTVRNTVDTG-RTVVCTIHQ 888
+ ++ +T+ + D +T++ H+
Sbjct: 1393 SEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-04
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 826 GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
GE G LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GRT +
Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRTTL 529
Query: 884 CTIHQ 888
H+
Sbjct: 530 IIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 9e-04
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP-KKQ-E 759
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 760 TFTRISGYC-EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ + Y Q I +T E+L + RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 819 QSL--VGLPG-E----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
++L VGL G E LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 872 VRNTVDTGRTVVCTIHQP 889
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 43/176 (24%), Positives = 63/176 (35%), Gaps = 47/176 (26%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIG 60
LLGP GKTTLL +AG SG + +G + P +R + Q+
Sbjct: 31 LLGPSGCGKTTLLRLIAGFETPT-----SGEILLDGKDITNLPPHKRPVNTVFQNYALFP 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+TV E +AF R + + E+ R EA
Sbjct: 86 HLTVFENIAFGLRLKKLPK-----AEIKERVAEA-------------------------- 114
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L ++ LE + +SGGQ++RV +V L +DE LD
Sbjct: 115 ---LDLVQLEG-----YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 53/247 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
+LGP GKTTLL +AG + G + NG ++ P + Q++ + +
Sbjct: 36 VLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLN 90
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V + +AF + +G+ RRE +
Sbjct: 91 VIDNVAFGLQLRGIEKA-------QRRE---------------------------IAHQM 116
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQ 182
L ++GLE + + +SGG ++RV + V P L L +DE LD+ T Q
Sbjct: 117 LALVGLE---GA--EHKYIWQLSGGMRQRVGIARALAVEPQL-LLLDEPFGALDALTREQ 170
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DAQIVYQGPRELVLDFFESM 240
+ + ++ G V+ + E L +++LS ++V L LDF
Sbjct: 171 M-QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV----ERLPLDFARRY 225
Query: 241 GFKCPER 247
P R
Sbjct: 226 AAGEPSR 232
|
Length = 259 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT-TGEMMVGPALALFMDEIST 173
EA L +YL +GL DD+ + + G+SGGQK+RV G + + P + +F DE +
Sbjct: 151 EAKKLAKFYLNKMGL---DDSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILIF-DEPTA 205
Query: 174 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL 232
GLD +++ I N V + ++ D++I++ +I+ G P E+
Sbjct: 206 GLDPKGEHEMMQLILDAKA--NNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
Query: 233 VLD 235
D
Sbjct: 264 FTD 266
|
Length = 320 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 41/232 (17%)
Query: 672 PFEPHSLTFDEV-------TYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGV 724
P EPH + D + + V P ++ + VS + R G + + G+
Sbjct: 247 PHEPHEIG-DVILEARNLTCWDVINPHRKRV-----------DDVSFSLRRGEILGVAGL 294
Query: 725 SGAGKTTLMDVLAGRKTGGYITGNITISGYP-----KKQETFTRISGYCEQNDIHS--PF 777
GAG+T L+ L G G + GN+ I+G P Q I+ E H P
Sbjct: 295 VGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL------VELNPLRQSLVGLPGESGLS 831
+ V +++ S + S KM I+ EL ++ ++ + LP LS
Sbjct: 354 LGVGKNITLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLS 405
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
+++ +A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGY 767
G G + ++G +G GKTT + +LAG + G ++ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
TV + L + S F EI++ + L L + V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 45/249 (18%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYI---SQHDVH 58
T ++GP GK+TLL L+ + G V +G + + + A I +Q+
Sbjct: 36 TAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
G++TV+E +A RY R KE D + A T+ +A
Sbjct: 93 PGDITVQELVA--------RGRYPHQPLFTRWRKE-----DEE-------AVTKAMQATG 132
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+T + D+ V +SGGQ++R ++ + +DE +T LD S
Sbjct: 133 ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177
Query: 179 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVL-DF 236
++ + + ++ G + ++L + +I L + +IV QG P+E+V +
Sbjct: 178 HQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAEL 236
Query: 237 FESM-GFKC 244
E + G +C
Sbjct: 237 IERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGYCEQNDI 773
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 774 HSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIE--EIMELVELNPL-RQSLVGLPGE 827
P++ TV E++ + + + + K + + ++L P Q+ +G G
Sbjct: 86 QKPWLLNATVEENITFGS------PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 885
+ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 886 IHQ 888
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 46/187 (24%), Positives = 74/187 (39%), Gaps = 55/187 (29%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQ 770
+TA +G SG GK+T + D + K + G + I G I Y
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDG----------IDVYSVD 78
Query: 771 NDI-------------HSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
++ +PF ++Y+++ Y P K ++EI+E
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-----PKLHGLAKNKKKLDEIVE----KS 129
Query: 817 LRQSLVGLPGESG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
L VGL E G LS Q++RL IA + P+++ MDEP S LD A +
Sbjct: 130 LTS--VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV 187
Query: 868 VMRTVRN 874
+ ++
Sbjct: 188 IENLIQE 194
|
Length = 251 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 48/180 (26%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNITISGYPKKQETF 761
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 762 TRISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPPEVDSETQKMFIEEIMELVE 813
R I F Y SL + L + + + ++ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV- 141
Query: 814 LNPLRQSLVGLPGESGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 861
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ---------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYC 768
VS + G A++G +GAGKTTL+++L ++ G I I G T TR
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGI--DINTVTR----- 404
Query: 769 EQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETQKMFIEEIMELVE-------LNPLRQS 820
+ TV++ L++ +R + E EE+ E + +
Sbjct: 405 --ESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNG 460
Query: 821 LVGLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
L GE G LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 461 YDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAIDA 516
Query: 879 ---GRTVVCTIHQPS 890
RT H+ S
Sbjct: 517 LRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.001
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFTRI 764
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 765 SGYCE----------QNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
E QN P ++V E++ Y +R P+ + E + + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 815 NPL-----RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 867
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 868 VMR 870
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFT 762
L+ V+ G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 763 RISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+ G Q + F T+ + + + + E + ++ M +V
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFG--PINLGLSEEEIENR-VKRAMNIV--------- 130
Query: 822 VGLPGES-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
GL E LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 131 -GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--------- 753
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 754 ----YPKKQETFTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFI 805
P ++ ++ G Q+ P TV +++ + L L ++E + M
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM-- 128
Query: 806 EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
EL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 129 ----ELLDMVGLADKADHMPAQ--LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 866 AIVMRTVRN-TVDTGRTVVCTIHQ 888
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 62/280 (22%)
Query: 650 QLLSQREVTVGAIQ--PKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLN 707
LS E+ +I+ K G H+ TF T++ D+P LN
Sbjct: 612 IFLSHEELEPDSIERRTIKPGEGNSITVHNATF---TWARDLPPT-------------LN 655
Query: 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFTRIS 765
G++ + G L A++G G GK++L+ L K G++ +++ P++
Sbjct: 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI----- 710
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
QND ++ E++L+ L + + ++++E L P L LP
Sbjct: 711 ----QND------SLRENILFGKAL----------NEKYYQQVLEACALLP---DLEILP 747
Query: 826 -------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT- 875
GE G LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 748 SGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE 807
Query: 876 -VDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914
V +T + H I D + +M GG+ +G
Sbjct: 808 GVLKNKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 52/179 (29%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA------YISQHDV 57
LLGP +GK+T+ L G + G++T + E VP R + Q D
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSRARLARVAIGVVPQFDN 87
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
E TVRE L R G ++ RE EA I
Sbjct: 88 LDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS------------------- 118
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L+ LE D V +SGG K+R+T ++ L +DE +TGLD
Sbjct: 119 -----LLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 59/244 (24%), Positives = 89/244 (36%), Gaps = 64/244 (26%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH-----GMDEFVP--QRTAAYISQ 54
T L GP SGKT+L+ +AG GR+ NG F+P +R Y+ Q
Sbjct: 27 TALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
TVR L Y + Q
Sbjct: 84 DARLFPHYTVRGNLR-----------------------------------YGMWKSMRAQ 108
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMDEIST 173
D + +LG+E L+ D +SGG+K+RV G ++ P L L MDE
Sbjct: 109 -----FDQLVALLGIE----HLL-DRYPGTLSGGEKQRVAIGRALLTAPEL-LLMDEPLA 157
Query: 174 GLDSSTTFQI---VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230
LD +I + +R I+I ++ + E L D +++L + ++ GP
Sbjct: 158 SLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVKASGPL 213
Query: 231 ELVL 234
E V
Sbjct: 214 EEVW 217
|
Length = 352 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 30/214 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNITISGYPKKQ 758
LN +S + G TAL+G +G+GK+T+ ++ G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 759 ETFTRIS---GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
+T I G QN + FV TV + + + R P E K+ + +++ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRAVPR--PEMIKI-VRDVLADVG 132
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+ S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 874 N-TVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
TV+ H ID D++ ++ G
Sbjct: 188 KLKKKNNLTVISITH--DIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL 202
R +SGG+K+RV + DE + LD T + N++ + + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 203 LQPAPETY-DLFDDIILLSDAQIVYQG-PRELVLDFFESMGFKCPERKGVADFLQEVTSR 260
PE DL D I L + +I +G P E+V F E G E++ + + +
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKV 282
Query: 261 KDQQQYWV 268
++ + ++
Sbjct: 283 RNVSKRYI 290
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 145 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 204
+SGGQK+RV ++ L +DE + GLD +I+N I + +H +I +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKI-KELHKEYNMTIILVSH 203
Query: 205 PAPETYDLFDDIILLSDAQIVYQG-PRELV--LDFFESMGFKCPE 246
+ L D II+++ + QG PRE+ ++ ES+G P+
Sbjct: 204 SMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 54/217 (24%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L +S +F PG ++G++GAGK+TL+ ++AG +G +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFNGEARPAPGIKV- 70
Query: 765 SGYCEQNDIHSPFVTVYE-------------------SLLYSAWLRLPPEVDSETQKMF- 804
GY Q P TV E S ++ E D++ +
Sbjct: 71 -GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA-------EPDADMDALLA 122
Query: 805 ----IEEIMELVEL----NPLRQSLVGL---PGE---SGLSTEQRKRLTIAVELVANPSI 850
++EI++ + L ++ L P + + LS +R+R+ + L++ P +
Sbjct: 123 EQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDM 182
Query: 851 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
+ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.002
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 888
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 889 PSIDIFESFDELFLMKRGGQE 909
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---------YPK 756
+ G+S +TA++G SG GK+T + L + G + + G Y
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDP 79
Query: 757 KQET--FTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIME-LV 812
+ R G Q +PF +++YE++ Y + ++ + ++EI+E +
Sbjct: 80 RININRLRRQIGMVFQRP--NPFPMSIYENVAYGV------RISAKLPQADLDEIVESAL 131
Query: 813 ELNPLRQSLVGLPGES--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+ L Q + +S GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 132 KGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQ 54
+ +LGP +GK+TLL LAG L SG + +G + P+ R AY+ Q
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 69/258 (26%), Positives = 90/258 (34%), Gaps = 92/258 (35%)
Query: 4 LLGPPCSGKTTLL---LALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH----D 56
LLGP +GKTTLL L L +K +G G +VPQR H D
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-------HEFAWD 63
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
I +V T+ S R +G RR A D A
Sbjct: 64 FPI---SVAHTV-MSGRTGHIG--------WLRRPCVA--------DFAAVRDA------ 97
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEI 171
L+ +GL D VG+ +SGGQ++RV +V ALA L +DE
Sbjct: 98 -------LRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSVLLLDEP 140
Query: 172 STGLDSSTTFQIV----------NSIRQNIH-------------ILNGTAVIS-----LL 203
TGLD T + +I H +LNG + L
Sbjct: 141 FTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
Query: 204 QPAP--ETYDLFDDIILL 219
PAP T+ + D LL
Sbjct: 201 DPAPWMTTFGVSDSSPLL 218
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 66/241 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHI- 59
M LLGP GKTT+L +AG L+ G++ +G E V R+ I Q D+ +
Sbjct: 34 MVTLLGPSGCGKTTVLRLVAG-LEKPT--EGQIFIDG----EDVTHRS---IQQRDICMV 83
Query: 60 -------GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATE 112
M++ E + + + GV E +R KEA
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA------------------ 120
Query: 113 GQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEI 171
LE+ D D V ISGGQ++RV ++ P + LF DE
Sbjct: 121 ----------------LELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF-DEP 163
Query: 172 STGLDSSTTFQIVNSIRQNIHILNGTAVISLL---QPAPETYDLFDDIILLSDAQIVYQG 228
+ LD++ + S+R+ I L I+ L E + + D +I+++ +I+ G
Sbjct: 164 LSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
Query: 229 P 229
Sbjct: 220 S 220
|
Length = 351 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 54/248 (21%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDVH 58
T ++G SGK+TL L G ++ SG + NG + + ++ Y+ Q + +
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQ-EPY 558
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
I ++ E L A+ D + A IK D I+ TE E
Sbjct: 559 IFSGSILENLLLGAK---ENVSQDEIWAACEI---AEIKDD--IENMPLGYQTELSEEGS 610
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
ISGGQK+R+ ++ + L +DE ++ LD+
Sbjct: 611 -------------------------SISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645
Query: 179 TTFQIVNSIRQNIHILNGTAVISL---LQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
T +IVN N+ L +I + L A ++ D II+L +I+ QG + +LD
Sbjct: 646 TEKKIVN----NLLNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKIIEQGSHDELLD 697
Query: 236 ---FFESM 240
F+ S+
Sbjct: 698 RNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 32/161 (19%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GNITISGYPKKQETFTRISGYC 768
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 769 EQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV----- 822
Q +PF ++Y+++ Y ++ M ELVE LRQ+ +
Sbjct: 97 FQKP--NPFPKSIYDNIAYG------ARINGYKGDM-----DELVE-RSLRQAALWDEVK 142
Query: 823 GLPGESGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLD 861
+SGLS Q++RL IA + P +I MDEP S LD
Sbjct: 143 DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETF 761
+LN +S + R G + G SG GK+TL+ ++A +G + IS E +
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EIY 79
Query: 762 TRISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL-VELNPL 817
+ YC Q +P + TVY++L++ +R +F++++ + L
Sbjct: 80 RQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERFALPDTIL 131
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+++ + LS +++R+++ L P ++ +DE TS LD
Sbjct: 132 TKNI------AELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 56/240 (23%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIG 60
++GP SGK+TL L G SG V +G + ++ + R Y+ Q DV +
Sbjct: 367 IIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELF 422
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+ T+ E +A R+ + D + ++AA L
Sbjct: 423 DGTIAENIA----------RFG---------------EEADPEKVIEAA--------RLA 449
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSST 179
+ +L L DT +G+ +SGGQ++R+ + G P L + +DE ++ LDS
Sbjct: 450 GVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL-VVLDEPNSNLDSEG 507
Query: 180 TFQIVNSIRQNIHILNGTAVI-----SLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
+ +I GT V+ S L D I++L D +I GPRE VL
Sbjct: 508 EAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 56/251 (22%), Positives = 95/251 (37%), Gaps = 65/251 (25%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHG--------MDEFVPQRTA----AY 51
++G SGK+TLL LAG+L G TY + E +R +
Sbjct: 34 IVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGF 90
Query: 52 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAAT 111
+ Q+ M V R +G+R+ Y AT
Sbjct: 91 VHQNPRDGLRMRVSAGANIGERLMAIGARH-----------------------YGNIRAT 127
Query: 112 EGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDE 170
D+ +V E+ + D++ R SGG ++R+ +V P L +FMDE
Sbjct: 128 AQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLVTRPRL-VFMDE 174
Query: 171 ISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDIILLSDAQI 224
+ GLD S ++++ +R + L +I T+D L ++++ ++
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARLLAQRLLVMQQGRV 227
Query: 225 VYQGPRELVLD 235
V G + VLD
Sbjct: 228 VESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 24/199 (12%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-----GNITISGY 754
+L +L VS + G L G SG+GK+TL+ L G I + +
Sbjct: 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82
Query: 755 PKKQ--ETFTRISGYCEQNDIHSPFVT----VYESLLYSAWLRLPPEVDSETQKMFIEEI 808
++ E GY Q P V+ V E LL P EV
Sbjct: 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV---PREVARAKAADL---- 135
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
L LN L + L L + S +++R+ IA + + I+ +DEPT+ LDA A+V
Sbjct: 136 --LTRLN-LPERLWSLA-PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 869 MRTVRNTVDTGRTVVCTIH 887
+ +R G +V H
Sbjct: 192 VELIREAKARGAALVGIFH 210
|
Length = 235 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1275 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.98 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.98 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.98 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.98 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.98 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.98 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.98 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.98 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.98 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.98 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.98 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.98 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.98 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.98 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.98 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.98 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.98 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.98 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.98 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.98 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.98 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.98 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.98 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.98 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.97 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.97 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.97 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.97 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.97 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.97 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.97 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.97 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.97 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.97 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.97 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.97 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.97 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.97 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.97 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.97 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.97 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.97 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.97 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.97 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.97 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.97 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.97 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-198 Score=1796.24 Aligned_cols=1209 Identities=54% Similarity=0.919 Sum_probs=1108.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
|+.++||+||||||||++|+|..+......|+|.+||++.++...++.++|++|+|.|+|.+||||++.|+++|++++.|
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 58999999999999999999999876566889999999999888889999999999999999999999999999999888
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
++ +..++++.. .+.|.+++.+||.+|+||.||++.+||+||||||||++|++++
T Consensus 223 ~~---~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 223 YD---EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cc---cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 76 344443321 2578899999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHHHhC
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f~~~ 240 (1275)
++++++++||+|+|||+.++.++++.++++++..+.+.+++++|++++++++||+|++|++|+++|+||.+++++||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhcCCcccCCCCCcccccccccc
Q 000808 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGV 320 (1275)
Q Consensus 241 G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1275)
||.||+++++|||++++++..++.++|.+...+....+..|+.+.+.+++.+.++..+++.+.++.+.++.+...+.|..
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 99999999999999999998888888888888887788899999999999999999999998888888888888999999
Q ss_pred CHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCccceehHHHHHHHHHHHhhhHHHHHH
Q 000808 321 GKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMT 400 (1275)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~ 400 (1275)
+.++|++.+..|.+..++||..++.++..+.++++++.|++|++.++ .+..+...+.|++||++++.++++++++..+
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999884 4456677889999999999999999999999
Q ss_pred hhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000808 401 IAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480 (1275)
Q Consensus 401 ~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l~~~l~~~~~~~l~~~i~~ 480 (1275)
++.+|+++|||+..+|.+|++.++.++.++|++++..++|.+|+||++|+.+++++||.+|+.+++.+++++++++++++
T Consensus 515 ~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~ 594 (1391)
T KOG0065|consen 515 FQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIAS 594 (1391)
T ss_pred HhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCCccccccC------------C
Q 000808 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTS------------N 548 (1275)
Q Consensus 481 ~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~~~------------~ 548 (1275)
+++++.+|+.++++.++++.+++||+++..+||+||+|++|++|+.|++++++.|||+++.+.|.+. .
T Consensus 595 l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~ 674 (1391)
T KOG0065|consen 595 LSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKV 674 (1391)
T ss_pred hcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988732 1
Q ss_pred ---CcccchHHHhhhcCcc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeccCCcccccCCcCCC
Q 000808 549 ---SNETLGVQVLKSRGFF-----PHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGG 620 (1275)
Q Consensus 549 ---~~~~~g~~~l~~~~~~-----~~~~~~w~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1275)
.....|.+++...++. ....|+|+++++++|+.++|++++.+++.+++...+.+.+........+.....
T Consensus 675 c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~-- 752 (1391)
T KOG0065|consen 675 CAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS-- 752 (1391)
T ss_pred chhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh--
Confidence 1355688888887776 677899999999999999999999999999998877766554332111100000
Q ss_pred CcccccCCCCCCCCCCCCcccccccchhhhhcccccccccccCccCCCcccCCCCcEEEEEeEEEEEeccchhhhccccc
Q 000808 621 TAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILE 700 (1275)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1275)
+... .. . .... ......+.++..|..+..++++||.+-++++-+.+.++
T Consensus 753 ---------~~~~------~~---~----~~~~------~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG--- 801 (1391)
T KOG0065|consen 753 ---------AGSS------SE---I----EKLD------DSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG--- 801 (1391)
T ss_pred ---------cccc------cc---c----cccc------cccccccccccCCCccccccccceEEEEeCCccccccc---
Confidence 0000 00 0 0000 00001234555666677888888888877776555443
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 780 (1275)
+++++|+|||+.++||.++||||+||||||||||+|+||...|.++|+|.+||.|.++..++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 67889999999999999999999999999999999999999999999999999999878899999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCC
Q 000808 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP-SIIFMDEPTSG 859 (1275)
Q Consensus 781 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p-~illlDEPtsg 859 (1275)
||.|.|+|.||+|.+.+.+++.+.|+++++.|+|.+++|.+||.++ +|||.+||||++||.+|+.|| .||||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCccchHHHHHHhcCCCcccCCCCC
Q 000808 860 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGY 939 (1275)
Q Consensus 860 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~ 939 (1275)
||+.++..|++++|+++++|+||+||+||||.++++.||++++|++||++||+||.+++++.+++||+++++. +|++..
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~ 1039 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDE 1039 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 577667
Q ss_pred CCccchhhhccccccchhhhhHHHHhhccHHHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCcHHHHHHHHHHHHHHHhhc
Q 000808 940 NPATWMLEVTAKSQELTLEIDFTDIYKGSELYRRNKALIEELSRPAPG-SKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 1018 (1275)
Q Consensus 940 npad~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R 1018 (1275)
|||||++|+++...+.....||++.|++|++++++++.+++++.+.++ ..+..++++|++|+|.|++.++||+++.+||
T Consensus 1040 NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWR 1119 (1391)
T KOG0065|consen 1040 NPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWR 1119 (1391)
T ss_pred ChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhC
Confidence 999999999998877777889999999999999999999999998887 6667777889999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhhHHHHhHccCCCCCh
Q 000808 1019 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSA 1098 (1275)
Q Consensus 1019 ~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~ 1098 (1275)
+|.++++|++..++.|+++|++||++|+ +.++++|.+|++|+++++.+..+.....+.+..||.+++||+++|+||+
T Consensus 1120 sp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~ 1196 (1391)
T KOG0065|consen 1120 SPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSW 1196 (1391)
T ss_pred CcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccH
Confidence 9999999999999999999999999995 5889999999999999999887776677778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000808 1099 MPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGL 1178 (1275)
Q Consensus 1099 ~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1178 (1275)
.+|++|++++|+|+.++++++|.+|+|+++||.+++.+|++|++.+++..++.+.+|+|+.+++||.++|++++++++++
T Consensus 1197 ~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~ 1276 (1391)
T KOG0065|consen 1197 TPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSF 1276 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcCCCCccchhhHHhhhchHHHHHHHHHHHhhCCcccccC----------CCCcHHHHHHhhcC----CCCcc
Q 000808 1179 WNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME----------SGETVKQFVRSYFD----FKHDF 1244 (1275)
Q Consensus 1179 ~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~f~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~ 1244 (1275)
+.+||||++|++.||.||+|+||+||++|.+++++..+++|.+..|. +|.++++|+.+++| +.++.
T Consensus 1277 ~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~ 1356 (1391)
T KOG0065|consen 1277 WNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNP 1356 (1391)
T ss_pred HHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccC
Confidence 99999999999999999999999999999999999999999998884 34489999999999 87777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 000808 1245 LGVVAVVVAAFAVLFGVLFAVGIKRFNFQNR 1275 (1275)
Q Consensus 1245 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~r 1275 (1275)
.....++.+++.+++.++..+.++|.|+++|
T Consensus 1357 ~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1357 LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 7777888889999999999999999999886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-190 Score=1868.03 Aligned_cols=1272 Identities=61% Similarity=1.070 Sum_probs=1086.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+|||||||||||++|+|+++|+.+.+|+|.+||+++++...++.++||+|+|.+++++||+||+.|++++++.+.+
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999886567999999999887665677899999999999999999999999998876555
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
++...+..+++++....++.+.+.+++++..+..+.+..++.+++.+||+++.||.||++.+++|||||||||+||++|+
T Consensus 273 ~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~ 352 (1470)
T PLN03140 273 YDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIV 352 (1470)
T ss_pred ccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhc
Confidence 44433444555544444445555555555555555566788999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHHHhC
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f~~~ 240 (1275)
++|+++||||||+|||+.++.++++.|+++++..+.|+|+++||+.++++++||+|++|++|+++|+|+.+++.+||+++
T Consensus 353 ~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~l 432 (1470)
T PLN03140 353 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432 (1470)
T ss_pred CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHc
Confidence 99999999999999999999999999999877556788888889999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhcCCcccCCCCCcccccccccc
Q 000808 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGV 320 (1275)
Q Consensus 241 G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1275)
||+||++.|+|||++++++..+++++|.....|.+..+.+++.+.|+++..+++..+++..+.++...++.....+.+..
T Consensus 433 Gf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred CCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 99999999999999999988766566544445555578899999999988877766665544433333333334456888
Q ss_pred CHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCccceehHHHHHHHHHHHhhhHHHHHH
Q 000808 321 GKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMT 400 (1275)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~ 400 (1275)
+.++|++.+++|+++.++||+..+..+.++.+++++++|++|++.+.+.....++..+.|++||++++.++++++.+..+
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999876544444556778999999999999999999999
Q ss_pred hhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000808 401 IAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480 (1275)
Q Consensus 401 ~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l~~~l~~~~~~~l~~~i~~ 480 (1275)
+.++|+|+|||+.++|++++|++++++.++|+.++++++|++++|||+||++++++||.++++.++..++++++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCCccccc-cCCCcccchHHHhh
Q 000808 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKF-TSNSNETLGVQVLK 559 (1275)
Q Consensus 481 ~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~-~~~~~~~~g~~~l~ 559 (1275)
+++++.+|+.+++++++++++|+||+++.++||.||+|++|+||+.|++++++.|||.+..+.+. +.......|.++|.
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~ 752 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN 752 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776532 22234567999999
Q ss_pred hcCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeccCCcccccCCcCCCCcccccCCCCCCCCCCCCc
Q 000808 560 SRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSES 639 (1275)
Q Consensus 560 ~~~~~~~~~~~w~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1275)
.+++...+.|+|.+++++++++++|.+++++++++.+................................... .......
T Consensus 753 ~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 831 (1470)
T PLN03140 753 IFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNN-TREVAIQ 831 (1470)
T ss_pred hcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccccc-ccccccc
Confidence 999998888999999999999999999999999998755444333211100000000000000000000000 0000000
Q ss_pred ccccccchhhhhcccccccccccCccCCCcccCCCCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEE
Q 000808 640 EDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719 (1275)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 719 (1275)
... ..+.... ..............+.++..|..|..++|+|++|.++.+.+.+..+...+++.+|+|||++++|||++
T Consensus 832 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~ 909 (1470)
T PLN03140 832 RMS-NPEGLSK-NRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLT 909 (1470)
T ss_pred ccc-ccccccc-ccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEE
Confidence 000 0000000 00000000000112234456777889999999999987654333333345567999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHH
Q 000808 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE 799 (1275)
Q Consensus 720 ~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~ 799 (1275)
||+||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+|++.|++.++.+...+.+
T Consensus 910 aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~ 989 (1470)
T PLN03140 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKE 989 (1470)
T ss_pred EEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHH
Confidence 99999999999999999999876678999999998865445567799999999999999999999999988876666666
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q 000808 800 TQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879 (1275)
Q Consensus 800 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g 879 (1275)
+++++++++++.+||.+++|+.+|.++.++|||||||||+||++|+.+|++|||||||||||+.++..+++.|++++++|
T Consensus 990 ~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g 1069 (1470)
T PLN03140 990 EKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1069 (1470)
T ss_pred HHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 67788999999999999999999988778999999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCccchHHHHHHhcCCCcccCCCCCCCccchhhhccccccchhhh
Q 000808 880 RTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEI 959 (1275)
Q Consensus 880 ~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~~~~~~~~~~~~~ 959 (1275)
+|||+++|||+.++++.||++++|++||+++|+||.+++++++++||+++++.+.||+++|||||++|+++...+.....
T Consensus 1070 ~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~ 1149 (1470)
T PLN03140 1070 RTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI 1149 (1470)
T ss_pred CEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccc
Confidence 99999999999778999999999998899999999988888999999998776679999999999999987655544456
Q ss_pred hHHHHhhccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 000808 960 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGT 1039 (1275)
Q Consensus 960 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~ 1039 (1275)
|+++.|+.|+.+++.++.++++..+.+..++..++++|++++|+|++.|++|+++++||||.++.+|+++++++|+++|+
T Consensus 1150 d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~ 1229 (1470)
T PLN03140 1150 DFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGT 1229 (1470)
T ss_pred hHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 89999999999988877777776655444444455678999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCchhhHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhhHHHHhHccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000808 1040 MFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSV 1119 (1275)
Q Consensus 1040 ~f~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~ 1119 (1275)
+||+++++..+.+++++++|++|++++++++.++++++|.|..||++|+||+++|+|++.+|++|++++|+|+.++.+++
T Consensus 1230 ~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~i 1309 (1470)
T PLN03140 1230 IFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTY 1309 (1470)
T ss_pred HhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987767789999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred HhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcCCCCccchhhHH
Q 000808 1120 YGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1199 (1275)
Q Consensus 1120 ~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~ 1199 (1275)
|++|+|||+||++++++||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+||++|+++||+||+|+
T Consensus 1310 f~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~ 1389 (1470)
T PLN03140 1310 YTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWY 1389 (1470)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHhhCCcccccC--C---CCcHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 000808 1200 YWANPVAWTMYGLVASQFGDVEDKME--S---GETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNFQN 1274 (1275)
Q Consensus 1200 ~~~sp~~y~~~~l~~~~f~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 1274 (1275)
+|+||++|+++|++.|||+|.+..|+ . ++++.+|+++.|||+++++|++++++++|+++|+++.+++++++||||
T Consensus 1390 ~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1390 YWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred HHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999887654 2 246789999999999999999999999999999999999999999999
Q ss_pred C
Q 000808 1275 R 1275 (1275)
Q Consensus 1275 r 1275 (1275)
|
T Consensus 1470 r 1470 (1470)
T PLN03140 1470 R 1470 (1470)
T ss_pred C
Confidence 8
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-167 Score=1661.94 Aligned_cols=1207 Identities=31% Similarity=0.539 Sum_probs=981.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC-CceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSK-LKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~-~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++. ..++.++||+|+|.+++.+||+||+.|+++++.+
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999997421 12599999999887532 2345699999999999999999999999876542
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
..+.+ ...+.+ ..+..++.+++.+||+++.||.||++.+++|||||||||+||+
T Consensus 169 ~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~ 222 (1394)
T TIGR00956 169 QNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAE 222 (1394)
T ss_pred CCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHH
Confidence 21100 000000 0112346689999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f 237 (1275)
+|+.+|++++|||||+|||+.++.++++.|+++++..+.++|+++||+++++.++||+|++|++|+++++|+++++.+||
T Consensus 223 aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF 302 (1394)
T TIGR00956 223 ASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302 (1394)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999876556788888888899999999999999999999999999999999
Q ss_pred HhCCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhcCCcccC-----------
Q 000808 238 ESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKC----------- 306 (1275)
Q Consensus 238 ~~~G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 306 (1275)
+++||+||++.|++||+.++++..++. .+.. .......+.+++.+.|++++.+++..++.+...+..
T Consensus 303 ~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1394)
T TIGR00956 303 EKMGFKCPDRQTTADFLTSLTSPAERQ-IKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE 380 (1394)
T ss_pred HHcCCCCCCCCChHHHHHhccChhhhh-cccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH
Confidence 999999999999999999998765422 1111 011123467889999988876655444332211000
Q ss_pred ----CCCCccccccccccCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCccceehHH
Q 000808 307 ----KSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGAT 382 (1275)
Q Consensus 307 ----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~~g~~ 382 (1275)
+..........+..+.++|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+...+.|++
T Consensus 381 ~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~~~~r~g~l 457 (1394)
T TIGR00956 381 SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SDFYSRGGAL 457 (1394)
T ss_pred HHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHH
Confidence 000011123356788999999999999999999999999999999999999999999987533 3345678999
Q ss_pred HHHHHHHHHhhhHHHHHHhhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHH
Q 000808 383 FFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFL 462 (1275)
Q Consensus 383 f~~i~~~~~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l 462 (1275)
|+++++..+.++..+...+.+|++++|||..++|++++|++++.++++|+.++.+++|++|+|||+||++++++|+.+++
T Consensus 458 f~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l 537 (1394)
T TIGR00956 458 FFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLL 537 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHH
Confidence 99999988888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCCcc
Q 000808 463 LLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSW 542 (1275)
Q Consensus 463 ~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~ 542 (1275)
+.++...++++++.+++++++++.+|+.+++++++++++|+||+++.++||.||+|++|+||+.|++++++.|||.+..+
T Consensus 538 ~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~ 617 (1394)
T TIGR00956 538 ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRF 617 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccc---cC----------C-C----------cccchHHHhhhcCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000808 543 RKF---TS----------N-S----------NETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598 (1275)
Q Consensus 543 ~~~---~~----------~-~----------~~~~g~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~i~~~~~l~~~~~~ 598 (1275)
.|. +. + . ....|.++|.. ++.....|.|.+++++++++++|.+++++++.+.+..
T Consensus 618 ~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 618 ECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred cccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 774 11 0 0 13467888884 3333456789999999999999999999999987744
Q ss_pred CCCcceeccCCcccccCCcCCCCcccccCCCCCCCCCCCCcccccccchhhhhcccccccccccCccCCCcccCCCCcEE
Q 000808 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSL 678 (1275)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1275)
................. .+... ..+......+..... .......+ ...... ......+.....+
T Consensus 697 ~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~e~~~~~-~~~~~~~~----~~~~~~-~~~~~~~~~~~~l 760 (1394)
T TIGR00956 697 KQKGEILVFRRGSLKRA------KKAGE----TSASNKNDIEAGEVL-GSTDLTDE----SDDVND-EKDMEKESGEDIF 760 (1394)
T ss_pred CCCCceEeeccccccch------hhccc----ccccccccccccccC-CCCccccc----cccccc-cccccccCCCceE
Confidence 33222211111000000 00000 000000000000000 00000000 000000 0000000112358
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-eEEEEEEEcCccCC
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKK 757 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~ 757 (1275)
+|+|++|+++.+ ++++.+|+|||++++|||++||+||||||||||||+|+|+.+++ +.+|+|.+||.+..
T Consensus 761 ~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 761 HWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831 (1394)
T ss_pred EEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 999999987421 13457999999999999999999999999999999999987644 35699999999875
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
. .+++.+|||+|+|.+++.+||+|++.|++.++.+...++++++++++++++.+||.+++|+.+|.++. +||||||||
T Consensus 832 ~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqR 909 (1394)
T TIGR00956 832 S-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKR 909 (1394)
T ss_pred h-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhH
Confidence 3 46778999999999999999999999999888766566667778899999999999999999986543 899999999
Q ss_pred HHHHHHHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 838 LTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 838 v~ia~~l~~~p~-illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
++||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++||+++|+|+++
T Consensus 910 l~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999999999997 9999999999999999999999999988899999999999977788999999999888999999998
Q ss_pred ccchHHHHHHhcCCCcccCCCCCCCccchhhhccccccchhhhhHHHHhhccHHHHHHHHHHHHhcCCCCCC---CCCCC
Q 000808 917 RHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGS---KDLYF 993 (1275)
Q Consensus 917 ~~~~~~~~~f~~~~~~~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~ 993 (1275)
+.++++++||+++| .++||+++|||||++|+++...+.....++.+.|+.|+.+++..+.++....+.... .+...
T Consensus 990 ~~~~~~~~yf~~~G-~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1394)
T TIGR00956 990 ENSHTIINYFEKHG-APKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDA 1068 (1394)
T ss_pred cccchHHHHHHhcC-CCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccccc
Confidence 88889999999875 347999999999999998765443334578999999988776655554443321111 11112
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHhHHHHHHHHHHHHHh
Q 000808 994 PTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYC 1073 (1275)
Q Consensus 994 ~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~ 1073 (1275)
..++++|||+|+++|++|+++++||||.++++|+++++++|+++|++||+++++ .+++++++|++|+++++.++..
T Consensus 1069 ~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~i~~~~g~~f~~~~~~~~~~- 1144 (1394)
T TIGR00956 1069 LSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFAVFMATVLFNPLI- 1144 (1394)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHH-
Confidence 246889999999999999999999999999999999999999999999999874 6789999999999888777653
Q ss_pred hhhhhhHHHhhHHH-HhHccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH-------HHHHHHHHH
Q 000808 1074 SSVQPVVAVERAVF-CREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAK-------FFWYLFFMF 1145 (1275)
Q Consensus 1074 ~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~ 1145 (1275)
..++|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|+++++
T Consensus 1145 ~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~ 1224 (1394)
T TIGR00956 1145 QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLST 1224 (1394)
T ss_pred HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHH
Confidence 45567888888885 8999999999999999999999999999999999999999999988765 999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcCCCCccchhhHHhhhchHHHHHHHHHHHhhCCcccccC
Q 000808 1146 FSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME 1225 (1275)
Q Consensus 1146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~f~~~~~~~~ 1225 (1275)
+..++++++|+++++++|+..+|+.+++++++++++||||++++++||.||+|++|+||++|+++|++.|||++.+..|.
T Consensus 1225 ~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~ 1304 (1394)
T TIGR00956 1225 MFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCK 1304 (1394)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887774
Q ss_pred C----------CCcHHHH-------------------------------HHhhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 000808 1226 S----------GETVKQF-------------------------------VRSYFDFKHDFLGVVAVVVAAFAVLFGVLFA 1264 (1275)
Q Consensus 1226 ~----------~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1264 (1275)
. |.+|++| .+..+|++.++.|+|++++++|++++ ++++
T Consensus 1305 ~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~ 1383 (1394)
T TIGR00956 1305 VKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIAT 1383 (1394)
T ss_pred ccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHH
Confidence 2 2233322 23466888889999999999999988 7778
Q ss_pred HHHhhccc
Q 000808 1265 VGIKRFNF 1272 (1275)
Q Consensus 1265 ~~l~~~~~ 1272 (1275)
+++.+...
T Consensus 1384 ~~l~~~~r 1391 (1394)
T TIGR00956 1384 VFFYWLAR 1391 (1394)
T ss_pred HhhheEEE
Confidence 88877643
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-96 Score=897.10 Aligned_cols=576 Identities=31% Similarity=0.543 Sum_probs=503.1
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-eEEEEEEEcC
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISG 753 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~~~G~i~~~g 753 (1275)
+..+.|+|++++.+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+..++ ..+|+|++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 567999999988753321 3578999999999999999999999999999999999998764 6899999999
Q ss_pred ccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 754 YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 754 ~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
++...+.+++.+|||+|||.++|++||+|++.|+|.+|+|.+.++++++++|+++++.+||.+++|+++|++..||+|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88877788999999999999999999999999999999999888999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|||||+||.+|++||+||||||||||||+.++.+++++|+++|++|+|||+|+|||+.+++++||++++|++ |+++|+|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 6999999
Q ss_pred CCCccchHHHHHHhcCCCcccCCCCCCCccchhhhcccc-ccchhhhhHHHHhhc------cHHHHHHHH-HHHHhcCCC
Q 000808 914 PLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKS-QELTLEIDFTDIYKG------SELYRRNKA-LIEELSRPA 985 (1275)
Q Consensus 914 ~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~~~~~~-~~~~~~~~~~~~~~~------s~~~~~~~~-~~~~~~~~~ 985 (1275)
++ +++.+||+++|. +||+++||+||++|+++.. .... ..+..+.++. .....+... ........
T Consensus 254 ~~----~~~~~ff~~~G~--~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (613)
T KOG0061|consen 254 SP----RELLEFFSSLGF--PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS- 325 (613)
T ss_pred CH----HHHHHHHHhCCC--CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHHHHhhhcccc-
Confidence 98 678999999963 5999999999999998853 1111 0111111111 111011000 00011100
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHhHHHHHH
Q 000808 986 PGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAV 1065 (1275)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~lf~~~ 1065 (1275)
.+ .+.....+||.|++.+++|.+++.+|||.+...|+++.+.+|+++|++||+++++ ..+++++.|++|+.+
T Consensus 326 ---~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 326 ---KK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFIL 397 (613)
T ss_pred ---cc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHH
Confidence 00 1111268999999999999999999999999999999999999999999999765 445668999999999
Q ss_pred HHHHHHHhhhhhhhHHHhhHHHHhHccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHH
Q 000808 1066 FFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMF 1145 (1275)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~ 1145 (1275)
.++.+..+.+.++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|++++..+|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99888888877899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcCCCCccchhhHHhhhchHHHHHHHHHHHhhCCcccccC
Q 000808 1146 FSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME 1225 (1275)
Q Consensus 1146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~f~~~~~~~~ 1225 (1275)
+..++++++|++++++.|+...|..+++++++.+++|+||+++.++||+||+|++|+|+++|++||++.|||.+....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997334442
Q ss_pred C-----CCcHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 000808 1226 S-----GETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNFQNR 1275 (1275)
Q Consensus 1226 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~r 1275 (1275)
. ....++.++...+++..+.|.|+.+++++.++|+++++++|++....+|
T Consensus 558 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 558 LSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 1 1122444556889999999999999999999999999999998776654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-94 Score=889.69 Aligned_cols=580 Identities=24% Similarity=0.396 Sum_probs=481.4
Q ss_pred CcEEEEEeEEEEEeccchh----------------hhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHC
Q 000808 675 PHSLTFDEVTYSVDMPKEM----------------KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g 738 (1275)
+..++|.+++|+++..... +...+..+++.+|+|||++++|||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999988644200 000112245679999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 000808 739 RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818 (1275)
Q Consensus 739 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 818 (1275)
+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 876444689999999886532 3456899999999999999999999998877665555666677899999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhh
Q 000808 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898 (1275)
Q Consensus 819 ~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 898 (1275)
|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.+|
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999877889999999999999999999999999999999999999999999999988899999999999977899999
Q ss_pred hhheeecCcEEEEECCCCccchHHHHHHhcCCCcccCCCCCCCccchhhhccccccch---------hhhhHHHHhhccH
Q 000808 899 ELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQELT---------LEIDFTDIYKGSE 969 (1275)
Q Consensus 899 ~~~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~~~~~~~~~~---------~~~~~~~~~~~s~ 969 (1275)
++++|++ |+++|+|+. +++.+||+++|. .||.++|||||++|+++...+.. ......+.|+...
T Consensus 276 ~iilL~~-G~iv~~G~~----~~~~~~f~~~G~--~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (659)
T PLN03211 276 SVLVLSE-GRCLFFGKG----SDAMAYFESVGF--SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL 348 (659)
T ss_pred eEEEecC-CcEEEECCH----HHHHHHHHHCCC--CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence 9999985 799999998 578999999963 69999999999999987532100 0011223342211
Q ss_pred HHHHHHHHHHHh--cC-CCC-----CCCCC-CCCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHH
Q 000808 970 LYRRNKALIEEL--SR-PAP-----GSKDL-YFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTM 1040 (1275)
Q Consensus 970 ~~~~~~~~~~~~--~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~ 1040 (1275)
.++.....+.. .. ... ..+.. .....+..+||+|+.+|++|++++ |||+.+...|+++++++|+++|++
T Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~l 426 (659)
T PLN03211 349 -APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLM 426 (659)
T ss_pred -cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHH
Confidence 11111111110 00 000 00000 011235578999999999999888 899999999999999999999999
Q ss_pred hcCCCCCCCchhhHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhhHHHHhHccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000808 1041 FWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVY 1120 (1275)
Q Consensus 1041 f~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~ 1120 (1275)
||+++ ..+++++.|++||++++.++.+++..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|
T Consensus 427 f~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if 501 (659)
T PLN03211 427 WWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIF 501 (659)
T ss_pred HhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 3568899999999998988888777889999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcCCCCccchhhHHh
Q 000808 1121 GIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1200 (1275)
Q Consensus 1121 ~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~ 1200 (1275)
++|+|||+||++++++||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|++
T Consensus 502 ~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ 579 (659)
T PLN03211 502 LTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIK 579 (659)
T ss_pred HhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred hhchHHHHHHHHHHHhhCCcc-----cccCCC----CcHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000808 1201 WANPVAWTMYGLVASQFGDVE-----DKMESG----ETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFN 1271 (1275)
Q Consensus 1201 ~~sp~~y~~~~l~~~~f~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 1271 (1275)
|+||++|++++++.|||++.. ..|+.. .....++ ...+++....|.++++|++++++|+++++++|++++
T Consensus 580 ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 580 YISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998654 246421 0111122 223444556899999999999999999999999887
Q ss_pred c
Q 000808 1272 F 1272 (1275)
Q Consensus 1272 ~ 1272 (1275)
|
T Consensus 659 ~ 659 (659)
T PLN03211 659 H 659 (659)
T ss_pred C
Confidence 6
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-93 Score=891.10 Aligned_cols=565 Identities=29% Similarity=0.475 Sum_probs=496.6
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 779 (1275)
+++++|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999986543 358999999998765566788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000808 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG-ESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858 (1275)
Q Consensus 780 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~lSgGerqrv~ia~~l~~~p~illlDEPts 858 (1275)
|+||+.|++.++.+...+.++++++++++++.+||.+++|+.+|+++ .++||||||||++||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999887766777788889999999999999999999754 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCccchHHHHHHhcCCCcccCCCC
Q 000808 859 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDG 938 (1275)
Q Consensus 859 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 938 (1275)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|++ +++.+||+++|. .||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g~--~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLGH--PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcCC--CCCCC
Confidence 99999999999999999888999999999999889999999999985 799999998 578999999863 69999
Q ss_pred CCCccchhhhccccccch-----hhhhHHHHhhccHHHHHHHHHHHHhcCCCC---CCCCCCCCCCCCCcHHHHHHHHHH
Q 000808 939 YNPATWMLEVTAKSQELT-----LEIDFTDIYKGSELYRRNKALIEELSRPAP---GSKDLYFPTHYTQSFFMQCVACLW 1010 (1275)
Q Consensus 939 ~npad~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 1010 (1275)
.|||||++|+++...+.. ...++.+.|+.++.+++..+.........+ ...+......+..+|+.|+..|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543221 112445566666555443333222111111 111111224567899999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhhHHHHhH
Q 000808 1011 KQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCRE 1090 (1275)
Q Consensus 1011 R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1090 (1275)
|++++.||||.++..|+++.+++|+++|++||+++++ .++.+++.|++|++++++++.++....+.|+.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999864 5678899999999999888887777788999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000808 1091 KGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAI 1170 (1275)
Q Consensus 1091 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1170 (1275)
+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcCCCCccchhhHHhhhchHHHHHHHHHHHhhCCccc-ccCCC------CcHHHHHHhhcCCCCc
Q 000808 1171 VSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVED-KMESG------ETVKQFVRSYFDFKHD 1243 (1275)
Q Consensus 1171 ~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~f~~~~~-~~~~~------~~~~~~~~~~~~~~~~ 1243 (1275)
+++++++++++|+||++++++||+||+|++|+||++|++++++.|||++... +|+.+ +..++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998765 56421 1125777789999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 000808 1244 FLGVVAVVVAAFAVLFGVLFAVGIKRFNFQNR 1275 (1275)
Q Consensus 1244 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~r 1275 (1275)
+.|.++++++++.++|+++++++|++....+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999877776
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-91 Score=925.99 Aligned_cols=588 Identities=23% Similarity=0.380 Sum_probs=504.9
Q ss_pred CCcEEEEEeEEEEEeccch-------------hh--h----ccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 000808 674 EPHSLTFDEVTYSVDMPKE-------------MK--L----QGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 734 (1275)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~-------------~~--~----~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~ 734 (1275)
+...+.|+|++.+...... .. . .+..+.++.+|+|||+.++|||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 4567999999876522110 00 0 012234577999999999999999999999999999999
Q ss_pred HHHCCCCC--ceEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCC----CCCHHHHHHH-H
Q 000808 735 VLAGRKTG--GYITGNITISGYPKKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EVDSETQKMF-I 805 (1275)
Q Consensus 735 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~----~~~~~~~~~~-~ 805 (1275)
+|+|+..+ .+.+|+|.+||.+... ..+++.++|++|+|.+++.+||+|++.|++.++.+. +.+.++.+++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 2468999999987642 234567999999999999999999999998887643 2233443333 5
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEE
Q 000808 806 EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 884 (1275)
Q Consensus 806 ~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~ 884 (1275)
+++++.+||.+++|+.+|+...++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7789999999999999999888999999999999999999999999999999999999999999999999874 899999
Q ss_pred EecCCCHHHHHhhhhhheeecCcEEEEECCCCccchHHHHHHhcCCCcccCCCCCCCccchhhhcccccc----------
Q 000808 885 TIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGYNPATWMLEVTAKSQE---------- 954 (1275)
Q Consensus 885 ~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~~~~~~~~---------- 954 (1275)
++|||+.++++.||++++|++ |+++|+|++ +++.+||+++|. .||++.|||||++|+++++.+
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG~--~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMGF--KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcCC--CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 999998889999999999996 799999998 578999999963 699999999999999875421
Q ss_pred chhhhhHHHHhhccHHHHHHHHHHHHhcCCC---------------CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcC
Q 000808 955 LTLEIDFTDIYKGSELYRRNKALIEELSRPA---------------PGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 1019 (1275)
Q Consensus 955 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 1019 (1275)
.....++++.|+.|+.+++..+.++...... ...+.....+.+..|+|+|+++|++|++++.|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 1123578899999988776555544321110 0001111234578899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhhHHHHhHccCCCCChH
Q 000808 1020 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAM 1099 (1275)
Q Consensus 1020 ~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 1099 (1275)
|.++..|+++++++|+++|++||+++++ .++++++.|++||++++.++.++..+ +.+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPKN---TSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHH
Confidence 9999999999999999999999999874 46788999999999999998887665 5566899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000808 1100 PYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLW 1179 (1275)
Q Consensus 1100 ~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1179 (1275)
+|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcCCCCccchhhHHhhhchHHHHHHHHHHHhhCCcccccC----CC------------------------CcHH
Q 000808 1180 NVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME----SG------------------------ETVK 1231 (1275)
Q Consensus 1180 ~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~f~~~~~~~~----~~------------------------~~~~ 1231 (1275)
++|+||++|+++||+||+|++|+||++|+++|++.|||++..++|. .| .++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 9999999999999999999999999999999999999999888773 10 0456
Q ss_pred HHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000808 1232 QFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNF 1272 (1275)
Q Consensus 1232 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 1272 (1275)
+|+...||++.+|+|+|++|+++|+++|+++++++++|+++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887899999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-90 Score=911.96 Aligned_cols=591 Identities=23% Similarity=0.365 Sum_probs=495.9
Q ss_pred CCcEEEEEeEEEEEec-------cchh----------h-hcc---ccccccceeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 000808 674 EPHSLTFDEVTYSVDM-------PKEM----------K-LQG---ILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTL 732 (1275)
Q Consensus 674 ~~~~~~~~~~~~~~~~-------~~~~----------~-~~~---~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTL 732 (1275)
+...+.|+|+++.... |... . ..+ .++.++.||+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 3567999999887651 1100 0 001 12235779999999999999999999999999999
Q ss_pred HHHHHCCCCC-ceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCC-------CCHHHH---
Q 000808 733 MDVLAGRKTG-GYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETQ--- 801 (1275)
Q Consensus 733 l~~l~g~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~-------~~~~~~--- 801 (1275)
||+|+|+.++ ...+|+|.+||++......++.++||+|+|.+++.+||+|++.|++.++.+.. ...+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 9999998653 24589999999987544346779999999999999999999999987763211 111111
Q ss_pred ---------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000808 802 ---------------------KMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1275)
Q Consensus 802 ---------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgL 860 (1275)
+..++++++.+||.+++|+.+|+...++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12357899999999999999999888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCccchHHHHHHhcCCCcccCCCCC
Q 000808 861 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVENIKDGY 939 (1275)
Q Consensus 861 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~ 939 (1275)
|+.++.++++.|+++++ .|+|||+++|||+.+++++||++++|++ |+++|+||+ +++.+||+++|. .||++.
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lGf--~cP~~~ 440 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCGF--KCPERK 440 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcCC--CCCCCC
Confidence 99999999999999976 4899999999998899999999999996 799999998 678999999964 699999
Q ss_pred CCccchhhhcccccc-c-----------hhhhhHHHHhhccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHH
Q 000808 940 NPATWMLEVTAKSQE-L-----------TLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVA 1007 (1275)
Q Consensus 940 npad~~~~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 1007 (1275)
|||||++|+++..+. . ....++++.|+.|..+++..+.++...............+.|..++|.|++.
T Consensus 441 n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 520 (1470)
T PLN03140 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA 520 (1470)
T ss_pred ChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence 999999999875332 1 1234678889988877654443322111000011111224588999999999
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhhHHH
Q 000808 1008 CLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVF 1087 (1275)
Q Consensus 1008 l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~er~v~ 1087 (1275)
|++|+++..+||+..+..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.+ ++.++.||+||
T Consensus 521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf 599 (1470)
T PLN03140 521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVF 599 (1470)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchh
Confidence 99999999999999999999999999999999999998665444556677899999988888776655 47788999999
Q ss_pred HhHccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 000808 1088 CREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHI 1167 (1275)
Q Consensus 1088 ~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1167 (1275)
+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+
T Consensus 600 ~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~ 679 (1470)
T PLN03140 600 YKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMII 679 (1470)
T ss_pred HHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCCCccchhhHHhhhchHHHHHHHHHHHhhCCcccc---cC-CCCcHHHHHHhhcCCCCc
Q 000808 1168 AAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDK---ME-SGETVKQFVRSYFDFKHD 1243 (1275)
Q Consensus 1168 a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~f~~~~~~---~~-~~~~~~~~~~~~~~~~~~ 1243 (1275)
|+.+++++++++++|+||++++++||+||+|++|+||++|+++|+++|||.+..+. |. .....|+.+++.+|++.+
T Consensus 680 A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~ 759 (1470)
T PLN03140 680 ANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTD 759 (1470)
T ss_pred HHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCcc
Confidence 99999999999999999999999999999999999999999999999999776543 21 122345555578999754
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000808 1244 --FLGVVAVVVAAFAVLFGVLFAVGIKRFNF 1272 (1275)
Q Consensus 1244 --~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 1272 (1275)
|.|+++++|+||+++|+++++++|++++.
T Consensus 760 ~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 760 KNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 56999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-85 Score=804.56 Aligned_cols=562 Identities=25% Similarity=0.446 Sum_probs=498.7
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000808 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 780 (1275)
+..+|+|+|+.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.+....++.++|++|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999975432 2357999999998765447889999999999999999
Q ss_pred HHHHHHHHhccCCCC----CCHHHHH-HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000808 781 YESLLYSAWLRLPPE----VDSETQK-MFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855 (1275)
Q Consensus 781 ~e~l~~~~~l~~~~~----~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDE 855 (1275)
+|+|.|+++++.+.. .++.++. +..+.+++.+||.+|+|+++|+...||+||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999998732 2222222 25678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCccchHHHHHHhcCCCccc
Q 000808 856 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVEN 934 (1275)
Q Consensus 856 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~ 934 (1275)
+|+|||+.++.++.+.||++++. +.|++++.|||+.+++++||+|++|.+ |+++|+||. +++++||+++|. .
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~Gf--~ 359 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMGF--K 359 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcCc--c
Confidence 99999999999999999999864 899999999999999999999999997 799999998 578999999864 6
Q ss_pred CCCCCCCccchhhhccccccc-----------h-hhhhHHHHhhccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHH
Q 000808 935 IKDGYNPATWMLEVTAKSQEL-----------T-LEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFF 1002 (1275)
Q Consensus 935 ~~~~~npad~~~~~~~~~~~~-----------~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1275)
||+..++|||+.++++..++. . ...++++.|..++.+++....++.........+.....+.|..|+|
T Consensus 360 cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~ 439 (1391)
T KOG0065|consen 360 CPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYW 439 (1391)
T ss_pred CCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHH
Confidence 999999999999999833211 1 1257899999999888765544332222222222333467899999
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHhHHHHHHHHHHHHHhhhhhhhHHH
Q 000808 1003 MQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAV 1082 (1275)
Q Consensus 1003 ~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 1082 (1275)
.|++.|+.|.++.++||..++..++++.+++|+++|++|++.+. .+..+.+.+.|++||++++..+.++.++ +...+
T Consensus 440 ~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~ 516 (1391)
T KOG0065|consen 440 EQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQ 516 (1391)
T ss_pred HHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999983 4566788999999999999998888777 45567
Q ss_pred hhHHHHhHccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000808 1083 ERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMT 1162 (1275)
Q Consensus 1083 er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1162 (1275)
.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||.++|++||.++++++++..|++++++++++++
T Consensus 517 ~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~ 596 (1391)
T KOG0065|consen 517 RLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLS 596 (1391)
T ss_pred hcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCCCCccchhhHHhhhchHHHHHHHHHHHhhCCcccccC-CCC-------------
Q 000808 1163 PNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME-SGE------------- 1228 (1275)
Q Consensus 1163 ~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~f~~~~~~~~-~~~------------- 1228 (1275)
++...|+.++++.+.+..+++||+||.++||+||+|++|+||+.|++++++.|||++.+++|+ .||
T Consensus 597 ~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~ 676 (1391)
T KOG0065|consen 597 RTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCA 676 (1391)
T ss_pred chHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccch
Confidence 999999999999999999999999999999999999999999999999999999999999996 111
Q ss_pred -----------cHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000808 1229 -----------TVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNFQ 1273 (1275)
Q Consensus 1229 -----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 1273 (1275)
.+.+|+...|++++.|.|+++++++||.++|.++..+++.|++.-
T Consensus 677 ~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 677 ATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 246788888889999999999999999999999999999999853
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-75 Score=739.16 Aligned_cols=760 Identities=21% Similarity=0.277 Sum_probs=431.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
++||+||.||||||||.+|+|+++.. +|+|.++| .++||||++|++ +.||||||.|+.++. .++
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~-ngTvreNILFG~~~d--~~r 612 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQ-NGTVRENILFGSPYD--EER 612 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhh-CCcHHHhhhcCcccc--HHH
Confidence 47999999999999999999999864 99999999 599999998865 679999999976543 133
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
|+.+- ++|+++++ ++ -|+.++.|.||++++ +|||||||||+||||+|
T Consensus 613 Y~~Vi---------------------~aC~L~~D---------le--~Lp~GD~TeIGErGi-nLSGGQKqRIsLARAVY 659 (1381)
T KOG0054|consen 613 YDKVI---------------------KACALKKD---------LE--ILPFGDLTEIGERGI-NLSGGQKQRISLARAVY 659 (1381)
T ss_pred HHHHH---------------------HHccCHhH---------Hh--hcCCCCcceecCCcc-CCcHhHHHHHHHHHHHh
Confidence 33222 33332211 11 288999999998766 89999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH---HH
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD---FF 237 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~---~f 237 (1275)
+++||++||+|+|++|++++.+|++.+... ..+++|++.++| ..+..+.+|+|++|++|+|...|+++|+.+ .|
T Consensus 660 ~~adIYLLDDplSAVDahvg~~if~~ci~~--~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~ 736 (1381)
T KOG0054|consen 660 QDADIYLLDDPLSAVDAHVGKHIFEECIRG--LLRGKTVILVTH-QLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDF 736 (1381)
T ss_pred ccCCEEEEcCcchhhhHhhhHHHHHHHHHh--hhcCCEEEEEeC-chhhhhhCCEEEEecCCeEecccCHHHHHhcchhH
Confidence 999999999999999999999999877643 234445555566 557889999999999999999999999874 22
Q ss_pred HhCCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhcCCcccCCCCCccccccc
Q 000808 238 ESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKM 317 (1275)
Q Consensus 238 ~~~G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1275)
+++ +.+. +. +..........+ ......+ .+. +.........++ ....+..+..........
T Consensus 737 ~~l-------------~~~~-~~-~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ee~~ 797 (1381)
T KOG0054|consen 737 AEL-------------AHEE-ES-EQEEEASEKDLE-SGESSRE-SES-RSLESLSSEEEK-SKDEKEEEDKLVQEEERE 797 (1381)
T ss_pred HHH-------------hhcc-ch-hhcccccccccc-ccccccc-hhh-hhhhhhcccccc-cccccchhhHHHHHHHHh
Confidence 221 0000 00 000000000000 0000000 000 000000000000 000000000000000000
Q ss_pred cccCHHHHHHHHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHHH---hhccccCCCCCc---CCccceehHHHH----HH
Q 000808 318 YGVGKKELLKANISRELLLMKRNSFVYIF-KLTQLSSMALVSMT---LFFRTKMHKDSV---SDGGIYVGATFF----AV 386 (1275)
Q Consensus 318 ~~~~~~~~~~~~~~r~~~~~~r~~~~~~~-~~~~~~~~~l~~g~---l~~~~~~~~~~~---~~~~~~~g~~f~----~i 386 (1275)
.+.-.+..++.. +.. ........+ .+.........++. +-++.+...... .+...+.+.... ..
T Consensus 798 ~G~v~~~vY~~Y----~~a-~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~ 872 (1381)
T KOG0054|consen 798 TGKVSWSVYKKY----IKA-AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASS 872 (1381)
T ss_pred cCEeeHHHHHHH----HHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHH
Confidence 111111111111 111 000111110 11111111111111 212222211111 122222222211 11
Q ss_pred HHHHHhhhHHHHHHhhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHH----
Q 000808 387 MMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFL---- 462 (1275)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l---- 462 (1275)
+..+..++.....+......+ +-.+.+.+.+.|++|++++ +.||++|||.
T Consensus 873 ~~~~~rs~~~~~~~l~aS~~L------------h~~ml~~Ilrapm~FFdtT--------------P~GRILNRFSkD~~ 926 (1381)
T KOG0054|consen 873 LLTLLRSFLFAKGGLKASRKL------------HDKLLNSILRAPMSFFDTT--------------PTGRILNRFSKDID 926 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhCcchhcCCC--------------CccchhhhcccchH
Confidence 112222222222222222122 2235667888899986643 5899999993
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCC
Q 000808 463 --LLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540 (1275)
Q Consensus 463 --~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~ 540 (1275)
...+...+...+..++..++.-..++.....+++.+.++ .++||.-..+|.-.+....+..+.
T Consensus 927 ~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl---------------~v~~~~~~~~Y~~tsReLkRLesi 991 (1381)
T KOG0054|consen 927 TVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPL---------------GVIYYFVQRYYLATSRELKRLESI 991 (1381)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH---------------HHHHHHHHHHHHHHhHHHHHhhhc
Confidence 112222222222222222211122222222222222222 234555666777777788888887
Q ss_pred ccccccCCCcccc-hHHHhhhcCcccC--------------Cc------chhHHHHH-HHHHHHHHHHHHHHHHhhcccC
Q 000808 541 SWRKFTSNSNETL-GVQVLKSRGFFPH--------------AY------WYWLGLGA-TIGFVLLFNIGFTLSLTFLNQF 598 (1275)
Q Consensus 541 ~~~~~~~~~~~~~-g~~~l~~~~~~~~--------------~~------~~w~~~~~-~~~~~~~~~i~~~~~l~~~~~~ 598 (1275)
+.++..++..++. |...+++++.... .+ ..|+++.. +++.++++.+.....+.....
T Consensus 992 tRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~- 1070 (1381)
T KOG0054|consen 992 TRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL- 1070 (1381)
T ss_pred ccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-
Confidence 7777776665544 6666666553221 11 12554432 222222222222111111100
Q ss_pred CCCcceeccCCcccccCCcCCCCcccccCCCCCCCCCCCCcccccccchhhhhcccccccccccCccCCCcccCCCCcEE
Q 000808 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSL 678 (1275)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1275)
..+..+....+.+-. +.+..++.+......+.....+|+ ...|...+++.+.. ....+++..+| ..+.+
T Consensus 1071 ~~~g~vGLslsyal~----lt~~l~~~vR~~~elEn~m~SVER---v~eY~~~~~E~p~~---~~~~~pp~~WP-~~G~I 1139 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQ----LTGLLQWLVRQSSELENNMVSVER---VLEYTDIPSEAPLE---IEESRPPPSWP-SKGEI 1139 (1381)
T ss_pred CCcchHHHHHHHHHH----HHHHHHHHHHHHHHHHhcchhhhH---HHHHhcCCCCCCCC---CcCCCCCCCCC-CCCeE
Confidence 001111000000000 001111111111111111222222 12222222221100 11111222344 34689
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+|+|++.+|.. +-..||||||++|+|||++||+|++|||||||+++|.+... +.+|+|.|||.++.+
T Consensus 1140 ~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1140 EFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeeccc
Confidence 99999988852 23469999999999999999999999999999999998765 358999999999865
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCCC
Q 000808 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG------LPGESG 829 (1275)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~ 829 (1275)
..+|++++.+||||.+|. -|+|+|| ++..+..++.+.++||..+|.+...+..+ .+++.+
T Consensus 1207 igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1207 IGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred ccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 457888999999999986 5888887 33444556678899998888765433322 234568
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
+|-||||.+|+||||+++++||+|||+|+++|+++...|+++||+..+ +||||++.|+.+ ....+|||+||++ |++
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~--TVmd~DrVlVld~-G~v 1351 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN--TVMDSDRVLVLDA-GRV 1351 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--hhhhcCeEEEeeC-CeE
Confidence 999999999999999999999999999999999999999999999775 799999999987 3456799999996 799
Q ss_pred EEECCCCc
Q 000808 910 IYVGPLGR 917 (1275)
Q Consensus 910 ~~~g~~~~ 917 (1275)
+.+|.|.+
T Consensus 1352 ~EfdsP~~ 1359 (1381)
T KOG0054|consen 1352 VEFDSPAE 1359 (1381)
T ss_pred eecCChHH
Confidence 99999843
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=683.22 Aligned_cols=548 Identities=30% Similarity=0.491 Sum_probs=457.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
++||||||||||||||++|+|+..++...+|+|++||++.+....++.+|||.|+|.+++++||+|++.|+|+++.+..
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~- 136 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS- 136 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-
Confidence 5899999999999999999999987557899999999888777788899999999999999999999999999875421
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
...++.+.+++++++.+||.+|+||.||+...+++||||||||+||..|+
T Consensus 137 ------------------------------~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell 186 (613)
T KOG0061|consen 137 ------------------------------LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 (613)
T ss_pred ------------------------------CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH
Confidence 11223445789999999999999999999888999999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHHHhC
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f~~~ 240 (1275)
.||+||+|||||||||+.++.++++.|+++++. ++++|+++|||+.+++++||++++|++|+++|+|+++++.+||++.
T Consensus 187 ~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~ 265 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSL 265 (613)
T ss_pred cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhC
Confidence 999999999999999999999999999999986 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhcCCcccCCCCCcccccccccc
Q 000808 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGV 320 (1275)
Q Consensus 241 G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1275)
|++||++.||+||+.++.+.++......+. .......+.++......+..+......... .........
T Consensus 266 G~~~P~~~Npadf~l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 334 (613)
T KOG0061|consen 266 GFPCPELENPADFLLDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSP 334 (613)
T ss_pred CCCCCCcCChHHHHHHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCC
Confidence 999999999999999987643110000000 000000000000000000000000000000 000011167
Q ss_pred CHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCccceehHHHHHHHHHHHhhhH-HHHH
Q 000808 321 GKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMS-DISM 399 (1275)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~-~~~~ 399 (1275)
+++.|+..+.+|.+....|++.....+..+...+++++|.+|++.+.... ......|+.++.+.+..+..+. .+..
T Consensus 335 s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~ 411 (613)
T KOG0061|consen 335 SWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPV 411 (613)
T ss_pred cHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999999999999999999999999999999999854332 2225677888887777666665 4677
Q ss_pred HhhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000808 400 TIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIA 479 (1275)
Q Consensus 400 ~~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l~~~l~~~~~~~l~~~i~ 479 (1275)
...++++|.||+..++|+.++|++++.+.++|+.++.+++|+.++|||+|++++..+|+.+.++.++...++++++.+++
T Consensus 412 f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~ 491 (613)
T KOG0061|consen 412 FPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFIS 491 (613)
T ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCCccccccC--CCcccchHHH
Q 000808 480 AAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTS--NSNETLGVQV 557 (1275)
Q Consensus 480 ~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~~~--~~~~~~g~~~ 557 (1275)
+..++...+..+++++.+.+++++||+++.+.+|.||.|+.|+|+.+|++|+++.|+|.+....|... ..+...|.++
T Consensus 492 ~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 571 (613)
T KOG0061|consen 492 AIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDV 571 (613)
T ss_pred HhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999744445443 3456678899
Q ss_pred hhhcCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000808 558 LKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLN 596 (1275)
Q Consensus 558 l~~~~~~~~~~~~w~~~~~~~~~~~~~~i~~~~~l~~~~ 596 (1275)
+...++...+ .|.++.+++++.++|++++++++++..
T Consensus 572 l~~~~~~~~~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 572 LKQLGFEDSS--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHhcCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9988886654 588999999999999999999887653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-73 Score=698.11 Aligned_cols=778 Identities=21% Similarity=0.266 Sum_probs=407.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
.+||||||||||||++++|.+.++|+ +|+|.++|.++++.+. |+++|.|.|+|.+| +.||+|||.|+.+-
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~~d--- 453 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGKPD--- 453 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCCCc---
Confidence 37999999999999999999999998 9999999999877653 57899999999766 56999999995321
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
...+...+++.+ .+..--...|+++.+|.+|++++ .|||||||||+|||
T Consensus 454 ----------------------at~~~i~~a~k~--------ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 454 ----------------------ATREEIEEAAKA--------ANAHDFILKLPDGYDTLVGERGV-QLSGGQKQRIAIAR 502 (1228)
T ss_pred ----------------------ccHHHHHHHHHH--------ccHHHHHHhhHHhhcccccCCCC-CCChHHHHHHHHHH
Confidence 111112222211 11112223489999999998777 59999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f 237 (1275)
||+.+|+|||||||||+||+.++..+.+.|.+.. .++|+|+ +.|..+.+.+ +|+|++|++|+|++.|+++|++..
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~- 577 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL- 577 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc-
Confidence 9999999999999999999999999999998753 3566666 5666666665 999999999999999999999861
Q ss_pred HhCCCCCCCCCChhhHH--HhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhh--cCCcccCCCCCccc
Q 000808 238 ESMGFKCPERKGVADFL--QEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADEL--RTPFDKCKSHPAAL 313 (1275)
Q Consensus 238 ~~~G~~~p~~~~~ad~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 313 (1275)
..-.++.. ++.....+.. +.+.. ...+.....+.+. ......+. .......+.+....
T Consensus 578 ---------~G~Y~~lv~~Q~~~~~~~~~----~~~~~----~~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~ 639 (1228)
T KOG0055|consen 578 ---------GGIYSSLVRLQELEKAAEDE----EEEES----LKEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDP 639 (1228)
T ss_pred ---------cchHHHHHHHHhhhhhhhcc----ccccc----hhhhhhhcccccc-ccccccCCcccccccccccccccc
Confidence 11112221 1111111100 00000 0000000000000 00000000 00000000000000
Q ss_pred cccccccCHHHHHHHHHHHHHHHHhcChHHHHHHHH-------HHHHHHHHHHHhh---ccccCCCCCcCCccceehHHH
Q 000808 314 TTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLT-------QLSSMALVSMTLF---FRTKMHKDSVSDGGIYVGATF 383 (1275)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~-------~~~~~~l~~g~l~---~~~~~~~~~~~~~~~~~g~~f 383 (1275)
... . ........+.|-+...++.+....+-.+ ...+++.+++.++ +..+.+ ........+.++|
T Consensus 640 -~~~--~-~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~--~~~~~~~~~al~f 713 (1228)
T KOG0055|consen 640 -EEP--V-SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD--ELKREVRAWALIF 713 (1228)
T ss_pred -ccc--c-ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHHH
Confidence 000 0 0000111223333333333333322222 2223333333322 211111 0111111122333
Q ss_pred HHHHHHH--HhhhHHHHHHhhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHH
Q 000808 384 FAVMMTM--FNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQF 461 (1275)
Q Consensus 384 ~~i~~~~--~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~ 461 (1275)
..+.... ++.+...........+..|-|.. +.+.++..++.+++- ..|.|++..++
T Consensus 714 ~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~---------~F~~ll~qd~~wFD~-------------~~nsg~l~~RL 771 (1228)
T KOG0055|consen 714 LGLGIVSGITNFLQHYFFGIAGEKLTKRLRSM---------MFRALLRQEVGWFDD-------------PENSGALSSRL 771 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCCCcccCC-------------CccchHHHHHH
Confidence 2222111 11111111122222222222211 112233333333221 11237666666
Q ss_pred HHH-----HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCH---HHHHHHHHH
Q 000808 462 LLL-----LLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSP---MMYAQNAIV 533 (1275)
Q Consensus 462 l~~-----~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp---~~y~~~al~ 533 (1275)
... .++..-.+.+...++++...+.+|..++|=+.++.+.+..+++-..-+. -+++.-.+. ..|.-.+..
T Consensus 772 a~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~--~~~~~~~~~~~~~~~~ea~~i 849 (1228)
T KOG0055|consen 772 ATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQ--KKFLKGFSKDDKKAYEEASKI 849 (1228)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHH
Confidence 321 1222222233333344444455555555544443333221110000000 000000000 000000111
Q ss_pred HhHcCCCccccccCCCcccchHHHhhhcC---cccC----CcchhHHHHHHHHHHHH---HHHHHHHHHhhcccCCC-Cc
Q 000808 534 ANEFFGHSWRKFTSNSNETLGVQVLKSRG---FFPH----AYWYWLGLGATIGFVLL---FNIGFTLSLTFLNQFEK-PR 602 (1275)
Q Consensus 534 ~~ef~~~~~~~~~~~~~~~~g~~~l~~~~---~~~~----~~~~w~~~~~~~~~~~~---~~i~~~~~l~~~~~~~~-~~ 602 (1275)
.+|.... .+.+.. .+....++..+. -.+. ....|.+++..+...+. +.+.+.++......... ..
T Consensus 850 A~eai~N-IrTV~a---l~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~ 925 (1228)
T KOG0055|consen 850 AIEAVSN-IRTVAA---LCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFE 925 (1228)
T ss_pred HHHHHHh-HHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHH
Confidence 1110000 000000 000000000000 0000 01123333322222221 22223333222211100 00
Q ss_pred ceeccCCccccc-CCcCCCCcccccCCCCCCCCCCCCcccccccchhhhhccccc-ccccccCccCCCcccCCCCcEEEE
Q 000808 603 AVISDESESNDL-GNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQRE-VTVGAIQPKKRGMVLPFEPHSLTF 680 (1275)
Q Consensus 603 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1275)
.+..... .... ....+..... .|.... .. ......-.+..+.+ .+... +.+...|...+.+++
T Consensus 926 ~~~~vf~-~l~~ta~~~~~~~s~--------~Pd~~k-a~-~Aa~~iF~i~dr~~~i~~~~----~~~~~~~~~~G~I~~ 990 (1228)
T KOG0055|consen 926 DVFRVFM-ALSFTAMALGQASSY--------APDISK-AK-IAAGSIFEILDRKPTIDPDS----TSGGKLPNVKGDIEF 990 (1228)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhh--------CcHHHH-HH-HHHHHHHHHhcCCCCCCCCC----CCCCccccceeEEEE
Confidence 0000000 0000 0000000000 000000 00 00001111111111 11000 112223334568999
Q ss_pred EeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc--
Q 000808 681 DEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-- 758 (1275)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-- 758 (1275)
+||+|+|+.++ +.+||+|+|++|++|+.+||+|||||||||.+.+|-...+ +..|.|.|||.+++.
T Consensus 991 ~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~ln 1058 (1228)
T KOG0055|consen 991 RNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLN 1058 (1228)
T ss_pred eeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCcccccCC
Confidence 99999997553 4579999999999999999999999999999999987655 458999999998765
Q ss_pred -ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH-------cCCCccccccccCCCCCCC
Q 000808 759 -ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL-------VELNPLRQSLVGLPGESGL 830 (1275)
Q Consensus 759 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~~~~~~~~l 830 (1275)
..+|+++|.|.|+|.+|. -|++||+.|+. . +.+.++ +.++++. .+|.+-.||.+|..+. +|
T Consensus 1059 l~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~-QL 1127 (1228)
T KOG0055|consen 1059 LKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGERGV-QL 1127 (1228)
T ss_pred HHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCcccC-cC
Confidence 356788999999999986 69999999971 1 133333 3333333 3456667899986554 79
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 831 SgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
|||||||++||||+++||+||+|||+||+||+++.+.+++.|.+.. .|+|.|+++|+++ ..+.+|.|.++++ |+++
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~Vv 1203 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVV 1203 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999864 5899999999986 5789999999995 8999
Q ss_pred EECCC
Q 000808 911 YVGPL 915 (1275)
Q Consensus 911 ~~g~~ 915 (1275)
..|.-
T Consensus 1204 E~GtH 1208 (1228)
T KOG0055|consen 1204 EQGTH 1208 (1228)
T ss_pred ecccH
Confidence 99985
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-71 Score=686.93 Aligned_cols=551 Identities=24% Similarity=0.386 Sum_probs=453.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++||+|||.|+++++.+...
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999998875456899999999876555667899999999999999999999999877532110
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCc-cccccccccchhhHHHHH
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEM-VRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqrqRvsiA~al 159 (1275)
.+ ++.+..++++++.+||.++.||.||++. .++|||||||||+||++|
T Consensus 133 -------~~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 133 -------TK------------------------KEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred -------CH------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 00 1122347889999999999999999863 688999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHHHh
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f~~ 239 (1275)
+++|++++|||||+|||+.++.++++.|+++++ .+.++|+++||++.++.++||++++|++|+++|+|+++++.+||++
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999875 4678888888898899999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhcCCcccCC---CCCcccccc
Q 000808 240 MGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCK---SHPAALTTK 316 (1275)
Q Consensus 240 ~G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 316 (1275)
+|++||++.||+||+.++.+....... . .....+++.+.+++++..++..+.......... .........
T Consensus 261 ~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (617)
T TIGR00955 261 LGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333 (617)
T ss_pred cCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccc
Confidence 999999999999999988754322110 0 001123344445444333332222111000000 000111123
Q ss_pred ccccCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCccceehHHHHHHHHHHHhhhH-
Q 000808 317 MYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMS- 395 (1275)
Q Consensus 317 ~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~- 395 (1275)
.+..+.+.|+..+++|.+...+|++..+..++.+.+++++++|++|++.+.+. .+.....|++|+.++...+.++.
T Consensus 334 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 334 GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999876432 23344578888887777666553
Q ss_pred HHHHHhhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHH
Q 000808 396 DISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALF 475 (1275)
Q Consensus 396 ~~~~~~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l~~~l~~~~~~~l~ 475 (1275)
.+.....+++++.||+..++|++.+|++++.+.++|+.++.+++|..++|||+|+++++++|+.++++.++...++.+++
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCCcc-ccccCCC---cc
Q 000808 476 RFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSW-RKFTSNS---NE 551 (1275)
Q Consensus 476 ~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~-~~~~~~~---~~ 551 (1275)
.++++++++..+|..+++++++++++|+||+++.++||.||+|++|+||++|++++++.|||.+..+ .|...+. +.
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988765 4432221 23
Q ss_pred cchHHHhhhcCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000808 552 TLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFL 595 (1275)
Q Consensus 552 ~~g~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~i~~~~~l~~~ 595 (1275)
..|.++++.+++... +.|.++++++++.++|.+++++.+++.
T Consensus 571 ~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 571 SSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred cChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889998888654 358899999999999999999988753
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-70 Score=677.71 Aligned_cols=548 Identities=21% Similarity=0.346 Sum_probs=428.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+|||||||||||++|+|+.+|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++....
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~- 172 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS- 172 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-
Confidence 48999999999999999999998874 3589999999887532 34569999999999999999999999876532110
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
.. .++....++++++.+||+++.||.+|++..++|||||||||+||++|+
T Consensus 173 ------~~------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 173 ------LT------------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred ------CC------------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 00 011123467889999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHHHhC
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f~~~ 240 (1275)
.+|+|++|||||+|||+.++.++++.|+++++ .++|+|+++||+..++.++||++++|++|++++.|+++++.+||+++
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHC
Confidence 99999999999999999999999999999875 46777887777777899999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhc-----CCcccC----CCCCc
Q 000808 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR-----TPFDKC----KSHPA 311 (1275)
Q Consensus 241 G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~~ 311 (1275)
||+||++.|||||+.++.+...+.......+.+ ...+.+.+.+++... .+..++.. ...... .....
T Consensus 302 G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (659)
T PLN03211 302 GFSPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEH 377 (659)
T ss_pred CCCCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhccccccc
Confidence 999999999999999988654221000000000 011222233322110 00000000 000000 00000
Q ss_pred cccccccccCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCccceehHHHHHHHHHHH
Q 000808 312 ALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMF 391 (1275)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~~g~~f~~i~~~~~ 391 (1275)
......+..+++.|+..+++|.+.. +|++.....++++.+++++++|++|++.+ ..+...+.|++||++++..+
T Consensus 378 ~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~ 451 (659)
T PLN03211 378 RSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGV 451 (659)
T ss_pred ccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 0011224467889999999999887 78777778999999999999999999864 12345567889888776554
Q ss_pred -hhhHHHHHHhhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHH
Q 000808 392 -NGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQM 470 (1275)
Q Consensus 392 -~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l~~~l~~~~ 470 (1275)
..+..+..+..++++++|||..++|++.+|++++.+.++|+.++.+++|+.|+|||+|+++++++|+.++++.++...+
T Consensus 452 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~ 531 (659)
T PLN03211 452 FPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLV 531 (659)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4456677777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCCc-----cccc
Q 000808 471 ASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHS-----WRKF 545 (1275)
Q Consensus 471 ~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~-----~~~~ 545 (1275)
+++++.+++++++++.+|+.+++++++++++|+||+++ +||.||+|++|+||++|++++++.|||.+.. +.|.
T Consensus 532 ~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~ 609 (659)
T PLN03211 532 SQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCS 609 (659)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCC
Confidence 99999999999999999999999999999999999996 7999999999999999999999999997643 2332
Q ss_pred cCCCcccchHHHhhhcCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000808 546 TSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLN 596 (1275)
Q Consensus 546 ~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~i~~~~~l~~~~ 596 (1275)
........++.++....+. ....|.++++++++++++.++++++++..+
T Consensus 610 ~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 610 LPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2111111111222222222 234688999999999999999998887543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=691.89 Aligned_cols=223 Identities=28% Similarity=0.416 Sum_probs=192.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++. +++.+|+|||+.|++||++||+||||||||||+|+|+|..++ .+|+|.++|.+.
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 5899999988741 124699999999999999999999999999999999998763 489999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 757 KQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.+||.+.+|+.++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 42 2245679999999999999999999998776652 2334445678899999999998888874 699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||++||+||+.+|+|+||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++..++||+++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999998877999999999986 67789999999996 79999998
Q ss_pred CCccchHHHHHH
Q 000808 915 LGRHSCHLIRYF 926 (1275)
Q Consensus 915 ~~~~~~~~~~~f 926 (1275)
+ +++...|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 7 4455444
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=709.10 Aligned_cols=213 Identities=22% Similarity=0.302 Sum_probs=178.8
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
+.++|+|++++|+. +.+++|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 57999999999841 22469999999999999999999999999999999999876 348999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
+.. ..+|+.+++|||++.+|.. |++|||.+.. ..+ ++.+.++++..++.+. .|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 4567889999999999875 9999996431 122 3346777777776533 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
+.+||||||||+||||||+++|+||+||||||+||+++...|++.|++..+ ++|||+++|+++ ....+|+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999998754 899999999975 4567999999996
Q ss_pred CcEEEEECCCCc
Q 000808 906 GGQEIYVGPLGR 917 (1275)
Q Consensus 906 gg~~~~~g~~~~ 917 (1275)
|+++.+|++++
T Consensus 1448 -G~IvE~Gt~~e 1458 (1622)
T PLN03130 1448 -GRVVEFDTPEN 1458 (1622)
T ss_pred -CEEEEeCCHHH
Confidence 79999999854
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=701.64 Aligned_cols=212 Identities=21% Similarity=0.281 Sum_probs=178.0
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++|+|++++|+. +.+++|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46999999999841 22469999999999999999999999999999999999876 348999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
+.+ ..+|+.++||||++.+|+. |++|||.+.. +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 4567889999999999875 9999996421 122 3346777887777543 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
+.+||||||||++|||||+++|+||+||||||+||++++..|++.|++.. +++|+|+++|+++ ....+|+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4799999999975 5667999999996
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+++
T Consensus 1445 -G~ivE~Gt~~ 1454 (1495)
T PLN03232 1445 -GQVLEYDSPQ 1454 (1495)
T ss_pred -CEEEEECCHH
Confidence 7999999874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=687.39 Aligned_cols=213 Identities=18% Similarity=0.223 Sum_probs=178.6
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++|+|++++|+. +..++|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 57999999999852 12369999999999999999999999999999999999766 347999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
+.. ..+|+.+++|||++.+|+. |+||||.... +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 4567889999999999975 9999995211 122 2346778888777543 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
+.+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4799999999975 5677999999996
Q ss_pred CcEEEEECCCCc
Q 000808 906 GGQEIYVGPLGR 917 (1275)
Q Consensus 906 gg~~~~~g~~~~ 917 (1275)
|+++.+|++.+
T Consensus 1495 -G~IvE~G~~~e 1505 (1522)
T TIGR00957 1495 -GEVAEFGAPSN 1505 (1522)
T ss_pred -CEEEEECCHHH
Confidence 89999999843
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=570.60 Aligned_cols=459 Identities=26% Similarity=0.322 Sum_probs=350.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC-CceeEEEEECCccCCCccc-------cceEEEeccccc--cCCCCCHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSK-LKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDV--HIGEMTVRETLAF 70 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~-~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~--~~~~lTv~e~l~f 70 (1275)
+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++. +-|..||.+.|.-
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 47999999999999999999999876 4468999999987644322 267999999843 5566899999987
Q ss_pred HHhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCcccccccccc
Q 000808 71 SARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1275)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1275)
....++... .+++...+.++|+..||++.... +++++.||||||
T Consensus 117 ~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~r 160 (539)
T COG1123 117 ALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMR 160 (539)
T ss_pred HHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHH
Confidence 666543111 12233456778999999987654 678999999999
Q ss_pred chhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecCh
Q 000808 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~ 230 (1275)
|||.||+||+.+|++|++||||++||+.++.+|++.|+++.++ .++.++.++|+..-+.++||||+||.+|++++.|++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999998765 467777899999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhcCCcccCCCCC
Q 000808 231 ELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHP 310 (1275)
Q Consensus 231 ~~~~~~f~~~G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1275)
+++.+.+ .| |++
T Consensus 240 ~~i~~~p--------~h-------------------------pYT----------------------------------- 251 (539)
T COG1123 240 EEILSNP--------QH-------------------------PYT----------------------------------- 251 (539)
T ss_pred HHHHhcc--------CC-------------------------ccc-----------------------------------
Confidence 8875410 00 000
Q ss_pred ccccccccccCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCccceehHHHHHHHHHH
Q 000808 311 AALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTM 390 (1275)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~~g~~f~~i~~~~ 390 (1275)
+.+
T Consensus 252 ---------------------~~L-------------------------------------------------------- 254 (539)
T COG1123 252 ---------------------RGL-------------------------------------------------------- 254 (539)
T ss_pred ---------------------HHH--------------------------------------------------------
Confidence 000
Q ss_pred HhhhHHHHHHhhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHH
Q 000808 391 FNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQM 470 (1275)
Q Consensus 391 ~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l~~~l~~~~ 470 (1275)
+...|
T Consensus 255 ------------------------------------l~a~p--------------------------------------- 259 (539)
T COG1123 255 ------------------------------------LAAVP--------------------------------------- 259 (539)
T ss_pred ------------------------------------HhhCC---------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCCccccccCCCc
Q 000808 471 ASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTSNSN 550 (1275)
Q Consensus 471 ~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~~~~~~ 550 (1275)
. ...
T Consensus 260 -------------------------------------------~---------------------------------~~~ 263 (539)
T COG1123 260 -------------------------------------------R---------------------------------LGD 263 (539)
T ss_pred -------------------------------------------C---------------------------------ccc
Confidence 0 000
Q ss_pred ccchHHHhhhcCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeccCCcccccCCcCCCCcccccCCCC
Q 000808 551 ETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSN 630 (1275)
Q Consensus 551 ~~~g~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1275)
. ....
T Consensus 264 -----------------------------------------------~----------------------------~~~~ 268 (539)
T COG1123 264 -----------------------------------------------E----------------------------KIIR 268 (539)
T ss_pred -----------------------------------------------c----------------------------cccc
Confidence 0 0000
Q ss_pred CCCCCCCCcccccccchhhhhcccccccccccCccCCCcccCCCCcEEEEEeEEEEEeccchhhhccccccccceeeceE
Q 000808 631 SSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVS 710 (1275)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs 710 (1275)
... . .. .+ ...-++++|++..+..+..+. ....+...+++|||
T Consensus 269 ~~~------~-------------------~~---------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VS 311 (539)
T COG1123 269 LPR------R-------------------GP---------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVS 311 (539)
T ss_pred ccc------c-------------------cc---------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeee
Confidence 000 0 00 00 112477888887776433111 01123457999999
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC--Cc---ccccceEEEeccCC--CCCCCCCHHHH
Q 000808 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--KQ---ETFTRISGYCEQND--IHSPFVTVYES 783 (1275)
Q Consensus 711 ~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~--~~---~~~~~~~~~v~q~~--~~~~~ltv~e~ 783 (1275)
|++++||++||+|+||||||||.++|+|..++ ..|.|.++|.+. .. ...++.+-+++|++ .+.|.+||++.
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 99999999999999999999999999998764 479999999762 11 12344566677765 57799999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000808 784 LLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862 (1275)
Q Consensus 784 l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~ 862 (1275)
+.-....... ....++++++.++++.+||.. ..+++ +.+||||||||++|||||+.+|++|++|||||.||+
T Consensus 390 i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 390 LAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred HHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 9776544322 224566778999999999985 34444 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 863 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 863 ~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
..+..+.++|+++.++ |.|.|++|||.+ -+...|||+++|.+ |+++..||.
T Consensus 463 svqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 9999999999999866 999999999986 46789999999996 899999975
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-63 Score=664.62 Aligned_cols=212 Identities=24% Similarity=0.277 Sum_probs=178.7
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++|+||+++|+. +.+.+|+||||+|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 57999999999852 22459999999999999999999999999999999999876 357999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
+.. ..+|+.++||||++.+|.. |++|||... ...+ ++.+.++++..++.+. .|+.+|.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge- 1441 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLE- 1441 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccC-
Confidence 754 4567889999999999874 999999521 1222 3457788888888654 3556664
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 826 GESGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~-p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
++.+||||||||++|||||+++ |+||+||||||+||+++...|++.|++..+ ++|||+++|+++ ....+|+|++|+
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHH--HHHhCCEEEEEE
Confidence 3357999999999999999996 899999999999999999999999998654 799999999974 678899999998
Q ss_pred cCcEEEEECCCC
Q 000808 905 RGGQEIYVGPLG 916 (1275)
Q Consensus 905 ~gg~~~~~g~~~ 916 (1275)
+ |+++..|+++
T Consensus 1519 ~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1519 H-GAVAEMGSPR 1529 (1560)
T ss_pred C-CEEEEECCHH
Confidence 6 7999999874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=659.57 Aligned_cols=211 Identities=19% Similarity=0.247 Sum_probs=178.5
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++|+||+++|+. +.+++|+|||++|+|||++||+|+||||||||+++|+|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 57999999999852 23469999999999999999999999999999999999864 37999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
+.. ..+|+.++|+||++.+|+. |+||||.... .. .++.+.++++.++|.+. .|+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 764 3467889999999999974 9999994311 11 23457888888888543 3556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
+..+||||||||+||||||+++|+||+||||||+||+++...|++.|++..+ ++|||+++|+++ ....+|+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 3457999999999999999999999999999999999999999999998754 799999999974 5677999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++.+|++.
T Consensus 1427 -G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 -SSVKQYDSIQ 1436 (1490)
T ss_pred -CEEEEeCCHH
Confidence 7999999874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-62 Score=647.63 Aligned_cols=218 Identities=18% Similarity=0.299 Sum_probs=178.7
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc------------
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 743 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~------------ 743 (1275)
..++|+||+|+|+.. +++++|+|+|++|+||+++||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 469999999998521 1246999999999999999999999999999999999965531
Q ss_pred ----------------------------------------eEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCH
Q 000808 744 ----------------------------------------YITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 744 ----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv 780 (1275)
+.+|+|.+||.++.. ..+|+.+|||+|++.+|+ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 147999999998753 456788999999999885 799
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000808 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1275)
Q Consensus 781 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illl 853 (1275)
+||+.++. + +.+. +.++++++..++.+ -.|+.+|.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998852 1 2232 33566666666543 347788743 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhhhhheeecC---cE-EEEECCCC
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDELFLMKRG---GQ-EIYVGPLG 916 (1275)
Q Consensus 854 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g---g~-~~~~g~~~ 916 (1275)
|||||+||+++.+.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.+
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 99999999999999999999986 35899999999974 56889999999973 66 45789753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=591.37 Aligned_cols=223 Identities=21% Similarity=0.301 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.+..
T Consensus 260 l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECC
Confidence 566777655420 0124599999999999999999999999999999999997641 13799999998753
Q ss_pred cc----cccceEEEeccCC---CCCCCCCHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000808 758 QE----TFTRISGYCEQND---IHSPFVTVYESLLYSAWLRLPP--EVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1275)
Q Consensus 758 ~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~l~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 827 (1275)
.. ..++.++|++|++ .+++.+||.||+.+........ ..+.++.+++++++++.+++. +..++.+
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 403 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI----- 403 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----
Confidence 21 1244689999985 4678899999998753211110 012233445688999999996 4667665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G 481 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-G 481 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 469999999999999999999999999999999999999999999999878999999999986 57788999999986 7
Q ss_pred EEEEECCCCcc
Q 000808 908 QEIYVGPLGRH 918 (1275)
Q Consensus 908 ~~~~~g~~~~~ 918 (1275)
+++..|+.++.
T Consensus 482 ~i~~~~~~~~~ 492 (506)
T PRK13549 482 KLKGDLINHNL 492 (506)
T ss_pred EEEEEeccccC
Confidence 89999887653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=588.74 Aligned_cols=205 Identities=20% Similarity=0.309 Sum_probs=170.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCC
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQND---IHSPF 777 (1275)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 777 (1275)
+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.+||++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 79999999999999999999999999999999998653 479999999875421 1345689999996 47788
Q ss_pred CCHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000808 778 VTVYESLLYSAWLRLP---PEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illl 853 (1275)
+||.|++.+....... .....++.+++++++++.+++. +..++.+ ..|||||||||+|||+|+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875311100 0012233345688999999995 5667665 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCcc
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRH 918 (1275)
Q Consensus 854 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~ 918 (1275)
||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |+++..|++++.
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 482 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA 482 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence 9999999999999999999999877999999999986 57788999999986 789999987643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-61 Score=596.96 Aligned_cols=227 Identities=21% Similarity=0.216 Sum_probs=182.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+...... .......+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 48899999887421000 0000012469999999999999999999999999999999999875 3479999999875
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000808 757 KQE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1275)
Q Consensus 757 ~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 827 (1275)
... .+++.++|++|++ .+++.+||.|++.+....+. ....++.++++.++++.+||. +..++.+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 321 2356799999997 57889999999987654321 112344556788999999996 4566665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |.|||++|||++ .+...+|++++|.+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~- 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL- 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999998765 899999999986 56788999999986
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++..|++.
T Consensus 540 G~iv~~g~~~ 549 (623)
T PRK10261 540 GQIVEIGPRR 549 (623)
T ss_pred CEEEEecCHH
Confidence 7999999874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-61 Score=591.12 Aligned_cols=202 Identities=20% Similarity=0.315 Sum_probs=167.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc----cccceEEEeccC---CCCCCC
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQN---DIHSPF 777 (1275)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ 777 (1275)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+.... ..++.+||++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 89999999999999999999999999999999998653 479999999875321 224568999998 457888
Q ss_pred CCHHHHHHHHHhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000808 778 VTVYESLLYSAWLR---LPP--E-VDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 850 (1275)
Q Consensus 778 ltv~e~l~~~~~l~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~i 850 (1275)
+||+||+.+....+ ... . ......++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCE
Confidence 99999998653211 000 0 11222335678999999996 6677776 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 851 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 851 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.+.+|++++|.+ |+++..++.
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999999999999999999998877999999999985 57788999999986 788888866
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=586.78 Aligned_cols=217 Identities=23% Similarity=0.322 Sum_probs=175.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEc-Ccc-
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 755 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 755 (1275)
++++|+++.+... ..+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 6778888776310 0112469999999999999999999999999999999999865 347999996 532
Q ss_pred --CCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 000808 756 --KKQ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-----LRQSLV 822 (1275)
Q Consensus 756 --~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~ 822 (1275)
... ...++.++|++|++.+++.+||.|++.+...+. ...+..+++++++++.+++.+ ..++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 111 112456899999998889999999998754321 122333456889999999975 345554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhh
Q 000808 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELF 901 (1275)
Q Consensus 823 ~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 901 (1275)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.+|+++
T Consensus 426 -----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 426 -----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999998764 899999999986 5778899999
Q ss_pred eeecCcEEEEECCC
Q 000808 902 LMKRGGQEIYVGPL 915 (1275)
Q Consensus 902 ~l~~gg~~~~~g~~ 915 (1275)
+|.+ |+++..|++
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9986 789988876
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=585.57 Aligned_cols=202 Identities=23% Similarity=0.320 Sum_probs=169.4
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc------cccceEEEeccCC--CC
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------TFTRISGYCEQND--IH 774 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~ 774 (1275)
+.+|+|+|++|++||+++|+||||||||||+|+|+|..+ .+|+|.++|.++... .+++.++|++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999763 379999999875321 1245689999996 47
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000808 775 SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1275)
Q Consensus 775 ~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illl 853 (1275)
++.+||.||+.+....+.. .....+.+++++++++.+++. +..+..+ ..|||||||||+|||+|+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886533211 122334456788999999997 4566655 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 854 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++ |+++..|++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999765 899999999985 56778999999986 789998876
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=583.33 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=167.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCC
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQND---IHSPF 777 (1275)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 777 (1275)
+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 68999999999999999999999999999999997653 479999999875421 1234689999984 47788
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000808 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEP 856 (1275)
+|+.|++......+..........++.++++++.+|+. +..++.+ +.|||||||||+||++|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111110011222345678999999997 6667765 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCc
Q 000808 857 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 917 (1275)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+++..|.+++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999878999999999986 57788999999985 79998887754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-60 Score=580.46 Aligned_cols=206 Identities=19% Similarity=0.300 Sum_probs=169.4
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc----ccccceEEEeccCC---CCC
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFTRISGYCEQND---IHS 775 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 775 (1275)
+.+|+|+||++++||+++|+||||||||||||+|+|..++ +.+|+|.++|.+... ...++.+||++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3599999999999999999999999999999999998652 137999999987642 12345689999995 478
Q ss_pred CCCCHHHHHHHHHh--ccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000808 776 PFVTVYESLLYSAW--LRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIF 852 (1275)
Q Consensus 776 ~~ltv~e~l~~~~~--l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~ill 852 (1275)
+.+||+|++.+... ............+++++++++.+++.+ ..++.+ ..||||||||++|||+|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 89999999987532 110001122334466889999999964 456665 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 853 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 853 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.+|++++|.+ |+++..++.+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999999888999999999986 57788999999986 7888877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-60 Score=577.45 Aligned_cols=207 Identities=19% Similarity=0.311 Sum_probs=171.0
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc----ccccceEEEeccCC---CCCC
Q 000808 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFTRISGYCEQND---IHSP 776 (1275)
Q Consensus 704 ~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~ 776 (1275)
.+++|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 38999999999999999999999999999999999865 347999999987532 12245689999986 4788
Q ss_pred CCCHHHHHHHHHhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000808 777 FVTVYESLLYSAWLRL-PPE--VDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIF 852 (1275)
Q Consensus 777 ~ltv~e~l~~~~~l~~-~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~ill 852 (1275)
.+|+.|++.+...... +.. ......++.++++++.+++. +..++.++ .|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEE
Confidence 8999999976432110 000 11223345678999999994 56777764 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCccc
Q 000808 853 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHS 919 (1275)
Q Consensus 853 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~ 919 (1275)
|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.+|++++|.+ |++++.|.+++..
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 484 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQAT 484 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccCC
Confidence 99999999999999999999999888999999999986 57789999999985 7899999886543
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-59 Score=567.47 Aligned_cols=216 Identities=17% Similarity=0.248 Sum_probs=170.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 250 ~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKI 312 (491)
T ss_pred EEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEEC
Confidence 36777776541 248999999999999999999999999999999999875 3489999999876
Q ss_pred Ccc----cccceEEEeccCC---CCCCCCCHHHHHHHHH--hccCCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 000808 757 KQE----TFTRISGYCEQND---IHSPFVTVYESLLYSA--WLRLPPE-VDSETQKMFIEEIMELVELN-PLRQSLVGLP 825 (1275)
Q Consensus 757 ~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~--~l~~~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 825 (1275)
... ..++.++|++|+. .+++.+|+.++..+.. ....... ......++.++++++.+++. +..++.+
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 389 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--- 389 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc---
Confidence 431 1244589999985 3678888887743221 0000001 12223345678899999995 4456665
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++...+|++++|.+
T Consensus 390 --~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~ 466 (491)
T PRK10982 390 --GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN 466 (491)
T ss_pred --ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998878999999999986 57789999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..+++.
T Consensus 467 -g~i~~~~~~~ 476 (491)
T PRK10982 467 -GLVAGIVDTK 476 (491)
T ss_pred -CEEEEEEccc
Confidence 7888777664
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=558.49 Aligned_cols=215 Identities=20% Similarity=0.292 Sum_probs=167.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+. ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 488999988773 23599999999999999999999999999999999996431 1379999999764
Q ss_pred Cc----ccccceEEEeccCCCCCCC--CCHHHHHHHHHhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000808 757 KQ----ETFTRISGYCEQNDIHSPF--VTVYESLLYSAWL--RLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGE 827 (1275)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~~~~~--ltv~e~l~~~~~l--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 827 (1275)
.. ...++.++|++|++.++.. .|+++++.+...- ....... .+.+++++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 1234568999998765433 4677766543210 1111111 223456889999999987 667665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHH-hhhhhheeec
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-SFDELFLMKR 905 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~~~~l~~ 905 (1275)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|.+
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 4699999999999999999999999999999999999999999999998765 57999999986 4555 5799999986
Q ss_pred CcEEEEEC
Q 000808 906 GGQEIYVG 913 (1275)
Q Consensus 906 gg~~~~~g 913 (1275)
|+++..-
T Consensus 479 -G~i~~~~ 485 (490)
T PRK10938 479 -GDIYRYV 485 (490)
T ss_pred -CceEEee
Confidence 6766543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=487.02 Aligned_cols=452 Identities=24% Similarity=0.314 Sum_probs=350.2
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCC--CCceeEEEEECCccCCCccc-------cceEEEeccccc--cCCCCCHHHHHHH
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDS--KLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDV--HIGEMTVRETLAF 70 (1275)
Q Consensus 2 ~~ilG~~GsGKSTLl~~L~G~~~~--~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~--~~~~lTv~e~l~f 70 (1275)
+||||.||||||-..+.++|+++. ....+|+|.++|.++-.... ...|++++|+|- +-|-.|+...+.-
T Consensus 39 lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E 118 (534)
T COG4172 39 LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118 (534)
T ss_pred EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHH
Confidence 699999999999999999999875 34468999999998744321 147999999864 4455688888877
Q ss_pred HHhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCcccccccccc
Q 000808 71 SARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1275)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1275)
..+++.-. ...+++.++-++|+..|+++..... +.+++.||||||
T Consensus 119 ~l~~Hrg~---------------------------------~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqR 163 (534)
T COG4172 119 VLRLHRGL---------------------------------SRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQR 163 (534)
T ss_pred HHHHHhcc---------------------------------cHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchh
Confidence 66554210 1112333456789999999876543 578999999999
Q ss_pred chhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecCh
Q 000808 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~ 230 (1275)
|||.||.||+.+|++|+-||||++||.....+|.+.|+++.+.. +-.++.|+|+..-+-+++|||.||.+|++++.|+.
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 99999999999999999999999999999999999999987654 67777899999999999999999999999999976
Q ss_pred hhHHHHHHhCCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhHHHHHhhcCCcccCCCCC
Q 000808 231 ELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHP 310 (1275)
Q Consensus 231 ~~~~~~f~~~G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1275)
+.+.. + |.| |
T Consensus 243 ~~lF~---~-----PqH-------------------------p------------------------------------- 252 (534)
T COG4172 243 ETLFA---A-----PQH-------------------------P------------------------------------- 252 (534)
T ss_pred HHHhh---C-----CCC-------------------------h-------------------------------------
Confidence 55431 0 000 0
Q ss_pred ccccccccccCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCccceehHHHHHHHHHH
Q 000808 311 AALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTM 390 (1275)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~~g~~f~~i~~~~ 390 (1275)
| . |.+.
T Consensus 253 -------Y-----------T-r~Ll------------------------------------------------------- 258 (534)
T COG4172 253 -------Y-----------T-RKLL------------------------------------------------------- 258 (534)
T ss_pred -------H-----------H-HHHH-------------------------------------------------------
Confidence 0 0 0000
Q ss_pred HhhhHHHHHHhhcchhHHHhhhcCCcchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHH
Q 000808 391 FNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQM 470 (1275)
Q Consensus 391 ~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~l~~~i~~~p~~~~~~~~~~~i~Y~l~gl~~~~g~~~~~~l~~~l~~~~ 470 (1275)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccccccCCCccchhhhhHhhCHHHHHHHHHHHhHcCCCccccccCCCc
Q 000808 471 ASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTSNSN 550 (1275)
Q Consensus 471 ~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~~~~~~ 550 (1275)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHhhhcCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeccCCcccccCCcCCCCcccccCCCC
Q 000808 551 ETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSN 630 (1275)
Q Consensus 551 ~~~g~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1275)
.
T Consensus 259 --------~----------------------------------------------------------------------- 259 (534)
T COG4172 259 --------A----------------------------------------------------------------------- 259 (534)
T ss_pred --------h-----------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCcccccccchhhhhcccccccccccCccCCCcccCCCCcEEEEEeEEEEEeccchhhhccccccccceeeceE
Q 000808 631 SSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVS 710 (1275)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs 710 (1275)
.+|.. . .....+..+..++.+|++..++.+..+-.. ..+...++++||
T Consensus 260 -aeP~g---~--------------------------~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~is 307 (534)
T COG4172 260 -AEPSG---D--------------------------PPPLPEDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGIS 307 (534)
T ss_pred -cCCCC---C--------------------------CCCCCCCCCceEEecceEEEEecCCccccc--cchheEEeccce
Confidence 00000 0 000000123457777777766654322111 123456999999
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc------ccccceEEEeccCCC--CCCCCCHHH
Q 000808 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETFTRISGYCEQNDI--HSPFVTVYE 782 (1275)
Q Consensus 711 ~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~--~~~~ltv~e 782 (1275)
+++++||.+||+|.||||||||-.+|.+...+ +|+|.++|.++.. ...++.+-.|+|||. +.|.+||.+
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~q 384 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence 99999999999999999999999999997753 4999999998753 234667889999985 678999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000808 783 SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861 (1275)
Q Consensus 783 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD 861 (1275)
-+.-+.....+ ..+..++++++.++++.+||.+.. +++ +.++|||||||++|||||+.+|++++||||||+||
T Consensus 385 II~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 385 IIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred HhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 98877666543 457788999999999999997642 332 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 862 ARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 862 ~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
-.-+.+|+++|+++.+ .|.+-++++||+. -+-.++|++++|.+ |++|..||.
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 9999999999999875 4899999999986 46789999999996 899999996
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=546.24 Aligned_cols=198 Identities=18% Similarity=0.255 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 589999998873 2359999999999999999999999999999999999865 34799999873
Q ss_pred CcccccceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000808 757 KQETFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 833 (1275)
+.+||++|++. +.+.+|++|++.+.. .. . ..+++++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 45899999864 556799999986421 11 1 1134578899999994 5566665 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE-EE
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI-YV 912 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~ 912 (1275)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||++||+++ .+...+|++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999985 56778999999986 6776 77
Q ss_pred CCC
Q 000808 913 GPL 915 (1275)
Q Consensus 913 g~~ 915 (1275)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 765
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-55 Score=538.63 Aligned_cols=201 Identities=21% Similarity=0.304 Sum_probs=163.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 488999998763 2469999999999999999999999999999999999865 3479999853 1
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000808 757 KQETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGe 834 (1275)
..+||++|+. .+++.+||+|++.+...... .... +...+++++.+++.+ ..+..+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999996 67788999999987643221 1111 123457899999964 456655 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE-EEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI-YVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g 913 (1275)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+...+|++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999975 5777899999998767765 455
Q ss_pred C
Q 000808 914 P 914 (1275)
Q Consensus 914 ~ 914 (1275)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=534.69 Aligned_cols=201 Identities=19% Similarity=0.281 Sum_probs=163.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 488999988763 2469999999999999999999999999999999999865 3479999854 1
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000808 757 KQETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGe 834 (1275)
..+||++|+. .+++.+||.|++.+...... .... +...+++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999987643211 1111 123557899999964 456655 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE-EEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI-YVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g 913 (1275)
||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|||++||+++ .+...+|++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 38999999975 5667899999998766766 444
Q ss_pred C
Q 000808 914 P 914 (1275)
Q Consensus 914 ~ 914 (1275)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-54 Score=527.89 Aligned_cols=198 Identities=23% Similarity=0.251 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++ + ..|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 478889887663 1 25899999999999999999999999999999999865 347999885
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1479999998888889999999864211 111 124678999999988777776 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999975 4667899999996 377777764
Q ss_pred C
Q 000808 916 G 916 (1275)
Q Consensus 916 ~ 916 (1275)
.
T Consensus 538 ~ 538 (590)
T PRK13409 538 S 538 (590)
T ss_pred C
Confidence 3
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=520.08 Aligned_cols=197 Identities=22% Similarity=0.357 Sum_probs=160.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++ ++.+|+|+|++|++||++||+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 588999998773 2469999999999999999999999999999999999865 34799998641
Q ss_pred CcccccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000808 757 KQETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgG 833 (1275)
..+||++|+. .+.+..|+.+++.- . .. ...++.+.++++.+++.. ..++.+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 1 11 122345788999999963 556665 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE-EE
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI-YV 912 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~ 912 (1275)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ . .|||++|||+. .+...+|++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999975 46778999999986 6776 78
Q ss_pred CCC
Q 000808 913 GPL 915 (1275)
Q Consensus 913 g~~ 915 (1275)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 876
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-52 Score=519.99 Aligned_cols=202 Identities=23% Similarity=0.336 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC-
Confidence 588999998773 2469999999999999999999999999999999999865 34799988 432
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHH
Q 000808 757 KQETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGe 834 (1275)
-.+||++|+. .+++.+||.|++.+.... . ... .....+.++++.+++. +..++.+ +.|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 1489999975 578889999999865321 1 111 1133577889999985 3456665 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee-cCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK-RGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-~gg~~~~~g 913 (1275)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...+|+++++. +|.-..|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999975 5667899999997 544344556
Q ss_pred CC
Q 000808 914 PL 915 (1275)
Q Consensus 914 ~~ 915 (1275)
+-
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 53
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=466.92 Aligned_cols=202 Identities=20% Similarity=0.363 Sum_probs=167.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc----cccceEEEeccC---CCCCCC
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQN---DIHSPF 777 (1275)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ 777 (1275)
.++|+||++++||++||-|-=|||+|-|+++|.|..+ ...|+|.+||++.... ..+.-++|||.| +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 5789999999999999999999999999999999654 3479999999986532 234568999976 457888
Q ss_pred CCHHHHHHHHHhccCC-C-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000808 778 VTVYESLLYSAWLRLP-P-EVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlD 854 (1275)
+++.||+.++...+.. . -.+....++.+++..+.+++.... +..+ ..||||.+|||.|||.|..+|+|||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999999887332211 1 234445556788899999886432 3333 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 855 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
|||.|+|..+..+|.+++++++++|++||++|-+.. |+..++|||++|.+ |+++-.=+.
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~ 485 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDR 485 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEecc
Confidence 999999999999999999999999999999999985 89999999999996 787764443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=472.21 Aligned_cols=199 Identities=26% Similarity=0.348 Sum_probs=157.9
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
+..++++|+++.++ +++.+++++||.|++|+.+||+||||+|||||||+|+|...+ .+|.|.+.-
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~- 383 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGE- 383 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCC-
Confidence 34689999998874 235799999999999999999999999999999999997653 378887742
Q ss_pred cCCcccccceEEEeccCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCH
Q 000808 755 PKKQETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESGLST 832 (1275)
Q Consensus 755 ~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSg 832 (1275)
.-.+||..|+. .+.+..|+.|++.-.. .... +..+...+..+++.... .+.+ +.|||
T Consensus 384 -------~v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~v-----~~LSG 442 (530)
T COG0488 384 -------TVKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKPV-----GVLSG 442 (530)
T ss_pred -------ceEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCch-----hhcCH
Confidence 13479999986 3347779999985321 1111 44578889999986533 3444 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|||.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. ..|||++|||.. -+-..+++++++.+ +-..|.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~ 517 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFE 517 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcC
Confidence 9999999999999999999999999999999999999999886 469999999965 46678889998875 333444
Q ss_pred CC
Q 000808 913 GP 914 (1275)
Q Consensus 913 g~ 914 (1275)
|.
T Consensus 518 g~ 519 (530)
T COG0488 518 GG 519 (530)
T ss_pred CC
Confidence 54
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=496.63 Aligned_cols=200 Identities=19% Similarity=0.281 Sum_probs=157.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++ +++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~--- 570 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSA--- 570 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECC---
Confidence 588999998873 12359999999999999999999999999999999999865 3479998865
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGer 835 (1275)
+..+||++|+. .+.+++.++.........+ ... ++.++++++.+|+.+ ..+..+ ..||||||
T Consensus 571 -----~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 571 -----KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred -----ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 23589999975 3445666664322111111 111 245778999999974 455554 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE-EECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI-YVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g~ 914 (1275)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. + .|||++||++. .+...+|++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888765 3 49999999975 46678999999986 6777 7776
Q ss_pred C
Q 000808 915 L 915 (1275)
Q Consensus 915 ~ 915 (1275)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=422.95 Aligned_cols=222 Identities=19% Similarity=0.309 Sum_probs=180.5
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++...+ .....+++|||++++||++||.|-.|-|-+.|+.+|+|..+. .+|+|.++|.+
T Consensus 256 ~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~ 321 (501)
T COG3845 256 VVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKD 321 (501)
T ss_pred eEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEe
Confidence 4688888876532 123589999999999999999999999999999999997653 35999999998
Q ss_pred C-C---c-ccccceEEEeccCCC---CCCCCCHHHHHHHHHhccC----CCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 000808 756 K-K---Q-ETFTRISGYCEQNDI---HSPFVTVYESLLYSAWLRL----PPEVDSETQKMFIEEIMELVELNPLRQSLVG 823 (1275)
Q Consensus 756 ~-~---~-~~~~~~~~~v~q~~~---~~~~ltv~e~l~~~~~l~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 823 (1275)
. . . ...+.-++|||.|.. +.+.+|+.||+.+...-+- ..-.+....++...++++.++.....-..
T Consensus 322 v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-- 399 (501)
T COG3845 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-- 399 (501)
T ss_pred ccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc--
Confidence 6 2 1 123346899999863 5688999999976643211 11244566677889999999886332111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 824 ~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
..+.||||++||+-+||+|.++|++|+..+||.|||..+...|.+.|.+.+++|+.|++++-+++ ++++++|+|.+|
T Consensus 400 --~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi 476 (501)
T COG3845 400 --PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVI 476 (501)
T ss_pred --chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeee
Confidence 13579999999999999999999999999999999999999999999999999999999999997 799999999999
Q ss_pred ecCcEEEEECCCCc
Q 000808 904 KRGGQEIYVGPLGR 917 (1275)
Q Consensus 904 ~~gg~~~~~g~~~~ 917 (1275)
.+ |+++...++++
T Consensus 477 ~~-Gri~~~~~~~~ 489 (501)
T COG3845 477 YE-GRIVGIVPPEE 489 (501)
T ss_pred eC-Cceeccccccc
Confidence 96 79988888754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=372.92 Aligned_cols=214 Identities=26% Similarity=0.372 Sum_probs=189.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. +..+|+|||++|++||+++|+|||||||||||++|.+... +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~fg-------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSFG-------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEeC-------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 67888887773 4679999999999999999999999999999999999876 45899999997543
Q ss_pred ----cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 758 ----QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 758 ----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
....|+.+|+|+|+..+||++||.||+..+-..- ...++++.+++..++|+.+||.+.+|.+. .+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2346788999999999999999999998874321 24567777888999999999999998875 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|||||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|+|++||+... .-+.+||++.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999763 5578999999995 7999999
Q ss_pred CC
Q 000808 914 PL 915 (1275)
Q Consensus 914 ~~ 915 (1275)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 76
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=370.84 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=186.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.|+ .+ ++|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 589999999985 12 59999999999999999999999999999999999766 3589999999887
Q ss_pred CcccccceEEEeccCCCCC--CCCCHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQETFTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLP--PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~l~~~--~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
....-+..+|||||...+. .-+||+|.+..+...+.+ .... ++.++.++++|+.+|+.+.+|+.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 6544456899999964322 237999999876432221 1122 3336789999999999999999986 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.++||+++.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999997 5889999999997 479999
Q ss_pred CCCCcc
Q 000808 913 GPLGRH 918 (1275)
Q Consensus 913 g~~~~~ 918 (1275)
|++++.
T Consensus 220 G~~~~~ 225 (254)
T COG1121 220 GPPEEV 225 (254)
T ss_pred cChhhc
Confidence 999653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=372.07 Aligned_cols=218 Identities=23% Similarity=0.331 Sum_probs=191.4
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++++++.+... ..+...+|+|||++|++||++||+|+||||||||++++.+... +.+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5788888766421 1123569999999999999999999999999999999999876 45899999997754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 Q------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
. ...|+.+|+++|+..++...||+||+.|...+. ..++++.++++.++++.+||.+.++.+. .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 2 245788999999999999999999999988765 3568889999999999999999888875 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
|||||||+|||||+.+|+||++|||||+|||++...|.+.|+++.++ |.||+++||+++ -+-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999975 36678999999996 8999
Q ss_pred EECCC
Q 000808 911 YVGPL 915 (1275)
Q Consensus 911 ~~g~~ 915 (1275)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99986
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=359.39 Aligned_cols=230 Identities=27% Similarity=0.374 Sum_probs=198.0
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++++++++ +.+.|++|||++|++||+++||||||+|||||||+|.|..++ .+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcc
Confidence 468999998776 456799999999999999999999999999999999998774 48999999998
Q ss_pred CCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCC
Q 000808 756 KKQ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPGES 828 (1275)
Q Consensus 756 ~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~ 828 (1275)
+.. ...+++.|+++|+..+|..+||+||+.|..+ .....+++..++.+..-++.+||... .+.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 643 1346779999999999999999999988653 23345667777888888999999877 5554 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
+||||+|||+++|||++.+|+++|+||||+||||.++..+.++++++.++ |.|++++|||.+ +++..+|++++|.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 89999999999999999999999999999999999999999999999876 999999999987 68999999999996 7
Q ss_pred EEEEECCCCccc----hHHHHHHhcC
Q 000808 908 QEIYVGPLGRHS----CHLIRYFEGI 929 (1275)
Q Consensus 908 ~~~~~g~~~~~~----~~~~~~f~~~ 929 (1275)
+++..|++++.. ..+.+||...
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 999999985422 2366777654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=361.22 Aligned_cols=214 Identities=26% Similarity=0.367 Sum_probs=191.9
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++|+|+++.+. ++.+++|+|++|++||+++++|||||||||+||+|.+... +.+|+|.+||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 57888887763 4579999999999999999999999999999999999877 45899999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000808 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESGLST 832 (1275)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSg 832 (1275)
. ..+|+.+|||-|.-.+||++||.||+.+.-.+. ..++++.+++++|+++.+||.+ +++++. .+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYP-----HELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----hhcCc
Confidence 4 357889999999999999999999998776554 5678888999999999999975 666663 68999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||+|||.+||||+.+|+|+++|||+++|||-++..+++.++++.++ |+|||++|||.+ +.+.+.||+++|++ |+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 999999999987 78899999999995 89999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
+++++
T Consensus 217 ~~~P~ 221 (309)
T COG1125 217 YDTPD 221 (309)
T ss_pred eCCHH
Confidence 99874
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=356.48 Aligned_cols=225 Identities=25% Similarity=0.320 Sum_probs=190.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|++..|+ +++++|+|||++|++||+++|+|||||||||||++|.|..+ +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478999987773 45679999999999999999999999999999999999766 4589999999765
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000808 757 KQ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825 (1275)
Q Consensus 757 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 825 (1275)
.. ..+++.+|+++|++.+.+.++|.+|+..+..-+.+ .....++.+..+-+.|+.+|+.+.+-+..+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 24577899999999999999999999876322211 122334455667889999999998887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.|||||+|||+|||||+.+|+|++.|||+++|||.+++.+|+.|+++.+ +|.|||++.||.+. ..++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 6999999999999999999999999999999999999999999999975 49999999999864 568999999999
Q ss_pred cCcEEEEECCCCccchHH
Q 000808 905 RGGQEIYVGPLGRHSCHL 922 (1275)
Q Consensus 905 ~gg~~~~~g~~~~~~~~~ 922 (1275)
+ |+++|+||+++..++.
T Consensus 223 ~-G~ivfDg~~~el~~~~ 239 (258)
T COG3638 223 A-GRIVFDGPASELTDEA 239 (258)
T ss_pred C-CcEEEeCChhhhhHHH
Confidence 6 8999999997654443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=390.53 Aligned_cols=215 Identities=31% Similarity=0.444 Sum_probs=190.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|++..+. .++.+|+||||+|++||++||+||||||||||+|+|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 366788887763 136799999999999999999999999999999999998764 589999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 757 KQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. +..+++++++++.+||.+.+++.+ ++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHH
Confidence 54 3567789999999999999999999999999886432 445668999999999998665555 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|||++||+||+++|++|||||||+||||.++..+++.|++++++| +||+++||+++ ++...||++++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999986 68888999999996 7999999
Q ss_pred CC
Q 000808 914 PL 915 (1275)
Q Consensus 914 ~~ 915 (1275)
++
T Consensus 220 ~~ 221 (293)
T COG1131 220 TP 221 (293)
T ss_pred CH
Confidence 76
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=363.02 Aligned_cols=204 Identities=25% Similarity=0.372 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.+.++++++++. ...+|+|||++|++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 477888888774 2569999999999999999999999999999999999877 3589999999887
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
.. ....++||+|++.++|.+||+||+.++...+. .++++++++++++++.+||.+..|... .+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 32 34568999999999999999999999877653 345666778999999999999998875 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
||+|||||+.+|+||+||||+++||+.++..+++.|.++.+ .++||+++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999765 4899999999997 677899999999863
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=372.74 Aligned_cols=219 Identities=27% Similarity=0.397 Sum_probs=189.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++.+|++++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 378899999884 4579999999999999999999999999999999999766 3489999999987
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ..+.+.++||||.....+.+||+|.+.++..-.... ....++.++.++++++.+|+.+.+++.+. .|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 54 345678999999998888999999998874321111 11233444578999999999999999874 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||||||.|||||+++|+||+||||||.||...+.+++++++++.+ +|+|||+++||++. ...++|++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999985 59999999999984 6789999999996 79999
Q ss_pred ECCCCc
Q 000808 912 VGPLGR 917 (1275)
Q Consensus 912 ~g~~~~ 917 (1275)
.|++.+
T Consensus 220 ~G~p~e 225 (258)
T COG1120 220 QGTPEE 225 (258)
T ss_pred ecCcch
Confidence 999854
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=358.57 Aligned_cols=208 Identities=28% Similarity=0.417 Sum_probs=175.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++..+... .....+|++||++|++||+++|+|||||||||||++|.|...+ .+|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 3467777666422 1125799999999999999999999999999999999998764 5899999997754
Q ss_pred c-------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCC
Q 000808 758 Q-------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ-SLVGLPGESG 829 (1275)
Q Consensus 758 ~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~ 829 (1275)
. ..+++.+|||+|+..+.|++||+||+.....+... .....+++++++++.+||.+..+ ..+ .+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKKP-----SE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCCc-----hh
Confidence 2 12345799999999999999999999987655432 22255677889999999986665 544 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
|||||||||+|||||+.+|++++.||||.+||+.++..|+++++++.++ |+|||++|||+ ++...+||++.|.+|
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG 218 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDG 218 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999865 89999999996 578899999999974
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=342.89 Aligned_cols=201 Identities=28% Similarity=0.383 Sum_probs=184.1
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCHH
Q 000808 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFTRISGYCEQNDIHSPFVTVY 781 (1275)
Q Consensus 704 ~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~ 781 (1275)
++++||||+++.||++||+|||||||||+|++|++...+ .+|.|.+||.+..+ ...++.+|.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 489999999999999999999999999999999998763 48999999998643 45678899999888899999999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000808 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861 (1275)
Q Consensus 782 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD 861 (1275)
|||.|.+.+. +....+.+.+++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|+++++||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999999876 45566778889999999999999999986 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 862 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 862 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
..+.+.+.+.++++.++|++||++||..+ ++.++||+++++++ |++++.|++.
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 99999999999999888999999999985 78889999999997 7999999874
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=402.79 Aligned_cols=218 Identities=22% Similarity=0.339 Sum_probs=188.2
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
...++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 926 ~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~ 992 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGK 992 (2272)
T ss_pred CceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCE
Confidence 347999999988731 23569999999999999999999999999999999999876 34899999998
Q ss_pred cCCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 755 PKKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 755 ~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
++.. ...++.+|||+|++.+++.+||+|++.|.++++. ...++.+++++++++.+||.+..++.+ +.|||
T Consensus 993 dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSG 1064 (2272)
T TIGR01257 993 DIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSG 1064 (2272)
T ss_pred ECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 8643 2345679999999999999999999999876652 223444567899999999998888776 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
||||||+||+||+.+|+|++|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++..++||+++|++ |+++..
T Consensus 1065 GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~ 1141 (2272)
T TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCS 1141 (2272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999985 5999999999985 56678999999996 799999
Q ss_pred CCCC
Q 000808 913 GPLG 916 (1275)
Q Consensus 913 g~~~ 916 (1275)
|++.
T Consensus 1142 Gs~~ 1145 (2272)
T TIGR01257 1142 GTPL 1145 (2272)
T ss_pred cCHH
Confidence 9873
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=332.11 Aligned_cols=213 Identities=25% Similarity=0.349 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
+.|+||+..|. +.+++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 56888877664 33579999999999999999999999999999999999765 35899999999864
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 Q------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
. ..+||++|+|+||..+.++.||+||+.|..... .....+.++++.++|+.+||.+.++... .+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccC
Confidence 3 135788999999999999999999999987665 3456677889999999999999887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh-hhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF-DELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~-d~~~~l~~gg~~~ 910 (1275)
|||+|||+||||++.+|++|+.||||.+|||..+..|++++.++.+.|.||++.|||. ++.+.. .+++.|.+ |+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~-Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALED-GRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeC-CEEE
Confidence 9999999999999999999999999999999999999999999998899999999985 455544 56677765 7888
Q ss_pred EECCC
Q 000808 911 YVGPL 915 (1275)
Q Consensus 911 ~~g~~ 915 (1275)
.....
T Consensus 217 ~d~~~ 221 (223)
T COG2884 217 RDESR 221 (223)
T ss_pred ecccc
Confidence 76543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=375.55 Aligned_cols=215 Identities=27% Similarity=0.396 Sum_probs=193.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|++..+. +..+|+|+|++|++||+++|+||||||||||||+|+|..+ +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578899988773 1129999999999999999999999999999999999876 4589999999987
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 757 KQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 757 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
+. ...+|.+++|+|+..+||+|||+||+.|+.+++ ..++++.+++|+++.+.|+|.+..|++. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 65 345688999999999999999999999998776 3467788899999999999999999885 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. +...++||+.+|. +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999974 7889999999999 489999998
Q ss_pred CC
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
+.
T Consensus 218 p~ 219 (338)
T COG3839 218 PL 219 (338)
T ss_pred hH
Confidence 84
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=358.38 Aligned_cols=207 Identities=29% Similarity=0.445 Sum_probs=185.9
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc---cCCc-ccccceEEEeccCCCCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFTRISGYCEQNDIHSP 776 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~ 776 (1275)
+...+++|||+.|+.||++|++|||||||||||++|+|...+ ..|.|.+||. +... ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 345699999999999999999999999999999999998763 4899999998 5544 334578999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000808 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1275)
Q Consensus 777 ~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEP 856 (1275)
+|||.||+.|+.+.+ ....++.+.+.+++++|+.+.|++..+.+. .+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998777 334556778889999999999999998875 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCc
Q 000808 857 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 917 (1275)
+++||..-+..+.+.|+++.++ |.|++++|||+. +.++.+||+++|++ |++...||+++
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 9999999999999999998876 999999999986 79999999999996 79999999853
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=334.95 Aligned_cols=219 Identities=23% Similarity=0.309 Sum_probs=187.5
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCC---CCceEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~---~~~~~~G~i~~~ 752 (1275)
..++.+|+++.|. ++.+|+|||+.|++++++|+||||||||||||+++.... ++-.++|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 4588889988773 467999999999999999999999999999999999743 344678999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCC
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR-QSLVGLPG 826 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~ 826 (1275)
|+++.. ..+|+.+|.|+|.+.-|| +|++||+.|+.++.... +++.++.|++.|+...|++.. |.+-..
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 998643 246889999999999999 99999999998776432 266788899999999987643 433222
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
..+|||||+||+||||||+.+|+||+||||||+|||.+...|-+++.++++ .-|||++||.+. ......|+..++..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~- 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYL- 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcc-
Confidence 347999999999999999999999999999999999999999999999974 689999999985 56788999999996
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++.+|+++
T Consensus 224 G~LvE~g~T~ 233 (253)
T COG1117 224 GELVEFGPTD 233 (253)
T ss_pred cEEEEEcCHH
Confidence 7999999973
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=376.47 Aligned_cols=217 Identities=27% Similarity=0.382 Sum_probs=194.3
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++.++. +..+|+|+|++|++||+++|+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence 4688999988773 4579999999999999999999999999999999999876 348999999998
Q ss_pred CCcc-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 756 KKQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 756 ~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
+... ..+|.+|+|+|+..+||+|||.||+.|+.+++ ....+++.+++++++++.++|.+..++.+ .+|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHH
Confidence 7653 35788999999999999999999999998743 23445667889999999999999988876 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||+|||||+.+|++|+||||.|+||..-+.++...++++.++ |.|.|++|||.. +.+.+.|||.+|++ |++...|
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~g 219 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVG 219 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecC
Confidence 99999999999999999999999999999999999999998765 999999999985 78899999999996 7999999
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
++.
T Consensus 220 tP~ 222 (352)
T COG3842 220 TPE 222 (352)
T ss_pred CHH
Confidence 884
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=369.98 Aligned_cols=202 Identities=21% Similarity=0.265 Sum_probs=154.8
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
|..+.++|+++.++. +..++++++|-+.+++.+|++||||+|||||||++.|... +..|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 346889999988752 2269999999999999999999999999999999999765 34666543221
Q ss_pred cCCcccccceEEEeccC--CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 000808 755 PKKQETFTRISGYCEQN--DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESGLS 831 (1275)
Q Consensus 755 ~~~~~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lS 831 (1275)
-..++..|+ +.+.-+.++-|+++=.. + .+...+.+..++..+||.... +..+ ++||
T Consensus 453 --------~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS 511 (614)
T KOG0927|consen 453 --------NKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQVVPM-----SQLS 511 (614)
T ss_pred --------ccchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCccccccch-----hhcc
Confidence 112333333 22333456777664211 1 123345678899999998544 3343 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
+|||+||.+|+.++..|.+|+|||||+|||..+...+-+.|.+. ..+||+++||.. -+-+..+++.+..+++...+
T Consensus 512 ~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 512 DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999999999999999888875 458999999986 47788999999998888888
Q ss_pred ECCC
Q 000808 912 VGPL 915 (1275)
Q Consensus 912 ~g~~ 915 (1275)
.|..
T Consensus 588 ~G~i 591 (614)
T KOG0927|consen 588 DGDI 591 (614)
T ss_pred CccH
Confidence 8864
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=335.62 Aligned_cols=191 Identities=23% Similarity=0.350 Sum_probs=163.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC----ccccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE----FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~----~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+|||||||||||++|.|+..|+ +|+|.++|.++.. ...|+.+|+|+|+..+||.+||.||+..+...-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v- 105 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV- 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH-
Confidence 47899999999999999999999987 9999999976632 134678999999999999999999999864210
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. ...++++....++|+.+||.+.+| .++..|||||||||+||
T Consensus 106 --------~~------------------------~~k~eA~~~A~~lL~~VGL~~ka~-----~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 106 --------KK------------------------LSKAEAREKALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIA 148 (240)
T ss_pred --------cC------------------------CCHHHHHHHHHHHHHHcCchhhhh-----hCccccCcHHHHHHHHH
Confidence 00 112234445677899999998876 45778999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||+.+|+++|+|||||+|||....++.+.++++++. +.|.+.++|.+.-+.+.+|||+.|++|++++.|+++++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999863 566666899999999999999999999999999988764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=370.10 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=188.4
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|+++.+. ++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3588999998873 2469999999999999999999999999999999999876 348999999998
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 756 KKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 756 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
... ...++.+||++|++.+++.+||+||+.|.+.++ ..+..+..++++++++.++|.+..++.+ ++||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 234577999999999999999999999876553 2233444567889999999998888876 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 67788999999996 7999999
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
+++
T Consensus 221 ~~~ 223 (306)
T PRK13537 221 APH 223 (306)
T ss_pred CHH
Confidence 873
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=330.67 Aligned_cols=207 Identities=26% Similarity=0.355 Sum_probs=183.5
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCccc----ccceEEEeccCCCCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FTRISGYCEQNDIHSP 776 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~ 776 (1275)
++++++++||+.|++||++|++|||||||||.+.++.|...+ .+|+|.+||.+++... .+.-+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 456799999999999999999999999999999999998763 4899999999876532 2345899999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000808 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1275)
Q Consensus 777 ~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEP 856 (1275)
.+||+||++.....+.. +....+++++.+++++.+++.|+++.+. ..||||||||+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999887766632 2233466677889999999999999875 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCc
Q 000808 857 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 917 (1275)
++|+||-+...|.++++.+.+.|.-|++|-|+.+ +....+||.+++.+ |+++.+|.+++
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 9999999999999999999999999999999987 78999999999997 79999999853
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=316.09 Aligned_cols=197 Identities=27% Similarity=0.346 Sum_probs=173.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc-cccceEEEeccCCCCCCCCCHHHHHHH
Q 000808 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFTRISGYCEQNDIHSPFVTVYESLLY 786 (1275)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~ 786 (1275)
..+++|++||++||+||||||||||||.|+|... +.+|+|+|||.+.... ...|-++.++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 5678899999999999999999999999999876 3489999999987542 355678999999999999999999987
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000808 787 SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866 (1275)
Q Consensus 787 ~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~ 866 (1275)
+..-.+ .. ..+.+++++.++..+||..+.+++.+ +|||||||||++||+|+++-+|++||||+|.|||.-+.
T Consensus 95 Gl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643222 12 34456779999999999999988864 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 867 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 867 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
++..++.+++++ +.|++++||+|+ +.....|+++++++ |++.+.|+..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 999999998754 899999999997 78899999999996 7999999863
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=366.52 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=186.7
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++.. ...+.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6789999887411 0124699999999999999999999999999999999998763 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. ..++.+||++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|... +.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999876533 2344556677899999999998888775 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 56688999999985 7999
Q ss_pred EECCCC
Q 000808 911 YVGPLG 916 (1275)
Q Consensus 911 ~~g~~~ 916 (1275)
..|++.
T Consensus 221 ~~g~~~ 226 (343)
T TIGR02314 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999863
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=369.70 Aligned_cols=216 Identities=25% Similarity=0.365 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|++++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 378899988762 12469999999999999999999999999999999999876 3589999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 757 KQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 757 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
.. ...++.+|||+|++.++|++||+||+.|+...+ ..++.+.+++++++++.+||.+..+..+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 123467999999999999999999999986543 2344556678899999999998888776 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999998765 899999999985 68899999999985 89999998
Q ss_pred CC
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
+.
T Consensus 219 ~~ 220 (356)
T PRK11650 219 PV 220 (356)
T ss_pred HH
Confidence 74
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=331.80 Aligned_cols=217 Identities=27% Similarity=0.344 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++.+|++..++... ...++|+|||++|.+||++||+|+||||||||.++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 478899988875321 123699999999999999999999999999999999998763 589999999876
Q ss_pred Ccc----cccceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCC
Q 000808 757 KQE----TFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESG 829 (1275)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~ 829 (1275)
... .+.+.+.+|+||+. +.|..||++.+.-.... ...++. ++++.++++.+||.+.. ++. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 442 35678999999986 66889999988655432 223332 33489999999997533 333 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
||||||||+||||||+.+|++|+||||||+||+..+.+|+++|.++.++ +.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 789999999986 47789999999996 79
Q ss_pred EEEECCCC
Q 000808 909 EIYVGPLG 916 (1275)
Q Consensus 909 ~~~~g~~~ 916 (1275)
++..++.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999974
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=368.70 Aligned_cols=215 Identities=26% Similarity=0.368 Sum_probs=189.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 488999998873 2459999999999999999999999999999999999876 3589999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 757 KQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 757 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..+..+.+++++++++.++|.+..++.. .+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999986543 2345566778999999999999888765 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||+|||||+.+|++++||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68899999999996 79999998
Q ss_pred CC
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
+.
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 74
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=366.46 Aligned_cols=215 Identities=24% Similarity=0.378 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 588999998873 2459999999999999999999999999999999999876 3489999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 757 KQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 757 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
... ..++.+|||+|+..++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..++.. ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 532 23467999999999999999999999987543 2345566778999999999998887765 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 67889999999996 79999998
Q ss_pred CC
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
++
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 74
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=350.74 Aligned_cols=213 Identities=25% Similarity=0.356 Sum_probs=180.6
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5778887763 23599999999999999999999999999999999998653 48999999987542
Q ss_pred ------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 759 ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 759 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
..+++.++|++|++.+++.+||.||+.+...... ..+.++.+++++++++.+++.+..++.+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 1245679999999999999999999988643221 1234444567889999999988777665 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++...+|++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 56778999999986 78999
Q ss_pred ECCC
Q 000808 912 VGPL 915 (1275)
Q Consensus 912 ~g~~ 915 (1275)
.|++
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 9876
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=364.36 Aligned_cols=216 Identities=26% Similarity=0.377 Sum_probs=187.6
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 3589999998873 34699999999999999999999999999999999998763 48999999988
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 756 KKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 756 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
... ...++.+||++|++.+++.+|++|++.+.+.+.. .+..+..++++++++.++|.+..++.++ .||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHH
Confidence 643 2345679999999999999999999987665431 2333445567889999999988888764 69999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||++||+||+++|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999877999999999986 67789999999996 7999999
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
+++
T Consensus 255 ~~~ 257 (340)
T PRK13536 255 RPH 257 (340)
T ss_pred CHH
Confidence 873
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=366.66 Aligned_cols=215 Identities=24% Similarity=0.333 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEE--EEEEEcCc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 754 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 754 (1275)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 588999998873 23599999999999999999999999999999999998763 46 99999998
Q ss_pred cCCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 755 PKKQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 755 ~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
+... ...++.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 123567999999999999999999999986543 2344556678999999999999888876 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999998876 799999999986 67889999999986 79999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|++.
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=330.34 Aligned_cols=194 Identities=25% Similarity=0.379 Sum_probs=169.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++++|||||||||+|++|.++++|+ +|+|.+||+++.+.. .|+.+|||-|+-.+||++||.|||.+-..+.+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 47899999999999999999999998 999999999987653 478999999999999999999999986665432
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
. +++.+.+++++++.+||+... ..+++++.|||||+|||.+||
T Consensus 106 ~----------------------------------k~~i~~r~~ELl~lvgL~p~~---~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 106 D----------------------------------KERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred C----------------------------------HHHHHHHHHHHHHHhCCCHHH---HhhcCchhcCcchhhHHHHHH
Confidence 1 112234578899999997532 346889999999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
||+.+|+|+|+|||+++|||-++.++.+.++++-+.. ++||+.++|+.+|+++++|||++|++|+++..++|+++..
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999876655 5566668999999999999999999999999999999875
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=342.34 Aligned_cols=215 Identities=23% Similarity=0.335 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-+.+++++|+++ +++.+|+|+|+++++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYP------------GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcC------------CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 367899999874 125799999999999999999999999999999999998763 479999999885
Q ss_pred C----cccccceEEEeccCCCC-CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 757 K----QETFTRISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 757 ~----~~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
. ....++.+|||+|++.. +-.-||.|.+.|+..- ...+.++.+++++++++.+|+.+.+++.. ..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 5 34567889999999754 3457999999998642 24556678899999999999999988775 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
|||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |+|+|++|||.+ .+...+|++++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 689999999986 57788999999996 7999
Q ss_pred EECCC
Q 000808 911 YVGPL 915 (1275)
Q Consensus 911 ~~g~~ 915 (1275)
++|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99986
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=340.27 Aligned_cols=191 Identities=25% Similarity=0.322 Sum_probs=168.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+.+|+|+||||||||+++|.++..|+ +|+|.++|.++.... .|+.+|+++|+..++.+.||.||+.|..++
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 47899999999999999999999998 999999998876543 357899999999999999999999998877
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. +.+.+.++.++|+.+||++..+ .++.+|||||||||+
T Consensus 111 ag~~----------------------------------k~ei~~RV~elLelVgL~dk~~-----~yP~qLSGGQKQRVa 151 (339)
T COG1135 111 AGVP----------------------------------KAEIKQRVAELLELVGLSDKAD-----RYPAQLSGGQKQRVA 151 (339)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCChhhhc-----cCchhcCcchhhHHH
Confidence 5421 1233446788999999997765 567789999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|+|||+|||||+|||.+...|++.|+++.++. +.||+.++|-++-+.+.||||.+|++|++++.|+..++.
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999999988765 677777999999999999999999999999999988874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=363.19 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67889988763 24599999999999999999999999999999999998663 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 QE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
.. ..++.++|++|++.++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987653211 12344556678899999999998887775 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++..++|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 67889999999996 79999998
Q ss_pred CC
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
+.
T Consensus 221 ~~ 222 (353)
T PRK10851 221 PD 222 (353)
T ss_pred HH
Confidence 74
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=342.06 Aligned_cols=210 Identities=28% Similarity=0.407 Sum_probs=176.7
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 5678887763 2469999999999999999999999999999999999865 348999999987643
Q ss_pred -ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 759 -ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 759 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
...++.++|++|++.+++.+|++||+.+..... ....+..+++++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 123457899999998889999999998765332 1223344566889999999988777765 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+.+|++++|.+ |+++..|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999985 56788999999986 6877654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=363.54 Aligned_cols=216 Identities=22% Similarity=0.324 Sum_probs=188.4
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 13 ~~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~ 77 (375)
T PRK09452 13 PLVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQD 77 (375)
T ss_pred ceEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3588999998873 2459999999999999999999999999999999999876 348999999987
Q ss_pred CCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 756 KKQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 756 ~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
... ...++.+||++|++.++|.+||.||+.|+...+ ..+..+.+++++++++.++|.+..++.+ .+|||||
T Consensus 78 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq 149 (375)
T PRK09452 78 ITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQ 149 (375)
T ss_pred CCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 643 223567999999999999999999999986533 2344555667899999999998888775 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|
T Consensus 150 ~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g 227 (375)
T PRK09452 150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDG 227 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998765 899999999985 67889999999996 8999999
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
++.
T Consensus 228 ~~~ 230 (375)
T PRK09452 228 TPR 230 (375)
T ss_pred CHH
Confidence 873
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=342.78 Aligned_cols=208 Identities=23% Similarity=0.324 Sum_probs=175.1
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 568899887731 12359999999999999999999999999999999999865 34899999998753
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. .+++.++|++|++.+++.+||.||+.+....+ ....++.+++++++++.+|+.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 13567899999999999999999998875432 1223344567889999999988777665 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.+ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777899999999985 56678999999986 54
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=361.58 Aligned_cols=216 Identities=24% Similarity=0.358 Sum_probs=188.1
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 18 ~~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~ 82 (377)
T PRK11607 18 PLLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVD 82 (377)
T ss_pred ceEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3589999998763 2459999999999999999999999999999999999876 348999999987
Q ss_pred CCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 756 KKQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 756 ~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
... ...++.+||++|++.++|++||.||+.|+...+ ..+..+.+++++++++.++|.+..+..+ .+|||||
T Consensus 83 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq 154 (377)
T PRK11607 83 LSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQ 154 (377)
T ss_pred CCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHH
Confidence 643 234577999999999999999999999876543 2344556678899999999998887765 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|
T Consensus 155 ~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g 232 (377)
T PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIG 232 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEc
Confidence 99999999999999999999999999999999999999988654 899999999986 67899999999986 7999999
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
++.
T Consensus 233 ~~~ 235 (377)
T PRK11607 233 EPE 235 (377)
T ss_pred CHH
Confidence 874
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=340.50 Aligned_cols=215 Identities=25% Similarity=0.367 Sum_probs=179.6
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 567888776310 011469999999999999999999999999999999999865 348999999987642
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000808 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838 (1275)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv 838 (1275)
.++.++|++|++.+++.+|++||+.+....+ ....+..+++++++++.+++.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 3567899999999888899999998875433 1223344567889999999987777665 46999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeec-CcEEEEECCC
Q 000808 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKR-GGQEIYVGPL 915 (1275)
Q Consensus 839 ~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~ 915 (1275)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ +|+++..++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999865 4899999999985 56788999999985 4899888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=358.84 Aligned_cols=203 Identities=27% Similarity=0.384 Sum_probs=177.1
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCC
Q 000808 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFTRISGYCEQNDIHSPFVT 779 (1275)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lt 779 (1275)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3569999999999999999999999999999999999876 348999999987643 233567899999999999999
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000808 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859 (1275)
Q Consensus 780 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsg 859 (1275)
|+||+.+.+.++ .....+.+++++++++.+||.+..++.+ +.||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 2233444567889999999998888776 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 860 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 860 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|+++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 209 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTPE 209 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999877999999999986 67788999999986 7999999863
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=338.72 Aligned_cols=209 Identities=25% Similarity=0.423 Sum_probs=177.2
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 5778887763 2459999999999999999999999999999999999865 358999999987643
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000808 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838 (1275)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv 838 (1275)
..++.++|++|++.+++.+|++||+.+....+. ....+.++.++++++.+|+.+..++.+ ..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345678999999999999999999987654431 223344567889999999987776655 46999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 839 ~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
+||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998777899999999975 46678999999986 7877654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=341.28 Aligned_cols=213 Identities=28% Similarity=0.372 Sum_probs=180.4
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 35778887763 2469999999999999999999999999999999999865 34899999997653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
. ...++.++|++|++.+++.+||+|++.+....+ ....++.+++++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 223457899999999999999999998875443 1223344567889999999988777765 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
||++||+||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998776 899999999986 56778999999986 78988887
Q ss_pred C
Q 000808 915 L 915 (1275)
Q Consensus 915 ~ 915 (1275)
+
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 5
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=374.55 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=179.8
Q ss_pred CCCCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEE
Q 000808 672 PFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 751 (1275)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~ 751 (1275)
|.-...++++|++|+|+. ++..+|+|+|++|+|||.+||+|+||||||||+|+|.|... +.+|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 444578999999999963 22369999999999999999999999999999999999876 45899999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-------Ccccccc
Q 000808 752 SGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-------NPLRQSL 821 (1275)
Q Consensus 752 ~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~ 821 (1275)
||.+... ..+|+.+|||+|++.++. -|++||+.++. | +.+.++ +.++++..|. ..-.++.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~----p-~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN----P-EATDEE----IIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhcccccccc
Confidence 9998653 567899999999998875 69999998652 2 223222 3344443333 2334666
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhh
Q 000808 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELF 901 (1275)
Q Consensus 822 ~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~ 901 (1275)
+|.. ..+||||||||++|||||+++|+||+||||||+||+++.+.|.+.|+++. +|+|+|+++|+++ ....+|+|+
T Consensus 603 v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 6643 45899999999999999999999999999999999999999999999976 4799999999975 688999999
Q ss_pred eeecCcEEEEECCCCc
Q 000808 902 LMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 902 ~l~~gg~~~~~g~~~~ 917 (1275)
+|++ |+++..|+.++
T Consensus 679 Vl~~-Gkiv~~gs~~e 693 (709)
T COG2274 679 VLDQ-GKIVEQGSHEE 693 (709)
T ss_pred EccC-CceeccCCHHH
Confidence 9986 89999999743
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=355.49 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=183.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++++. ++.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478899998773 24599999999999999999999999999999999998653 489999999875
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 757 KQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
.. ...++.+||++|++.+++.+||+||+.+.+... ..+..+.+++++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 223567999999999999999999998755432 1233344456788999999988877776 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999877999999999986 57788999999986 79999998
Q ss_pred CC
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
++
T Consensus 219 ~~ 220 (303)
T TIGR01288 219 PH 220 (303)
T ss_pred HH
Confidence 63
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=320.86 Aligned_cols=212 Identities=25% Similarity=0.406 Sum_probs=192.4
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
+++++|+.++ +++.+++|+||.++||+++|++|||||||||++++|.|... +.+|.|.++|.+.+
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 5677777554 46789999999999999999999999999999999999876 45899999999877
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
.. .+.++||.|.+.-+++.+||.|.|.|.|.++ .++.++.++.++.+|+.+++......++ +.||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 53 3456899999999999999999999999887 5667788888999999999999888877 5799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
+.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+.+ .+-++||++++|++ |+.|.+|+.
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 99999999999999999999999999999999999999999999999999986 68899999999996 789999997
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=338.42 Aligned_cols=210 Identities=26% Similarity=0.396 Sum_probs=177.5
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 5778887763 2369999999999999999999999999999999999865 348999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 759 E-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 759 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
. ..++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..+..+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 22456999999998888999999998765432 1233444567889999999988777765 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++++|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998764 899999999975 56778999999986 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=359.43 Aligned_cols=204 Identities=24% Similarity=0.294 Sum_probs=179.0
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc---cc----cceEEEeccCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----TRISGYCEQNDI 773 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 773 (1275)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .+ ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34569999999999999999999999999999999999876 3589999999886532 12 567999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000808 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1275)
Q Consensus 774 ~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illl 853 (1275)
++|.+||+||+.|..... ..+.++.++++.++++.+||.+..++.+ ..|||||||||+|||||+.+|+||+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2345566778899999999988877775 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 854 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
||||++||+.++..+.+.++++.++ |+|||++||+++ ++...+|++++|.+ |+++..|+++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999998754 899999999986 57788999999985 7999999864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=362.38 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478899988773 24599999999999999999999999999999999998763 489999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 757 KQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 757 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
.. ...++.+||++|+..+++.+||+||+.|....+ ..+..+.+++++++++.+||.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 123467999999999999999999999876543 1234455667899999999988877765 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 67789999999996 79999998
Q ss_pred CC
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
++
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 74
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=358.76 Aligned_cols=218 Identities=22% Similarity=0.302 Sum_probs=184.4
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++.. ..++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788998887410 013469999999999999999999999999999999999876 34899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. ..++.+||++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999998875443 2234445567889999999988777765 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 56778999999986 7999
Q ss_pred EECCCC
Q 000808 911 YVGPLG 916 (1275)
Q Consensus 911 ~~g~~~ 916 (1275)
+.|++.
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999863
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=334.08 Aligned_cols=193 Identities=26% Similarity=0.415 Sum_probs=164.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCc---cCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~---~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
++|++|||||||||||++|+|+..|+ +|.|.+||+ |.++.. ..|.+|||+|+..+|+.+||.|||.|+.+++.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 47999999999999999999999998 999999999 665533 34789999999999999999999999987652
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
. ++.+ .+.+..++++|+.+.|+. ++++++..|||||||||++|
T Consensus 107 ~-----~p~~---------------------------~~~r~rv~elL~lvqL~~-----la~ryP~QLSGGQrQRVALA 149 (345)
T COG1118 107 E-----RPSE---------------------------AEIRARVEELLRLVQLEG-----LADRYPAQLSGGQRQRVALA 149 (345)
T ss_pred c-----CCCh---------------------------hhHHHHHHHHHHHhcccc-----hhhcCchhcChHHHHHHHHH
Confidence 1 1111 122334677888888865 45678899999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||+..|++||||||+++||++.+.++...|++.....+ .+.+.++|+.+|++++||||++|++|+|...|+++++.
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~-~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC-ceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999765444 44555899999999999999999999999999999984
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=341.76 Aligned_cols=217 Identities=27% Similarity=0.392 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367889988773 2459999999999999999999999999999999999865 3489999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 757 KQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+.+++++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 431 2245689999999998899999999876543211 00122334456788999999987777665 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999998765 899999999985 56788999999985 7899998
Q ss_pred CC
Q 000808 914 PL 915 (1275)
Q Consensus 914 ~~ 915 (1275)
++
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 76
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=361.92 Aligned_cols=219 Identities=26% Similarity=0.357 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++++. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378899988773 3469999999999999999999999999999999999876 3489999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ...++.+||++|++.+++.+||+|++.++...... .....++.+++++++++.+|+.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 23456799999999998999999999875321100 01112334567899999999998888776 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|||||+.|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999986 57789999999986 799999
Q ss_pred CCCCc
Q 000808 913 GPLGR 917 (1275)
Q Consensus 913 g~~~~ 917 (1275)
|++++
T Consensus 221 G~~~e 225 (402)
T PRK09536 221 GPPAD 225 (402)
T ss_pred cCHHH
Confidence 98753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=342.61 Aligned_cols=215 Identities=27% Similarity=0.354 Sum_probs=179.5
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4678877763 2359999999999999999999999999999999999865 348999999987643
Q ss_pred c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000808 759 E---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1275)
Q Consensus 759 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 827 (1275)
. . .++.++|++|++.+++.+||+||+.+......... ....+.++.++++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 1 1 23458999999999999999999988754321110 113344567889999999987777665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 479999999999999999999999999999999999999999999998777899999999986 56788999999986 7
Q ss_pred EEEEECCC
Q 000808 908 QEIYVGPL 915 (1275)
Q Consensus 908 ~~~~~g~~ 915 (1275)
+++..|++
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 89998876
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=350.96 Aligned_cols=203 Identities=29% Similarity=0.413 Sum_probs=174.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++++..+ +|.+++|+|+..++|.+||+||+.|+.++++..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~- 106 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP- 106 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc-
Confidence 36899999999999999999999998 9999999999988655 488999999999999999999999998876421
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
+++.+.+++++.+.|+|++..| +.+.+|||||||||+|||||
T Consensus 107 ---------------------------------k~ei~~rV~eva~~L~l~~lL~-----r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 107 ---------------------------------KAEIDKRVKEVAKLLGLEHLLN-----RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred ---------------------------------hHHHHHHHHHHHHHcCChhHHh-----cCcccCChhhHHHHHHHHHH
Confidence 1223345777889999987665 56778999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHHHh
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f~~ 239 (1275)
+.+|+++|||||+|+||+..+.++...++++.+.. +++++.+||+..|+..++|||++|++|++...|++.++.+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~---- 223 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE---- 223 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh----
Confidence 99999999999999999999999999999865544 5666678999999999999999999999999999999843
Q ss_pred CCCCCCCCCChhhHH
Q 000808 240 MGFKCPERKGVADFL 254 (1275)
Q Consensus 240 ~G~~~p~~~~~ad~l 254 (1275)
.|.+.-.|+|+
T Consensus 224 ----~P~n~fVA~Fi 234 (338)
T COG3839 224 ----RPANLFVAGFI 234 (338)
T ss_pred ----Cccchhhhhhc
Confidence 45544455554
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=338.55 Aligned_cols=215 Identities=28% Similarity=0.428 Sum_probs=179.5
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++.. ....++|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5678888876311 011269999999999999999999999999999999999865 34899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
. ..+++.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+|+.+..+..+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999999999999999998765433 1233445567889999999988777765 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999998777899999999985 56788999999986 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=352.14 Aligned_cols=213 Identities=24% Similarity=0.366 Sum_probs=184.7
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. ++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67889988773 2469999999999999999999999999999999999866 34899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
. ...++.+||++|++.+++.+|+.||+.+.+.++. .+.++..++++++++.+||.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998775542 233444566889999999998888776 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999986 67889999999986 799999987
Q ss_pred C
Q 000808 916 G 916 (1275)
Q Consensus 916 ~ 916 (1275)
+
T Consensus 217 ~ 217 (301)
T TIGR03522 217 D 217 (301)
T ss_pred H
Confidence 4
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=340.86 Aligned_cols=213 Identities=26% Similarity=0.360 Sum_probs=179.9
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5778887763 2459999999999999999999999999999999999865 347999999987532
Q ss_pred c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 759 E---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 759 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
. . .++.++|++|++.+++.+|++||+.+....+. ....+.+++++++++.+++.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 23468999999999999999999987643321 223344556789999999987777665 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |+++..|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999998777899999999986 67889999999985 78998887
Q ss_pred CC
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
.+
T Consensus 217 ~~ 218 (232)
T cd03218 217 PE 218 (232)
T ss_pred HH
Confidence 63
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=340.41 Aligned_cols=214 Identities=23% Similarity=0.286 Sum_probs=177.4
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCC-----CCceEEEEEEEcC
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITISG 753 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~-----~~~~~~G~i~~~g 753 (1275)
+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 5778887763 236999999999999999999999999999999999976 4 4589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 828 (1275)
.+... ...++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+|+.+..+.... ..
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 22356789999998888 7999999988654331 11222245668899999999876555420 24
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 79999999999999999999999999999999999999999999999876 99999999986 56778999999986 79
Q ss_pred EEEECCCC
Q 000808 909 EIYVGPLG 916 (1275)
Q Consensus 909 ~~~~g~~~ 916 (1275)
+++.|++.
T Consensus 218 i~~~g~~~ 225 (227)
T cd03260 218 LVEFGPTE 225 (227)
T ss_pred EEEecCcc
Confidence 99998863
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=311.96 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=181.8
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++.+|++|+.. .+.+|++||++++|||++||+||||||||||||.|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 56788998873 46799999999999999999999999999999999997763 3799999999865
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCC--CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE--VDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
. ....+.-+.+||+..+-...||+|-+.++.. |.. ...++..+.+++++...++.+++.+.. ..|||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSG 138 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSG 138 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCc
Confidence 4 2334456889999888777899999998743 322 122345556889999999999887665 57999
Q ss_pred HHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 833 EQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 833 Gerqrv~ia~~l~~------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
||||||.+||.|++ ++++||||||||.||...+..++++.|+++++|..|+++.||++. ...++|+|++|++
T Consensus 139 GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~- 216 (259)
T COG4559 139 GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ- 216 (259)
T ss_pred hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-
Confidence 99999999999976 456999999999999999999999999999999999999999985 5689999999996
Q ss_pred cEEEEECCCCc
Q 000808 907 GQEIYVGPLGR 917 (1275)
Q Consensus 907 g~~~~~g~~~~ 917 (1275)
||++..|++.+
T Consensus 217 Grv~a~g~p~~ 227 (259)
T COG4559 217 GRVIASGSPQD 227 (259)
T ss_pred CeEeecCCHHH
Confidence 89999999853
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=337.41 Aligned_cols=221 Identities=37% Similarity=0.619 Sum_probs=181.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC-ceEEEEEEEcCccC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 756 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 756 (1275)
+.|+|+++.++.. +..+.+|+|+|+++++||+++|+||||||||||+++|+|..+. .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5688888877411 0135799999999999999999999999999999999997641 13589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEE-IMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
.....++.++|++|++.+++.+|++||+.+......+.........+++++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544456779999999999999999999998765432222122222334555 889999987766654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985568899999999986 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=337.90 Aligned_cols=208 Identities=28% Similarity=0.398 Sum_probs=172.5
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 577888776310 001469999999999999999999999999999999999865 348999999987542
Q ss_pred cc-------ccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 759 ET-------FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 759 ~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. .++.++|++|++.+++.+||+||+.+....+. ......+++++++++.+|+.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 11 24578999999999999999999988754431 223334567889999999988777665 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ ..+|++++|++ |+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999999999999999999999999999876 5899999999986 34 48999999986 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=327.74 Aligned_cols=177 Identities=25% Similarity=0.363 Sum_probs=154.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|-+||+||+.|+.+..+..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~-- 103 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS-- 103 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccccc--
Confidence 47999999999999999999999997 999999998873 34568999999999999999999999988765311
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
..+....++++|+.+||....+ ++++.|||||||||+|||||+
T Consensus 104 --------------------------------~~e~~~~a~~~L~~VgL~~~~~-----~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 104 --------------------------------KAEARERAKELLELVGLAGFED-----KYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred --------------------------------hHhHHHHHHHHHHHcCCcchhh-----cCccccChHHHHHHHHHHHHh
Confidence 0112235678899999987664 678899999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCC
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDA 222 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G 222 (1275)
.+|++|+||||+++||+.|+.++.+.+.++.+.. +.+++.++|+.+|+..++|||++|.++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999887754 566677999999999999999999984
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=367.26 Aligned_cols=217 Identities=26% Similarity=0.426 Sum_probs=181.8
Q ss_pred CCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcC
Q 000808 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1275)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g 753 (1275)
-...++|+||+|+|+.++ +.+||||+||+|+|||.+||+||||+||||+.+.|-...+ +.+|+|.+||
T Consensus 462 ~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG 529 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDG 529 (716)
T ss_pred ccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 346899999999997653 3579999999999999999999999999999999998765 4589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCC
Q 000808 754 YPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFI-----EEIMELVELNPLRQSLVGLP 825 (1275)
Q Consensus 754 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~~~~~ 825 (1275)
.|+++ ..+++.+|+|.|||.+|. -|++||+.|+.. +.+.++..+.+ .+-+ .++.+-.||.+|..
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEK 601 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCc
Confidence 99754 456789999999999986 599999998753 33333322211 1122 34566678999865
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
+ ..||||||||++|||||++||+||||||+||+||+++...+.+.|.+..+ ++|||++.|+++ ..+.+|+|+++++
T Consensus 602 G-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 602 G-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK 677 (716)
T ss_pred c-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC
Confidence 4 37999999999999999999999999999999999999999999988765 699999999975 6789999999996
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|.-
T Consensus 678 -G~V~E~G~h 686 (716)
T KOG0058|consen 678 -GRVVEMGTH 686 (716)
T ss_pred -CeEEecccH
Confidence 799999965
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=334.23 Aligned_cols=206 Identities=29% Similarity=0.389 Sum_probs=174.7
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5778887763 2469999999999999999999999999999999999865 358999999987542
Q ss_pred -ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 759 -ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 759 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
...++.++|++|++.+++.+|++||+.+....+. . .+++++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2335578999999999999999999987654321 1 1345788999999988777665 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998777899999999975 46678999999986 7887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=318.32 Aligned_cols=215 Identities=27% Similarity=0.389 Sum_probs=178.8
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++..| ++.++|++||+++++||+++|+||||||||||||+|+|..+. .+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 6778887665 345799999999999999999999999999999999998763 4899999999976
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000808 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE-LNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ..++-++||||....||.|||+|||..++..+.. ++..+..++++.+.+= |.+.+++..| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 3456789999999999999999999987654422 1111222566776663 5555566654 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||||-++|||||+.+|++|+|||||.||-|.-..+|.+.++++.++ |.||+.+-++.. ...+..||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999866 779999998875 46789999999986 89999
Q ss_pred ECCCCcc
Q 000808 912 VGPLGRH 918 (1275)
Q Consensus 912 ~g~~~~~ 918 (1275)
.|+.++.
T Consensus 218 ~G~~~eL 224 (237)
T COG0410 218 SGTAAEL 224 (237)
T ss_pred ecCHHHH
Confidence 9997543
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=338.96 Aligned_cols=217 Identities=24% Similarity=0.319 Sum_probs=180.9
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5678888776310 0012699999999999999999999999999999999998763 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 124678999999999999999999988654331 233344556889999999987777665 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999975 56778999999985 7999
Q ss_pred EECCC
Q 000808 911 YVGPL 915 (1275)
Q Consensus 911 ~~g~~ 915 (1275)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=336.37 Aligned_cols=214 Identities=26% Similarity=0.395 Sum_probs=179.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+.. +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 357788877631 11469999999999999999999999999999999999865 34899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
. ..+++.++|++|++.+++.+|++||+.+...... ...++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 2 2345668999999999889999999987654331 223334556889999999987777665 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|.+ |+++..|++
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999876 599999999986 46678999999986 789998876
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=333.93 Aligned_cols=206 Identities=26% Similarity=0.343 Sum_probs=173.5
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887762 12459999999999999999999999999999999999865 34899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. .+++.++|++|++.+++.+|+.||+.+....+ .......+++++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 23467899999999999999999998875432 1223344567889999999987666655 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++...+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777899999999985 567789999999863
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=341.91 Aligned_cols=217 Identities=27% Similarity=0.320 Sum_probs=177.9
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 5678877663 11469999999999999999999999999999999999865 347999999987642
Q ss_pred c------cccceEEEeccCCCCCCCCCHHHHHHHHHhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000808 759 E------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1275)
Q Consensus 759 ~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 827 (1275)
. ..++.++|++|++.+++.+||+||+.+...... .........+++++++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA----- 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----
Confidence 1 234678999999999999999999977532110 001111233456788999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999998764 899999999986 56678999999986
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|++++.|+++
T Consensus 221 G~i~~~~~~~ 230 (241)
T cd03256 221 GRIVFDGPPA 230 (241)
T ss_pred CEEEeecCHH
Confidence 7899998863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=323.01 Aligned_cols=218 Identities=26% Similarity=0.359 Sum_probs=186.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++.++++.+. +...+++|||+++++||+++|+||||||||||+|+|+|..++ ..|+|.++|.++.
T Consensus 5 L~v~~l~k~F-------------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it 69 (250)
T COG0411 5 LEVRGLSKRF-------------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDIT 69 (250)
T ss_pred eeeccceeec-------------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccC
Confidence 5566666554 456799999999999999999999999999999999998763 4899999999875
Q ss_pred ccc----ccceEEEeccCCCCCCCCCHHHHHHHHHhcc--------CCCC-CCHHHHHHHHHHHHHHcCCCccccccccC
Q 000808 758 QET----FTRISGYCEQNDIHSPFVTVYESLLYSAWLR--------LPPE-VDSETQKMFIEEIMELVELNPLRQSLVGL 824 (1275)
Q Consensus 758 ~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~--------~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 824 (1275)
... .+.-++--+|...+|+.|||.||+..++..+ .+.. ...++..+++.++|+.+||.+.+|...|
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 422 2345677899999999999999998875433 1111 1234556778999999999999999975
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhhee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
+||+|||||+.|||||+.+|++|+||||.+||.+.....+.+.|+++.++ |.||+++-||.+ -++.++|||++|
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEec
Confidence 59999999999999999999999999999999999999999999999874 799999999997 488999999999
Q ss_pred ecCcEEEEECCCCc
Q 000808 904 KRGGQEIYVGPLGR 917 (1275)
Q Consensus 904 ~~gg~~~~~g~~~~ 917 (1275)
+. |+++..|++++
T Consensus 224 ~~-G~~IAeG~P~e 236 (250)
T COG0411 224 NY-GEVIAEGTPEE 236 (250)
T ss_pred cC-CcCcccCCHHH
Confidence 96 79999999853
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=319.41 Aligned_cols=194 Identities=26% Similarity=0.370 Sum_probs=164.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+|||||||||||++|.|+++|+ +|+|+++|.++.... .++++|+++|+-++|.++||.||+.|..+-
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 47999999999999999999999998 999999999986542 346799999999999999999999996542
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
+. + . .+...++++..-|+..||... +++..+.+||||+|||++
T Consensus 113 ~~-----~----l------------------------p~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM~KRva 155 (263)
T COG1127 113 HT-----K----L------------------------PESLIRELVLMKLELVGLRGA----AADLYPSELSGGMRKRVA 155 (263)
T ss_pred hc-----c----C------------------------CHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchHHHHHH
Confidence 21 0 0 111222344555888899754 346778899999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||||++.+|+++++||||+||||.++..+.+.++++.+.. +.|+++++|+.++++..|||+++|.+|||+..|+++++.
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999987765 455556899999999999999999999999999999986
Q ss_pred H
Q 000808 235 D 235 (1275)
Q Consensus 235 ~ 235 (1275)
+
T Consensus 235 ~ 235 (263)
T COG1127 235 A 235 (263)
T ss_pred h
Confidence 4
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=338.13 Aligned_cols=214 Identities=21% Similarity=0.339 Sum_probs=180.7
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788887763 2459999999999999999999999999999999999865 35899999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 758 Q-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 758 ~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
. ...++.++|++|++.+++.+||+||+.+...... .....+.++++.++++.+|+.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 1235678999999999999999999987542111 1233445567889999999987766665 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999998777899999999986 56678999999986 799999
Q ss_pred CCC
Q 000808 913 GPL 915 (1275)
Q Consensus 913 g~~ 915 (1275)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 886
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=344.85 Aligned_cols=203 Identities=24% Similarity=0.301 Sum_probs=173.2
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeccCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FTRISGYCEQNDI 773 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 773 (1275)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 456799999999999999999999999999999999998753 479999999875421 1 1356899999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000808 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1275)
Q Consensus 774 ~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illl 853 (1275)
+++.+|++||+.+..... .......+++++++++.+||.+..++.+ +.||||||||++|||||+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998865432 1223344566889999999988777765 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 854 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999975 56788999999985 789998876
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=333.91 Aligned_cols=217 Identities=24% Similarity=0.318 Sum_probs=179.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+... ...+++|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47899999887410 011469999999999999999999999999999999999865 3589999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000808 757 KQET------F-TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1275)
Q Consensus 757 ~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 829 (1275)
.... . ++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4311 1 256899999998999999999998865432 1223344567889999999987766654 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ + ...+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~-~~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-L-AKRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-HHhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999975 3 445689999985 78
Q ss_pred EEEECCC
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9988875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=345.71 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=180.9
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67899998874110 012469999999999999999999999999999999999876 34899999998864
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 000808 758 Q-----ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN--PLRQSLVGLPGESG 829 (1275)
Q Consensus 758 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 829 (1275)
. ...++.+||++|++. .+...||+||+.|..... ..+.++..++++++++.+||. +..++.+ +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 3 134567999999863 333579999998865432 234555566789999999996 5556554 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 56678999999986 79
Q ss_pred EEEECCCC
Q 000808 909 EIYVGPLG 916 (1275)
Q Consensus 909 ~~~~g~~~ 916 (1275)
+++.|++.
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99999863
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=338.25 Aligned_cols=212 Identities=26% Similarity=0.362 Sum_probs=178.9
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56788887763 2459999999999999999999999999999999999865 34799999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
. ..+.++|++|++.+++.+||.||+.+....+ .....+.+++++++++.+|+.+..++.+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999999889999999998764432 1233344567889999999987766654 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeec-CcEEEEECCC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKR-GGQEIYVGPL 915 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~ 915 (1275)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ .+...+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 56788999999985 5899888765
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=332.80 Aligned_cols=192 Identities=29% Similarity=0.391 Sum_probs=162.6
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCC-CCCCCCHH
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDI-HSPFVTVY 781 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~ 781 (1275)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.++|++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999865 358999999987643334567999999974 33467999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000808 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861 (1275)
Q Consensus 782 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD 861 (1275)
||+.+..... . . ..++++++++.+|+.+..++.+ +.||||||||++|||||+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 1245788999999988777765 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 862 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 862 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999998777999999999986 46678999999986 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=350.19 Aligned_cols=206 Identities=28% Similarity=0.411 Sum_probs=176.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++++|||||||||||++|+|...|+ +|+|.++|+++....+ +|.+|+|+|+..+||++||.||+.|+.+++...
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~- 108 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL- 108 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC-
Confidence 47899999999999999999999998 9999999999987654 588999999999999999999999998743210
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
..++.+.+++++|+.++|++.. ++++..|||||||||+|||||
T Consensus 109 --------------------------------~~~~i~~rv~e~L~lV~L~~~~-----~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 109 --------------------------------KKAEIKARVEEALELVGLEGFA-----DRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred --------------------------------CHHHHHHHHHHHHHHcCchhhh-----hhChhhhChHHHHHHHHHHHh
Confidence 0112334678899999998754 567889999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHHHh
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f~~ 239 (1275)
+.+|++||||||.|+||.+-+.++...++++.+.. +.+.+.++|+.+|++.++|||++|++|+|...|+++++-
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY----- 225 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY----- 225 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHh-----
Confidence 99999999999999999999999999999987765 566666899999999999999999999999999999983
Q ss_pred CCCCCCCCCChhhHHHh
Q 000808 240 MGFKCPERKGVADFLQE 256 (1275)
Q Consensus 240 ~G~~~p~~~~~ad~l~~ 256 (1275)
..|...-.|+|+-+
T Consensus 226 ---~~P~~~fVA~FiG~ 239 (352)
T COG3842 226 ---ERPATRFVADFIGE 239 (352)
T ss_pred ---hCcchHHHHHHhCc
Confidence 45665556676643
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=338.87 Aligned_cols=213 Identities=27% Similarity=0.385 Sum_probs=179.0
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYG------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeC------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 5678887763 11459999999999999999999999999999999999865 347999999987542
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCHH
Q 000808 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSgG 833 (1275)
...++.++|++|++.+++.+|++||+.+...++ ..+.++..+.++++++.+++.+ ..++.+ +.||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 233567899999999999999999998765433 1233444567889999999985 555554 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999998764 899999999985 56788999999986 789998
Q ss_pred CCC
Q 000808 913 GPL 915 (1275)
Q Consensus 913 g~~ 915 (1275)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=332.82 Aligned_cols=206 Identities=26% Similarity=0.366 Sum_probs=173.3
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 5678887763 12469999999999999999999999999999999999865 348999999987542
Q ss_pred c------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 759 E------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 759 ~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
. ..++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+|+.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 235679999999999999999999988754331 233444567889999999987776665 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+.+.+|++++|++ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999998777899999999975 46668999999986 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=341.09 Aligned_cols=218 Identities=25% Similarity=0.285 Sum_probs=178.1
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 46788877652 12459999999999999999999999999999999999865 34899999998754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000808 758 Q------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1275)
Q Consensus 758 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 826 (1275)
. ..+++.++|++|++.+++.+||+||+.+...... .......+.+++++++++.+|+.+..+..+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 1235679999999999999999999976421100 001112234566888999999987766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+.+.+|++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 479999999999999999999999999999999999999999999998754 899999999986 46678999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+++
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 7899888764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=301.53 Aligned_cols=201 Identities=26% Similarity=0.391 Sum_probs=178.0
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHH
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYE 782 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 782 (1275)
..+|+|+|++|.+||.++++||||||||||||+++|..+ +..|+|.+||.+++...- .-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 359999999999999999999999999999999999877 458999999998764322 2389999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000808 783 SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862 (1275)
Q Consensus 783 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~ 862 (1275)
|+.|+..++ ..++.++.+++.+.+..+||.+..++.+ -+||||||||+.|||||+.+|+.|+||||.++||.
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 4678888899999999999999887776 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecC-cEEEEECCCC
Q 000808 863 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRG-GQEIYVGPLG 916 (1275)
Q Consensus 863 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~g-g~~~~~g~~~ 916 (1275)
-+++.++++|-++.+ .|+.++++||+.+ +..-+.+++++|+.| |+++.-=+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999988765 5999999999987 455678999999853 6787776663
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=339.24 Aligned_cols=214 Identities=26% Similarity=0.357 Sum_probs=180.1
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 77889988763 2359999999999999999999999999999999999865 34799999998753
Q ss_pred c-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000808 758 Q-----------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1275)
Q Consensus 758 ~-----------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 826 (1275)
. ...++.++|++|++.+++.+|++||+.+...... ....++..++++++++.+|+.+..+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1234578999999999989999999987543111 1233444566889999999987766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999998877999999999975 56678999999986
Q ss_pred cEEEEECCC
Q 000808 907 GQEIYVGPL 915 (1275)
Q Consensus 907 g~~~~~g~~ 915 (1275)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 789998875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=342.57 Aligned_cols=215 Identities=25% Similarity=0.343 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 478999998773 12359999999999999999999999999999999999865 3489999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ...++.+||++|++. .++..||.||+.|..... ..+..+.+++++++++.+||.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223457999999963 445689999998764321 2334444567889999999988777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 46678999999986 789999
Q ss_pred CCC
Q 000808 913 GPL 915 (1275)
Q Consensus 913 g~~ 915 (1275)
|++
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 986
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=334.44 Aligned_cols=210 Identities=28% Similarity=0.414 Sum_probs=174.7
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCC
Confidence 5778877653 2369999999999999999999999999999999999865 347999999987543
Q ss_pred c----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHH
Q 000808 759 E----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 759 ~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSgG 833 (1275)
. ..++.++|++|++.+++.+|++||+.+...... ..+.++.++++++.+ ++.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHH
Confidence 1 124568999999999999999999988654321 122344567778887 4666556554 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|.+ |+++..|
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 214 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEG 214 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeC
Confidence 999999999999999999999999999999999999999998777899999999975 56788999999986 7899888
Q ss_pred CC
Q 000808 914 PL 915 (1275)
Q Consensus 914 ~~ 915 (1275)
+.
T Consensus 215 ~~ 216 (222)
T cd03224 215 TA 216 (222)
T ss_pred CH
Confidence 75
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=345.22 Aligned_cols=219 Identities=24% Similarity=0.298 Sum_probs=180.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++... .....+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 77899998874110 0123599999999999999999999999999999999998663 4799999876531
Q ss_pred ---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 000808 758 ---------------------------QETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809 (1275)
Q Consensus 758 ---------------------------~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l 809 (1275)
....++.+||++|++ ..+...||+|++.|..... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 112356799999985 2334579999998865432 234555667789999
Q ss_pred HHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 000808 810 ELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888 (1275)
Q Consensus 810 ~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 888 (1275)
+.+||. +..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666654 4799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 889 PSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 889 ~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
++ .+.+.+|++++|++ |++++.|++.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 75 57788999999986 7999999874
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=340.56 Aligned_cols=216 Identities=20% Similarity=0.295 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 488999998763 2459999999999999999999999999999999999865 3489999999875
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000808 757 KQE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1275)
Q Consensus 757 ~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 830 (1275)
... ..++.++|++|++.+++.+|+.||+.+...... ..+.+..++++.++++.+|+.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 124568999999999999999999987643211 1223334456788999999988777765 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 831 SgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999975 56788999999985 799
Q ss_pred EEECCCC
Q 000808 910 IYVGPLG 916 (1275)
Q Consensus 910 ~~~g~~~ 916 (1275)
++.|+++
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9999763
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=343.58 Aligned_cols=218 Identities=25% Similarity=0.350 Sum_probs=180.5
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899998884110 012359999999999999999999999999999999999876 34899999998863
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000808 758 Q-------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1275)
Q Consensus 758 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 827 (1275)
. ...++.+||++|++ .+++ .||.|++.|..... ..+.++.++++.++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP----- 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----
Confidence 1 12456799999986 4454 69999999875422 234455667789999999996 4555554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999998777999999999985 56688999999986 7
Q ss_pred EEEEECCCC
Q 000808 908 QEIYVGPLG 916 (1275)
Q Consensus 908 ~~~~~g~~~ 916 (1275)
++++.|+++
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999874
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=330.23 Aligned_cols=208 Identities=33% Similarity=0.489 Sum_probs=174.6
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.+. ++.+|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 5778887763 235999999999999 999999999999999999999865 348999999987542
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
...++.++|++|++.+++.+||.||+.+....+ ....++.++.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 123567899999999999999999998765443 1223334556889999999987777665 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999876 599999999985 46678999999986 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=330.89 Aligned_cols=208 Identities=24% Similarity=0.315 Sum_probs=174.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788887762 12369999999999999999999999999999999999865 34899999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. .+++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567899999998888899999998865432 1233444556788999999987766654 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++...+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999998777899999999986 46678899999986 664
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=346.19 Aligned_cols=220 Identities=23% Similarity=0.322 Sum_probs=180.9
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 20 ~~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~ 89 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIY 89 (320)
T ss_pred ceEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEE
Confidence 3589999999885210 012459999999999999999999999999999999999876 348999999976
Q ss_pred CCc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC
Q 000808 756 KKQ-------------------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814 (1275)
Q Consensus 756 ~~~-------------------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l 814 (1275)
... ...++.+|||+|++ .+++ .|++||+.|+.... ..+.++..++++++++.+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL 165 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGL 165 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCC
Confidence 532 13456799999986 4555 59999998864321 22344455678899999999
Q ss_pred C-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHH
Q 000808 815 N-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 893 (1275)
Q Consensus 815 ~-~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~ 893 (1275)
. +..+..+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ .+
T Consensus 166 ~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~ 239 (320)
T PRK13631 166 DDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HV 239 (320)
T ss_pred ChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HH
Confidence 6 4555543 579999999999999999999999999999999999999999999998777999999999975 46
Q ss_pred HHhhhhhheeecCcEEEEECCCC
Q 000808 894 FESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 894 ~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
.+.+|++++|++ |+++..|++.
T Consensus 240 ~~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 240 LEVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HHhCCEEEEEEC-CEEEEeCCHH
Confidence 688999999996 7999999863
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=335.86 Aligned_cols=206 Identities=22% Similarity=0.277 Sum_probs=176.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 589999998873 2469999999999999999999999999999999999865 3479999998765
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
. ..++.++|++|++.+++.+||+||+.+... . ..+++++++++.+|+.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 235678999999999898999999987421 0 12345788999999987766664 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ .+.+.+|++++|.+ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999976 46678999999986 788888765
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=343.09 Aligned_cols=218 Identities=26% Similarity=0.305 Sum_probs=180.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++... ...+++|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 78899998884210 012469999999999999999999999999999999999866 34799999998763
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000808 758 Q-------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1275)
Q Consensus 758 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 827 (1275)
. ...++.+||++|++ .++ ..||+||+.|..... ..+.++.+++++++++.+||. +..++.+
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP----- 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----
Confidence 1 13456799999986 344 479999998875322 233444556789999999996 5566654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|.+
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~- 221 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK- 221 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999998764 899999999986 57788999999985
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|++++.|++.
T Consensus 222 G~i~~~g~~~ 231 (290)
T PRK13634 222 GTVFLQGTPR 231 (290)
T ss_pred CEEEEECCHH
Confidence 7999999863
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=332.57 Aligned_cols=212 Identities=27% Similarity=0.390 Sum_probs=177.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 56788887763 2459999999999999999999999999999999999865 34899999998754
Q ss_pred cc--cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 QE--TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
.. ...+.++|++|++.+++.+|++||+.+....+ ....++..+.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22346899999998888999999998765432 1233344556888999999987776665 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++. + ..+|++++|++ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 58999999999863 4 45999999986 78898887
Q ss_pred C
Q 000808 915 L 915 (1275)
Q Consensus 915 ~ 915 (1275)
+
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=335.22 Aligned_cols=214 Identities=24% Similarity=0.318 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcCc
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 754 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 754 (1275)
++++|+++++. ++.+++|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56888888763 235999999999999999999999999999999999976521 12799999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 000808 755 PKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSLVGLP 825 (1275)
Q Consensus 755 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 825 (1275)
+... ...++.++|++|++.+++ +|++||+.+....+. .....+.++.++++++.+|+. +..+..+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 142 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA--- 142 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc---
Confidence 7642 123567999999998888 999999988654331 122344456788999999997 4455543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 143 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 143 --LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999876 489999999985 56788999999996
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|++++.|++
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 789999876
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=330.70 Aligned_cols=206 Identities=24% Similarity=0.348 Sum_probs=173.2
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 5778887763 2459999999999999999999999999999999999865 348999999987632
Q ss_pred -----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 759 -----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 759 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
...++.++|++|++.+++.+|+.||+.+...... ..+.++.+++++++++.+|+.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 1245679999999999999999999987642111 1233444567889999999987767665 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999998877899999999985 56678999999986 54
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=335.81 Aligned_cols=215 Identities=27% Similarity=0.368 Sum_probs=180.9
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67888887763 2469999999999999999999999999999999999865 34799999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
.. ..++.++|++|++.+++.+|+.||+.+....+. ..+.++.+++++++++.+|+.+..+..+ +.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 31 134568999999999998999999987643321 1223344567889999999987666654 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998777999999999975 57788999999985 7899988
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
+++
T Consensus 220 ~~~ 222 (241)
T PRK10895 220 TPT 222 (241)
T ss_pred CHH
Confidence 763
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=341.29 Aligned_cols=216 Identities=26% Similarity=0.390 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 588999998873 12459999999999999999999999999999999999866 3589999999876
Q ss_pred Cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000808 757 KQ-----ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1275)
Q Consensus 757 ~~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 830 (1275)
.. ..+++.+||++|++. .+...|++||+.+..... ..+.++.+++++++++.+||.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 234567999999974 234579999998764322 2234445567899999999988777765 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 831 SgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999976 46678999999986 799
Q ss_pred EEECCCC
Q 000808 910 IYVGPLG 916 (1275)
Q Consensus 910 ~~~g~~~ 916 (1275)
++.|+.+
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999874
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=342.06 Aligned_cols=219 Identities=21% Similarity=0.329 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|..+ +..|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899998884110 012469999999999999999999999999999999999876 3479999999876
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000808 757 KQ-------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPG 826 (1275)
Q Consensus 757 ~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 826 (1275)
.. ...++.+||++|++ .+++ .||.||+.|..... ..+.++.+++++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP---- 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 32 13456799999986 3554 59999998864322 234445566788999999996 5666554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +|+|||++||+++ ++.+.+|++++|++
T Consensus 144 -~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 144 -FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999875 4899999999975 46788999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|++++.|++.
T Consensus 222 -G~i~~~g~~~ 231 (286)
T PRK13646 222 -GSIVSQTSPK 231 (286)
T ss_pred -CEEEEECCHH
Confidence 7999999863
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=344.36 Aligned_cols=195 Identities=32% Similarity=0.448 Sum_probs=168.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC--ccccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE--FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~--~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++++||||||||||+++|+|.+.|+ +|+|.++|.+... ...++.+||++|++.+++.+||+||+.|.+.+++..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 57999999999999999999999997 9999999988754 344678999999999999999999999999876532
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. ...+..++++++.+||++.. ++.+++||+||||||+||+|
T Consensus 110 ~----------------------------------~~~~~~~~~~l~~~~L~~~~-----~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 110 K----------------------------------EEAEERIEELLELFGLEDKA-----NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred h----------------------------------hHHHHHHHHHHHHcCCchhh-----CcchhhcCHHHHHHHHHHHH
Confidence 1 01123467899999998743 34566899999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFE 238 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f~ 238 (1275)
|+++|+++||||||+|||+.++.++++.|+++++. ++++|++++|..+++..+||+|++|++|++++.|+.+++...+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 99999999999999999999999999999998764 34677778999999999999999999999999999998876543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=335.95 Aligned_cols=214 Identities=20% Similarity=0.266 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 488999998873 2469999999999999999999999999999999999865 3479999999865
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHHcCCCccc-
Q 000808 757 KQ----------------ETFTRISGYCEQNDIHSPFVTVYESLLYSAW-LRLPPEVDSETQKMFIEEIMELVELNPLR- 818 (1275)
Q Consensus 757 ~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~l~l~~~~- 818 (1275)
.. ..+++.++|++|++.+++.+|++||+.+... .. .....+.++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1235678999999999999999999987542 21 123344556788999999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhh
Q 000808 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898 (1275)
Q Consensus 819 ~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 898 (1275)
+..+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|
T Consensus 147 ~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 4443 579999999999999999999999999999999999999999999998777999999999985 4667899
Q ss_pred hhheeecCcEEEEECCC
Q 000808 899 ELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 899 ~~~~l~~gg~~~~~g~~ 915 (1275)
++++|++ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999986 789998876
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=332.07 Aligned_cols=217 Identities=24% Similarity=0.281 Sum_probs=172.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++... ....++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888876310 001259999999999999999999999999999999999865 34799999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000808 758 Q------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1275)
Q Consensus 758 ~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 828 (1275)
. ..+++.++|++|++ .+++.+|++||+.+......+ ....+..+..++++++.+++. +..+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 13456799999998 466789999999876543321 111111122235788999985 4555554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+...+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 69999999999999999999999999999999999999999999998765 899999999985 46668999999986 7
Q ss_pred EEEEEC
Q 000808 908 QEIYVG 913 (1275)
Q Consensus 908 ~~~~~g 913 (1275)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 877654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=344.44 Aligned_cols=230 Identities=20% Similarity=0.240 Sum_probs=184.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++............+...+++|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 588999998875311000000001235699999999999999999999999999999999998763 489999999876
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000808 757 KQE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1275)
Q Consensus 757 ~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 827 (1275)
... .+++.++||+|++ .++|.+|+.|++.+......+ ..++++.++++.++++.++|. +..++..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p----- 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYP----- 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCc-----
Confidence 431 2356799999997 578899999999876543211 234555667788999999994 3445544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
.+|||||||||+|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|++|||++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999985 46678999999985
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 7999999864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=340.91 Aligned_cols=217 Identities=24% Similarity=0.309 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.++.. +.+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 47899999887411 12359999999999999999999999999999999999866 3489999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ...++.++|++|++. .++..||+||+.|..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567899999973 667789999998865322 2344555667899999999988777765 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|.+ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999976 34 57999999985 79999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99863
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=350.55 Aligned_cols=203 Identities=23% Similarity=0.293 Sum_probs=175.0
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeccCCCC
Q 000808 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FTRISGYCEQNDIH 774 (1275)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~ 774 (1275)
...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3468999999999999999999999999999999999876 3479999999876431 1 23568999999999
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000808 775 SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854 (1275)
Q Consensus 775 ~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlD 854 (1275)
++.+||+||+.+....+ ....++.+++++++++.+||.+..++.+ +.||||||||++|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999876543 2233445567889999999988777765 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 855 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 855 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++...+|++++|++ |+++..|+++
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 99999999999999999999875 4899999999986 57788999999986 7999998763
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=328.47 Aligned_cols=211 Identities=25% Similarity=0.329 Sum_probs=172.5
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++... .+.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5678888876311 012469999999999999999999999999999999999865 34899999998754
Q ss_pred cc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000808 758 QE---T---FT-RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1275)
Q Consensus 758 ~~---~---~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 830 (1275)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+++.++++.+|+.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 12 568999999988889999999988654321 222333456788999999987776665 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 831 SgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998764 899999999986 34 55799999986 665
Q ss_pred E
Q 000808 910 I 910 (1275)
Q Consensus 910 ~ 910 (1275)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=330.46 Aligned_cols=199 Identities=27% Similarity=0.413 Sum_probs=163.8
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCC--CCCCH
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHS--PFVTV 780 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv 780 (1275)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+. ..+|+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 459999999999999999999999999999999999865 34799999997653 2456789999998764 33799
Q ss_pred HHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000808 781 YESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859 (1275)
Q Consensus 781 ~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsg 859 (1275)
+||+.+....... .....+..+++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112234456889999999987766665 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 860 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 860 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999998777899999999986 56678999999975 4 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=329.11 Aligned_cols=193 Identities=26% Similarity=0.376 Sum_probs=162.5
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc---ccccceEEEeccCCC-CCCCC
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDI-HSPFV 778 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 778 (1275)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999865 347999999987542 234567899999975 35678
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000808 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858 (1275)
Q Consensus 779 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPts 858 (1275)
|++||+.+..... .......++.++++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765332 1223334456788999999987766665 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 859 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 859 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999998877899999999975 566779999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=339.89 Aligned_cols=220 Identities=24% Similarity=0.302 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367889988774110 012469999999999999999999999999999999999876 3589999999875
Q ss_pred Cc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000808 757 KQ-------ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1275)
Q Consensus 757 ~~-------~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 827 (1275)
.. ...++.++|++|++. .+..+||.||+.+..... ....++.+++++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 123457899999963 233579999998765332 223445556789999999997 5666665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 479999999999999999999999999999999999999999999998777999999999975 56788999999986 7
Q ss_pred EEEEECCCC
Q 000808 908 QEIYVGPLG 916 (1275)
Q Consensus 908 ~~~~~g~~~ 916 (1275)
+++..|++.
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999863
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=365.48 Aligned_cols=218 Identities=30% Similarity=0.438 Sum_probs=180.5
Q ss_pred CCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcC
Q 000808 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1275)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g 753 (1275)
....++|+||+|+|+.++ +.+||+|+|+.|++|+.+||+|||||||||++++|.+..+ +.+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcC
Confidence 356899999999997543 3469999999999999999999999999999999999776 4589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH-------cCCCcccccccc
Q 000808 754 YPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL-------VELNPLRQSLVG 823 (1275)
Q Consensus 754 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~~ 823 (1275)
.+++. +.++.++|.|.|+|.+|. .|++||+.|+- ++.+.++ ++++.+. ..|.+-.|+.+|
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhccccc
Confidence 98754 346778999999997765 79999998752 2222222 3333333 234455678888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 824 ~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
..+. +||||||||++|||||++||+||+||||||+||+++.+.+++.|.+.. .|+|.|+++|+++ ..+.+|++++|
T Consensus 485 e~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS--tIrnaD~I~v~ 560 (1228)
T KOG0055|consen 485 ERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS--TIRNADKIAVM 560 (1228)
T ss_pred CCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh--hhhccCEEEEE
Confidence 6554 599999999999999999999999999999999999999999998865 5899999999986 45669999999
Q ss_pred ecCcEEEEECCCCcc
Q 000808 904 KRGGQEIYVGPLGRH 918 (1275)
Q Consensus 904 ~~gg~~~~~g~~~~~ 918 (1275)
++ |+++..|..++.
T Consensus 561 ~~-G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 561 EE-GKIVEQGTHDEL 574 (1228)
T ss_pred EC-CEEEEecCHHHH
Confidence 96 799999998543
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=338.20 Aligned_cols=214 Identities=22% Similarity=0.316 Sum_probs=179.6
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788888763 12359999999999999999999999999999999999865 35899999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 758 Q----ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 758 ~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
. ...++.++|++|++. .+...|+.||+.+..... ..+..+.+++++++++.+|+.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 223567999999975 356689999998765322 2334455567889999999988777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999998777999999999986 34 67999999986 789999
Q ss_pred CCCC
Q 000808 913 GPLG 916 (1275)
Q Consensus 913 g~~~ 916 (1275)
|+.+
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 9863
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=332.61 Aligned_cols=213 Identities=23% Similarity=0.328 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67889988773 2359999999999999999999999999999999999865 35899999998652
Q ss_pred c---------ccccceEEEeccCCCCCCCCCHHHHHHHH-HhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000808 758 Q---------ETFTRISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1275)
Q Consensus 758 ~---------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~-~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 827 (1275)
. ...++.++|++|++.+++.+|+.||+.+. .... .....+..+++.++++.+|+.+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 0 12345789999999999999999999643 2221 1223334556889999999987777665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 479999999999999999999999999999999999999999999998777999999999986 56678999999986 7
Q ss_pred EEEEECCC
Q 000808 908 QEIYVGPL 915 (1275)
Q Consensus 908 ~~~~~g~~ 915 (1275)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 99999876
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=338.40 Aligned_cols=215 Identities=25% Similarity=0.364 Sum_probs=180.7
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++ +++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67889988773 12359999999999999999999999999999999999866 35899999998764
Q ss_pred c---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 758 Q---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 758 ~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
. ...++.++|++|++. .+...||.||+.+..... ..+.+..+++++++++.+||.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 334579999998765322 2344445567889999999988777765 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999998765 899999999986 56789999999986 789999
Q ss_pred CCCC
Q 000808 913 GPLG 916 (1275)
Q Consensus 913 g~~~ 916 (1275)
|+++
T Consensus 220 g~~~ 223 (277)
T PRK13652 220 GTVE 223 (277)
T ss_pred CCHH
Confidence 9864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=297.42 Aligned_cols=191 Identities=22% Similarity=0.339 Sum_probs=161.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
++||+||||||||||||+|+|...|. +|+|++||.+.+...+ +|-+++++|+..+|..+||.+|+.++.. ++-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~L 100 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGL 100 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---ccc
Confidence 48999999999999999999999997 9999999999865543 5789999999999999999999988542 111
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
+.+ .+.++.++.++..+||..+.+ +.+.+|||||||||+|||+|
T Consensus 101 kL~-------------------------------a~~r~~v~~aa~~vGl~~~~~-----RLP~~LSGGqRQRvALARcl 144 (231)
T COG3840 101 KLN-------------------------------AEQREKVEAAAAQVGLAGFLK-----RLPGELSGGQRQRVALARCL 144 (231)
T ss_pred ccC-------------------------------HHHHHHHHHHHHHhChhhHhh-----hCccccCchHHHHHHHHHHH
Confidence 100 112234677889999987765 45668999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+-+|++||||+|+|||.-+.+....+.+++.+. +.|+++++|+.+++.+++|+++++++|+|.++|+.++..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~-~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDER-KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999988765 455555777788999999999999999999999988764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=327.10 Aligned_cols=208 Identities=24% Similarity=0.338 Sum_probs=176.9
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 5677877653 2469999999999999999999999999999999999865 358999999987643
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000808 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838 (1275)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv 838 (1275)
.. .+.++|++|++.+++.+|++||+.+....+. .. ++++.++++.+|+.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2468999999998888999999987654331 11 234678999999988777665 46999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 839 ~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|++.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999998777899999999986 56688999999986 7999999874
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=346.95 Aligned_cols=204 Identities=20% Similarity=0.297 Sum_probs=176.1
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc----cCCc---c---cc-cceEEEec
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKKQ---E---TF-TRISGYCE 769 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~----~~~~---~---~~-~~~~~~v~ 769 (1275)
+...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|. +... . .. ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999876 34899999996 2211 1 11 25699999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000808 770 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS 849 (1275)
Q Consensus 770 q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~ 849 (1275)
|++.+++.+||+||+.++...+ ..+.++.+++++++++.+||.+..+..+ ..||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 2344556677899999999998877775 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 850 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 850 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999998765 899999999986 57789999999986 7999999874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=331.93 Aligned_cols=213 Identities=22% Similarity=0.337 Sum_probs=177.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478899988763 2469999999999999999999999999999999999865 3479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCC
Q 000808 757 KQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lS 831 (1275)
... ..++.++|++|++.+++.+||.||+.+..... ..++.++.++++++.+ ++.+..+..+ ..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 431 13456999999999999999999998754221 1122334567777777 4665555543 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998777999999999975 57889999999986 79999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|+++
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99863
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=334.06 Aligned_cols=215 Identities=24% Similarity=0.293 Sum_probs=177.3
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~ 752 (1275)
..++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++
T Consensus 11 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 3588999988763 235999999999999999999999999999999999976421 258999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVG 823 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 823 (1275)
|.++.. ..+++.++|++|++.+++ +|++||+.+..... ..+.++.+++++++++.+++.+ ..++.+
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 152 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA- 152 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-
Confidence 987532 123567999999988887 89999998865432 1233344556788999998842 234333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 824 ~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|
T Consensus 153 ----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l 226 (258)
T PRK14268 153 ----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF 226 (258)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 57999999999999999999999999999999999999999999999864 799999999975 466789999999
Q ss_pred ecCcEEEEECCC
Q 000808 904 KRGGQEIYVGPL 915 (1275)
Q Consensus 904 ~~gg~~~~~g~~ 915 (1275)
++ |++++.|++
T Consensus 227 ~~-G~i~~~~~~ 237 (258)
T PRK14268 227 LM-GELIEFGQT 237 (258)
T ss_pred EC-CEEEEeCCH
Confidence 85 799999876
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=332.81 Aligned_cols=219 Identities=22% Similarity=0.261 Sum_probs=175.9
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35788887763 24599999999999999999999999999999999997411145899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhccCCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000808 758 QE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EVDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1275)
Q Consensus 758 ~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 828 (1275)
.. . .+..++|++|++.+++.+|++|++.+........ ..+.++..++++++++.+++. +..+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 1 2234899999999999999999998764322110 112233345688999999997 35555442 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hhhhheeecCc
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES-FDELFLMKRGG 907 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~gg 907 (1275)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999998777899999999985 45556 799999985 7
Q ss_pred EEEEECCC
Q 000808 908 QEIYVGPL 915 (1275)
Q Consensus 908 ~~~~~g~~ 915 (1275)
++++.|++
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 89999876
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=333.42 Aligned_cols=214 Identities=23% Similarity=0.312 Sum_probs=179.5
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788888763 2359999999999999999999999999999999999865 34899999998753
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000808 758 Q----------------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821 (1275)
Q Consensus 758 ~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 821 (1275)
. ...++.++|++|++.+++..|+.||+.+..... ........++.++++++.+|+.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123344456688999999998776665
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhh
Q 000808 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEL 900 (1275)
Q Consensus 822 ~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 900 (1275)
. +.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...+|++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4 479999999999999999999999999999999999999999999998765 899999999986 566789999
Q ss_pred heeecCcEEEEECCC
Q 000808 901 FLMKRGGQEIYVGPL 915 (1275)
Q Consensus 901 ~~l~~gg~~~~~g~~ 915 (1275)
++|++ |+++..|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 789998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=333.50 Aligned_cols=214 Identities=25% Similarity=0.356 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67888888763 2459999999999999999999999999999999999865 35799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
. ...++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+|+.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223456899999988888899999998754321 1122233456788999999987777765 4799999
Q ss_pred HHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 835 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 835 rqrv~ia~~l~------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++. ++|+|||+++|++. ++...+|++++|.+ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 56899999999975 56678999999986 7
Q ss_pred EEEEECCCC
Q 000808 908 QEIYVGPLG 916 (1275)
Q Consensus 908 ~~~~~g~~~ 916 (1275)
+++..|+.+
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 899988763
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=306.12 Aligned_cols=194 Identities=24% Similarity=0.357 Sum_probs=154.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC--CCCceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD--SKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+||++|||||||||||+++....+ |..+.+|+|.++|+++.+. ..|+.+|+|+|.|.-|| +|++||+.|+.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 589999999999999999987644 5667899999999998543 34689999999999998 899999999999
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCcc-ccccccCCCccccccccccch
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVGDEMVRGISGGQKKR 152 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqR 152 (1275)
+++... + ++.+ +++.-|+.-+|-+ ..|.+ ++...+|||||+||
T Consensus 114 ~~g~~~--~---~lde-----------------------------iVe~sLk~AaLWdEVKDrL--~~sa~~LSGGQQQR 157 (253)
T COG1117 114 LHGIKD--K---ELDE-----------------------------IVESSLKKAALWDEVKDRL--HKSALGLSGGQQQR 157 (253)
T ss_pred hhccch--H---HHHH-----------------------------HHHHHHHHhHhHHHhHHHh--hCCccCCChhHHHH
Confidence 876422 1 1111 1111121111111 11111 23455799999999
Q ss_pred hhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhh
Q 000808 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1275)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~ 232 (1275)
++|||||+-+|+|||||||||+|||.+...|.+++.++.+ .-+|++++|++.++.+..|+...+..|++++.|+.++
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999999999998753 4566668999999999999999999999999999988
Q ss_pred HH
Q 000808 233 VL 234 (1275)
Q Consensus 233 ~~ 234 (1275)
+.
T Consensus 235 iF 236 (253)
T COG1117 235 IF 236 (253)
T ss_pred hh
Confidence 74
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.55 Aligned_cols=215 Identities=22% Similarity=0.249 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999998873 235999999999999999999999999999999999976531 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 824 (1275)
.++.. ...++.++|++|++.+++ +||+||+.+...... .......+++++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 124567999999988775 899999988654321 112333456678889998873 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999864 799999999986 5678899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|++
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 799999876
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=334.10 Aligned_cols=218 Identities=22% Similarity=0.261 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 488999998763 2469999999999999999999999999999999999865 3589999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhccCC----------C--CCCHHHHHHHHHHHHHHcCCCccccc
Q 000808 757 KQE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP----------P--EVDSETQKMFIEEIMELVELNPLRQS 820 (1275)
Q Consensus 757 ~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~----------~--~~~~~~~~~~~~~~l~~l~l~~~~~~ 820 (1275)
... . .+..++|++|++.+++.+|++||+.+....... . .....+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233479999999999999999999876431110 0 00112234567888999999877776
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhh
Q 000808 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1275)
Q Consensus 821 ~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 899 (1275)
.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 65 469999999999999999999999999999999999999999999998765 899999999975 56788999
Q ss_pred hheeecCcEEEEECCCC
Q 000808 900 LFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 900 ~~~l~~gg~~~~~g~~~ 916 (1275)
+++|++ |++++.|+++
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999986 7899998863
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.61 Aligned_cols=217 Identities=23% Similarity=0.278 Sum_probs=178.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 478899988763 235999999999999999999999999999999999976421 3589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCC
Q 000808 754 YPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGLPG 826 (1275)
Q Consensus 754 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~ 826 (1275)
.++.. ..+++.++|++|++.+++.+||.||+.+....+.. .....+.++.++++++.+|+.+ ..++.+
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---- 144 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA---- 144 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc----
Confidence 87642 23456789999999888899999999886543211 1123344566889999999854 233333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++
T Consensus 145 -~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 145 -GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999864 899999999986 56678999999985
Q ss_pred cEEEEECCC
Q 000808 907 GQEIYVGPL 915 (1275)
Q Consensus 907 g~~~~~g~~ 915 (1275)
|+++..|++
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 789998876
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.53 Aligned_cols=217 Identities=24% Similarity=0.268 Sum_probs=178.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899998873 235999999999999999999999999999999999986532 2489999999
Q ss_pred ccCC--c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKK--Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~--~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.++. . ..+++.++|++|++.+++.+|+.||+.+....+. .....++.+++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 1 1345678999999999999999999987654321 11123344456788999999853 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++...+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 699999999986 5677899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|++
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 6 799999886
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=291.03 Aligned_cols=197 Identities=25% Similarity=0.381 Sum_probs=169.5
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDI 773 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~ 773 (1275)
+...||++|++.|++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++... ....+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 456799999999999999999999999999999999998763 48999999998643 123467999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000808 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1275)
Q Consensus 774 ~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illl 853 (1275)
+.|++|..||+.....++.... .+..+...+.++.+||.+-.+.+. .+|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999998887764322 223345678999999988776664 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 854 DEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
||||-+||..+...|.++|-.+.+ .|.|.|++||||. +...|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 999999999999999999988865 4999999999975 6789999999986 6765
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=349.45 Aligned_cols=214 Identities=26% Similarity=0.442 Sum_probs=180.5
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
+.+++.+|+++.++ +++++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCc
Confidence 45677779998875 234799999999999999999999999999999999998773 5899999998
Q ss_pred cCC---cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccc------ccccCC
Q 000808 755 PKK---QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ------SLVGLP 825 (1275)
Q Consensus 755 ~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~------~~~~~~ 825 (1275)
+.. ...++++++||+|++.+++ -|++||+.++. + +.+ ++.+.++++..++.+..+ +.+|.
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige- 452 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE- 452 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc-
Confidence 764 3568899999999998886 59999998752 1 222 334677888888876554 44443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
+.++|||||+|||++||||+++++++++||||++||.++.+.|++.|.++++ ++|||++||++. ....+|+|++|++
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld~ 529 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLDN 529 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEecC
Confidence 4568999999999999999999999999999999999999999999999986 599999999974 5677899999996
Q ss_pred CcEEEEECCCCc
Q 000808 906 GGQEIYVGPLGR 917 (1275)
Q Consensus 906 gg~~~~~g~~~~ 917 (1275)
|+++..|..++
T Consensus 530 -G~l~~~g~~~~ 540 (559)
T COG4988 530 -GRLVEQGTHEE 540 (559)
T ss_pred -CceeccCCHHH
Confidence 79999998743
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=303.35 Aligned_cols=191 Identities=30% Similarity=0.335 Sum_probs=167.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC--ccccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE--FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~--~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+|+|+|||||||||+|++|++++.|+ +|+|+++|.+... ...++.+|.++.+..++..+|++|||.|.+++.++.
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 58999999999999999999999998 9999999988743 334688999998889999999999999999876542
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+.+.+.+++.+.|+|.++.|+++| ++|-||||||+||||
T Consensus 107 ~----------------------------------~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARA 147 (245)
T COG4555 107 R----------------------------------KEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147 (245)
T ss_pred h----------------------------------hHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHH
Confidence 1 1122346778899999999998877 599999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|+++|++++|||||||||..++..+.+.+++... .+.+|+..+|.++|+..+||+|+++.+|++++.|+.+.+..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999988643 35677778999999999999999999999999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.43 Aligned_cols=216 Identities=25% Similarity=0.308 Sum_probs=178.9
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 67888887763 2359999999999999999999999999999999999865 34799999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000808 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1275)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 828 (1275)
.. ..++.++|++|++.+++.+|++||+.+....... .....++.+++++++++.+|+.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1234699999999999999999999876432100 00112334557889999999988777665 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999876 789999999975 56678999999986 78
Q ss_pred EEEECCCC
Q 000808 909 EIYVGPLG 916 (1275)
Q Consensus 909 ~~~~g~~~ 916 (1275)
++..|+.+
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 89888763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=334.44 Aligned_cols=217 Identities=26% Similarity=0.345 Sum_probs=179.8
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888888763 2469999999999999999999999999999999999765 34799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
. ...++.++|++|+..+++.+|+.||+.++...... .....+..+++++++++.+|+.+..++.+ ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 22345689999999888889999999875311000 01111233456788999999987777665 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777899999999986 57789999999986 7899998
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
+.+
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 874
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=324.46 Aligned_cols=208 Identities=25% Similarity=0.334 Sum_probs=171.4
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++ ++. .|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 5778887763 112 39999999999999999999999999999999875 348999999987643
Q ss_pred -ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 759 -ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 759 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
...++.++|++|++.+++.+|++||+.+....+. .. .+..+++++++++.+++.+..++.+ ..||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1234578999999999999999999987543211 11 1233456889999999987777765 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999999999999999999999999999999998754 899999999975 56678999999986 7877654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=335.41 Aligned_cols=216 Identities=25% Similarity=0.308 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 4789999988731 124599999999999999999999999999999999998763 489999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ...++.++|++|++. .++..||.||+.+..... ....++.+++++++++.+||.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 223567899999973 666789999998765432 2234445567899999999988877765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ ..+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999986 34 46999999986 78999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|+.+
T Consensus 221 ~g~~~ 225 (279)
T PRK13635 221 EGTPE 225 (279)
T ss_pred ECCHH
Confidence 99864
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=335.70 Aligned_cols=213 Identities=24% Similarity=0.361 Sum_probs=177.4
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788888763 2459999999999999999999999999999999999865 34899999998763
Q ss_pred c-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 Q-----ETFTRISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~-----~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
. ...++.++|++|++.. +...|+.||+.+..... ....++.+++++++++.+|+.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234578999999753 34568999998764332 2233444556788999999988777665 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |+++.
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998777899999999985 46678999999986 78999
Q ss_pred ECCC
Q 000808 912 VGPL 915 (1275)
Q Consensus 912 ~g~~ 915 (1275)
.|++
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 9976
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=319.93 Aligned_cols=202 Identities=24% Similarity=0.296 Sum_probs=182.9
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCCC
Q 000808 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHSP 776 (1275)
Q Consensus 704 ~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~ 776 (1275)
.-++|+|++|+.||++.|||-||||||||+++|.+..+ +..|+|.++|.++.. ...++.++.|+|...++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999999877 458999999998642 123567899999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000808 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1275)
Q Consensus 777 ~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEP 856 (1275)
+.||.||..|+..++ ..+++++++++.++++.+||....+.++ .+||||+||||.+||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998776 5678899999999999999999999886 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCc
Q 000808 857 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 917 (1275)
+|+|||--+.++++.|.++.++ ++|||++|||++ |.+.+-|||.+|+ +|+++..|.+++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999988655 899999999997 7889999999998 589999999853
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=333.04 Aligned_cols=220 Identities=27% Similarity=0.358 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-eEEEEEEEcCcc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 755 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 755 (1275)
-++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478999988763 246999999999999999999999999999999999976532 236999999987
Q ss_pred CCc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccc
Q 000808 756 KKQ--------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-----EVDSETQKMFIEEIMELVELNPLRQSLV 822 (1275)
Q Consensus 756 ~~~--------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 822 (1275)
... ...++.++|++|++.+++.+|++||+.+......+. ....++.+++++++++.+|+.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123456899999999999999999998753211000 1112334557889999999987777765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhh
Q 000808 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELF 901 (1275)
Q Consensus 823 ~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 901 (1275)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+...+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999998754 899999999986 4678899999
Q ss_pred eeecCcEEEEECCCC
Q 000808 902 LMKRGGQEIYVGPLG 916 (1275)
Q Consensus 902 ~l~~gg~~~~~g~~~ 916 (1275)
+|.+ |++++.|+++
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9986 7899999874
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=330.25 Aligned_cols=221 Identities=24% Similarity=0.325 Sum_probs=176.9
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC---CceEEEEEEE
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITI 751 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~---~~~~~G~i~~ 751 (1275)
|..++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|... ..+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34689999998873 2359999999999999999999999999999999999642 1135799999
Q ss_pred cCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000808 752 SGYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1275)
Q Consensus 752 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 826 (1275)
+|.+... ...++.++|++|++.+++ .|++||+.+....+. ....+..+++++++++.+++.+....... ..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CC
Confidence 9987642 123567999999988887 599999988754321 11223345567889999998542111111 11
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~- 223 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM- 223 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999854 799999999985 56688999999986
Q ss_pred cEEEEECCC
Q 000808 907 GQEIYVGPL 915 (1275)
Q Consensus 907 g~~~~~g~~ 915 (1275)
|+++..|++
T Consensus 224 G~i~~~g~~ 232 (253)
T PRK14242 224 GKLIEVGPT 232 (253)
T ss_pred CEEEEeCCH
Confidence 789988875
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=330.66 Aligned_cols=217 Identities=19% Similarity=0.257 Sum_probs=178.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478899998873 235999999999999999999999999999999999976421 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.++.. ...++.++|++|++.+++.+||+||+.+....+. ....+..+++++++++.+|+.+ ..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG-- 146 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--
Confidence 87531 2345679999999999999999999987654321 1123344566788999999842 333333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 147 ---GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 57999999999999999999999999999999999999999999999864 689999999975 5678899999997
Q ss_pred -----cCcEEEEECCC
Q 000808 905 -----RGGQEIYVGPL 915 (1275)
Q Consensus 905 -----~gg~~~~~g~~ 915 (1275)
+.|++++.|++
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 24899999986
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=341.14 Aligned_cols=213 Identities=27% Similarity=0.438 Sum_probs=177.4
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
+..++|+|+++++. ++++||+++||+|++||.+||+|+|||||||++|+|.+..+ .+|+|.|||+
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 45699999999985 23469999999999999999999999999999999998664 3799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000808 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGL 824 (1275)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 824 (1275)
+++. +..|+.+||||||..+|. -|+.+|+.|+. ...+.+ +|-++.+..|+.+ -.+|.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8754 567889999999988875 59999998863 233333 3455566666543 33455665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.+ ..|||||||||+||||++.+|+|+++|||||.||.++...+++.+++. ..|+|+|++.|+. +..+.||+|++|+
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 43 469999999999999999999999999999999999999999999984 3589999999996 4788999999999
Q ss_pred cCcEEEEECCCCc
Q 000808 905 RGGQEIYVGPLGR 917 (1275)
Q Consensus 905 ~gg~~~~~g~~~~ 917 (1275)
+ |++...|+.++
T Consensus 560 n-G~v~e~gth~e 571 (591)
T KOG0057|consen 560 N-GTVKEYGTHSE 571 (591)
T ss_pred C-CeeEEeccHHH
Confidence 7 78999998743
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=325.83 Aligned_cols=195 Identities=31% Similarity=0.431 Sum_probs=162.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++|+|||||||||||++|+|.++|. +|+|.++|+++.+... .+.++||||.+.....+||+|-+.++..=+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~-- 104 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH-- 104 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc--
Confidence 58999999999999999999999987 9999999999876543 378999999988888999999999863210
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
. ...... .++.+..++..|+.+|+.+.++.. +..|||||||||.|||
T Consensus 105 -~--~~~~~~-------------------------~~~D~~~v~~aL~~~~~~~la~r~-----~~~LSGGerQrv~iAr 151 (258)
T COG1120 105 -L--GLFGRP-------------------------SKEDEEIVEEALELLGLEHLADRP-----VDELSGGERQRVLIAR 151 (258)
T ss_pred -c--ccccCC-------------------------CHhHHHHHHHHHHHhCcHHHhcCc-----ccccChhHHHHHHHHH
Confidence 0 000000 111222467789999998877644 5579999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||+.+|+||+||||||+||...+.++++.++++.+.. +.+++.+.|+.+.+..+||++++|++|+++.+|++++++
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999999999998654 566666899999999999999999999999999998775
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=332.31 Aligned_cols=224 Identities=25% Similarity=0.301 Sum_probs=179.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++...... ..+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67889988874110000 0113569999999999999999999999999999999999865 35899999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000808 758 QE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 828 (1275)
.. ..++.++|++|++ .+.+.+|++|++.+...... .......+++++++++.+|+. +..+..+ .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 21 1345799999996 46678999999976543111 122334456688999999996 5556554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999975 46678999999985 7
Q ss_pred EEEEECCCC
Q 000808 908 QEIYVGPLG 916 (1275)
Q Consensus 908 ~~~~~g~~~ 916 (1275)
++++.|+.+
T Consensus 228 ~i~~~g~~~ 236 (265)
T TIGR02769 228 QIVEECDVA 236 (265)
T ss_pred EEEEECCHH
Confidence 999999863
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=327.45 Aligned_cols=212 Identities=26% Similarity=0.322 Sum_probs=174.1
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35788887763 2469999999999999999999999999999999999865 34799999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000808 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE-LNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+..+++++.++ +.+..++.+ +.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCH
Confidence 21 124568999999999999999999987654321 11 1233566777776 455555554 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999975 56678999999986 78999
Q ss_pred ECCCCc
Q 000808 912 VGPLGR 917 (1275)
Q Consensus 912 ~g~~~~ 917 (1275)
.|+.++
T Consensus 213 ~~~~~~ 218 (230)
T TIGR03410 213 SGAGDE 218 (230)
T ss_pred ECCHHH
Confidence 998753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=321.50 Aligned_cols=209 Identities=24% Similarity=0.301 Sum_probs=174.0
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 5778877663 14679999999999999999999999999999999876 348999999987643
Q ss_pred -ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 759 -ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 759 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
...++.++|++|++.+++.+|+.||+.+...... . .....+++++++++.+|+.+..++.+ +.||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345679999999999999999999986543211 1 11223456788999999987777765 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 99999999999999999999999999999999999998764 899999999975 46678999999985 78888774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.00 Aligned_cols=218 Identities=27% Similarity=0.369 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 588999998773 2469999999999999999999999999999999999865 3479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ..+++.++|++|+..+++.+|+.||+.+....... ........+++++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23355789999998888889999999875321100 01111233456789999999987767665 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 56788999999985 78999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|+.+
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 98864
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=335.00 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=177.1
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++... ...+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67899988874110 011359999999999999999999999999999999999865 35899999998754
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000808 758 Q-------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGE 827 (1275)
Q Consensus 758 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 827 (1275)
. ...++.++|++|++ .+++ .|++||+.+..... ..+.++.+++++++++.+||.+ ..+..+
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP----- 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 2 12356789999996 3444 69999998764322 1233444556788999999973 445554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 479999999999999999999999999999999999999999999998777899999999975 56678999999985 7
Q ss_pred EEEEECCCC
Q 000808 908 QEIYVGPLG 916 (1275)
Q Consensus 908 ~~~~~g~~~ 916 (1275)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (280)
T PRK13649 222 KLVLSGKPK 230 (280)
T ss_pred EEEEeCCHH
Confidence 899888763
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=337.64 Aligned_cols=226 Identities=23% Similarity=0.249 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+....... ...+.+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 588999998875211000 001134699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000808 757 KQE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGE 827 (1275)
Q Consensus 757 ~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 827 (1275)
... .+++.++|++|++ .+.|.+|+.+++........ .....+.++++.++++.+||.+ ..++.+
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 431 2456799999997 57889999999976544321 2344556677899999999963 445554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
.+||||||||++|||||+.+|++|++||||++||..++..+++.|+++.++ |.|||++|||++ .+...+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999975 45678999999986
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 7999999864
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=317.49 Aligned_cols=196 Identities=30% Similarity=0.570 Sum_probs=162.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-eEEEEEEEcCcc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 755 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 755 (1275)
.++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58899999998632 13457999999999999999999999999999999999976522 458999999987
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 756 KKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 756 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
... ...++.++|++|++.+++.+||+||+.+..... .+.. ...||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999997653211 1222 2469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ ++|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 677777766644467789999999996 788776
Q ss_pred C
Q 000808 913 G 913 (1275)
Q Consensus 913 g 913 (1275)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=332.35 Aligned_cols=215 Identities=28% Similarity=0.354 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56888888763 12359999999999999999999999999999999999865 34799999998763
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 Q-----ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
. ...++.++|++|++. .+...||.||+.+..... ....++..+++.++++.++|.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 333479999998754321 2234445567889999999988877765 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+.+.+|++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998777999999999975 56678999999986 79999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|+++
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 99863
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=333.44 Aligned_cols=219 Identities=22% Similarity=0.286 Sum_probs=181.7
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 4688999998874 2359999999999999999999999999999999999865 347999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
... ...++.++|++|++.+++.+|++|++.+......+ .....+..+++++++++.+|+.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 532 22345689999999988889999999765211100 00111233456789999999987777665 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|.+ |+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 57789999999985 7899
Q ss_pred EECCCC
Q 000808 911 YVGPLG 916 (1275)
Q Consensus 911 ~~g~~~ 916 (1275)
..|+++
T Consensus 224 ~~g~~~ 229 (265)
T PRK10253 224 AQGAPK 229 (265)
T ss_pred EeCCHH
Confidence 999874
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=330.26 Aligned_cols=218 Identities=21% Similarity=0.271 Sum_probs=178.5
Q ss_pred CCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-ceEEEEEE
Q 000808 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIT 750 (1275)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~-~~~~G~i~ 750 (1275)
.+..++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345789999998873 2359999999999999999999999999999999999753 1 13579999
Q ss_pred EcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccc
Q 000808 751 ISGYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSL 821 (1275)
Q Consensus 751 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 821 (1275)
++|.+... ...++.++|++|++.+++ .|++||+.+...... ..+.++.+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 134567999999988887 899999987653221 1233444567889999999843 23333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhh
Q 000808 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELF 901 (1275)
Q Consensus 822 ~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~ 901 (1275)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEE
Confidence 257999999999999999999999999999999999999999999999854 789999999975 4667899999
Q ss_pred eeecCcEEEEECCC
Q 000808 902 LMKRGGQEIYVGPL 915 (1275)
Q Consensus 902 ~l~~gg~~~~~g~~ 915 (1275)
+|++ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9986 799999876
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=315.42 Aligned_cols=190 Identities=58% Similarity=0.943 Sum_probs=161.1
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++.. ..++++|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999887411 012469999999999999999999999999999999999643224589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
. ..+++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 4 33456789999999899999999999864210 0 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877789999999998644678899999998647888865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=322.95 Aligned_cols=213 Identities=25% Similarity=0.356 Sum_probs=175.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 48899999877411 001359999999999999999999999999999999999865 3489999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000808 757 KQET------F-TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1275)
Q Consensus 757 ~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 829 (1275)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+.+++++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 246899999999999999999998765432 1223344567889999999987776665 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999976 34 56999999986 67
Q ss_pred EEE
Q 000808 909 EIY 911 (1275)
Q Consensus 909 ~~~ 911 (1275)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=324.62 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=179.5
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
.++|+++++. .+.+++|+|++++|||+++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5778887763 23699999999999999999999999999999999998763 47999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 759 E-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 759 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
. ..++.++|++|++.+++.+|+.||+.+....+ ..+....++.++++++.+|+.+..+..+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 23467899999999988899999998765433 1223344556788999999988777665 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999998764 899999999985 46788999999986 788888864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=332.99 Aligned_cols=216 Identities=24% Similarity=0.306 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5889999987631 13469999999999999999999999999999999999865 3489999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ..+++.++|++|++. .++.+|++||+.+..... ....++.+++++++++.+|+.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 567789999998764322 1233444567889999999988777765 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|+++. + ..+|++++|.+ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 5999999999863 4 47999999986 78998
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|+.+
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 88763
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=327.98 Aligned_cols=215 Identities=22% Similarity=0.298 Sum_probs=175.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCC---CCceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~---~~~~~~G~i~~~g 753 (1275)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478899988763 245999999999999999999999999999999999952 2112479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL----RQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++ .|+.||+.+....+. ....+..++.++++++.+++.+. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 143 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKES--- 143 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCC---
Confidence 87642 123567999999988887 699999987654331 11223344567889999998642 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14245 144 --AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY 219 (250)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 35799999999999999999999999999999999999999999999985 4799999999986 5678899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |++++.|++
T Consensus 220 ~-G~~~~~~~~ 229 (250)
T PRK14245 220 M-GEMVEYDDT 229 (250)
T ss_pred C-CEEEEECCH
Confidence 6 799999986
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=331.05 Aligned_cols=217 Identities=28% Similarity=0.399 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 56788887763 2469999999999999999999999999999999999865 34799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAW-LRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
. ...++.++|++|++.+++.+||.||+.+... .+........+..+++.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 2234568999999877788999999987521 100000111233456788999999987777765 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999998777899999999986 56788999999986 7899999
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
+.+
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=363.07 Aligned_cols=222 Identities=22% Similarity=0.303 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++++. ++.+|+||||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 488999998873 2469999999999999999999999999999999999765323589999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
... ..++.+||++|++.+++.+||+||+.+....+.....+.++.+++++++++.+|+.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 432 124568999999989999999999988653321111123344566889999999988777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999777999999999975 56678999999986 799999
Q ss_pred CCCCcc
Q 000808 913 GPLGRH 918 (1275)
Q Consensus 913 g~~~~~ 918 (1275)
|++.+.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 988654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=336.56 Aligned_cols=222 Identities=17% Similarity=0.231 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC-c-eEEEEEEEcCc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGY 754 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~-~-~~~G~i~~~g~ 754 (1275)
.++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37889999887421 1124699999999999999999999999999999999997542 2 35899999998
Q ss_pred cCCcc---c----ccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccc
Q 000808 755 PKKQE---T----FTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL---RQSLV 822 (1275)
Q Consensus 755 ~~~~~---~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~ 822 (1275)
++... . .++.++|++|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+. .+..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~- 150 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY- 150 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC-
Confidence 86421 1 124689999998 47889999998866543321 22445556778999999999753 2333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhh
Q 000808 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELF 901 (1275)
Q Consensus 823 ~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~ 901 (1275)
..+|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++|||++ .+.+.+|+++
T Consensus 151 ----p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~ 225 (326)
T PRK11022 151 ----PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKII 225 (326)
T ss_pred ----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 357999999999999999999999999999999999999999999999876 4899999999986 4667899999
Q ss_pred eeecCcEEEEECCCC
Q 000808 902 LMKRGGQEIYVGPLG 916 (1275)
Q Consensus 902 ~l~~gg~~~~~g~~~ 916 (1275)
+|.+ |+++..|+.+
T Consensus 226 vm~~-G~ive~g~~~ 239 (326)
T PRK11022 226 VMYA-GQVVETGKAH 239 (326)
T ss_pred EEEC-CEEEEECCHH
Confidence 9985 8999999864
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=325.64 Aligned_cols=198 Identities=24% Similarity=0.373 Sum_probs=167.0
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000808 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLL 785 (1275)
Q Consensus 706 L~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~ 785 (1275)
|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999875 35899999998764321 12489999999999999999998
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000808 786 YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865 (1275)
Q Consensus 786 ~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~ 865 (1275)
+......+ ....++.+++++++++.+|+.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 76321111 2233444556889999999987777665 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 866 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 866 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 56788999999986 788888865
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=324.58 Aligned_cols=212 Identities=26% Similarity=0.396 Sum_probs=179.4
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5778887763 2369999999999999999999999999999999999865 348999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 759 E-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 759 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
. ..++.++|++|++.+++.+|+.||+.+....+ ..+.....+.++++++.+++.+..++.. +.||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23467899999999999999999998765432 1223334456789999999987777665 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 899999999985 56788999999985 789999886
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=329.35 Aligned_cols=217 Identities=24% Similarity=0.273 Sum_probs=177.3
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---ceEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~---~~~~G~i~~~ 752 (1275)
..++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 18 ~~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~ 84 (267)
T PRK14235 18 IKMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 (267)
T ss_pred ceEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 3689999998873 23599999999999999999999999999999999997542 1357999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc----cccccc
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL----RQSLVG 823 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~ 823 (1275)
|.++.. ..+++.++|++|++.+++. |+.||+.+....+. ......+..++++++++.+++.+. .+..
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 160 (267)
T PRK14235 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEP-- 160 (267)
T ss_pred CEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCC--
Confidence 987642 1245678999999888874 99999988654331 111223344567889999999642 2333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 824 ~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+...+|++++|
T Consensus 161 ---~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l 235 (267)
T PRK14235 161 ---GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFF 235 (267)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999865 789999999976 466789999999
Q ss_pred ecCcEEEEECCC
Q 000808 904 KRGGQEIYVGPL 915 (1275)
Q Consensus 904 ~~gg~~~~~g~~ 915 (1275)
++ |+++..|+.
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14235 236 HL-GNLVEVGDT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 799999875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=330.73 Aligned_cols=219 Identities=26% Similarity=0.354 Sum_probs=177.6
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc------eEEEEEEE
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 751 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~------~~~G~i~~ 751 (1275)
++++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56888887763 246999999999999999999999999999999999976532 12799999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000808 752 SGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL-PPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1275)
Q Consensus 752 ~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 827 (1275)
+|.+... ..+++.++|++|++..++.+|++||+.+...... .......+.+++++++++.+|+.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987642 2334568999999876667999999987532110 001111234456788999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhh
Q 000808 828 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESF 897 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 897 (1275)
..||||||||++|||+|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 469999999999999999 599999999999999999999999999998765 899999999986 566789
Q ss_pred hhhheeecCcEEEEECCCC
Q 000808 898 DELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 898 d~~~~l~~gg~~~~~g~~~ 916 (1275)
|++++|.+ |+++..|+.+
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999986 7999999864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=333.72 Aligned_cols=218 Identities=23% Similarity=0.279 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCce-EEEEEEEcCcc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 755 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 755 (1275)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..++.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999987731 12359999999999999999999999999999999999765321 13899999988
Q ss_pred CCc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 756 KKQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
... ...++.+||++|++. .++..||+||+.|..... ..+.++.+++++++++.+||.+..+..+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 643 123567899999974 567789999998764322 2344555667889999999988777765 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. + ..+|++++|.+ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 8999999999863 4 57999999985 7999
Q ss_pred EECCCC
Q 000808 911 YVGPLG 916 (1275)
Q Consensus 911 ~~g~~~ 916 (1275)
..|+++
T Consensus 223 ~~g~~~ 228 (282)
T PRK13640 223 AQGSPV 228 (282)
T ss_pred EeCCHH
Confidence 999863
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=318.99 Aligned_cols=225 Identities=22% Similarity=0.311 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC-C-c-eEEEEEEEcCc
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YITGNITISGY 754 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~ 754 (1275)
++++|++.++.... +..++++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 56788887775321 23569999999999999999999999999999999999765 2 3 45789999998
Q ss_pred cCCc---c----cccceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000808 755 PKKQ---E----TFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825 (1275)
Q Consensus 755 ~~~~---~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 825 (1275)
++-. + .+.+.+++++|++. +.|.+|+.+.+.-......... .+++..+++.++|+.+|+.+.....- .
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~--~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLK--S 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHh--h
Confidence 6532 1 12357999999964 6788999888865554322111 34556778899999999986532221 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.+.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|++|||+. -+.+.+|||+||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 2457999999999999999999999999999999999999999999999986 5999999999986 4789999999999
Q ss_pred cCcEEEEECCCC
Q 000808 905 RGGQEIYVGPLG 916 (1275)
Q Consensus 905 ~gg~~~~~g~~~ 916 (1275)
. |++|..|+..
T Consensus 229 a-G~iVE~g~~~ 239 (316)
T COG0444 229 A-GRIVEEGPVE 239 (316)
T ss_pred C-cEEEEeCCHH
Confidence 5 8999999974
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=324.86 Aligned_cols=201 Identities=29% Similarity=0.407 Sum_probs=168.8
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc--ccccceEEEec-cCCCCCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFTRISGYCE-QNDIHSPF 777 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 777 (1275)
+.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34579999999999999999999999999999999999865 348999999986432 23456789997 55677788
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000808 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPt 857 (1275)
+|++|++.+....+ ....++..+.++++++.+|+.+..++.+ ..||||||||++||++|+.+|++++|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998765433 1233444556788999999988777765 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 858 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 858 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999985 56778999999986 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=330.29 Aligned_cols=216 Identities=24% Similarity=0.297 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 5889999988731 12359999999999999999999999999999999999865 3489999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ...++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+++.+..+..+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567899999974 677789999998764322 2233444566889999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 344 4999999986 79999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|+++
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99874
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=334.21 Aligned_cols=220 Identities=20% Similarity=0.307 Sum_probs=177.5
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 3588999998874110 001359999999999999999999999999999999999865 347999999987
Q ss_pred CCc--------ccccceEEEeccCCCC-CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 000808 756 KKQ--------ETFTRISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLP 825 (1275)
Q Consensus 756 ~~~--------~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 825 (1275)
... ..+++.++|++|++.. +...|++||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--- 148 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP--- 148 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh---
Confidence 531 2345678999999732 22369999998764321 123344445678899999994 5566554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheee
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|+
T Consensus 149 --~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~ 225 (289)
T PRK13645 149 --FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH 225 (289)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999998764 899999999986 5678899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |++++.|+.
T Consensus 226 ~-G~i~~~g~~ 235 (289)
T PRK13645 226 E-GKVISIGSP 235 (289)
T ss_pred C-CEEEEeCCH
Confidence 6 789998875
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=326.08 Aligned_cols=215 Identities=21% Similarity=0.270 Sum_probs=175.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC-ceEEEEEEEcCccC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 756 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 756 (1275)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788888773 23599999999999999999999999999999999997531 24589999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCCCCCC
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL----RQSLVGLPGESG 829 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~~~~~~ 829 (1275)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .......+++++++++.+++.+. .+.. .+.
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALA 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHhcCC-----ccc
Confidence 43 234567899999998887 6999999886543311 01123344567889999999532 2332 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++ |++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999864 899999999985 56788999999986 799
Q ss_pred EEECCC
Q 000808 910 IYVGPL 915 (1275)
Q Consensus 910 ~~~g~~ 915 (1275)
+..|+.
T Consensus 220 ~~~g~~ 225 (246)
T PRK14269 220 IEFGES 225 (246)
T ss_pred EEECCH
Confidence 999875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=312.98 Aligned_cols=181 Identities=26% Similarity=0.369 Sum_probs=150.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+|||||||||||++|.|...|+ +|.|.++|.++..... ++.+|||+|+..++|++||+||+.+.+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 48999999999999999999999997 9999999988765431 3579999999999999999999999776
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
+.+...+ +.....+.+++.+||++..+ ++++..|||||||||
T Consensus 110 ~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRV 151 (226)
T COG1136 110 IAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRV 151 (226)
T ss_pred HcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHH
Confidence 5442110 11223567888999986554 245678999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeE
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i 224 (1275)
+|||||+.+|++++.||||.+||+.++..+++.++++++.. ++++++++|+. ++...|||++.|.+|++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd~-~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHDP-ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999987654 55555567765 67789999999999984
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=319.09 Aligned_cols=189 Identities=23% Similarity=0.365 Sum_probs=161.2
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC---c----ccccceEEEeccCCCCC
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFTRISGYCEQNDIHS 775 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 775 (1275)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999865 34899999998742 1 12346799999999999
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000808 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855 (1275)
Q Consensus 776 ~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDE 855 (1275)
+.+|++||+.+..... .....+..++++++++.+|+.+..++.+ .+||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998865432 1233444567889999999988777765 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 856 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 856 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
||+|||+.+...+.+.|+++.++|+|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777899999999975 44678988765
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=332.83 Aligned_cols=220 Identities=20% Similarity=0.288 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++... ....+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 478999998874110 0013469999999999999999999999999999999999866 3489999999876
Q ss_pred Cc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 757 KQ----ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. ...++.+||++|++. .+...|+.|++.|..... .....+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 224567999999974 233468999998865422 2234455567899999999988877775 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999987 344 4999999986 7899
Q ss_pred EECCCC
Q 000808 911 YVGPLG 916 (1275)
Q Consensus 911 ~~g~~~ 916 (1275)
..|+++
T Consensus 224 ~~g~~~ 229 (280)
T PRK13633 224 MEGTPK 229 (280)
T ss_pred EecCHH
Confidence 999864
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=325.99 Aligned_cols=209 Identities=26% Similarity=0.352 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 478899988763 2359999999999999999999999999999999999865 3479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSg 832 (1275)
.. ...++.++|++|++.+++ .|++||+.+....+ . ...++++++++.+++. +..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCH
Confidence 32 234567899999988876 69999997653221 1 1134577899999996 4555543 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 56778999999986 78898
Q ss_pred ECCC
Q 000808 912 VGPL 915 (1275)
Q Consensus 912 ~g~~ 915 (1275)
.|++
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8876
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=335.69 Aligned_cols=225 Identities=20% Similarity=0.293 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-eEEEEEEEcCcc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 755 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 755 (1275)
.++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58899999887421 12346999999999999999999999999999999999976531 237999999988
Q ss_pred CCc---cc---c-cceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000808 756 KKQ---ET---F-TRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1275)
Q Consensus 756 ~~~---~~---~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 826 (1275)
+.. .. + ++.++|++|++ .+.|.+|+.+++........ ..+.++..+++.++++.+||.+..+.. +..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~--~~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM--KMY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh--cCC
Confidence 643 11 1 24799999998 67899999999876654321 234455566788999999997533221 122
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
+.+||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999999998765 899999999986 46678999999985
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 238 -G~ive~g~~~ 247 (330)
T PRK09473 238 -GRTMEYGNAR 247 (330)
T ss_pred -CEEEEECCHH
Confidence 7999999864
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=327.22 Aligned_cols=224 Identities=22% Similarity=0.260 Sum_probs=180.4
Q ss_pred CCCCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---ceEEEE
Q 000808 672 PFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGN 748 (1275)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~---~~~~G~ 748 (1275)
|..+..++++|++++++ .+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445799999998873 24699999999999999999999999999999999997542 135899
Q ss_pred EEEcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 000808 749 ITISGYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823 (1275)
Q Consensus 749 i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 823 (1275)
|.++|.+... ...++.++|++|++.+++ .|++||+.+..... + ....+..++++.++++.+++.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987632 123567899999988887 69999998864322 1 12333445668889999998542211111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 824 ~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
...+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++.+.+|++++|
T Consensus 159 -~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 -KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEE
Confidence 12357999999999999999999999999999999999999999999999854 799999999986 577889999999
Q ss_pred ecCcEEEEECCC
Q 000808 904 KRGGQEIYVGPL 915 (1275)
Q Consensus 904 ~~gg~~~~~g~~ 915 (1275)
++ |+++..|++
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14237 236 YL-GDLIEYDKT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 799999986
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=322.19 Aligned_cols=211 Identities=27% Similarity=0.387 Sum_probs=177.9
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.+. . ++|+|+|++++|||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~ 65 (235)
T cd03299 2 KVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITN 65 (235)
T ss_pred eeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCc
Confidence 4677776652 1 28999999999999999999999999999999999865 347999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 759 E-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 759 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
. ..++.++|++|++.+++.+|+.||+.+..... .....+.++.+.++++.+||.+..++.+ +.||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 137 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQR 137 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHH
Confidence 1 23457899999999999999999998764332 1223444556788999999988777765 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998764 899999999985 46778999999986 789998875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=311.90 Aligned_cols=190 Identities=50% Similarity=0.846 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCC--CCceEEEEEEEcCc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 754 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 754 (1275)
.++++|+++.++... ....+++|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 578999998874210 001246999999999999999999999999999999999986 5 45899999998
Q ss_pred cCCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 755 PKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 755 ~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
+......++.++|++|++.+++.+|++||+.+...+. .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754345667999999998889999999997642110 399999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999987567788999999986 7887754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=329.10 Aligned_cols=215 Identities=22% Similarity=0.263 Sum_probs=175.2
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---ceEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~---~~~~G~i~~~ 752 (1275)
..++++|++++++ .+.+|+|+||+|++||+++|+||||||||||+++|+|..+. .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4689999998873 23599999999999999999999999999999999997542 1358999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVG 823 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 823 (1275)
|.+... ...++.++|++|++.+++ .||+||+.+....+. ... ..+++++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 234557899999998887 499999988754331 111 23445677888888742 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 824 ~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 357999999999999999999999999999999999999999999999854 789999999986 577899999999
Q ss_pred ec----------CcEEEEECCC
Q 000808 904 KR----------GGQEIYVGPL 915 (1275)
Q Consensus 904 ~~----------gg~~~~~g~~ 915 (1275)
++ .|++++.|++
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 85 2678999986
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=336.24 Aligned_cols=224 Identities=17% Similarity=0.204 Sum_probs=178.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--ceEEEEEEEcCc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGY 754 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 754 (1275)
-++++|+++.+... .+.+.+|+|||++|++||+++|+|+||||||||+++|+|..+. .+.+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37889999887421 1234699999999999999999999999999999999997642 235799999998
Q ss_pred cCCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCC---CCHHHHHHHHHHHHHHcCCCccc---c
Q 000808 755 PKKQE---T----FTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVELNPLR---Q 819 (1275)
Q Consensus 755 ~~~~~---~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~---~~~~~~~~~~~~~l~~l~l~~~~---~ 819 (1275)
++... . .++.++||+|++. +.|.+||.+++........... ....+.++++.++++.+||.+.. +
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 76421 1 1346999999976 5688999999975422110000 11223456788999999997532 3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhh
Q 000808 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFD 898 (1275)
Q Consensus 820 ~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d 898 (1275)
.. +.+|||||||||+||+||+.+|++|++||||+|||+.++..+.+.|+++.++ |.|||++|||++ .+.+.+|
T Consensus 154 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 33 3579999999999999999999999999999999999999999999998764 899999999985 5668899
Q ss_pred hhheeecCcEEEEECCCC
Q 000808 899 ELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 899 ~~~~l~~gg~~~~~g~~~ 916 (1275)
++++|.+ |+++..|+.+
T Consensus 228 ri~vm~~-G~ive~g~~~ 244 (330)
T PRK15093 228 KINVLYC-GQTVETAPSK 244 (330)
T ss_pred EEEEEEC-CEEEEECCHH
Confidence 9999985 8999999863
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=323.08 Aligned_cols=211 Identities=24% Similarity=0.305 Sum_probs=175.9
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++ ++ ..|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 56889988873 11 238999999999999999999999999999999865 34799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 758 QE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 758 ~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+|+.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 124568999999999999999999976532111 11 1234556889999999988777776 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 56778999999986 799999876
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=316.17 Aligned_cols=193 Identities=27% Similarity=0.411 Sum_probs=159.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccc---cccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH---DVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~---~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++|+||||||||||+|+|+|.++|. +|+|.+.|.+......+..+|||||. |+-|| .||+|-+..+..-+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~- 106 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKK- 106 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccc-
Confidence 58999999999999999999999987 99999999887766556789999994 44444 699999998632110
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
.......+ +....+++.|+.+|+.+..|..+| .|||||+|||-|||
T Consensus 107 ----g~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lAR 152 (254)
T COG1121 107 ----GWFRRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLAR 152 (254)
T ss_pred ----cccccccH-------------------------HHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHH
Confidence 00000000 112357888999999988887776 59999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
||+++|++|+|||||+|+|+.++..+.+.|+++.+. +.+|++++|+...+.++||+|+.| ++++.+.|+++++.+
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999999999999999998664 666777999999999999999999 557899999988753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=324.81 Aligned_cols=221 Identities=21% Similarity=0.286 Sum_probs=178.1
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--Cc-eEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~~-~~~G~i~~~ 752 (1275)
..++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +. +.+|+|.++
T Consensus 3 ~~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 3 NKVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred cEEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 3588999998873 2359999999999999999999999999999999999753 21 247999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 827 (1275)
|.++.. ..+++.++|++|++.+++.+|++||+.+...... ..+..+.+++++++++.+++.+....... ...
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 146 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNA 146 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 2346679999999999999999999987543221 12233344567889999998642111111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.+ |
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G 223 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-G 223 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 689999999975 56688999999985 7
Q ss_pred EEEEECCC
Q 000808 908 QEIYVGPL 915 (1275)
Q Consensus 908 ~~~~~g~~ 915 (1275)
+++..|+.
T Consensus 224 ~i~~~~~~ 231 (252)
T PRK14256 224 DLVECGET 231 (252)
T ss_pred EEEEeCCH
Confidence 99999986
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=333.40 Aligned_cols=222 Identities=18% Similarity=0.239 Sum_probs=179.1
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---ceEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~---~~~~G~i~~~ 752 (1275)
..++++|+++++.. +.+.+|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.+|
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46999999988741 124599999999999999999999999999999999997531 2347999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCCC
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD-SETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 826 (1275)
|.++.. ...++.++|++|++.+++ .|++||+.|..... ..+ .+..++.++++++.++|.+..++.++. .
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~ 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-A 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-C
Confidence 998742 234667999999998875 79999999864321 122 222334567888888875433333332 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~- 299 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ- 299 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999875 699999999975 46677999999986
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++..|++.
T Consensus 300 G~i~e~g~~~ 309 (329)
T PRK14257 300 GWIEEAGETK 309 (329)
T ss_pred CEEEEeCCHH
Confidence 7999999873
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=340.15 Aligned_cols=191 Identities=24% Similarity=0.380 Sum_probs=167.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000808 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 780 (1275)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999865 348999999987532 1235679999999999999999
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000808 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1275)
Q Consensus 781 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgL 860 (1275)
+||+.|... ...+++++++++.+||.+..+..+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112346789999999988777765 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 861 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 861 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
|+.++..+.+.|+++.++ |+|+|++||+++ ++..++|++++|++ |+++..|++.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999998765 899999999985 67889999999986 7999999874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=340.37 Aligned_cols=195 Identities=24% Similarity=0.375 Sum_probs=169.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000808 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 780 (1275)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999865 348999999987532 1235679999999999999999
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000808 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1275)
Q Consensus 781 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgL 860 (1275)
+||+.|+.... ...+.+++++++++.+||.+..++.+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12334556889999999988877765 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 861 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 861 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999998765 899999999986 57788999999986 7999999863
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=327.75 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++++..+.. ....+.+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3789999988742110 000112469999999999999999999999999999999999876 3489999999876
Q ss_pred Ccc---cccceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCC
Q 000808 757 KQE---TFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGL 830 (1275)
Q Consensus 757 ~~~---~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~l 830 (1275)
... ..++.++|++|++. +++.+|+.|++.+....+. .....+..+.++++++.+|+. +..+..+ ..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhc
Confidence 421 22356899999975 5678899999987654332 122334455688999999994 5555544 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 831 SgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999985 56678999999985 789
Q ss_pred EEECCC
Q 000808 910 IYVGPL 915 (1275)
Q Consensus 910 ~~~g~~ 915 (1275)
+..|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 888875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=324.79 Aligned_cols=215 Identities=27% Similarity=0.307 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-ceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 753 (1275)
-++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999998873 2359999999999999999999999999999999999632 2 12479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 123567999999998887 899999987654321 1122334456788899998753 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 689999999975 5778899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 789999986
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=317.62 Aligned_cols=191 Identities=24% Similarity=0.381 Sum_probs=162.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000808 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 780 (1275)
|+|+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999865 348999999987531 1234578999999999989999
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000808 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1275)
Q Consensus 781 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgL 860 (1275)
+||+.+..... .....+++++++++.+|+.+..+..+ ..||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 22334456788999999987666654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 861 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 861 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999998765 899999999975 46678999999986 7887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=325.77 Aligned_cols=215 Identities=20% Similarity=0.267 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--Cc-eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 753 (1275)
-++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 488999998763 2359999999999999999999999999999999999753 11 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL----RQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++. |++||+.+...... ....++.+++++++++.+++.+. .+..
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87632 1335678999999888875 99999987643321 11233445567888999998542 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 799999999985 5678899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|++
T Consensus 229 ~-G~i~~~g~~ 238 (259)
T PRK14274 229 M-GELVECNDT 238 (259)
T ss_pred C-CEEEEECCH
Confidence 5 799999986
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=337.28 Aligned_cols=212 Identities=25% Similarity=0.373 Sum_probs=179.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|++++|+.+ ..++|+|+|+++++||++||+|+||||||||++.|.|..+ +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 79999999998632 2469999999999999999999999999999999999765 3589999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS-------LVGLPG 826 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 826 (1275)
.. ...++.+++++|...+|. -|+++||..+. ++.+ ++.+.++++.+||.+.... .+|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 335667899999987775 59999997652 2233 3447889999999876543 4443 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
++.||||||||++|||+|++|.++++|||||.|||+.+.+++++.+.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 568999999999999999999999999999999999999999999988765 899999999976 4688999999996
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++..|...
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 7999999874
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.85 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=177.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-e--EEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~--~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+.. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 588999998773 235999999999999999999999999999999999975421 2 479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.++.. ...++.++|++|++.+++ .|++||+.+....+. .....+.+++++++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 123457899999998887 899999987654331 1122334456788899998842 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 357999999999999999999999999999999999999999999999865 699999999986 5778899999997
Q ss_pred c----CcEEEEECCCC
Q 000808 905 R----GGQEIYVGPLG 916 (1275)
Q Consensus 905 ~----gg~~~~~g~~~ 916 (1275)
+ .|+++..|++.
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999999863
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.82 Aligned_cols=219 Identities=19% Similarity=0.258 Sum_probs=174.0
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--Cc-eEEEEEEEcCc
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISGY 754 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~~-~~~G~i~~~g~ 754 (1275)
-+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 45778887663 2469999999999999999999999999999999999753 11 25799999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000808 755 PKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1275)
Q Consensus 755 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 829 (1275)
++.. ...++.++|++|++.+++. |++||+.+....+. ........++.++++++.+|+.+....... .....
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhh
Confidence 7532 1245678999999888875 99999987643321 111223344567889999998652111111 11357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 56778999999996 789
Q ss_pred EEECCC
Q 000808 910 IYVGPL 915 (1275)
Q Consensus 910 ~~~g~~ 915 (1275)
+..|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.35 Aligned_cols=216 Identities=21% Similarity=0.241 Sum_probs=176.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 578999988763 235999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++ .|++||+.+...... ....++.+++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87642 123566899999998887 899999987654321 1123344556788999998742 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 357999999999999999999999999999999999999999999999876 689999999985 5678899999998
Q ss_pred cCcEEEEECCCC
Q 000808 905 RGGQEIYVGPLG 916 (1275)
Q Consensus 905 ~gg~~~~~g~~~ 916 (1275)
+ |+++..|+++
T Consensus 221 ~-G~i~~~~~~~ 231 (251)
T PRK14270 221 M-GDLIEFNKTE 231 (251)
T ss_pred C-CeEEEeCCHH
Confidence 6 7899999863
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=322.65 Aligned_cols=215 Identities=21% Similarity=0.298 Sum_probs=175.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+.. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478899998773 235999999999999999999999999999999999964311 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++ .|++||+.+....+. ....++.+++++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 124567899999988887 899999988654321 1123344566788888888743 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999854 799999999975 5678899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 789998875
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=297.58 Aligned_cols=207 Identities=24% Similarity=0.374 Sum_probs=179.1
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc---ccccceEEEeccCCCCCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPF 777 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 777 (1275)
+++.+|+++|..|++|.+++|+|||||||||||.+++...+ ..+|+|+++|.++.. ..+.+..+..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 45689999999999999999999999999999999998765 348999999998753 3345667888899888889
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000808 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPt 857 (1275)
+||+|-+.|+..-. ......++.+..++++++.++|++..|+.. .+||||||||.-||+.++++.+.++||||.
T Consensus 90 lTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 99999999873211 122334556678999999999999999987 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCc
Q 000808 858 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 858 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 917 (1275)
++||...+..+|+.|++++++ |+||+++.||.+. .-.+.|+|+-|++ |+++..|++++
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 999999999999999999876 9999999999874 4567899999996 79999999864
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=356.67 Aligned_cols=220 Identities=25% Similarity=0.320 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899998773 24699999999999999999999999999999999998653 489999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 757 KQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
... ..++.++|++|++.+++.+||+|++.++...+.. ...+..+.+++++++++.+|+.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 321 1245689999999899999999999886432211 11223334556889999999988777766 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999777899999999986 57788999999986 79999
Q ss_pred ECCCCcc
Q 000808 912 VGPLGRH 918 (1275)
Q Consensus 912 ~g~~~~~ 918 (1275)
.|+..+.
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9988654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=321.64 Aligned_cols=215 Identities=23% Similarity=0.321 Sum_probs=175.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
-++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 378899988763 235999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL----RQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 143 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP--- 143 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87542 123567999999998887 899999987654321 11223344567888999988542 3333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
..+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|+
T Consensus 144 --~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~ 219 (250)
T PRK14262 144 --GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY 219 (250)
T ss_pred --hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 799999999975 4778899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|++
T Consensus 220 ~-G~i~~~g~~ 229 (250)
T PRK14262 220 R-GELIEYGPT 229 (250)
T ss_pred C-CEEEEecCH
Confidence 6 789998876
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=326.59 Aligned_cols=217 Identities=23% Similarity=0.293 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899999887410 12359999999999999999999999999999999999876 3589999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 567789999998764322 1233444567889999999988777654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998775 8999999999863 4 46999999996 78999
Q ss_pred ECCCC
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99863
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=320.01 Aligned_cols=201 Identities=24% Similarity=0.310 Sum_probs=166.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc--eEEEEEEEcCccCCcccc-cceEEEeccCCC--CCCCCC
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-TRISGYCEQNDI--HSPFVT 779 (1275)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lt 779 (1275)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999986530 158999999987653222 357899999984 556789
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000808 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN---PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1275)
Q Consensus 780 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEP 856 (1275)
+.|++.+...... ...+..+++++++++.+++. +..+..+ ..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 11233456688999999997 3444444 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCC
Q 000808 857 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 915 (1275)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999986 56778999999986 799998876
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=323.90 Aligned_cols=215 Identities=25% Similarity=0.269 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc-
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 755 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 755 (1275)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 488999998763 2359999999999999999999999999999999999865 347999999986
Q ss_pred ----CCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000808 756 ----KKQE---T----FTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSL 821 (1275)
Q Consensus 756 ----~~~~---~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 821 (1275)
+... . .++.++|++|++. +.+.+|+.||+.+..... . .....+.++.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 567789999987643211 1 1122234556788999999964 44554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhh
Q 000808 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEL 900 (1275)
Q Consensus 822 ~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 900 (1275)
+ ..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|+++ .+...+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4 479999999999999999999999999999999999999999999998764 899999999975 466689999
Q ss_pred heeecCcEEEEECCC
Q 000808 901 FLMKRGGQEIYVGPL 915 (1275)
Q Consensus 901 ~~l~~gg~~~~~g~~ 915 (1275)
++|++ |++++.|++
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 799999976
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=323.84 Aligned_cols=216 Identities=23% Similarity=0.262 Sum_probs=176.9
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---ceEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~---~~~~G~i~~~ 752 (1275)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+. .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 4689999998873 23599999999999999999999999999999999997542 1358999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVG 823 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 823 (1275)
|.+... ...++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 165 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN-- 165 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC--
Confidence 987642 1345679999999988885 99999987654321 1122233456788899988863 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 824 ~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 166 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 166 ---AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999875 789999999975 567789999999
Q ss_pred ecCcEEEEECCC
Q 000808 904 KRGGQEIYVGPL 915 (1275)
Q Consensus 904 ~~gg~~~~~g~~ 915 (1275)
++ |+++..|+.
T Consensus 241 ~~-G~i~~~g~~ 251 (272)
T PRK14236 241 YM-GKLVEYGDT 251 (272)
T ss_pred EC-CEEEecCCH
Confidence 86 799999876
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=357.51 Aligned_cols=219 Identities=26% Similarity=0.311 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++ ++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 488999998773 2469999999999999999999999999999999999865 3479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhcc--C-CC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000808 757 KQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLR--L-PP-EVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1275)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~--~-~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 828 (1275)
... ..++.++|++|++.+++.+||+||+.+..... . .. ..+.++.+++++++++.+|+.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12346899999999999999999998753210 0 00 0122344567889999999988777776 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 69999999999999999999999999999999999999999999999877999999999975 56678999999985 78
Q ss_pred EEEECCCCc
Q 000808 909 EIYVGPLGR 917 (1275)
Q Consensus 909 ~~~~g~~~~ 917 (1275)
+++.|++++
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999998764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=313.94 Aligned_cols=201 Identities=23% Similarity=0.284 Sum_probs=171.3
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++++. ++.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 588999988763 23599999999999999999999999999999999998653 479999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
.....++.++|++|++.+++.+|+.||+.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543334568999999988888999999987654321 11 2345678899999987777765 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
|++|||+++.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998878899999999986 5778899998886
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=321.27 Aligned_cols=216 Identities=24% Similarity=0.282 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCce---EEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~---~~G~i~~~g 753 (1275)
-++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477889988763 2469999999999999999999999999999999999754322 379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1335578999999999999999999987653221 1122333455677777777642 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999864 799999999986 5667899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |++++.|++
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 789999886
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=314.67 Aligned_cols=211 Identities=23% Similarity=0.345 Sum_probs=175.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+... .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5788888876310 112569999999999999999999999999999999999765 35899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+|+.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999999998999999988654321 1233445567889999999987777665 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +|+|||+++|+++ ..+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999975 4578999999986 554
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=369.01 Aligned_cols=211 Identities=24% Similarity=0.387 Sum_probs=175.4
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|+++.+. +++++|+|+|++++|||++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 4699999987542 1246999999999999999999999999999999999977 4 37999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 825 (1275)
... ..+++.++||+|++.++. .|++||+.++. ++.++ ++++++++..++.+ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 653 456788999999998886 59999998752 12333 33566666666543 336777754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|+||+||||||+||++++..+.+.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 483 -G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 -AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999875 4799999999984 5678999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 559 -G~i~e~G~~~ 568 (588)
T PRK11174 559 -GQIVQQGDYA 568 (588)
T ss_pred -CeEeecCCHH
Confidence 7999999853
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=321.98 Aligned_cols=222 Identities=22% Similarity=0.267 Sum_probs=177.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 588999998873 235999999999999999999999999999999999975431 1369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 828 (1275)
.+... ...++.++|++|++.+++ .|+.||+.+...... .....+.++++.++++.+++.+..+...+ ....
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87521 133567899999988888 899999987643221 11223334567889999998542211111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecC-
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRG- 906 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~g- 906 (1275)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ +|+|||+++|+++ ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999985 577899999999863
Q ss_pred ---cEEEEECCCC
Q 000808 907 ---GQEIYVGPLG 916 (1275)
Q Consensus 907 ---g~~~~~g~~~ 916 (1275)
|+++++|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 7999999873
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=300.01 Aligned_cols=200 Identities=25% Similarity=0.324 Sum_probs=162.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+|||||||||||++|.|..+|+ +|+|.+||.++.... .++.+||++|+..+.+.+||.+|++.+..-
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 58999999999999999999999987 999999998875543 357899999999999999999999986532
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
+. ..+... ..+. ..+.+..+-+.|+.+|+.+.+.++.+ +|||||+|||+
T Consensus 109 ~~-----s~~~sl------fglf---------------sk~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVa 157 (258)
T COG3638 109 YT-----STWRSL------FGLF---------------SKEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVA 157 (258)
T ss_pred cc-----hHHHHH------hCCC---------------CHHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHH
Confidence 11 111100 0111 11122233456899999888776554 69999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|+|+|-|||+++|||.+++++++.|++.+...+.| ++...|..+-+.++||||+-|++|+|+|+||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~T-vi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGIT-VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCE-EEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 9999999999999999999999999999999999998765445 555677788999999999999999999999998875
Q ss_pred H
Q 000808 235 D 235 (1275)
Q Consensus 235 ~ 235 (1275)
+
T Consensus 237 ~ 237 (258)
T COG3638 237 D 237 (258)
T ss_pred H
Confidence 4
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=320.96 Aligned_cols=214 Identities=21% Similarity=0.279 Sum_probs=174.4
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc--eEEEEEEEcC
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISG 753 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~--~~~G~i~~~g 753 (1275)
..++++|++++++ +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 4688999998762 25999999999999999999999999999999999986531 1579999999
Q ss_pred ccCCcccc-cceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCC
Q 000808 754 YPKKQETF-TRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP---LRQSLVGLPGE 827 (1275)
Q Consensus 754 ~~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~ 827 (1275)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .+++++++++.+++.+ ..++.+
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~----- 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYP----- 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCC-----
Confidence 87643222 356899999974 4466799998866433211 111 2356788999999976 234443
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999975 46678999999985
Q ss_pred cEEEEECCC
Q 000808 907 GQEIYVGPL 915 (1275)
Q Consensus 907 g~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 789998886
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=321.08 Aligned_cols=215 Identities=24% Similarity=0.266 Sum_probs=174.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888888763 245999999999999999999999999999999999975421 2479999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 000808 754 YPKKQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGLP 825 (1275)
Q Consensus 754 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 825 (1275)
.+... ...++.++|++|++.+++ .|+.||+.+...... ....+..++++.++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 142 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSH---- 142 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcC----
Confidence 87531 234567899999998887 899999987643221 1122333456778888888753 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 143 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~ 219 (249)
T PRK14253 143 -AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM 219 (249)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999875 589999999985 57778999999986
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 220 -G~i~~~g~~ 228 (249)
T PRK14253 220 -GELVEHDDT 228 (249)
T ss_pred -CEEEEeCCH
Confidence 799998875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=312.12 Aligned_cols=187 Identities=24% Similarity=0.323 Sum_probs=159.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56788887763 2459999999999999999999999999999999999866 34799999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
. ..+++.++|++|++.+++.+|+.||+.+...... . ..+++++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999999988899999999987654321 1 12356788999999987777664 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1275)
||++||+||+++|++++|||||+|||+.+...+.+.|++++++|+|||+++|+++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 9999999999999999999999999999999999999998777899999999975
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=356.19 Aligned_cols=123 Identities=24% Similarity=0.306 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEE
Q 000808 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPGESGLSTEQRKRLTIAVELVANP---SIIFM 853 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p---~illl 853 (1275)
+|+.|++.|...+. . .....+.++.+||... .+..+ ..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865432 1 1124578999999753 45444 469999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee-----cCcEEEEECCCC
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK-----RGGQEIYVGPLG 916 (1275)
Q Consensus 854 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gg~~~~~g~~~ 916 (1275)
||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. +||++++.|+++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 9999999999999999999999878999999999975 446899999994 478999999863
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=325.27 Aligned_cols=219 Identities=23% Similarity=0.392 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 588999998773 12469999999999999999999999999999999999865 3489999999876
Q ss_pred CcccccceEEEeccCCCCC--CCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 757 KQETFTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
.....++.++|++|++.+. ...+++|++.+....... ........+++++++++.+|+.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997653 234788888653211000 01111223456788999999988777765 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999998777999999999975 567889998666 4 7999999
Q ss_pred CCCc
Q 000808 914 PLGR 917 (1275)
Q Consensus 914 ~~~~ 917 (1275)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8753
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=310.99 Aligned_cols=195 Identities=27% Similarity=0.331 Sum_probs=164.7
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 5678877663 24699999999999999999999999999999999998653 47999999987532
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
..+++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23456789999999888899999999875311 1 2345788999999987777665 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
|++|||+|+.+|++++|||||+|||+.+...+.+.|+++.++|+|+|+++|++. +....+|+++.+
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999975 566777887665
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=324.84 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=174.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-ceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999998873 2359999999999999999999999999999999999632 1 02579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 824 (1275)
.++.. ...++.++|++|++.+++. |+.||+.+....+. ..+....++++.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988875 99999988654321 112233345677888888874 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 689999999986 4667899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 6 789999886
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=322.94 Aligned_cols=215 Identities=20% Similarity=0.252 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-ceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 753 (1275)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998873 2459999999999999999999999999999999999632 1 13579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1235678999999988874 99999987643221 1112233455778888888852 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 689999999975 5678899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 6 799999875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=324.49 Aligned_cols=212 Identities=19% Similarity=0.289 Sum_probs=173.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++. +...+|+|+|++|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988741 12359999999999999999999999999999999999865 269999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL------PGE 827 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~~ 827 (1275)
.. ...++.++|++|++.+++ .|++||+.... ... ++.+.+.++.+||.+..+...+. +..
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234667999999999887 49999995321 111 23467788889998765554431 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
..||||||||++|||||+.+|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++ ....+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999974 3456999999986 7
Q ss_pred EEEEECCCCc
Q 000808 908 QEIYVGPLGR 917 (1275)
Q Consensus 908 ~~~~~g~~~~ 917 (1275)
+++++|++.+
T Consensus 213 ~i~~~g~~~~ 222 (275)
T cd03289 213 KVRQYDSIQK 222 (275)
T ss_pred eEeecCCHHH
Confidence 9999999843
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=319.92 Aligned_cols=215 Identities=25% Similarity=0.326 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--c-eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 753 (1275)
.++++|+++++. .+++|+|+|++|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999998873 23599999999999999999999999999999999997541 1 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 123567899999988876 799999987643221 1122333456788899999852 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 357999999999999999999999999999999999999999999999854 689999999986 5677899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 6 789988875
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=322.21 Aligned_cols=219 Identities=23% Similarity=0.289 Sum_probs=177.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---ceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~---~~~~G~i~~~g 753 (1275)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 589999998874 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000808 754 YPKKQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1275)
Q Consensus 754 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 829 (1275)
.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++.++.+.++++.+++.+..+.... .....
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87542 134567899999998887 899999987643221 12333444556788999998653221111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999975 56788999999996 799
Q ss_pred EEECCC
Q 000808 910 IYVGPL 915 (1275)
Q Consensus 910 ~~~g~~ 915 (1275)
+..|++
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999986
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=314.23 Aligned_cols=192 Identities=27% Similarity=0.357 Sum_probs=159.1
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 780 (1275)
+++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 34679999999999999999999999999999999999865 358999999976421 1112234567999
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000808 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1275)
Q Consensus 781 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgL 860 (1275)
+||+.+..... ..+..+.+++++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99998765432 1223344556788999999988777765 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 861 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 861 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|.+ |+++..|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999975 56678999999985 7887655
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=319.98 Aligned_cols=215 Identities=25% Similarity=0.269 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 488999998763 245999999999999999999999999999999999964311 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. ....+.++.+.++++.+++.+ ..+..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87642 2235678999999988874 999999887543311 122334456788888888753 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 689999999975 4667899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 6 789998886
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=322.39 Aligned_cols=225 Identities=25% Similarity=0.326 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+.... ..+ ...++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67889988774100 000 0013569999999999999999999999999999999999765 35899999998754
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000808 758 QE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1275)
Q Consensus 758 ~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 828 (1275)
.. ..++.++|++|++ .+.+..|+.|++.+..... ......+..++++++++.+|+. +..+..+ .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 21 2356799999997 3567789999987653211 1123344455788999999996 4555554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.+|++++|.+ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999998765 899999999975 56678999999985 7
Q ss_pred EEEEECCCCc
Q 000808 908 QEIYVGPLGR 917 (1275)
Q Consensus 908 ~~~~~g~~~~ 917 (1275)
++++.|+..+
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998743
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=319.02 Aligned_cols=219 Identities=19% Similarity=0.242 Sum_probs=174.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 478899998763 235999999999999999999999999999999999976531 2369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 828 (1275)
.+... ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+...... +....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87532 1345679999999988875 999999886543211 112233455777888888753211111 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|+++ .+.+.+|++++|.+ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999975 56678899999985 78
Q ss_pred EEEECCC
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9999986
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=323.06 Aligned_cols=213 Identities=23% Similarity=0.293 Sum_probs=173.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---ceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~---~~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999998873 23599999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++. |+.||+.+....+. ... ..+++++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999888875 99999987654331 112 23456888999999853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhe-e
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFL-M 903 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~-l 903 (1275)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+...+|++++ |
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 357999999999999999999999999999999999999999999999876 489999999975 56678999764 5
Q ss_pred ecCcEEEEECCC
Q 000808 904 KRGGQEIYVGPL 915 (1275)
Q Consensus 904 ~~gg~~~~~g~~ 915 (1275)
. +|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 4799998875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=352.75 Aligned_cols=220 Identities=23% Similarity=0.347 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++ ++.+|+|||+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788888763 24599999999999999999999999999999999997653224899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 000808 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lS 831 (1275)
.. ..++.++|++|++.+++.+||+||+.+........ ....++.+++++++++.+++.+.. +..+ +.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 31 12356899999998899999999998764332111 122334456788999999997654 3444 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||||+||+||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ .+.+.+|++++|++ |+++.
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999878999999999975 56778999999986 78999
Q ss_pred ECCCCc
Q 000808 912 VGPLGR 917 (1275)
Q Consensus 912 ~g~~~~ 917 (1275)
.|++.+
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=318.27 Aligned_cols=219 Identities=19% Similarity=0.229 Sum_probs=176.8
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--c-eEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~--~-~~~G~i~~~ 752 (1275)
..+..+++++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 4577777776652 34699999999999999999999999999999999997642 1 258999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 827 (1275)
|.+... ..+++.++|++|++.++ .+|+.||+.+....+. . ..+.++.++++++.+++.+..+...+ ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 13456789999998877 5999999988754331 1 12234568889999998643222221 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee---
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK--- 904 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~--- 904 (1275)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 5678899999996
Q ss_pred ----cCcEEEEECCC
Q 000808 905 ----RGGQEIYVGPL 915 (1275)
Q Consensus 905 ----~gg~~~~~g~~ 915 (1275)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 35899999986
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=352.76 Aligned_cols=212 Identities=21% Similarity=0.317 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++ ++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999998873 24599999999999999999999999999999999998653 489999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
... . .++.+||++|++.+++.+||+|++.+... . ..+.+++++++++.+|+.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-----~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-----K--RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-----c--chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 22458999999999999999999987531 1 1233456889999999988777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|++++|.+ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 46788999999986 789999
Q ss_pred CCCCc
Q 000808 913 GPLGR 917 (1275)
Q Consensus 913 g~~~~ 917 (1275)
|+.++
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98754
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=306.97 Aligned_cols=179 Identities=26% Similarity=0.330 Sum_probs=150.5
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-----ccccceEEEeccCCC-CC
Q 000808 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFTRISGYCEQNDI-HS 775 (1275)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 775 (1275)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3569999999999999999999999999999999999865 348999999987531 123557899999973 23
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000808 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855 (1275)
Q Consensus 776 ~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDE 855 (1275)
...|++||+.+..... ..+.++.+++++++++.+|+.+..++.+ ..||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3479999998865322 1233444566889999999988777765 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 000808 856 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1275)
Q Consensus 856 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1275)
||+|||+.++..+.+.|++++++|+|||+++|+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999998777999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=318.39 Aligned_cols=221 Identities=24% Similarity=0.287 Sum_probs=175.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999988763 2359999999999999999999999999999999999621114589999999876
Q ss_pred Ccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000808 757 KQE---TFTR-ISGYCEQNDIHSPFVTVYESLLYSAWLRLP----PEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1275)
Q Consensus 757 ~~~---~~~~-~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 827 (1275)
... ..++ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+++. +..+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998765432110 0112223345678899999996 34455442
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hhhhheeecC
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES-FDELFLMKRG 906 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~g 906 (1275)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|.+
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 249999999999999999999999999999999999999999999998777899999999975 34444 799999985
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 7999999874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=371.63 Aligned_cols=210 Identities=28% Similarity=0.391 Sum_probs=177.3
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++|+|+. +++++|+|+|++|+|||++||+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46999999999841 23469999999999999999999999999999999999876 348999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
++. ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+. .|+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 753 456788999999999886 59999998642 1 22 2346677887777643 35666644
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999876 589999999974 5678999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 660 -G~iv~~G~~~ 669 (686)
T TIGR03797 660 -GRVVQQGTYD 669 (686)
T ss_pred -CEEEEECCHH
Confidence 7999999863
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=365.55 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=108.6
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 000808 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS 849 (1275)
Q Consensus 774 ~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGerqrv~ia~~l~---~~p~ 849 (1275)
.+...||.|+|.++..-........++..+++ ++++.+||.+. .+..+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45568999999877542211112233444556 57889999875 56554 469999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee-----cCcEEEEECCCCc
Q 000808 850 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK-----RGGQEIYVGPLGR 917 (1275)
Q Consensus 850 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gg~~~~~g~~~~ 917 (1275)
+++|||||+|||+.+...+++.|+++.++|.|||+++|+++ .+ +.+|++++|. +||+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999975 34 8999999995 3589999998753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=318.50 Aligned_cols=215 Identities=25% Similarity=0.319 Sum_probs=173.2
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--Cc-eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 753 (1275)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999998773 2459999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87631 134567999999998887 6999999876543211 112223345677888887642 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 589999999985 5677899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|++
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 799998876
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=311.99 Aligned_cols=173 Identities=25% Similarity=0.297 Sum_probs=132.4
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000808 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLL 785 (1275)
Q Consensus 706 L~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~ 785 (1275)
|+==.+++..||+++++||||-||||+.++|+|..++ .+|+ .. .-.++|-||--.--...||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 3334567888999999999999999999999997653 2454 11 123677787644445689999875
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000808 786 YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865 (1275)
Q Consensus 786 ~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~ 865 (1275)
-...-+...+ -...++.+-|.|.+..+..+ .+|||||.|||+||.+|.+++++++||||++.||.+.+
T Consensus 424 ~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGSS-------YFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcccc-------hhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 4432221111 12357888899998888887 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheee
Q 000808 866 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 866 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
..+-+.||+.... ++|.+++-||.-. +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999998754 7899999999753 223456666654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=315.19 Aligned_cols=209 Identities=22% Similarity=0.363 Sum_probs=169.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+. ++++++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 588999998763 2469999999999999999999999999999999999765 3489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSg 832 (1275)
.. ..+++.++|++|++.+++ .|++||+.+....+. . . ..+++++++++.+++. ...++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~-~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN--Q-Q--PDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC--C-C--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 32 224567899999988887 499999987543321 1 1 1234577899999995 3555554 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ .+ +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999986 34 56999999964444454
Q ss_pred EC
Q 000808 912 VG 913 (1275)
Q Consensus 912 ~g 913 (1275)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 44
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=320.92 Aligned_cols=216 Identities=19% Similarity=0.235 Sum_probs=174.4
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 752 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~ 752 (1275)
.-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+.. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 4689999998873 235999999999999999999999999999999999974311 247999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000808 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVG 823 (1275)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 823 (1275)
|.+... ..+++.++|++|++.+++. |+.||+.+....+. .. ...++.+++.++.+++.. ..+..
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987532 2345678999999888874 99999987643321 11 122344667788888742 22333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 824 ~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
...||||||||++|||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999865 689999999986 577889999999
Q ss_pred e--------cCcEEEEECCCC
Q 000808 904 K--------RGGQEIYVGPLG 916 (1275)
Q Consensus 904 ~--------~gg~~~~~g~~~ 916 (1275)
+ +.|+++..|+++
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred ecccccccccCceEEEeCCHH
Confidence 7 258999999873
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=320.92 Aligned_cols=215 Identities=21% Similarity=0.224 Sum_probs=172.9
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-ceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 753 (1275)
-++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999998873 2359999999999999999999999999999999999753 1 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 824 (1275)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87632 134567999999998887 599999987653321 112222344567777777543 222333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 799999999975 4667899999998
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 6 789999876
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=365.81 Aligned_cols=214 Identities=29% Similarity=0.451 Sum_probs=177.9
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
...++|+|++|.++. ++++|+|+|++++|||++||+||||||||||++.|.|..++ .+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCE
Confidence 356999999999852 35799999999999999999999999999999999998763 5899999998
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccC
Q 000808 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-------NPLRQSLVGL 824 (1275)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 824 (1275)
+++. ..+++.++||+|++.+|. -|++||+.++. ++.++++ ++++++..++ .+-.|+.+|.
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge 461 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGE 461 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecC
Confidence 8754 456788999999999988 79999998763 1233333 3344443332 3346888883
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
++..||||||||++||||++++|+||+||||||+||+++...+++.++++. +++|+|+++|+++ ....+|+|++|+
T Consensus 462 -~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~ 537 (567)
T COG1132 462 -RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD 537 (567)
T ss_pred -CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE
Confidence 445899999999999999999999999999999999999999999999876 5789999999985 445699999999
Q ss_pred cCcEEEEECCCCc
Q 000808 905 RGGQEIYVGPLGR 917 (1275)
Q Consensus 905 ~gg~~~~~g~~~~ 917 (1275)
+ |+++..|+.++
T Consensus 538 ~-G~i~e~G~h~e 549 (567)
T COG1132 538 N-GRIVERGTHEE 549 (567)
T ss_pred C-CEEEEecCHHH
Confidence 6 78999998743
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=315.51 Aligned_cols=219 Identities=20% Similarity=0.258 Sum_probs=176.0
Q ss_pred cEEEEEeEEEEEeccch----hhh---ccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEE
Q 000808 676 HSLTFDEVTYSVDMPKE----MKL---QGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 748 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~ 748 (1275)
+.+.++|++..++.... .+. ......++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 46788888766654211 110 0112245679999999999999999999999999999999999865 34799
Q ss_pred EEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000808 749 ITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1275)
Q Consensus 749 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 828 (1275)
|.++|. +++++|...+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..+..+ +
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 999984 356677776778899999998754332 1233444556778889899987776654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999998777999999999975 56678999999985 78
Q ss_pred EEEECCCC
Q 000808 909 EIYVGPLG 916 (1275)
Q Consensus 909 ~~~~g~~~ 916 (1275)
++..|+.+
T Consensus 221 i~~~g~~~ 228 (264)
T PRK13546 221 LKDYGELD 228 (264)
T ss_pred EEEeCCHH
Confidence 99998864
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=350.12 Aligned_cols=217 Identities=27% Similarity=0.324 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 478899998873 2359999999999999999999999999999999999865 3479999999876
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ..+++.++|++|++.+++.+||.||+.+.............+.+++++++++.+|+.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 42 1234678999999989999999999987532111111223344567889999999987666655 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 56788999999986 788876
Q ss_pred CCC
Q 000808 913 GPL 915 (1275)
Q Consensus 913 g~~ 915 (1275)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=319.87 Aligned_cols=209 Identities=24% Similarity=0.396 Sum_probs=162.1
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 57788877631 12469999999999999999999999999999999999865 347999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 000808 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKM-----FIEEIMELV--ELNPLRQSLVGLPGES 828 (1275)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~ 828 (1275)
..+++.++|++|++.+++ .||.||+.+... ........+ ..++.++.+ ++....+.. ..
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 234567899999987765 699999976421 111111110 112333333 333333332 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|+++ ++ ..+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 899999999986 34 56999999996 79
Q ss_pred EEEECCC
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9999986
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=308.00 Aligned_cols=192 Identities=23% Similarity=0.332 Sum_probs=168.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+..|||-||||||||+++|.++.+|+ .|+|+++|.++..... ++.+++|+|+-.++|..||.||..|+.+
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 47899999999999999999999998 9999999999865432 3679999999999999999999999998
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
+++.+. ++++.+..+.|+..||+...+ +++++|||||||||
T Consensus 133 v~Gv~~----------------------------------~er~~~a~~~l~~VgL~~~~~-----~yp~eLSGGMqQRV 173 (386)
T COG4175 133 VQGVPK----------------------------------AEREERALEALELVGLEGYAD-----KYPNELSGGMQQRV 173 (386)
T ss_pred ecCCCH----------------------------------HHHHHHHHHHHHHcCchhhhh-----cCcccccchHHHHH
Confidence 876431 123334667899999998775 45678999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
.|||||+.+|+|||+|||+|+|||--+.+..+.|.++-+..+ +||+.++|+.+|++++.|||.+|++|+|+..|+++|+
T Consensus 174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~-KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999988766654 5566689999999999999999999999999999999
Q ss_pred HH
Q 000808 234 LD 235 (1275)
Q Consensus 234 ~~ 235 (1275)
..
T Consensus 253 l~ 254 (386)
T COG4175 253 LL 254 (386)
T ss_pred Hc
Confidence 74
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=299.91 Aligned_cols=168 Identities=28% Similarity=0.423 Sum_probs=147.9
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++ .+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 5678877663 23599999999999999999999999999999999998653 48999999987543
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
..+++.++|++|++.+++.+|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567899999998888899999873 8999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|+++ ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999975 566789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=319.77 Aligned_cols=214 Identities=20% Similarity=0.258 Sum_probs=172.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--c-eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 753 (1275)
.++++|++++++ ++++|+|+|++|++||+++|+||||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999998773 23599999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 824 (1275)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. .. ...+++++++++.+++.+ ..+..
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 148 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS--- 148 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC---
Confidence 87531 233567899999988887 499999987653321 11 123345677788888743 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 149 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 149 --GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 357999999999999999999999999999999999999999999999875 589999999986 5788999999998
Q ss_pred c--------CcEEEEECCC
Q 000808 905 R--------GGQEIYVGPL 915 (1275)
Q Consensus 905 ~--------gg~~~~~g~~ 915 (1275)
+ .|+++..|++
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 4799999986
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=317.25 Aligned_cols=215 Identities=26% Similarity=0.291 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc-
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 755 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 755 (1275)
-++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 378899988763 23589999999999999999999999999999999998653 47999999876
Q ss_pred ----CCc---c----cccceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000808 756 ----KKQ---E----TFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSL 821 (1275)
Q Consensus 756 ----~~~---~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 821 (1275)
... . ..++.++|++|++. +.+.+|+.|++.+..... . .....+.++.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12345899999974 345679999986542211 1 0111233466789999999963 55555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhh
Q 000808 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEL 900 (1275)
Q Consensus 822 ~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 900 (1275)
+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+...+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4 479999999999999999999999999999999999999999999998654 899999999975 566789999
Q ss_pred heeecCcEEEEECCC
Q 000808 901 FLMKRGGQEIYVGPL 915 (1275)
Q Consensus 901 ~~l~~gg~~~~~g~~ 915 (1275)
++|++ |+++..|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 799999875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=315.54 Aligned_cols=216 Identities=23% Similarity=0.301 Sum_probs=174.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--ce--EEEEEEEc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNITIS 752 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~--~~--~~G~i~~~ 752 (1275)
.+.++++++++. ++.+|+|+||++++||+++|+||||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 488999988763 34699999999999999999999999999999999997542 21 23666666
Q ss_pred CccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 000808 753 GYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGLP 825 (1275)
Q Consensus 753 g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 825 (1275)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.+++++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665431 2345678999999999999999999988653321 1123344566889999999964 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
...||+|||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+...+|++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 699999999975 46688999999985
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 799999976
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=308.51 Aligned_cols=196 Identities=28% Similarity=0.384 Sum_probs=162.8
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67888887763 2359999999999999999999999999999999999865 34799999998753
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
....++.++|++|++.+++.+|+.||+.+..... ... ++.++++++.+|+.+..+..+ +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 2224567899999988888999999998754332 111 234788999999987666655 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
++|||+|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++ .. |+++.+
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~ 198 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDL 198 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEee
Confidence 99999999999999999999999999999999999998777999999999975 33 33 777655
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=323.30 Aligned_cols=227 Identities=29% Similarity=0.430 Sum_probs=187.8
Q ss_pred CCCcccCCCCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceE
Q 000808 666 KRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 745 (1275)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~ 745 (1275)
...+.+|.....++++++++..+ ..++++|+|+||.+++||-+||+||||||||||.|+|.|--. +.
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~ 389 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PT 389 (580)
T ss_pred cCCCCCCCCCceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cC
Confidence 34567777778999999998431 235789999999999999999999999999999999999765 35
Q ss_pred EEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHcCCCcc
Q 000808 746 TGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQK-----MFIEEIMELVELNPL 817 (1275)
Q Consensus 746 ~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~l~l~~~ 817 (1275)
+|.|.+||.+.++ +.+-+.+||.||+-.+|+ -||.||+. |...+.+.+..- ..+.|++ +.+.+-
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~G 461 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQG 461 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCC
Confidence 8999999988754 456688999999999887 59999994 333333333211 1233332 456667
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh
Q 000808 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 897 (1275)
Q Consensus 818 ~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 897 (1275)
.||.+|..+ ..||||||||+++||||..+|.+++||||-|+||.+....+.+.|.+..++|+|+|+++|+|+ +....
T Consensus 462 YdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~ 538 (580)
T COG4618 462 YDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASV 538 (580)
T ss_pred ccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhc
Confidence 789998654 589999999999999999999999999999999999999999999999989999999999986 67889
Q ss_pred hhhheeecCcEEEEECCCCc
Q 000808 898 DELFLMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 898 d~~~~l~~gg~~~~~g~~~~ 917 (1275)
|+|++|++ |++-.||+.++
T Consensus 539 Dkilvl~~-G~~~~FG~r~e 557 (580)
T COG4618 539 DKILVLQD-GRIAAFGPREE 557 (580)
T ss_pred ceeeeecC-ChHHhcCCHHH
Confidence 99999985 89999999853
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=350.00 Aligned_cols=207 Identities=25% Similarity=0.322 Sum_probs=173.9
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCCCCCCCC
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQNDIHSPFV 778 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~l 778 (1275)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4699999999999999999999999999999999998653 489999999876421 2345689999999888999
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000808 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858 (1275)
Q Consensus 779 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPts 858 (1275)
||+||+.+..........+.++..++++++++.+++.+..+..+ ..|||||||||+|||+|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123334567889999999987777665 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCcc
Q 000808 859 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRH 918 (1275)
Q Consensus 859 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~ 918 (1275)
|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |+++..|++.+.
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhhC
Confidence 99999999999999999877999999999985 56778999999996 799999987543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=319.04 Aligned_cols=205 Identities=20% Similarity=0.219 Sum_probs=150.8
Q ss_pred CCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcC
Q 000808 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1275)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g 753 (1275)
.|..+.+.++++.++.. .-+++.+++..++.-+..+++|+||+||||++|++.|... +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 35578899998877521 1168899999999999999999999999999999998654 2356655543
Q ss_pred ccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 754 YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 754 ~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
+.+++|-.|...-+-.+.|.+ +.+-...+ +.... +.+++-+..+||..-.- .....+||||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~----ee~r~hl~~~Gl~g~la----~~si~~LSGG 486 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF--PGKTE----EEIRRHLGSFGLSGELA----LQSIASLSGG 486 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHH-HHHHHHhC--CCCCH----HHHHHHHHhcCCCchhh----hccccccCCc
Confidence 456789988765444444433 22333333 12222 23567788899964321 1113579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||-||++|.....+|.+|+|||||+.||-++-..+.+.|+.. +..||++||+.+ -+-..|+.+.+..+|.-.-+.|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999876 347999999964 3566889999998754333444
Q ss_pred C
Q 000808 914 P 914 (1275)
Q Consensus 914 ~ 914 (1275)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 4
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=359.69 Aligned_cols=211 Identities=22% Similarity=0.359 Sum_probs=178.4
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++ +++++|+|+|++++|||++||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYR------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeC------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 4699999999984 123599999999999999999999999999999999998763 47999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
... ..+++.++||+|++.+++. |++||+.++. +.+ +++++++++.+|+.+. .|+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4567889999999999885 9999998752 122 2346778888887643 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|+|++||||||+||+++++.+.+.|+++.+ ++|+|+++|+++ ....+|++++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999998764 699999999974 5678999999985
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 550 -G~i~~~G~~~ 559 (592)
T PRK10790 550 -GQAVEQGTHQ 559 (592)
T ss_pred -CEEEEEcCHH
Confidence 8999999863
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=332.97 Aligned_cols=191 Identities=26% Similarity=0.351 Sum_probs=161.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++.+.. .++.++||+|++.++|.+||+||+.|+.+.++..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP- 107 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 999999999886533 3478999999999999999999999976532110
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
..+....++++++.+||++..+ +.+++|||||||||+|||||
T Consensus 108 ---------------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 108 ---------------------------------KAEIEERVAEAARILELEPLLD-----RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0011224567899999976554 45668999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++|+||||||+||+.++.++.+.++++.+.. +++++.++|+..++..++|+|++|++|+++..|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999876533 456666899999999999999999999999999998874
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=361.65 Aligned_cols=214 Identities=23% Similarity=0.307 Sum_probs=178.0
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++|+++. +++++|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 46999999998841 235699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 825 (1275)
.+. ..+++.++|++|++.+++ -|++||+.++. +...++ ++++++++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 653 346778999999999886 69999997641 212232 34566777776543 246667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
...||||||||++|||||+++|+||+||||||+||++++..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4799999999974 5788999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 554 -g~i~e~g~~~ 563 (582)
T PRK11176 554 -GEIVERGTHA 563 (582)
T ss_pred -CEEEEeCCHH
Confidence 7999999863
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=315.21 Aligned_cols=219 Identities=26% Similarity=0.303 Sum_probs=170.4
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56888888763 23599999999999999999999999999999999997421135899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHh-ccC--CCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000808 758 QE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAW-LRL--PPE-VDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1275)
Q Consensus 758 ~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-l~~--~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 828 (1275)
.. . .++.++|++|++.+++.+|+.+++.+... ++. ... ......+++++++++.+++. +..+..+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 21 1 23468999999988888887777653211 110 000 11222345678889999984 34444431 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hhhhheeecCc
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES-FDELFLMKRGG 907 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~gg 907 (1275)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999998777899999999975 34444 799999985 7
Q ss_pred EEEEECCC
Q 000808 908 QEIYVGPL 915 (1275)
Q Consensus 908 ~~~~~g~~ 915 (1275)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 89999986
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=312.95 Aligned_cols=210 Identities=26% Similarity=0.397 Sum_probs=167.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEh
Confidence 3678888877631 12459999999999999999999999999999999999865 3479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCC
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG------LPGE 827 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~ 827 (1275)
.. ...++.++|++|++.+++ .|+.|++.+... ... ++.+.++++.+++.+..+.... ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 223457899999998876 699999876321 111 2235678888888776655331 1123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|+++ . .+.+|++++|.+ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999998764 89999999986 3 478999999986 6
Q ss_pred EEEEEC
Q 000808 908 QEIYVG 913 (1275)
Q Consensus 908 ~~~~~g 913 (1275)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 777654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=328.96 Aligned_cols=224 Identities=22% Similarity=0.303 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc--eEEEEEEEcCc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGY 754 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 754 (1275)
-++++|++.++... .+...+++||||++++||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 58899998877532 12346999999999999999999999999999999999975533 35799999998
Q ss_pred cCCc-------ccccceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000808 755 PKKQ-------ETFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825 (1275)
Q Consensus 755 ~~~~-------~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 825 (1275)
+... ..+.+.++|++|++. +.|-+|+.+.+.=...++.+ .+.++..+++.++++.+||.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6422 123467999999975 55778998888765555542 2367777889999999999876654 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.+.+|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.+.+|++++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 3568999999999999999999999999999999999999999999999975 4999999999986 4778999999999
Q ss_pred cCcEEEEECCCC
Q 000808 905 RGGQEIYVGPLG 916 (1275)
Q Consensus 905 ~gg~~~~~g~~~ 916 (1275)
+ |+++..|+++
T Consensus 230 ~-G~iVE~G~~~ 240 (539)
T COG1123 230 K-GEIVETGPTE 240 (539)
T ss_pred C-CEEEEecCHH
Confidence 6 8999999974
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=315.86 Aligned_cols=198 Identities=24% Similarity=0.364 Sum_probs=168.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHH
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVY 781 (1275)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~ 781 (1275)
+|+|+|+++++||+++|+||||||||||+++|+|..+ . +|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 2 7999999987642 12345689999998888889999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000808 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVA-------NPSIIFMD 854 (1275)
Q Consensus 782 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~-------~p~illlD 854 (1275)
||+.+.... .....+..++++++++.+++.+..++.+ +.||||||||++||++|+. +|++++||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333556889999999987766665 4699999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 855 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |+++..|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999998777899999999975 57789999999986 7999998763
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=308.89 Aligned_cols=191 Identities=26% Similarity=0.368 Sum_probs=163.0
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCC----CccccceEEEecccc-ccCCCCCHHHHHHHHHhccC
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD----EFVPQRTAAYISQHD-VHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 2 ~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~----~~~~~~~~~yv~Q~~-~~~~~lTv~e~l~f~~~~~~ 76 (1275)
++|+||||||||||+++|+|.+.|. +|.|.++|.+.. ....++.+|||+|++ ..+...||.|.+.|+.+..+
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 7899999999999999999999997 899999999865 234568899999984 45667799999999887654
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
... ++...++++.++.+||.+..+ +.+..|||||||||+||
T Consensus 110 ~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~-----r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 110 LPR----------------------------------EEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIA 150 (235)
T ss_pred CCH----------------------------------HHHHHHHHHHHHHcCchhhcc-----CCccccCCcceeeHHhh
Confidence 321 112345778899999987754 55678999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
.+|+.+|++++|||||||||+..+.++++.++++... ++.++++++|+.+.+..++|++++|++|+++++|++.++.+
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999999999999999999999998654 35566678999999999999999999999999999877654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=330.87 Aligned_cols=191 Identities=24% Similarity=0.357 Sum_probs=162.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.++||+|+..+||.+||.||+.|+.+.++..
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~- 109 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP- 109 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC-
Confidence 47999999999999999999999987 9999999998865433 478999999999999999999999986543211
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
..+....++++++.+||.+.. ++.++.|||||||||+|||||
T Consensus 110 ---------------------------------~~~~~~~v~~~l~~~gl~~~~-----~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 110 ---------------------------------KEERKQRVKEALELVDLAGFE-----DRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHH
Confidence 001122456788899997654 455678999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+.+++..++|+|++|++|+++..|+++++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876543 455666899999999999999999999999999998874
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=314.79 Aligned_cols=219 Identities=22% Similarity=0.274 Sum_probs=174.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-ceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 753 (1275)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 377889988763 2459999999999999999999999999999999999643 1 12579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 828 (1275)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..++++.++++.+++.+...... +....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 87542 1235679999999988875 99999987643221 1123334566788899998854211111 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999864 799999999986 57788899999985 79
Q ss_pred EEEECCC
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
+++.|++
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9999986
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=370.93 Aligned_cols=211 Identities=27% Similarity=0.389 Sum_probs=176.1
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++|+|+. .++++|+|+|++|+|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46999999999852 23469999999999999999999999999999999999876 348999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
.+. ..+++.+|||+|++.+++ .|++||+.++. + +.++ +.+.++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 643 356788999999998885 59999997531 1 2222 335667777776543 35566643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|+||+||||||+||+.++..+.+.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999986 4899999999975 5677999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 687 -G~i~~~G~~~ 696 (710)
T TIGR03796 687 -GKVVQRGTHE 696 (710)
T ss_pred -CEEEEecCHH
Confidence 7999999863
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=358.20 Aligned_cols=213 Identities=27% Similarity=0.421 Sum_probs=178.8
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++. +++++|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 47999999999841 12469999999999999999999999999999999999876 348999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc------cccccCCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR------QSLVGLPG 826 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~------~~~~~~~~ 826 (1275)
.+. ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 653 356778999999998886 59999997752 1 222 34577888888887653 4555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
...||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999875 4899999999986 4567999999986
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 549 G~i~~~g~~~ 558 (574)
T PRK11160 549 GQIIEQGTHQ 558 (574)
T ss_pred CeEEEeCCHH
Confidence 7999999863
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=329.93 Aligned_cols=192 Identities=20% Similarity=0.310 Sum_probs=162.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.|+.+
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998865432 5689999999999999999999999765
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
+.+.. ..+....+.++++.+||++..+ +.+..|||||||||
T Consensus 98 ~~~~~----------------------------------~~~~~~~~~~~l~~vgL~~~~~-----~~p~~LSGGq~QRV 138 (363)
T TIGR01186 98 LLGWP----------------------------------EQERKEKALELLKLVGLEEYEH-----RYPDELSGGMQQRV 138 (363)
T ss_pred HcCCC----------------------------------HHHHHHHHHHHHHhcCCchhhh-----CChhhCCHHHHHHH
Confidence 43210 0011223567889999976544 45668999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|||||+.+|+|+||||||+|||+.++.++.+.++++.+.. +.+|+.++|+.+++..++|+|++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~-~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL-QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999875433 45666689999999999999999999999999999887
Q ss_pred HH
Q 000808 234 LD 235 (1275)
Q Consensus 234 ~~ 235 (1275)
..
T Consensus 218 ~~ 219 (363)
T TIGR01186 218 LR 219 (363)
T ss_pred Hh
Confidence 53
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=317.45 Aligned_cols=209 Identities=26% Similarity=0.351 Sum_probs=163.9
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++. .++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 57788777631 11359999999999999999999999999999999999865 348999999986532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 000808 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKM-----FIEEIMELV--ELNPLRQSLVGLPGES 828 (1275)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~ 828 (1275)
...++.++|++|++.+++ .|++||+.+.... .......+ .+++.++.+ ++.+..+.. ..
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 233567899999988876 6999999764321 11111111 234445544 454444433 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++ ..+|++++|.+ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 7999999999999999999999999999999999999999999999864 899999999986 34 45999999996 68
Q ss_pred EEEECCC
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
++..|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 8888875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=331.20 Aligned_cols=192 Identities=21% Similarity=0.323 Sum_probs=162.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCcee--EEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFS--GRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~--G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++|+|||||||||||++|+|..+|+ + |+|.++|+++..... ++.++||+|+..+++.+||+||+.|+.+.++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 7 999999998764332 46799999999999999999999998653321
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
. ..+.+..++++++.+||++..+ +.+++|||||||||+|||
T Consensus 110 ~----------------------------------~~~~~~~v~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 110 P----------------------------------KADIAERVADALKLVGLGDAAA-----HLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred C----------------------------------HHHHHHHHHHHHHhcCCCchhh-----CChhhCCHHHHHHHHHHH
Confidence 0 0011224567899999986654 456689999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+.+++..++|+|++|++|+++..|+++++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998765432556677899999999999999999999999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=330.31 Aligned_cols=192 Identities=24% Similarity=0.371 Sum_probs=162.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.++||+|+..+||.+||+||+.|+.+.++..
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG- 107 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999987 999999999886533 3478999999999999999999999976532110
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
..+.+..++++++.+||++..+ +.+++|||||||||+|||||
T Consensus 108 ---------------------------------~~~~~~~~~~~l~~l~L~~~~~-----~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 108 ---------------------------------RAEVAERVAELLDLVGLPGSER-----KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCCchhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0011224677899999987654 45678999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
+.+|+++|||||||+||+.++.++.+.|+++.+.. +.+++.++|+.+++..++|+|++|++|++++.|+++++.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999876543 4556668899999999999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=327.51 Aligned_cols=191 Identities=22% Similarity=0.311 Sum_probs=160.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... .++.++|++|+..+++..||+||+.++...
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999999886532 246799999999999999999999987643
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. ..+....+.++++.+||++..| +.+..|||||||||+
T Consensus 110 ~~~~----------------------------------~~~~~~~v~e~l~~vgL~~~~~-----~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 110 DNTP----------------------------------KDEIKRKVTELLALVGLGDKHD-----SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHH
Confidence 2210 0011123567889999987655 456689999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|++|+|||||||||+.++.++++.|+++.+.. +.+|+.++|..+.+.++||+|++|++|++++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999986543 455666899999999999999999999999999988874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=302.99 Aligned_cols=194 Identities=24% Similarity=0.312 Sum_probs=162.1
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
+.++|+++++. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 56788887763 2459999999999999999999999999999999999865 35899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
. ..+++.++|++|+..+++.+||+||+.+..... .. +..++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 234567999999988888999999998764211 11 235788999999987666654 36999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhh
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELF 901 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~ 901 (1275)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ....+|...
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999975 345566544
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=289.59 Aligned_cols=193 Identities=21% Similarity=0.343 Sum_probs=165.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++++|||||||||.+.++.|+..|+ +|+|.++|.+++.... +..+||+||++..|..+||+|||.-..+.+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 47899999999999999999999998 9999999999987654 3468999999999999999999987665432
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
... ...+.+...+.+|+.|++.+..+. ....||||||||+.||
T Consensus 109 ~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr~~-----~a~sLSGGERRR~EIA 151 (243)
T COG1137 109 KDL--------------------------------KKAERKEELDALLEEFHITHLRDS-----KAYSLSGGERRRVEIA 151 (243)
T ss_pred cch--------------------------------hHHHHHHHHHHHHHHhchHHHhcC-----cccccccchHHHHHHH
Confidence 100 011223346789999999877764 4557999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|||+.+|++++||||++|+||.+..+|.+.++.+.. ++.-|+++.|+..|...+|||..++.+|++..+|+++++.+
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999998764 36667778999999999999999999999999999999864
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=300.05 Aligned_cols=170 Identities=29% Similarity=0.422 Sum_probs=148.5
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5678877663 2459999999999999999999999999999999999865 348999999987542
Q ss_pred -----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 759 -----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 759 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
...++.++|++|++.+++.+|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999999888889999987531 8999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999998876 899999999975 466689999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=317.63 Aligned_cols=210 Identities=29% Similarity=0.427 Sum_probs=161.0
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.+.. .+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 56788776631 012469999999999999999999999999999999999865 347999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCCC
Q 000808 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS-------LVGLPGES 828 (1275)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~~ 828 (1275)
...++.++|++|++.+++ .|++|++.+.... ...++ .++.++..++.+..+. ... ....
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEE----VEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHH----HHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 223456999999988776 6999999764211 11111 2223333333221111 111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++ +.+|++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999986 7899999999986 34 47999999986 78
Q ss_pred EEEECCC
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 9998875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=314.55 Aligned_cols=217 Identities=22% Similarity=0.246 Sum_probs=174.7
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--c-eEEEEEEE
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITI 751 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~--~-~~~G~i~~ 751 (1275)
+..++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ + +.+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 34689999998873 23599999999999999999999999999999999997542 1 25899999
Q ss_pred cCccCC---c----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccc
Q 000808 752 SGYPKK---Q----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQS 820 (1275)
Q Consensus 752 ~g~~~~---~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~ 820 (1275)
+|.+.. . ...++.++|++|++.+++. |++||+.+...... . ......+++++++++.+++.+ ..+.
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG-V-KRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC-C-ChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 987642 1 1245678999999988885 99999987643221 1 111223456778888888742 2233
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhh
Q 000808 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900 (1275)
Q Consensus 821 ~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 900 (1275)
. ...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 3 347999999999999999999999999999999999999999999999865 689999999975 567889999
Q ss_pred heeecCcEEEEECCC
Q 000808 901 FLMKRGGQEIYVGPL 915 (1275)
Q Consensus 901 ~~l~~gg~~~~~g~~ 915 (1275)
++|++ |+++..|+.
T Consensus 231 ~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 231 AYMYM-GELIEFGAT 244 (265)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 799999876
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=308.87 Aligned_cols=210 Identities=22% Similarity=0.272 Sum_probs=165.5
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcC--c-
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--Y- 754 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g--~- 754 (1275)
++++|+++.++.... ...++.+|+|+|++|++||+++|+||||||||||+++|+|..++ ..|+|.++| .
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 567888887742100 00124699999999999999999999999999999999998653 479999984 2
Q ss_pred -cCCc---cc----ccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCC
Q 000808 755 -PKKQ---ET----FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLP 825 (1275)
Q Consensus 755 -~~~~---~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~ 825 (1275)
+... .. .++.++|++|++.+++.+|++|++.+..... ....+...+++.++++.+|+.+. .+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 147 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP--- 147 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc---
Confidence 3211 11 1346899999999999999999998764322 12233345567889999999753 34443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+...+|+++.+.
T Consensus 148 --~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 --ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 579999999999999999999999999999999999999999999998777999999999954 3556889988763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=271.28 Aligned_cols=214 Identities=23% Similarity=0.334 Sum_probs=178.6
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
+..+++++.|. ..++|.||+++.+.||.+.++||||||||||++.|.-... +.+|+..|.|..-+
T Consensus 3 irv~~in~~yg-------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd 67 (242)
T COG4161 3 IQLNGINCFYG-------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred eEEcccccccc-------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccc
Confidence 55667766653 4569999999999999999999999999999999986433 34677777665321
Q ss_pred -------c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000808 758 -------Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1275)
Q Consensus 758 -------~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 828 (1275)
+ ..+|+.+|.|+|+-.++|.+||.|||.-+ .++. ...++++.+.+..++++.+.|.+.+|... -
T Consensus 68 ~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-p~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----l 140 (242)
T COG4161 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----L 140 (242)
T ss_pred cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-hHHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----e
Confidence 1 23567899999999999999999998543 2221 24566777788899999999999998874 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.|||||+|||+|||||+.+|++|+.||||++|||+-..++++++++++..|.|-++++|..+. .-+.+.+++.|.+ |+
T Consensus 141 hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g~ 218 (242)
T COG4161 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GH 218 (242)
T ss_pred ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-Ce
Confidence 699999999999999999999999999999999999999999999999999999999998652 3457789999986 79
Q ss_pred EEEECCC
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
++..|+.
T Consensus 219 ive~g~a 225 (242)
T COG4161 219 IVEQGDA 225 (242)
T ss_pred eEeecch
Confidence 9999986
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=325.58 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=161.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++.+++.+||+||+.|.+++.+..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999987543 23567999999999999999999999866543210
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+....++.+++.++|.+..++.+ ++|||||||||+||+|
T Consensus 112 ~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 152 (306)
T PRK13537 112 A----------------------------------AAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLARA 152 (306)
T ss_pred H----------------------------------HHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHHHH
Confidence 0 001123466788999987776655 4799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|+++|++++|||||+|||+.++.++++.++++.+ .+++|+.++|..+++.++||+|++|++|++++.|+++++.+
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998753 35667778999999999999999999999999999988764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=281.59 Aligned_cols=184 Identities=23% Similarity=0.351 Sum_probs=159.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
++-|+||||||||||||+|.+...|+ .|+|+++|.++.... .||+||+|+||.-+++..||.||+.|+.+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 46799999999999999999999998 999999999986543 368999999999999999999999998876
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. ..+.+..+.+.|+..||.+..+. .+..|||||||||+
T Consensus 107 ~G~~----------------------------------~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRva 147 (223)
T COG2884 107 IGKP----------------------------------PREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVA 147 (223)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHH
Confidence 5521 11223356778999999887753 45689999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
||||++.+|++|+-||||.+|||..+.+|++.+.++.+ .+|+|++.+|+..-+..+-.|++.|++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999999865 3677887899998888899999999999998654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=366.33 Aligned_cols=213 Identities=27% Similarity=0.427 Sum_probs=177.9
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++|+. +++++|+|+|++|+|||++||+|+||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999999841 23469999999999999999999999999999999999876 348999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
.+. ..+++.++||+|++.+++ .|++||+.++. + +.+. +++.++++..++.+. .|+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCCH----HHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 653 456788999999998887 59999997641 1 2232 335666776666442 35666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|++++||||||+||++++..+++.|+++.+ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 357999999999999999999999999999999999999999999998764 799999999985 5688999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 675 -G~i~e~G~~~ 684 (694)
T TIGR03375 675 -GRIVADGPKD 684 (694)
T ss_pred -CEEEeeCCHH
Confidence 7999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=295.67 Aligned_cols=190 Identities=25% Similarity=0.284 Sum_probs=161.6
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccc--cCCCCCHHHHHHHHHhcc
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDV--HIGEMTVRETLAFSARCQ 75 (1275)
Q Consensus 2 ~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~~~ 75 (1275)
.+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+.+|+||+. +-|..||++.|.-+.+.+
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 6899999999999999999999997 999999998775532 4578999999854 568889999998776543
Q ss_pred CCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhH
Q 000808 76 GVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1275)
+.++ .+..+.++++.+||++.. -++++..|||||||||+|
T Consensus 113 ~~~~------------------------------------~~~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 113 GLSK------------------------------------SQQRIAELLDQVGLPPSF----LDRRPHELSGGQRQRIAI 152 (252)
T ss_pred CccH------------------------------------HHHHHHHHHHHcCCCHHH----HhcCchhcChhHHHHHHH
Confidence 3211 011256689999998654 357788999999999999
Q ss_pred HHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
||||..+|++|+||||||+||+..+.+|++.|.++.+. .+.+.+.++|+..-+.++||||++|++|++++.++.+++.+
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998664 46677779999999999999999999999999999998864
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=278.87 Aligned_cols=205 Identities=22% Similarity=0.329 Sum_probs=173.0
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc----------------ccccce
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----------------ETFTRI 764 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----------------~~~~~~ 764 (1275)
+...+|++||++.++|+.+.|+|.|||||||+|+||.-... +..|.|.+||..+.. ...|..
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 44579999999999999999999999999999999987655 458999999975421 112345
Q ss_pred EEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000808 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVEL 844 (1275)
Q Consensus 765 ~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l 844 (1275)
.|+|+|...++.++||.||+.-+- ... ...++.+..++.+..|+.+|+.+.++.+. ..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaP-vhV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAP-VHV-LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcc-hHh-hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHHH
Confidence 799999999999999999986432 111 13456667778899999999999888764 46999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 845 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 845 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
+.+|++++.|||||+|||+-.-++.+.+++++++|+|++++||.... .-+...+++.|.+ |.+-..||+.
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 99999999999999999999999999999999999999999998652 3456789999986 7999999983
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=302.35 Aligned_cols=185 Identities=25% Similarity=0.326 Sum_probs=156.6
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 5677877653 2469999999999999999999999999999999999865 347999999987532
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
..+++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2234678999999888888999999987653321 1 1 235778999999988777665 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1275)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999999999999999999999999999998777899999999975
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=326.03 Aligned_cols=229 Identities=26% Similarity=0.385 Sum_probs=193.5
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
.-++++|+++++. ..++|+||||++++||++||+|.||||||||+|+|+|... +.+|+|.+||.+
T Consensus 7 ~ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~ 71 (500)
T COG1129 7 PLLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKP 71 (500)
T ss_pred ceeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEE
Confidence 3588999988774 3569999999999999999999999999999999999766 458999999997
Q ss_pred CCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000808 756 KKQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1275)
Q Consensus 756 ~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 830 (1275)
... .....-++.|.|+..+.|++||.||+.++...+.+ .-.+.....++..++++.+++....++.++ .|
T Consensus 72 ~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~L 146 (500)
T COG1129 72 VAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DL 146 (500)
T ss_pred ccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hC
Confidence 642 22345689999999999999999999776544331 234566777788999999999644777775 69
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 831 SgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
|.||||.|.|||||..+++||+||||||.|+......+.+.++++.++|.+||++||.++ ++++.+|++.+|.+ |+.+
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v 224 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVV 224 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEe
Confidence 999999999999999999999999999999999999999999999999999999999996 89999999999997 7889
Q ss_pred EECCC-Cccc-hHHHHHH
Q 000808 911 YVGPL-GRHS-CHLIRYF 926 (1275)
Q Consensus 911 ~~g~~-~~~~-~~~~~~f 926 (1275)
-.++. ++.. ++++...
T Consensus 225 ~~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 225 GTRPTAAETSEDELVRLM 242 (500)
T ss_pred eecccccCCCHHHHHHHh
Confidence 88883 4332 3444443
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=314.01 Aligned_cols=211 Identities=25% Similarity=0.389 Sum_probs=164.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++++. +.+.+++|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 478899988763 12359999999999999999999999999999999999865 3479999999865
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-c-----CCCC
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV-G-----LPGE 827 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~-----~~~~ 827 (1275)
.. ..+++.++|++|++.+++. |++||+.+... .... ..+++.++.+++.+..+... | ....
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345668999999887775 99999976421 1111 12344444444433322211 0 1123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
..||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ ..+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 5799999999999999999999999999999999999999999999985 4899999999985 34 56999999986 7
Q ss_pred EEEEECCC
Q 000808 908 QEIYVGPL 915 (1275)
Q Consensus 908 ~~~~~g~~ 915 (1275)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=283.95 Aligned_cols=229 Identities=25% Similarity=0.299 Sum_probs=192.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++.+|+++++. +++.||++||++|++||+.+||||||||||||.++|+|.+....++|+|.++|.++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478899998874 22579999999999999999999999999999999999987777899999999987
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCC
Q 000808 757 KQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLS 831 (1275)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lS 831 (1275)
.. ++.+.-+...+|.|.-+|..|+.+.|..+...+........+..+.+++.++.+++.+ ..++.+. .|+|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 53 2345557788999999999999999987765443221112344567888999999987 5566664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh--hhhheeecCcEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF--DELFLMKRGGQE 909 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~~~~l~~gg~~ 909 (1275)
||||||..|+.+++.+|++.+||||-||||..+-+.+-+.++++.+.|++++++||.. .+.++. |++.+|.+ |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998999999999985 577776 99999996 799
Q ss_pred EEECCCCccchHHHHHHhcC
Q 000808 910 IYVGPLGRHSCHLIRYFEGI 929 (1275)
Q Consensus 910 ~~~g~~~~~~~~~~~~f~~~ 929 (1275)
+..|.+ ++..+.+.-
T Consensus 224 v~sG~~-----el~~~le~~ 238 (251)
T COG0396 224 VKSGDP-----ELAEELEEK 238 (251)
T ss_pred EecCCH-----HHHHHHHHh
Confidence 999987 456666654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=344.26 Aligned_cols=123 Identities=23% Similarity=0.283 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCcEEEE
Q 000808 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPGESGLSTEQRKRLTIAVELVA---NPSIIFM 853 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGerqrv~ia~~l~~---~p~illl 853 (1275)
+||.|.+.|...+. . ..+..++++.+||... .+..+ +.||||||||+.||++|+. +|++++|
T Consensus 790 ~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 790 MTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 56677766654331 0 1124578888999653 34443 4799999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee-----cCcEEEEECCCC
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK-----RGGQEIYVGPLG 916 (1275)
Q Consensus 854 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gg~~~~~g~~~ 916 (1275)
||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. +||++++.|+++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 9999999999999999999999878999999999975 446799999994 578999999863
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=327.38 Aligned_cols=209 Identities=20% Similarity=0.274 Sum_probs=171.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|+++.+... ..+.+|+|+||++++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCCC----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee
Confidence 47788887765311 12469999999999999999999999999999999999865 3489999999641
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
++.+...+.+.+|++|++.+..... ..+.++..++++++++.+++.+..+..+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1222334567789999998754332 1233444556788999999988777765 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|++++|.+ |+++..|+++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999998777999999999985 56778999999985 7999999874
Q ss_pred c
Q 000808 917 R 917 (1275)
Q Consensus 917 ~ 917 (1275)
+
T Consensus 229 e 229 (549)
T PRK13545 229 E 229 (549)
T ss_pred H
Confidence 3
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=365.60 Aligned_cols=211 Identities=24% Similarity=0.364 Sum_probs=175.9
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++|+|+ +++++|+|+|++|+|||.+||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 4699999999984 12469999999999999999999999999999999999876 358999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
+.. ..+++.+|||+|++.+++. |++||+.++.. .+.+. +.+.++++..++.+. .|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 643 4567889999999998864 99999986421 12222 335666666666432 36666653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|+||+||||||+||++++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999875 4799999999985 5688999999986
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 799999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=318.35 Aligned_cols=221 Identities=24% Similarity=0.293 Sum_probs=173.8
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---ceEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~---~~~~G~i~~~g 753 (1275)
.+.++|+++.+. .+.+|+++|++|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999998873 23599999999999999999999999999999999997531 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCC---------CCC-HHHHHHHHHHHHHHcCCCccc
Q 000808 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP---------EVD-SETQKMFIEEIMELVELNPLR 818 (1275)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~~ 818 (1275)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87542 123467899999988877 59999998764321100 011 122345678899999884322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhh
Q 000808 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898 (1275)
Q Consensus 819 ~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 898 (1275)
.... +...+.||||||||++||+||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|
T Consensus 191 ~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 1111 112357999999999999999999999999999999999999999999999876 589999999986 4677899
Q ss_pred hhh-eeecCcEEEEECCC
Q 000808 899 ELF-LMKRGGQEIYVGPL 915 (1275)
Q Consensus 899 ~~~-~l~~gg~~~~~g~~ 915 (1275)
+++ +|.+ |+++..|++
T Consensus 268 ~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLTG-GELVEYDDT 284 (305)
T ss_pred EEEEEecC-CEEEEeCCH
Confidence 975 5664 899999986
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=311.76 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=166.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 478899988773 2359999999999999999999999999999999999865 34799999872
Q ss_pred CcccccceEEEeccCCCCCCCC--CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
..++|++|++.+++.+ |+.+++.+. .... ++++.++++.+|+.+..+..+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 3589999998777654 777776431 1111 234678999999988777665 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|. + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999986 5678899999995 4 588888
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 763
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=329.99 Aligned_cols=191 Identities=27% Similarity=0.359 Sum_probs=161.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.++||+|++.+||.+||.||+.|+.+.++..
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 117 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP- 117 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC-
Confidence 47999999999999999999999987 999999999886533 2467999999999999999999999976432110
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
..+....++++++.+||++..+ +.+.+|||||||||+|||||
T Consensus 118 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 118 ---------------------------------AAEITPRVMEALRMVQLEEFAQ-----RKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0011223567888999976554 45668999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++|||||||++||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++..|+++++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876543 455666899999999999999999999999999998874
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=346.51 Aligned_cols=216 Identities=23% Similarity=0.272 Sum_probs=175.7
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcC----
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---- 753 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g---- 753 (1275)
++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+..+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 35788887763 2469999999999999999999999999999999999741013479999872
Q ss_pred -------------------ccCC----------c---ccccceEEEeccC-CCCCCCCCHHHHHHHHHhccCCCCCCHHH
Q 000808 754 -------------------YPKK----------Q---ETFTRISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSET 800 (1275)
Q Consensus 754 -------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~l~~~~~~~~~~ 800 (1275)
.++. . ...++.++|++|+ +.+++.+||+|++.+..... ....++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 1110 0 1134568999997 67888899999998865432 123344
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CC
Q 000808 801 QKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 879 (1275)
Q Consensus 801 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g 879 (1275)
.++++.++++.+||.+..+..+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 5567899999999988777665 47999999999999999999999999999999999999999999999865 48
Q ss_pred CEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 880 RTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 880 ~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
+|||+++|+++ .+.+.+|++++|++ |++++.|+.+
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHH
Confidence 99999999986 46678999999986 7888888763
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=337.98 Aligned_cols=193 Identities=22% Similarity=0.390 Sum_probs=157.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
.||||||||+||||+.++|...++|+ +|+|++||+|+++.+. |+.+|+|.|+|.+|. .||+|||.|+...
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~~--- 568 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDN--- 568 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCCC---
Confidence 48999999999999999999999998 9999999999987764 589999999999885 5999999997541
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
.+.++...+|.+. .+++. ..+++++.||.||+++. .||||||||++|||
T Consensus 569 ----------------------~t~e~i~~AAk~A------Nah~F--I~~~p~gY~T~VGEkG~-qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 569 ----------------------ATDEEIEAAAKMA------NAHEF--ITNFPDGYNTVVGEKGS-QLSGGQKQRIAIAR 617 (716)
T ss_pred ----------------------CCHHHHHHHHHHh------ChHHH--HHhCccccccccCCccc-cccchHHHHHHHHH
Confidence 1111112222111 11112 23589999999997665 79999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
||+.||+||+|||.||+||+++...+.+.|.+..+ +.++++|.|.. +..+.+|+|+++++|++++.|+++|+++
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRL-STV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRL-STVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhh-hHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999999987643 34555566665 5677899999999999999999999875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=362.79 Aligned_cols=212 Identities=26% Similarity=0.405 Sum_probs=174.2
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++|+.. +++++|+|+|++++|||++||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 469999999998521 124699999999999999999999999999999999998763 48999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
+++ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 653 346778999999998886 69999997642 1 222 2346677777776543 35566643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|+|++||||||+||+++++.+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999988 22 235899999999975 5678999999985
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 689 -G~ive~Gt~~ 698 (711)
T TIGR00958 689 -GSVVEMGTHK 698 (711)
T ss_pred -CEEEEeeCHH
Confidence 7999999863
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=297.22 Aligned_cols=160 Identities=26% Similarity=0.440 Sum_probs=141.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCC
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQND---IHSPF 777 (1275)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 777 (1275)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999866 3479999999876431 2356799999984 57788
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000808 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPt 857 (1275)
+|++||+.+... ||||||||++|||||+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999975320 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 858 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 858 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
+|||+.++..+.+.|+++.++|+|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999998777899999999975 57788999999986 44
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=308.31 Aligned_cols=210 Identities=23% Similarity=0.332 Sum_probs=166.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++|++++++. +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEh
Confidence 4788999887631 12469999999999999999999999999999999999865 3479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-cc-----CCCC
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL-VG-----LPGE 827 (1275)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~-----~~~~ 827 (1275)
.. ..+++.++|++|++.+++ .|++||+.+.. ... .+.+.+.++.+++.+..+.. .| ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 137 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGG 137 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 32 234567999999988776 59999986421 111 12355667777765543321 00 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++ ..+|++++|++ |
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLDK-G 213 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999864 689999999985 34 45899999986 7
Q ss_pred EEEEECC
Q 000808 908 QEIYVGP 914 (1275)
Q Consensus 908 ~~~~~g~ 914 (1275)
+++..|+
T Consensus 214 ~~~~~~~ 220 (221)
T cd03244 214 RVVEFDS 220 (221)
T ss_pred eEEecCC
Confidence 8888775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=295.97 Aligned_cols=204 Identities=25% Similarity=0.335 Sum_probs=169.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ----RTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ ..++.-+|...+|+++||.||+..++..+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 58999999999999999999999998 99999999999876543 457888999999999999999999865431
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
. +.......+ ...+..+..+....+|+.+||.+.+|+..| +||+|||||+.||
T Consensus 109 ~---~~~~l~~~~-------------------~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIA 161 (250)
T COG0411 109 G---LSGLLGRPR-------------------ARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIA 161 (250)
T ss_pred h---hhhhhcccc-------------------chhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHH
Confidence 0 000000000 000112334456789999999999887665 5999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|||+.+|++|+||||.+||.+....++.+.++++.+ ..+.+|+.+.|+++-+..+||||+||+.|+++.+|+|+++.+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999999999999999999865 346788889999999999999999999999999999999864
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=297.25 Aligned_cols=186 Identities=26% Similarity=0.389 Sum_probs=161.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+. ..+|.+|||+|+--+||.+||+-|+.|+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 58999999999999999999999998 99999999765332 235889999999999999999999999653
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
.. .....|.+.+.||+++.. ++++.+|||||||||
T Consensus 103 ~~----------------------------------------~~~~fd~iv~lLGI~hLL-----~R~P~~LSGGEkQRV 137 (352)
T COG4148 103 KS----------------------------------------MRAQFDQLVALLGIEHLL-----DRYPGTLSGGEKQRV 137 (352)
T ss_pred cc----------------------------------------chHhHHHHHHHhCcHHHH-----hhCCCccCcchhhHH
Confidence 11 011246678889998765 466778999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|+|||++.|++|+||||.+.||-.-..+++-.|.++.++. +.-|+.++|..+|+.+++|+|++|++|||...|+.+++
T Consensus 138 AIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 99999999999999999999999999999999999987655 45566689999999999999999999999999999887
Q ss_pred HH
Q 000808 234 LD 235 (1275)
Q Consensus 234 ~~ 235 (1275)
.+
T Consensus 217 ~~ 218 (352)
T COG4148 217 WG 218 (352)
T ss_pred hc
Confidence 53
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=299.89 Aligned_cols=183 Identities=25% Similarity=0.305 Sum_probs=152.7
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 5778887763 235999999999999999999999999999999999974111458999999987643
Q ss_pred c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000808 759 E---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 759 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 834 (1275)
. . .++.++|++|++.+++..|+++++. .. .+.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHHH
Confidence 1 1 2345899999988888888877650 00 13599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHH-hhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-SFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~gg~~~~~g 913 (1275)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+ .+|++++|++ |+++..|
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~ 187 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSG 187 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998777899999999975 3444 6999999986 7899988
Q ss_pred CC
Q 000808 914 PL 915 (1275)
Q Consensus 914 ~~ 915 (1275)
+.
T Consensus 188 ~~ 189 (200)
T cd03217 188 DK 189 (200)
T ss_pred cH
Confidence 54
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=349.93 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=179.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++++... .+..++|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEe
Confidence 48899999887421 1124699999999999999999999999999999999998653 368888887532
Q ss_pred C-------------cc---cc-cceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 000808 757 K-------------QE---TF-TRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP- 816 (1275)
Q Consensus 757 ~-------------~~---~~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~- 816 (1275)
. .. .. ++.+|||+|++ .+++.+||.|++.+...... ..+..+.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 11 24689999997 67888999999998765421 2234445567899999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHH
Q 000808 817 --LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDI 893 (1275)
Q Consensus 817 --~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~ 893 (1275)
..+..+ ..|||||||||+||+||+.+|++|||||||++||+.++..+.++|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 345544 479999999999999999999999999999999999999999999999765 899999999975 56
Q ss_pred HHhhhhhheeecCcEEEEECCCC
Q 000808 894 FESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 894 ~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
.+.+|++++|++ |+++..|++.
T Consensus 233 ~~~adri~vl~~-G~i~~~g~~~ 254 (623)
T PRK10261 233 AEIADRVLVMYQ-GEAVETGSVE 254 (623)
T ss_pred HHhCCEEEEeeC-CeecccCCHH
Confidence 788999999996 7999888763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=343.88 Aligned_cols=222 Identities=20% Similarity=0.256 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc---eEEEEEEEcC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~---~~~G~i~~~g 753 (1275)
-++++|++++++.. ...+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37889999887410 01246999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCcc------cc-cceEEEeccCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 000808 754 YPKKQE------TF-TRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL---RQSL 821 (1275)
Q Consensus 754 ~~~~~~------~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 821 (1275)
.++... .. ++.+||++|++. +.+.+|+.|++.+...... ..+..+.+++++++++.+||.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876421 11 246899999974 5677899999876432211 22344456778999999999763 3555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhh
Q 000808 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEL 900 (1275)
Q Consensus 822 ~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 900 (1275)
+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+...+|++
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 4 479999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred heeecCcEEEEECCCC
Q 000808 901 FLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 901 ~~l~~gg~~~~~g~~~ 916 (1275)
++|++ |++++.|++.
T Consensus 228 ~~l~~-G~i~~~g~~~ 242 (529)
T PRK15134 228 AVMQN-GRCVEQNRAA 242 (529)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99996 7899998763
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=312.62 Aligned_cols=208 Identities=26% Similarity=0.402 Sum_probs=161.7
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 5778877652 12359999999999999999999999999999999999865 358999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCCC
Q 000808 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS-------LVGLPGES 828 (1275)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~~ 828 (1275)
..+++.++|++|++.+++ .|++||+.+... ...... +.+.++..++.+..+. ... ...+
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCC
Confidence 234567899999988875 699999976531 111111 2333344443322111 111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 829 ~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ |+|||+++|+++ .+ ..+|++++|++ |+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~ 212 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GR 212 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999876 899999999986 34 45999999986 78
Q ss_pred EEEECCC
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
++..|+.
T Consensus 213 i~~~~~~ 219 (236)
T cd03253 213 IVERGTH 219 (236)
T ss_pred EEeeCCH
Confidence 8888875
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=276.65 Aligned_cols=191 Identities=22% Similarity=0.341 Sum_probs=162.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
.++++||||||||||||+++|.++|. .|+|.+||++++... ..-|.|+|++.++|-+||.||+.|+.+++++++
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k- 106 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK- 106 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCC--ccceeEeccCccchhhHHHHHHHHHHHhcCCCH-
Confidence 36899999999999999999999997 999999999886543 245899999999999999999999999887532
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
.++..++...+...||++..+.. +-.|||||||||.|||||+
T Consensus 107 ---------------------------------~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa 148 (259)
T COG4525 107 ---------------------------------AQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALA 148 (259)
T ss_pred ---------------------------------HHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhh
Confidence 11223466788999998876544 4579999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEec--CCeEEEecChhhHHHH
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DAQIVYQGPRELVLDF 236 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~--~G~i~~~G~~~~~~~~ 236 (1275)
.+|++|+||||+++||+-+++++.+.|.+..+..+ .-++.++|..+|+.-+++++++|+ .|+|+..-+++..+.|
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999999999999999999998877654 455568999999999999999998 5899988777655443
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=297.07 Aligned_cols=194 Identities=20% Similarity=0.303 Sum_probs=147.3
Q ss_pred CCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcC
Q 000808 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1275)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g 753 (1275)
.|..+-+.||+|.++ +.++++++++|-|.--..++|+||||.||||||+.|.|...+ ..|+..-|
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn- 647 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN- 647 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc-
Confidence 356788899998874 456899999999999999999999999999999999998763 35553322
Q ss_pred ccCCcccccceEEEeccCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000808 754 YPKKQETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 754 ~~~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 831 (1275)
.+-.+|+..|+. .+-..-|.-|.|.-.. +.+.+ .....|-.+||...++++- .+.||
T Consensus 648 -------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 648 -------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQ----EARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred -------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCChH----HHHHHhhhhhhhhccceEe----eeecC
Confidence 233578877753 2334457777764221 22222 2456788899998888764 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
||||-||++|..-+..|+||||||||++||.++...+-+.|++. ...||+++||.+. +.+.-+.+.++.+.|
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQG 778 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCC
Confidence 99999999999999999999999999999999999999998886 4579999999763 344445556665544
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.90 Aligned_cols=191 Identities=26% Similarity=0.328 Sum_probs=160.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.+++.+..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999887532 22457999999999999999999999876543210
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+....++++++.+||++..++. ++.|||||||||+||+|
T Consensus 98 ~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~a 138 (302)
T TIGR01188 98 K----------------------------------DEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAAS 138 (302)
T ss_pred H----------------------------------HHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHH
Confidence 0 00112356789999998766554 45799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|+.+|++++|||||+|||+.++..+++.++++.+ . +++|+.++|+.+++.++||+|++|++|++++.|+++++.+
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999998754 3 5566678999999999999999999999999999988764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=289.94 Aligned_cols=191 Identities=23% Similarity=0.351 Sum_probs=155.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||+||||||++|+|..++. +|+|.++|++++...+ +..++||||....|+.+||+|||..++..+.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 58999999999999999999999876 9999999999977644 3579999999999999999999998764321
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhC-CccccccccCCCccccccccccchhhH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG-LEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1275)
. ++.. + . ..+++.+.|= |.+-. ++...+|||||||-++|
T Consensus 108 ~-~~~~------~----------~------------------~~e~v~~lFP~Lker~-----~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 108 D-KEAQ------E----------R------------------DLEEVYELFPRLKERR-----NQRAGTLSGGEQQMLAI 147 (237)
T ss_pred c-cccc------c----------c------------------cHHHHHHHChhHHHHh-----cCcccCCChHHHHHHHH
Confidence 1 0000 0 0 0112222211 22222 23455799999999999
Q ss_pred HHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
||||+++|++|+|||||.||-|.-..+|.+.++++.+. .+.+|+.+.|+...+.+++||.++|++|+++++|+.+++.+
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998754 35678889999999999999999999999999999998864
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=295.22 Aligned_cols=176 Identities=27% Similarity=0.474 Sum_probs=148.5
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+.. .++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHH
Confidence 357788877631 113599999999999999999999999999999999998653 4799999998653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
. ..+++.++|++|++.+++ .|++||+ ...||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234567899999987775 6888886 136999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
||++|||+|+.+|++++|||||+|||+.++..+++.|+++. +++|||+++|+++ .+ +.+|++++|++ |++++.|
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999985 4899999999986 34 57999999986 7887654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=316.92 Aligned_cols=217 Identities=26% Similarity=0.376 Sum_probs=178.2
Q ss_pred CCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcC
Q 000808 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1275)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g 753 (1275)
..+.++|+|+++.|+ .+|++|+||||++.||+.+||+||||+||||++++|....+ ..+|.|.|||
T Consensus 534 ~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDg 599 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDG 599 (790)
T ss_pred cCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEcC
Confidence 457899999999986 35689999999999999999999999999999999998655 4589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHH--HHH-HHcCCCccccccccCCCC
Q 000808 754 YPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIE--EIM-ELVELNPLRQSLVGLPGE 827 (1275)
Q Consensus 754 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~--~~l-~~l~l~~~~~~~~~~~~~ 827 (1275)
++++. ...|+.+|.||||..+|.+ |+..|+.|+. | +.+.++..+... .+- +.++..+-.++.+|..+.
T Consensus 600 qdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 600 QDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL 673 (790)
T ss_pred chHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc
Confidence 99754 4577889999999988864 8888888752 2 223333222111 111 235666667888886543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
.|||||||||+|||+++++|.|++|||+||+||..+.+.|+..|.++++ ++|.|++.|+.|. .-.+|.|+++++ |
T Consensus 674 -kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~-G 748 (790)
T KOG0056|consen 674 -KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISN-G 748 (790)
T ss_pred -ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeC-C
Confidence 5999999999999999999999999999999999999999999999875 7899999999873 446799999996 7
Q ss_pred EEEEECCC
Q 000808 908 QEIYVGPL 915 (1275)
Q Consensus 908 ~~~~~g~~ 915 (1275)
+++.-|.-
T Consensus 749 ~IvErG~H 756 (790)
T KOG0056|consen 749 RIVERGRH 756 (790)
T ss_pred eEeecCcH
Confidence 99999875
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=310.14 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=164.5
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 77 (226)
T cd03248 10 GIVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKP 77 (226)
T ss_pred ceEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCc
Confidence 358899999887411 12359999999999999999999999999999999999865 347999999986
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDS---ETQKMFIEEIMELV--ELNPLRQSLVGLPGE 827 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~---~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~ 827 (1275)
... ...++.++|++|++.+++ .|++||+.+..... .... ......+++.++.+ |+.+..+..+
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~----- 148 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEKG----- 148 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----
Confidence 532 223467899999988776 59999997643211 1100 01112346777877 6766555543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCc
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 907 (1275)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ ++ ..+|++++|++ |
T Consensus 149 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g 224 (226)
T cd03248 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-G 224 (226)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 57999999999999999999999999999999999999999999999865 689999999986 34 45999999986 4
Q ss_pred E
Q 000808 908 Q 908 (1275)
Q Consensus 908 ~ 908 (1275)
+
T Consensus 225 ~ 225 (226)
T cd03248 225 R 225 (226)
T ss_pred c
Confidence 4
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=346.98 Aligned_cols=213 Identities=29% Similarity=0.414 Sum_probs=173.1
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++. +++++|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEe
Confidence 46999999998841 22469999999999999999999999999999999999876 348999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 825 (1275)
... ..+++.++|++|++.+++. |++||+.+.. .+.+++ .+.++++..++.+ -.|+.+|..
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 451 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG 451 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC
Confidence 643 3456789999999998875 9999997432 122222 2334444444332 224555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
...||||||||++|||||+++|++|+|||||||||++++..+.+.|+++..+|+|+|+++|+++ ..+.+|++++|++
T Consensus 452 -g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~ 528 (544)
T TIGR01842 452 -GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD 528 (544)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999988656899999999985 4678999999986
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 529 -G~i~~~g~~ 537 (544)
T TIGR01842 529 -GRIARFGER 537 (544)
T ss_pred -CEEEeeCCH
Confidence 799999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=292.39 Aligned_cols=168 Identities=28% Similarity=0.451 Sum_probs=145.0
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|++++++. .++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 57788876631 12459999999999999999999999999999999999865 347999999987642
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
..+++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234567899999988777 4998876 899999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+ +.+|++++|++ |+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 172 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEEC-CC
Confidence 9999999999999999999999999999999999999998777999999999975 34 68999999986 54
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=325.45 Aligned_cols=191 Identities=21% Similarity=0.295 Sum_probs=161.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.+|||+|++.+|+.+||.||+.|+.+.++..
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 122 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP- 122 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC-
Confidence 47999999999999999999999987 999999999875433 3578999999999999999999999976532110
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
..+....++++++.+||.+.. ++.+.+|||||||||+|||||
T Consensus 123 ---------------------------------~~~~~~~v~~~l~~l~L~~~~-----~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 123 ---------------------------------KAEIASRVNEMLGLVHMQEFA-----KRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHH
Confidence 001122456788999997554 455678999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++|||||||++||+.++.++.+.++++.+.. +.+++.++|+.+++..++|++++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999998876544 456666899999999999999999999999999998874
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=289.92 Aligned_cols=218 Identities=23% Similarity=0.356 Sum_probs=181.3
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
..-++++|++..++ +|+||+|||.+|+|||..+|+|||||||||||++++|...+. +|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r~-------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRRN-------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEEC-------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeee
Confidence 34699999998763 567999999999999999999999999999999999976643 788999988
Q ss_pred cCCc----ccccceEEEeccC--CCCCCCCCHHHHHHH--HHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000808 755 PKKQ----ETFTRISGYCEQN--DIHSPFVTVYESLLY--SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1275)
Q Consensus 755 ~~~~----~~~~~~~~~v~q~--~~~~~~ltv~e~l~~--~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 826 (1275)
...+ ...|+.+|+|.-+ ..+.+..+|+|-+.- .+..........++..+++..+++.+|+.+.+|+..+
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--- 170 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG--- 170 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh---
Confidence 7543 3457889999643 334456788888752 2333333322334556778999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCHHHHHhhhhhheee
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.||-||||||-|||||+.+|++||||||++|||...++.+.+.|.+++.. +.++|++||.+. ++-..|+++++++
T Consensus 171 --~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~ 247 (257)
T COG1119 171 --SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK 247 (257)
T ss_pred --hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEee
Confidence 69999999999999999999999999999999999999999999998765 789999999986 7889999999999
Q ss_pred cCcEEEEECC
Q 000808 905 RGGQEIYVGP 914 (1275)
Q Consensus 905 ~gg~~~~~g~ 914 (1275)
+ |+++++|.
T Consensus 248 ~-g~v~~~g~ 256 (257)
T COG1119 248 E-GEVVAQGK 256 (257)
T ss_pred C-Cceeeccc
Confidence 6 78998874
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=348.56 Aligned_cols=188 Identities=28% Similarity=0.444 Sum_probs=157.4
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++|+|+ +++++|+|+|++++|||++||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYP------------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecC------------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 4699999999984 123599999999999999999999999999999999998763 48999999987
Q ss_pred CC--cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000808 756 KK--QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLPG 826 (1275)
Q Consensus 756 ~~--~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 826 (1275)
++ ...+++.++||+|++.+++ -|++||+.++. + +.+ +++++++++..++.+. .|+.+|..+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR----P-DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 65 3456678999999999886 49999998752 1 222 2346777887777543 367777543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 889 (1275)
.+||||||||++|||||+++|+||+||||||+||++++..+.+.++++. +++|+|+++|++
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5799999999999999999999999999999999999999999999864 479999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=347.53 Aligned_cols=192 Identities=27% Similarity=0.416 Sum_probs=155.7
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 2 ~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+||+|+||||||||+|+|+|++.|. +|+|.+||.|+.+.+ .|+++|||+|++.+| +.|++||+.++..
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p----- 572 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNP----- 572 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCCC-----
Confidence 7999999999999999999999997 999999999987654 468999999987765 6799999998532
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
+.+.+..+++|....- ++ ....+|.+.+|.||+. +.+||||||||++||||
T Consensus 573 --------------------~~~~e~i~~A~~~ag~------~~--fI~~lP~gy~t~v~E~-G~~LSGGQrQrlalARa 623 (709)
T COG2274 573 --------------------EATDEEIIEAAQLAGA------HE--FIENLPMGYDTPVGEG-GANLSGGQRQRLALARA 623 (709)
T ss_pred --------------------CCCHHHHHHHHHHhCc------HH--HHHhcccccccccccC-CCCCCHHHHHHHHHHHH
Confidence 1122222333322111 11 1234899999999965 55899999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|+++|+||+||||||+||+.+...|.+.|.+..+ ++|+|+ ++|.. ...+.||||++|++|+++++|+++++.+
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~-IaHRl-~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVII-IAHRL-STIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEE-EEccc-hHhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999998642 456555 44433 5788999999999999999999999986
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=321.03 Aligned_cols=191 Identities=26% Similarity=0.353 Sum_probs=160.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+||++|++.+++.+||.||+.+.+.+.+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999987542 23567999999999999999999999765432210
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+....++.+++.+||++..++.+ ++|||||||||+||+|
T Consensus 146 ----------~------------------------~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 146 ----------T------------------------REIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRLTLARA 186 (340)
T ss_pred ----------H------------------------HHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHHHHHH
Confidence 0 001112456788899987766555 4799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|+++|++++|||||+|||+.++.++++.++++.+ . +.+|++++|+.+++.++||+|++|++|++++.|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999754 3 5567778999999999999999999999999999998864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=322.77 Aligned_cols=195 Identities=25% Similarity=0.346 Sum_probs=161.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+||+||+.|+.+......
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 47999999999999999999999987 9999999998754332 4679999999999999999999999754311000
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
... ..+....++++++.+||++..+ +.+..|||||||||+|||||
T Consensus 107 ~~~------------------------------~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 107 RPN------------------------------AAAIKAKVTQLLEMVQLAHLAD-----RYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred CCC------------------------------HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 000 0011224567899999976554 45668999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++++|||||+|||+.++.++.+.|+++.+. .+.+++.++|+.+++..++|+|++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999987653 3556667899999999999999999999999999998874
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=304.12 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=159.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCC--CCCHHHHHHHHH
Q 000808 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSP--FVTVYESLLYSA 788 (1275)
Q Consensus 711 ~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~--~ltv~e~l~~~~ 788 (1275)
+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.+++ .+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4689999999999999999999999999865 347999999987532 3456899999987643 479999998753
Q ss_pred hccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 000808 789 WLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867 (1275)
Q Consensus 789 ~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~ 867 (1275)
..... ........+++++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111233456888999999987777665 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 868 VMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 868 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
+.+.|+++.++|+|||+++|+++ ++.+.+|+++++ + |++++.|+.+
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999998777999999999976 577889999998 5 7999999874
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=349.56 Aligned_cols=211 Identities=26% Similarity=0.377 Sum_probs=174.8
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++. ++++|+|+|++++|||+++|+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 46999999999841 23599999999999999999999999999999999998763 48999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
... ..+++.++|++|++.+++ .|++||+.++. + +.++ +.++++++.+++.+. .|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DATD----EEMRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 653 356778999999998886 59999997641 1 2222 235566666665432 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
.+.||||||||++|||||+++|+|++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~ 544 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN 544 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999998875 4799999999974 5688999999986
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 545 -G~i~~~g~~ 553 (588)
T PRK13657 545 -GRVVESGSF 553 (588)
T ss_pred -CEEEEeCCH
Confidence 789988875
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=307.35 Aligned_cols=192 Identities=28% Similarity=0.374 Sum_probs=156.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 47999999999999999999999987 999999998875422 245799999999899999999999986432
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.. . .. . ++....++++++.+||++..++ .++.|||||||||+
T Consensus 105 ~~-~--~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ 146 (235)
T cd03261 105 HT-R--LS------E------------------------EEIREIVLEKLEAVGLRGAEDL-----YPAELSGGMKKRVA 146 (235)
T ss_pred cc-C--CC------H------------------------HHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 10 0 00 0 0011234567888999765543 45679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|++++|||||+|||+.++..+.+.+++..+.. +++|++++|+.+++..+||++++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999999999999999999875432 455666888888999999999999999999999887653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=357.76 Aligned_cols=214 Identities=26% Similarity=0.411 Sum_probs=176.6
Q ss_pred CcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCc
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
...++++|++++|+. +++.+|+|+|++++|||++||+|+||||||||+|+|+|..++ .+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 357999999999841 234699999999999999999999999999999999998763 4799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000808 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGL 824 (1275)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~ 824 (1275)
+++. ..+++.++||+|++.+++ .|++||+.++. + +.+. +.+.++++..++.+. .|+.+|.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCCH----HHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8653 356778999999998886 59999997631 1 2222 235566666665432 3566665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
. ..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++|+
T Consensus 590 ~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 K-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 4 46899999999999999999999999999999999999999999999875 5899999999985 456799999998
Q ss_pred cCcEEEEECCCC
Q 000808 905 RGGQEIYVGPLG 916 (1275)
Q Consensus 905 ~gg~~~~~g~~~ 916 (1275)
+ |+++..|+.+
T Consensus 666 ~-G~i~~~g~~~ 676 (694)
T TIGR01846 666 K-GQIAESGRHE 676 (694)
T ss_pred C-CEEEEeCCHH
Confidence 6 7999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=286.44 Aligned_cols=164 Identities=27% Similarity=0.424 Sum_probs=141.3
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 2 ~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~---- 63 (166)
T cd03223 2 ELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC----
Confidence 5778887763 12459999999999999999999999999999999999865 34799999873
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000808 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838 (1275)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv 838 (1275)
+.++|++|++.++ ..|++||+.+. . ...||||||||+
T Consensus 64 ----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHHH
Confidence 5689999998764 57999998642 0 146999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcE
Q 000808 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 839 ~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 908 (1275)
+|||+|+.+|++++|||||+|||+.++..+.+.++++ ++|+|+++|+++ ....+|++++|+++|.
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 9999999999999999999999999999999999876 589999999975 4578999999998774
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=324.03 Aligned_cols=191 Identities=25% Similarity=0.374 Sum_probs=159.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.|+.+.++..
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 106 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 106 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 999999999875432 2467999999999999999999999976432210
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
. .+....++++++.+||++..+ +.+.+|||||||||+|||||
T Consensus 107 ---------~------------------------~~~~~~~~~~l~~lgL~~~~~-----~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 107 ---------K------------------------EEINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred ---------H------------------------HHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHH
Confidence 0 011123567889999976554 44567999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+.+++..++|+|++|++|+++..|+++++.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876533 455666888889999999999999999999999988874
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=310.47 Aligned_cols=212 Identities=23% Similarity=0.303 Sum_probs=165.2
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++. .++.+|+|+|++++|||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEE
Confidence 46999999988741 12459999999999999999999999999999999999865 358999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL-------VGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~ 825 (1275)
... ..+++.++|++|++.+++ .|++||+.... .... +.++++++..++.+..+.. .+ .
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~ 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVT-E 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEec-c
Confidence 643 234567899999998776 59999884311 1111 1233344444443322221 11 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++. +++|||+++|+++. +. .+|++++|++
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~ 229 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSR 229 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEEC
Confidence 235799999999999999999999999999999999999999999999874 48999999999863 44 5999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+++
T Consensus 230 -G~i~~~g~~~ 239 (257)
T cd03288 230 -GILVECDTPE 239 (257)
T ss_pred -CEEEEeCCHH
Confidence 7999998863
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=294.73 Aligned_cols=175 Identities=28% Similarity=0.443 Sum_probs=144.3
Q ss_pred EEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-
Q 000808 680 FDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 758 (1275)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 758 (1275)
++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~ 66 (180)
T cd03214 2 VENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASL 66 (180)
T ss_pred eeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcC
Confidence 567777663 2359999999999999999999999999999999999865 348999999987542
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000808 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 836 (1275)
..+++.++|++| +++.+|+.+..++.+ +.|||||||
T Consensus 67 ~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~q 104 (180)
T cd03214 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----NELSGGERQ 104 (180)
T ss_pred CHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHH
Confidence 112334566666 556667765555443 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 837 rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998766 899999999986 56688999999986 6777653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=297.33 Aligned_cols=200 Identities=23% Similarity=0.273 Sum_probs=159.9
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 71 (207)
T cd03369 5 GEIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGID 71 (207)
T ss_pred CeEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEE
Confidence 35889999987641 123599999999999999999999999999999999998653 47999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
... ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +.. ...|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~~-----~~~LS~ 128 (207)
T cd03369 72 ISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SEG-----GLNLSQ 128 (207)
T ss_pred hHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cCC-----CCcCCH
Confidence 532 223567999999998776 59999996421 1111 11333333 2 222 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. +|+|+|+++|+++. + ..+|++++|++ |+++..
T Consensus 129 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~-~~~d~v~~l~~-g~i~~~ 204 (207)
T cd03369 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-I-IDYDKILVMDA-GEVKEY 204 (207)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEEC-CEEEec
Confidence 99999999999999999999999999999999999999999985 48999999999863 4 45899999996 788887
Q ss_pred CCC
Q 000808 913 GPL 915 (1275)
Q Consensus 913 g~~ 915 (1275)
|++
T Consensus 205 g~~ 207 (207)
T cd03369 205 DHP 207 (207)
T ss_pred CCC
Confidence 753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=292.89 Aligned_cols=191 Identities=20% Similarity=0.289 Sum_probs=156.1
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. ++.+++ +|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 56788888763 123555 999999999999999999999999999999865 34899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000808 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1275)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 837 (1275)
... ++.++|++|++.+++..|++||+.+..... . .+++++++++.+++.+..++.+ +.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHH
Confidence 322 345799999988888899999998754322 1 1235678889999987766654 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhh
Q 000808 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 900 (1275)
Q Consensus 838 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 900 (1275)
++|||+|+.+|++++|||||+|||+.++..+.+.|++..++|+|||+++|+++ ....+|-+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999876667899999999976 33444543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=349.39 Aligned_cols=213 Identities=25% Similarity=0.363 Sum_probs=176.8
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++. .++++|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 329 ~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEe
Confidence 46999999999841 124699999999999999999999999999999999998763 47999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
.+. ..+++.++|++|++.+++ .|++||+.++. +.+.+ +++++++++.+|+.+. .|+.+|..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 643 346678999999998875 59999997642 11222 2346777888777543 35556644
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
.+.||||||||++|||+++++|+|++||||||+||+.++..+.+.|++.. +++|+|++||+++ ..+.+|++++|++
T Consensus 467 -g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~ 542 (571)
T TIGR02203 467 -GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDD 542 (571)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeC
Confidence 45799999999999999999999999999999999999999999999875 4799999999974 6788999999985
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 543 -g~i~~~g~~ 551 (571)
T TIGR02203 543 -GRIVERGTH 551 (571)
T ss_pred -CEEEeeCCH
Confidence 799988875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=271.89 Aligned_cols=191 Identities=22% Similarity=0.339 Sum_probs=163.2
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc---ccccceEEEeccCCCCCCC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPF 777 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 777 (1275)
...++|+++|+++++||..+|.||||||||||+|+++...+ +.+|.+++.|.+.+. ..+|.+++||.|.+.+|+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 34579999999999999999999999999999999999876 458999999998753 4678889999999999985
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000808 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1275)
Q Consensus 778 ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEP 856 (1275)
||++|+.|...+|-.. .+ .....+.++.+++.+.. ++.+ ..||||||||++|+|-|..-|+||+||||
T Consensus 92 -tVeDNlifP~~~r~rr-~d----r~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR-PD----RAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred -chhhccccchHHhccC-CC----hHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999988776322 22 23456788888886543 2322 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 857 TSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
||+||+.+++.|-++|.++. .+.+.++-+||++. +....+|+++-+..
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~ 209 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP 209 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc
Confidence 99999999999999999987 56899999999986 56788999998886
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=338.87 Aligned_cols=206 Identities=18% Similarity=0.199 Sum_probs=171.6
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccc
Confidence 77899998873 2359999999999999999999999999999999999865 34799999887643
Q ss_pred c---ccccceEEEeccCCCC--C------CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000808 758 Q---ETFTRISGYCEQNDIH--S------PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1275)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~--~------~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 826 (1275)
. ...++.++|++|++.. + ..+|++|++.+. .+.+++++++++.+|+.+..+..+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc----
Confidence 2 1233458999998643 1 146888876431 122456789999999988777776
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|++++|++
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~- 210 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD- 210 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999999877999999999986 56788999999986
Q ss_pred cEEEEECCCC
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++..|+++
T Consensus 211 G~i~~~~~~~ 220 (490)
T PRK10938 211 CTLAETGERE 220 (490)
T ss_pred CEEEEeCCHH
Confidence 7899998764
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=344.59 Aligned_cols=212 Identities=22% Similarity=0.346 Sum_probs=174.1
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++. +++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 312 ~~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~ 378 (569)
T PRK10789 312 GELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIP 378 (569)
T ss_pred CcEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEE
Confidence 46899999998741 12469999999999999999999999999999999999876 348999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 825 (1275)
... ..+++.++|++|++.+++ .|++||+.++. + +.+. +.++++++..++.+ -.|+.+|..
T Consensus 379 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR----P-DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred HhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 643 345678999999998886 49999997642 1 2222 23456666666543 235556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +|+|+|+++|+++ ..+.+|++++|++
T Consensus 449 -g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~ 524 (569)
T PRK10789 449 -GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQH 524 (569)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999875 5899999999985 4577999999986
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 525 -G~i~~~g~~ 533 (569)
T PRK10789 525 -GHIAQRGNH 533 (569)
T ss_pred -CEEEEecCH
Confidence 799999986
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=292.35 Aligned_cols=191 Identities=24% Similarity=0.399 Sum_probs=165.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC---c----ccccceEEEeccCCCCCCCCCH
Q 000808 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~~~ltv 780 (1275)
++++..+.-.++||-|+||||||||+|+|+|...+ .+|.|.+||.-.. + ...+|.+|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP--deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc--cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 56777777579999999999999999999998763 4789999986431 1 1346789999999999999999
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000808 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1275)
Q Consensus 781 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgL 860 (1275)
+.||.|+.+.. .....+++.+.||+.|..++.. ..|||||||||+|+|||++.|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985422 2234688999999999999885 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 861 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 861 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
|...+.+++-.|.++.++ +.-|+.+||.+. |+..++|++++|.+ |++..+|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcHH
Confidence 999999999999999876 789999999985 79999999999996 7999999973
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=318.61 Aligned_cols=191 Identities=24% Similarity=0.339 Sum_probs=158.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999999875432 245799999999999999999999987543
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. . .+....++++++.+||++..++ .++.|||||||||+
T Consensus 110 ~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qRv~ 150 (343)
T PRK11153 110 AGTP----------K------------------------AEIKARVTELLELVGLSDKADR-----YPAQLSGGQKQRVA 150 (343)
T ss_pred cCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 2210 0 0011235668899999765544 45679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|++++|+.+++.++||++++|++|++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999876532 456666888888999999999999999999999988774
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=288.99 Aligned_cols=202 Identities=26% Similarity=0.366 Sum_probs=171.4
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc--ccccceEEEec-cCCCCCCCCC
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFTRISGYCE-QNDIHSPFVT 779 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lt 779 (1275)
..+++||||+|++|++++++|||||||||+||+|+|... +.+|.|.++|++.-. +.+-+.+++|+ |.-.+...+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 358999999999999999999999999999999999876 348999999987532 23345566664 5555666677
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000808 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859 (1275)
Q Consensus 780 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsg 859 (1275)
+.|.+.....+. +.+..+-+++.+...+.|+|++..+..+ +.||-|||.|+.||.+|+++|+||||||||=|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777776544333 4556677788899999999998888776 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 860 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 860 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
||..++..|.+.|++..+ .++||+.+||+.+ ++...||||++++. |+++|.|+..
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 999999999999999865 4899999999997 79999999999996 7999999973
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=308.30 Aligned_cols=216 Identities=23% Similarity=0.328 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++++++++.++ ...+++|||++|++||+.||+|.||||||||+++|.|... +.+|+|.++|++.
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 578888887764 3569999999999999999999999999999999999876 3589999999986
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.- +..+.-+|.|.|+..+.|++||.||+..+..-......+.....++++++.+..||.--.|.+++ .||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 42 23345689999999999999999999887543222234556667789999999999888888875 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
||||||.|-++|.++|++|||||||+-|-|.....+.++|++++++|+|||++||... |+.+.+|++.+|.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999986 79999999999996 677766
Q ss_pred CC
Q 000808 913 GP 914 (1275)
Q Consensus 913 g~ 914 (1275)
-+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 55
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=282.82 Aligned_cols=158 Identities=28% Similarity=0.418 Sum_probs=136.2
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECC
Confidence 35788888763 2359999999999999999999999999999999999876 34799999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000808 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1275)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 833 (1275)
.. ..++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 31 12345777777 8999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 834 erqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|.|||+++|++. ++.+.+|++++|.+ |++++
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 999999999999999999999999999999999999999998777899999999975 46678999999986 67654
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=300.52 Aligned_cols=190 Identities=29% Similarity=0.374 Sum_probs=155.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999876432 22357999999998899999999999865432110
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
..+....++++++.+||++..++. +..|||||||||+||+|
T Consensus 105 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la~a 145 (220)
T cd03265 105 ----------------------------------GAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEIARS 145 (220)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHH
Confidence 000112356788999997655544 45799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
++.+|++++|||||+|||+.++..+.+.++++.+.. ++++++++|+.+++...+|++++|++|+++..|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999999876532 45666688999999999999999999999999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=340.90 Aligned_cols=212 Identities=25% Similarity=0.310 Sum_probs=171.5
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++ +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFA------------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECC------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEE
Confidence 4699999999874 12358999999999999999999999999999999999876 358999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 825 (1275)
... ..+++.++|++|++.+++ .|++||+.++. + +.++++ ++++++..++.+ -.|+.+|..
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhccccccchhcCC
Confidence 643 345678999999998876 69999997642 1 222222 334444444432 234555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
..+||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 469 -~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~ 544 (585)
T TIGR01192 469 -GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ 544 (585)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999874 4899999999985 4577999999986
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 545 -G~i~~~g~~~ 554 (585)
T TIGR01192 545 -GRLIEKGSFQ 554 (585)
T ss_pred -CEEEEECCHH
Confidence 7899999863
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=342.64 Aligned_cols=201 Identities=28% Similarity=0.447 Sum_probs=166.8
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++. .++++|+|+|++++|||+++|+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 319 ~~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 36999999999841 124699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
..+ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+. .|+.+|..
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~ 455 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEG 455 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCC----HHHHHHHHHHcCcHHHHHhCcccccchhccc
Confidence 653 356778999999998886 59999997642 1 122 2346677777777543 35566543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
...||||||||++|||||+++|++++||||||+||+.+++.+.+.++++. +++|+|+++|+++ ..+.+|++++|
T Consensus 456 -g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 456 -GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 35799999999999999999999999999999999999999999999875 5899999999974 56789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=313.28 Aligned_cols=191 Identities=26% Similarity=0.360 Sum_probs=157.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999876432 22467999999998889999999998754322100
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+....++.+++.++|++..++.+ ++|||||||||+||+|
T Consensus 109 ----------~------------------------~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 109 ----------T------------------------REIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARA 149 (303)
T ss_pred ----------H------------------------HHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHH
Confidence 0 000112456788899987666544 5799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|+.+|++++|||||+|||+.++.++.+.++++.+ . +.+|+.++|+.+++.++||++++|++|++++.|+++++.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999998754 3 5566678999999999999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=294.99 Aligned_cols=195 Identities=21% Similarity=0.394 Sum_probs=148.4
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++.+.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g---- 66 (204)
T cd03250 1 ISVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG---- 66 (204)
T ss_pred CEEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----
Confidence 35788887763100 001359999999999999999999999999999999999765 3579999998
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCC
Q 000808 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ-------SLVGLPGESGL 830 (1275)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~~l 830 (1275)
.++|++|++.++ ..|++||+.+... ...+ ...+.++.+++.+..+ +.... ....|
T Consensus 67 ------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l 128 (204)
T cd03250 67 ------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGINL 128 (204)
T ss_pred ------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCCcC
Confidence 489999999887 4699999976421 1111 1233444444432211 11111 23579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 831 SgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
|+|||||++|||+|+.+|++++|||||+|||+.+...+.+ ++++..++|+|||+++|+++ .+.. +|++++|++|
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G 203 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNG 203 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCC
Confidence 9999999999999999999999999999999999999988 56666666899999999975 3444 9999999863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=319.19 Aligned_cols=191 Identities=20% Similarity=0.298 Sum_probs=158.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++..
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998754321 2479999999999999999999999765
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+... .+....++++++.+||.+..+ +.++.|||||||||
T Consensus 133 ~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~-----~~~~~LSgGq~QRv 173 (400)
T PRK10070 133 LAGINA----------------------------------EERREKALDALRQVGLENYAH-----SYPDELSGGMRQRV 173 (400)
T ss_pred hcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhh-----cCcccCCHHHHHHH
Confidence 432100 001123566889999976544 44568999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++|++++|+.+++.+++|+|++|++|++++.|+++++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999999875433 45566688889999999999999999999999998876
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 253 ~ 253 (400)
T PRK10070 253 L 253 (400)
T ss_pred H
Confidence 4
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=298.01 Aligned_cols=185 Identities=26% Similarity=0.383 Sum_probs=150.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~- 103 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP- 103 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCC-
Confidence 47999999999999999999999887 999999998875422 2457999999988888999999998864321100
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
. .+....++++++.+||++..++ .+..|||||||||+|||||
T Consensus 104 ---------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 104 ---------K------------------------AEIRARVRELLELVGLEGLLNR-----YPHELSGGQQQRVALARAL 145 (213)
T ss_pred ---------H------------------------HHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHH
Confidence 0 0011124567888999765544 3457999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
+.+|++++|||||+|||+.++.++.+.++++++. .+++|++++|+.+++.++||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987643 2455666888888999999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=333.86 Aligned_cols=223 Identities=28% Similarity=0.390 Sum_probs=193.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.+..++++..+.. .+.+++++|+.|++||+.|++|+|||||||++|+|.|..+ +.+|++.++|++.
T Consensus 564 ~~~~~~L~k~y~~------------~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i 629 (885)
T KOG0059|consen 564 ALVLNNLSKVYGG------------KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDI 629 (885)
T ss_pred eEEEcceeeeecc------------hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCcc
Confidence 4666677655531 1119999999999999999999999999999999999876 4589999999987
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 757 KQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
.. ...++.+|||||+|.+.+.+|.||++.+.+++|. ....+.++.++.+++.++|.+.+++.++ .+||
T Consensus 630 ~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySg 701 (885)
T KOG0059|consen 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSG 701 (885)
T ss_pred ccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCCC
Confidence 53 1256789999999999999999999999999884 3344556679999999999999999875 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 912 (1275)
|+|||+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.||.|||..+ |...+|||+.+|.+ |+....
T Consensus 702 G~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ci 779 (885)
T KOG0059|consen 702 GNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCI 779 (885)
T ss_pred cchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEe
Confidence 9999999999999999999999999999999999999999999888789999999865 67779999999997 789999
Q ss_pred CCCCccchHHHHHHh
Q 000808 913 GPLGRHSCHLIRYFE 927 (1275)
Q Consensus 913 g~~~~~~~~~~~~f~ 927 (1275)
|++ +++...|.
T Consensus 780 Gs~----q~LKsrfG 790 (885)
T KOG0059|consen 780 GSP----QELKSRYG 790 (885)
T ss_pred cCh----HHHHhhcC
Confidence 998 56666654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=306.38 Aligned_cols=191 Identities=24% Similarity=0.327 Sum_probs=156.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-------PQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+...
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999887 999999998875421 13469999999999989999999998654
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+.. . .+....++++++.+||++..++. ++.|||||||||
T Consensus 129 ~~~~~-------~---------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv 169 (269)
T cd03294 129 VQGVP-------R---------------------------AEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRV 169 (269)
T ss_pred hcCCC-------H---------------------------HHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHHHH
Confidence 32100 0 00112345678899997665544 457999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|||||+.+|++++|||||+|||+.++.++.+.++++.+. .+.+|++++|+.+++.+++|++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987643 245566678888889999999999999999999988776
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 4
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=344.27 Aligned_cols=213 Identities=25% Similarity=0.401 Sum_probs=175.0
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++.. +++.+|+|+|++++|||+++|+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 469999999998521 124699999999999999999999999999999999998763 47999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 825 (1275)
.+. ..+++.++|+||++.+++ .|++||+.++. + +.+ +++++++++.+++.+. .|+.+|..
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred HHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 643 345678999999998875 59999997641 1 122 2346677777776533 24445443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
...||||||||++||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....+|++++|++
T Consensus 474 -g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~ 549 (576)
T TIGR02204 474 -GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ 549 (576)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999974 5678999999986
Q ss_pred CcEEEEECCC
Q 000808 906 GGQEIYVGPL 915 (1275)
Q Consensus 906 gg~~~~~g~~ 915 (1275)
|+++..|+.
T Consensus 550 -g~~~~~g~~ 558 (576)
T TIGR02204 550 -GRIVAQGTH 558 (576)
T ss_pred -CEEEeeecH
Confidence 789998885
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=301.32 Aligned_cols=195 Identities=25% Similarity=0.365 Sum_probs=155.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 47999999999999999999999887 999999998865432 23579999999888889999999998654221000
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
+.+ ..+....++.+++.+||++..++ .+.+|||||||||+|||||
T Consensus 107 ~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 107 RPP------------------------------EAEIRAKVHELLKLVQLDWLADR-----YPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cCC------------------------------HHHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHH
Confidence 000 00011234567888998755443 4557999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++++|||||+|||+.++..+.+.++++++.. +.+|++++|+.+++...+|++++|++|++++.|+++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999876532 445666788888899999999999999999999887753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=294.81 Aligned_cols=187 Identities=24% Similarity=0.328 Sum_probs=147.3
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCC
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHS 775 (1275)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 775 (1275)
+.+++|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 469999999999999999999999999999999999865 347999999986532 12345689999998877
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000808 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS-------LVGLPGESGLSTEQRKRLTIAVELVANP 848 (1275)
Q Consensus 776 ~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~~~lSgGerqrv~ia~~l~~~p 848 (1275)
..|++||+.+... ... +...++++.+++.+..+. ..+. ....||||||||++|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999976421 111 123455666666443221 1111 23579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 849 SIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 849 ~illlDEPtsgLD~~~~~~i~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
++++|||||+|||+.+...+++ .++.+.++|+|+|+++|+++ .+ ..+|++++|.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 216 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD 216 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence 9999999999999999999998 66666566899999999986 34 57999999985
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=285.31 Aligned_cols=166 Identities=31% Similarity=0.512 Sum_probs=141.1
Q ss_pred EEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc
Q 000808 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1275)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 758 (1275)
+++|+++.+.. .+..+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~ 68 (171)
T cd03228 2 EFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRD 68 (171)
T ss_pred EEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhh
Confidence 56777776531 112599999999999999999999999999999999998653 47999999987542
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000808 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 835 (1275)
..+++.++|++|++.+++ .|+.||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 234567899999987765 5888776 899999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 836 qrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.. +|++++|++|
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g 170 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDG 170 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCC
Confidence 999999999999999999999999999999999999999854 799999999986 4544 9999999863
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=311.37 Aligned_cols=190 Identities=25% Similarity=0.341 Sum_probs=159.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+||++|++.+++.+||.||+.+.+.+.+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999887542 22467999999999999999999999876543210
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. ++....++.+++.+||.+..++. ++.|||||||||+||+|
T Consensus 107 ~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 107 G----------------------------------QLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVGLAQA 147 (301)
T ss_pred H----------------------------------HHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHHHHHH
Confidence 0 00112346688999998766544 45799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|+++|++++|||||+|||+.++.++++.++++. . +++|+.++|..+++.++||||++|++|++++.|+.+++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999874 2 3567778999999999999999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=316.24 Aligned_cols=192 Identities=25% Similarity=0.374 Sum_probs=151.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc---cccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
.|+|+|+||||||||+++|+|+.+|+ +|+|.+||.+.++. .++++++||+|++.+|+ .|+||||.++..-..
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~~s- 423 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPDAS- 423 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCcCC-
Confidence 38999999999999999999999987 99999999987665 46789999999987765 599999998532100
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
-.++.+..+. ..+.+.+.-+.+.||.+|+ ++++|||||+|||++||
T Consensus 424 ------~e~i~~al~~---------------------------a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 424 ------DEEIIAALDQ---------------------------AGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALAR 469 (559)
T ss_pred ------HHHHHHHHHH---------------------------hcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHH
Confidence 0011110000 0122333336788999996 56689999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|++++++++++||||++||.++++.|.+.|.+.++ ++|+++ ++|.. +....+|+|++|++|++++.|+++++.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itHrl-~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITHRL-EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcCh-HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999998764 345444 56655 4556679999999999999999999854
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=312.69 Aligned_cols=184 Identities=28% Similarity=0.390 Sum_probs=158.1
Q ss_pred EEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHH
Q 000808 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE 799 (1275)
Q Consensus 721 i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~ 799 (1275)
|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||+||+.|....+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999876 348999999987643 223567999999999999999999999875432 12334
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-
Q 000808 800 TQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 878 (1275)
Q Consensus 800 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~- 878 (1275)
+.+++++++++.++|.+..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 45567889999999988777765 479999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCC
Q 000808 879 GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 879 g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 916 (1275)
|+|||++||+++ ++...+|++++|++ |+++..|+++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 899999999985 67788999999986 7999999874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=301.46 Aligned_cols=200 Identities=24% Similarity=0.317 Sum_probs=156.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999887 9999999988754321 3469999999999999999999998654221
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. .. ... . ... ...+....++++++.+||++..+ +.++.|||||||||+||
T Consensus 105 ~~-~~------~~~---~---~~~-----------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la 155 (236)
T cd03219 105 GS-GL------LLA---R---ARR-----------EEREARERAEELLERVGLADLAD-----RPAGELSYGQQRRLEIA 155 (236)
T ss_pred cc-cc------ccc---c---ccc-----------cHHHHHHHHHHHHHHcCccchhh-----CChhhCCHHHHHHHHHH
Confidence 00 00 000 0 000 00011223567888999976544 34567999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||+.+|++++|||||+|||+.++.++.+.++++.+ . +.+|+.++|+.+++.+++|++++|++|++++.|+++++.
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999998754 3 455666888888999999999999999999999887753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=308.01 Aligned_cols=192 Identities=24% Similarity=0.356 Sum_probs=155.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDV-HIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++. .+...||+||+.|+...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 47999999999999999999999987 99999999987542 22467999999853 34467999999986532
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCc--cccccccCCCccccccccccch
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE--VCDDTLVGDEMVRGISGGQKKR 152 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqrqR 152 (1275)
.+.. .++....++++++.+||+ +.. ++.++.||||||||
T Consensus 112 ~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~~LSgGq~qr 152 (287)
T PRK13637 112 LGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYK-----DKSPFELSGGQKRR 152 (287)
T ss_pred CCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhc-----cCCcccCCHHHHHH
Confidence 2110 001122356788999996 333 35567899999999
Q ss_pred hhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhh
Q 000808 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1275)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~ 232 (1275)
++|||||+.+|++|+|||||+|||+.++.++.+.++++.+. .+++|++++|+.+++..+||||++|++|++++.|++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999987653 35666778898889999999999999999999999988
Q ss_pred HHH
Q 000808 233 VLD 235 (1275)
Q Consensus 233 ~~~ 235 (1275)
+.+
T Consensus 232 ~~~ 234 (287)
T PRK13637 232 VFK 234 (287)
T ss_pred HHh
Confidence 743
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=313.93 Aligned_cols=191 Identities=24% Similarity=0.293 Sum_probs=158.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCc----cCCCcc------c-cceEEEeccccccCCCCCHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH----GMDEFV------P-QRTAAYISQHDVHIGEMTVRETLA 69 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~----~~~~~~------~-~~~~~yv~Q~~~~~~~lTv~e~l~ 69 (1275)
+++|+||||||||||+++|+|+++|+ +|+|.++|+ ++.... . ++.++||+|++.+++.+||+||+.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 47999999999999999999999987 999999996 332221 1 247999999999999999999999
Q ss_pred HHHhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccc
Q 000808 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQ 149 (1275)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1275)
++....+... .+....++++++.+||++..+. .+..|||||
T Consensus 129 ~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~~~~-----~~~~LSgGq 169 (382)
T TIGR03415 129 FGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQWADK-----KPGELSGGM 169 (382)
T ss_pred HHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHH
Confidence 9765332100 0111235678899999766554 455799999
Q ss_pred cchhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecC
Q 000808 150 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1275)
Q Consensus 150 rqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~ 229 (1275)
||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.+.. +++|++++|+.+++.+++|+|++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999876533 4566668999999999999999999999999999
Q ss_pred hhhHH
Q 000808 230 RELVL 234 (1275)
Q Consensus 230 ~~~~~ 234 (1275)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 98875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=296.17 Aligned_cols=200 Identities=21% Similarity=0.236 Sum_probs=157.7
Q ss_pred eeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000808 705 LLNGVSGAFR-----PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779 (1275)
Q Consensus 705 iL~~vs~~i~-----~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 779 (1275)
.++|++++++ +||+++|+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5666666665 799999999999999999999999865 34799999874 4799999987777899
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000808 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859 (1275)
Q Consensus 780 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsg 859 (1275)
|+|++.+...... . .....+++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999875432110 0 1123578899999987777665 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEE--EECCCCccchHHHHHHhcC
Q 000808 860 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI--YVGPLGRHSCHLIRYFEGI 929 (1275)
Q Consensus 860 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~--~~g~~~~~~~~~~~~f~~~ 929 (1275)
||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++|.+ +..+ ..+++......+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 9999999999999998754 899999999975 46668999999974 3222 3444443333455566544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=298.18 Aligned_cols=180 Identities=24% Similarity=0.341 Sum_probs=147.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||.||+.++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 47999999999999999999999887 999999998774321 245799999999889999999999986543
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. . ++....++++++.+||++..+. .+.+|||||||||+
T Consensus 108 ~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 108 IGVP----------P------------------------RDANERVSAALEKVGLEGKAHA-----LPMQLSGGEQQRVA 148 (216)
T ss_pred cCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHH
Confidence 2110 0 0011234667888999765544 44579999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeE
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i 224 (1275)
|||||+.+|++++|||||+|||+.++.++.+.++++.+ . +.+|++++|+.+++..+||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998754 3 45566688888899999999999999975
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=299.33 Aligned_cols=189 Identities=21% Similarity=0.349 Sum_probs=154.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 47999999999999999999999887 999999998765432 12469999999999999999999988643221
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. . .+....++.+++.+||++..++ .++.|||||||||+||
T Consensus 105 ~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 145 (232)
T cd03218 105 LS----------K------------------------KEREEKLEELLEEFHITHLRKS-----KASSLSGGERRRVEIA 145 (232)
T ss_pred CC----------H------------------------HHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHH
Confidence 00 0 0011234667888898765544 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
||++.+|++++|||||+|||+.++.++.+.+++..+ . +.+|++++|+.+++.+++|++++|++|++++.|+.+++
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999998754 2 45566688888899999999999999999999987765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-32 Score=270.62 Aligned_cols=218 Identities=24% Similarity=0.312 Sum_probs=181.9
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcC-c
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-Y 754 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g-~ 754 (1275)
..+..+|++.+.+ ...+|+|+||++.|||+-+|+|||||||||++++|+|...+ ..|++.++| .
T Consensus 4 ~iL~~~~vsVsF~-------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~ 68 (249)
T COG4674 4 IILYLDGVSVSFG-------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDT 68 (249)
T ss_pred ceEEEeceEEEEc-------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCch
Confidence 3577888887763 46799999999999999999999999999999999997653 479999999 5
Q ss_pred cCCcc----cccceEEEeccCCCCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000808 755 PKKQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-----EVDSETQKMFIEEIMELVELNPLRQSLVGLP 825 (1275)
Q Consensus 755 ~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 825 (1275)
++... ..+.-+|--+|.|..|+.+||+|||..+..-..+- .....+.+++++++|+..||.+.++...+
T Consensus 69 dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh--
Confidence 55431 22445788899999999999999999874321110 01122345679999999999999988865
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeec
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 905 (1275)
.||.||||++.|++.++++|++|+||||++|+-.+.....-++|+.++. +++|+++-||.. -+-+++|+|.+|++
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~ 221 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE 221 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec
Confidence 5999999999999999999999999999999999999999999999975 689999999976 46678999999997
Q ss_pred CcEEEEECCCC
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 gg~~~~~g~~~ 916 (1275)
|.+...|+.+
T Consensus 222 -G~VL~EGsld 231 (249)
T COG4674 222 -GSVLAEGSLD 231 (249)
T ss_pred -cceeecccHH
Confidence 7999999864
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=299.55 Aligned_cols=191 Identities=25% Similarity=0.336 Sum_probs=156.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999999875421 145799999999999999999999886542
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. . .+....++++++.+||++..+. .+..|||||||||+
T Consensus 110 ~~~~-------~---------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ 150 (233)
T cd03258 110 AGVP-------K---------------------------AEIEERVLELLELVGLEDKADA-----YPAQLSGGQKQRVG 150 (233)
T ss_pred cCCC-------H---------------------------HHHHHHHHHHHHHCCChhhhhc-----ChhhCCHHHHHHHH
Confidence 2100 0 0011134567888999765543 45679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||||++.+|++++|||||+|||+.++..+.+.++++.+. ++++|++++|+.+++.+++|++++|++|++++.|+++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999987543 2456666788888899999999999999999999877653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-32 Score=295.86 Aligned_cols=185 Identities=27% Similarity=0.367 Sum_probs=151.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.. .++.++|++|++.+++.+||+||+.++....+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 104 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP-- 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCC--
Confidence 47999999999999999999999887 9999999987753 3467999999988888899999999865432110
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
. .+....++.+++.+||++..+. .+..||||||||++|||||+
T Consensus 105 -----~---------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~la~al~ 147 (220)
T cd03293 105 -----K---------------------------AEARERAEELLELVGLSGFENA-----YPHQLSGGMRQRVALARALA 147 (220)
T ss_pred -----H---------------------------HHHHHHHHHHHHHcCChhhhhC-----CcccCCHHHHHHHHHHHHHH
Confidence 0 0011234667888999765544 34579999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEec--CCeEEEecCh
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DAQIVYQGPR 230 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~--~G~i~~~G~~ 230 (1275)
.+|++++|||||+|||+.++..+.+.+++..+.. +++|++++|+.+++.+.+|++++|+ +|++++.++.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRET-GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999875433 4556667888888999999999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=314.83 Aligned_cols=185 Identities=24% Similarity=0.360 Sum_probs=156.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 47999999999999999999999987 99999999886431 224679999999999999999999988532
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
. . ....++++++.+||++..+ +.+++|||||||||
T Consensus 103 ~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qRv 137 (352)
T PRK11144 103 K-----------S-----------------------------MVAQFDKIVALLGIEPLLD-----RYPGSLSGGEKQRV 137 (352)
T ss_pred h-----------h-----------------------------hHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHH
Confidence 0 0 0112456788899976554 44568999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+++.++|+.+++..++|++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999999876533 45566688988999999999999999999999999887
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 217 ~ 217 (352)
T PRK11144 217 W 217 (352)
T ss_pred H
Confidence 5
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-32 Score=294.61 Aligned_cols=183 Identities=26% Similarity=0.367 Sum_probs=150.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+||+.+.....+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~- 102 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKK- 102 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCCh-
Confidence 47999999999999999999999887 9999999987653 335679999999988888999999988654321100
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
.+....++++++.+||++..++ .+++|||||||||+||+|++
T Consensus 103 ---------------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 103 ---------------------------------EEARRRIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ---------------------------------HHHHHHHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHh
Confidence 0011235667888999765554 35579999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
.+|++++|||||+|||+.++..+.+.++++.+ . +.+|++++|+.+++.+++|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998754 2 456666888888999999999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=297.44 Aligned_cols=201 Identities=19% Similarity=0.334 Sum_probs=157.2
Q ss_pred CCCCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEE
Q 000808 672 PFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 751 (1275)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~ 751 (1275)
+..+..++++|+++. . +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+
T Consensus 34 ~~~~~~l~i~nls~~-~--------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i 96 (282)
T cd03291 34 SSDDNNLFFSNLCLV-G--------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKH 96 (282)
T ss_pred CCCCCeEEEEEEEEe-c--------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 334567999999874 1 2599999999999999999999999999999999998763 4799999
Q ss_pred cCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccC
Q 000808 752 SGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ-------SLVGL 824 (1275)
Q Consensus 752 ~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~ 824 (1275)
+| .++|++|++.+++. |++||+.+.... ... .+.+.++.+++.+..+ +.++.
T Consensus 97 ~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 97 SG----------RISFSSQFSWIMPG-TIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred CC----------EEEEEeCccccccc-CHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC
Confidence 87 27999999888774 999999764211 111 1233444444433221 12211
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHhhCCCEEEEEecCCCHHHHHhhhhhhee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 903 (1275)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||+++|+++. ...+|++++|
T Consensus 156 -~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~--~~~~d~i~~l 231 (282)
T cd03291 156 -GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH--LKKADKILIL 231 (282)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH--HHhCCEEEEE
Confidence 23579999999999999999999999999999999999999998865 4554 47999999999863 3679999999
Q ss_pred ecCcEEEEECCC
Q 000808 904 KRGGQEIYVGPL 915 (1275)
Q Consensus 904 ~~gg~~~~~g~~ 915 (1275)
++ |++++.|+.
T Consensus 232 ~~-G~i~~~g~~ 242 (282)
T cd03291 232 HE-GSSYFYGTF 242 (282)
T ss_pred EC-CEEEEECCH
Confidence 86 789999986
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=309.25 Aligned_cols=191 Identities=26% Similarity=0.373 Sum_probs=151.8
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 2 ~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+||+|+|||||||++++|.+..+ . +|+|.+||.++.+.. .|+.||||||+..+| +.||.+||.++..-.
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~sa--- 452 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPSA--- 452 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCCc---
Confidence 69999999999999999999988 3 899999999986654 467899999987766 559999999964311
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
..+.+.+. .+..++ .+. ...|+++.+|.||+++. .|||||||||+||||
T Consensus 453 -s~eeV~e~---~k~a~~------------------------hd~--i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 453 -SDEEVVEA---CKRAGL------------------------HDV--ISRLPDGYQTLVGERGL-MLSGGEKQRVSLARA 501 (591)
T ss_pred -CHHHHHHH---HHHcCc------------------------HHH--HHhccccchhhHhhccc-ccccchHHHHHHHHH
Confidence 11111111 111111 111 23489999999997654 699999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
++.+|+|+++|||||+||+++..++++.+.+. ..++| ++.+.|+. ...+.||+|++|++|++.+.|++++++.
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rT-vI~IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRT-VIMIVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCe-EEEEEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999999999883 23444 44466665 4677899999999999999999999875
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=294.58 Aligned_cols=183 Identities=27% Similarity=0.388 Sum_probs=150.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999887 99999999876532 22467999999999999999999999865432110
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+....++.+++.+||++..++. +..|||||||||+||||
T Consensus 104 ----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~a 144 (211)
T cd03264 104 ----------S------------------------KEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGIAQA 144 (211)
T ss_pred ----------H------------------------HHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHHHHH
Confidence 0 00112346678888997655544 45799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
|+.+|++++|||||+|||+.++.++.+.+++.++ + .++++++|+.+++.+++|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 3 56666889888999999999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-32 Score=334.37 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=166.8
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++ +++++|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 321 ~~i~~~~v~f~y~------------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 386 (547)
T PRK10522 321 QTLELRNVTFAYQ------------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKP 386 (547)
T ss_pred ceEEEEEEEEEeC------------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 4699999999984 12359999999999999999999999999999999999876 358999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 832 (1275)
... ..+++.++|++|++.+++ .|++|| . .. ..++.+++.++.+++.+..+...|.....+|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 753 345678999999987765 466665 0 11 223456788888888764432111111357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecCcEEEE
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIY 911 (1275)
Q Consensus 833 Gerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 911 (1275)
|||||++|||||+++|++|+||||||+||++++..+.+.+.+..+ .|+|+|+++|+++ ....+|++++|++ |+++.
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e 529 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 529 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999976643 5899999999974 5778999999997 56665
Q ss_pred EC
Q 000808 912 VG 913 (1275)
Q Consensus 912 ~g 913 (1275)
..
T Consensus 530 ~~ 531 (547)
T PRK10522 530 LT 531 (547)
T ss_pred ec
Confidence 53
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=307.23 Aligned_cols=206 Identities=24% Similarity=0.343 Sum_probs=161.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEecccc--ccCCCCCHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHD--VHIGEMTVRETLAFS 71 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTv~e~l~f~ 71 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .++ ..||.||+.|+
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~ 109 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFG 109 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhH
Confidence 47999999999999999999999987 99999999987421 1246799999985 444 46999999987
Q ss_pred HhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCcc-ccccccCCCcccccccccc
Q 000808 72 ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVGDEMVRGISGGQK 150 (1275)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqr 150 (1275)
....+.. . .+....+++.++.+||.+ ..+ +.++.||||||
T Consensus 110 ~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSgGqk 150 (288)
T PRK13643 110 PQNFGIP----------K------------------------EKAEKIAAEKLEMVGLADEFWE-----KSPFELSGGQM 150 (288)
T ss_pred HHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhcc-----CCcccCCHHHH
Confidence 5432110 0 011123566788889853 333 45678999999
Q ss_pred chhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecCh
Q 000808 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~ 230 (1275)
||++|||+|+.+|++++|||||+|||+.++..+.+.++++.+ . +.+|++++|+.+++..+||+|++|++|++++.|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998754 3 55666788888899999999999999999999999
Q ss_pred hhHHH---HHHhCCCCCCCCCChh
Q 000808 231 ELVLD---FFESMGFKCPERKGVA 251 (1275)
Q Consensus 231 ~~~~~---~f~~~G~~~p~~~~~a 251 (1275)
+++.+ .+...|+.+|.....+
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred HHHHcCHHHHHHcCCCCChHHHHH
Confidence 88743 3445566665543333
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-32 Score=298.80 Aligned_cols=189 Identities=22% Similarity=0.312 Sum_probs=152.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCC-----CCCCceeEEEEECCccCCCcc-----ccceEEEeccccccCCCCCHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKL-----DSKLKFSGRVTYNGHGMDEFV-----PQRTAAYISQHDVHIGEMTVRETLAF 70 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~-----~~~~~~~G~v~~~g~~~~~~~-----~~~~~~yv~Q~~~~~~~lTv~e~l~f 70 (1275)
+++|+||||||||||+++|+|.+ +|. +|+|.++|+++.... .++.++|++|++.++ .+||+||+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 47999999999999999999998 776 899999998875322 245799999998877 8999999988
Q ss_pred HHhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCcccccccccc
Q 000808 71 SARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1275)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1275)
+....+... . .+....++++++.+||.+..+.... +.+||||||
T Consensus 104 ~~~~~~~~~------~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~ 147 (227)
T cd03260 104 GLRLHGIKL------K---------------------------EELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQ 147 (227)
T ss_pred HHHhcCCCc------H---------------------------HHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHH
Confidence 654321000 0 0011234567888899765443320 468999999
Q ss_pred chhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecCh
Q 000808 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~ 230 (1275)
||++|||||+.+|++++|||||+|||+.++.++.+.|++..+ + ++|++++|+.+++.++||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 999999999999999999999999999999999999998754 3 5666688888899999999999999999999987
Q ss_pred hh
Q 000808 231 EL 232 (1275)
Q Consensus 231 ~~ 232 (1275)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 64
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-32 Score=310.82 Aligned_cols=188 Identities=28% Similarity=0.349 Sum_probs=156.3
Q ss_pred EeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCCcch
Q 000808 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYD 82 (1275)
Q Consensus 4 ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~ 82 (1275)
|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.|+.+..+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999987 999999998875432 2467999999999999999999999975432110
Q ss_pred hhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHhcC
Q 000808 83 MLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGP 162 (1275)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~~~ 162 (1275)
. .+....++++++.+||++..+ +.+..|||||||||+|||||+.+
T Consensus 74 ------~------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 ------R------------------------AEIKPRVLEALRLVQLEEFAD-----RKPHQLSGGQQQRVALARALVFK 118 (325)
T ss_pred ------H------------------------HHHHHHHHHHHHHcCCcchhc-----CChhhCCHHHHHHHHHHHHHHhC
Confidence 0 001123566788899976554 44568999999999999999999
Q ss_pred CeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 163 ALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 163 p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|++++|||||+|||+.++.++.+.|+++.+.. +++++.++|+.+++..++|+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999876543 455666888889999999999999999999999988874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-32 Score=293.55 Aligned_cols=185 Identities=29% Similarity=0.409 Sum_probs=150.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++..||+||+.++....+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~- 103 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP- 103 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC-
Confidence 47899999999999999999999887 999999998875432 2357999999988888999999998865432100
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
. ++....++++++.+||.+..+. .++.||||||||++||||+
T Consensus 104 ---------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr~~laral 145 (213)
T cd03301 104 ---------K------------------------DEIDERVREVAELLQIEHLLDR-----KPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred ---------H------------------------HHHHHHHHHHHHHcCCHHHHhC-----ChhhCCHHHHHHHHHHHHH
Confidence 0 0011234667888999765554 4457999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
+.+|++++|||||+|||+.++.++.+.++++++.. +.+|++++|+.+++.+++|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999876533 455666788888999999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-32 Score=313.78 Aligned_cols=189 Identities=24% Similarity=0.400 Sum_probs=157.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 47999999999999999999999987 99999999887432 124679999999999999999999998643
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
... . .+....++++++.+||++..+ +.+..|||||||||
T Consensus 102 ~~~---------~---------------------------~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGqkqRv 140 (354)
T TIGR02142 102 RAR---------P---------------------------SERRISFERVIELLGIGHLLG-----RLPGRLSGGEKQRV 140 (354)
T ss_pred ccC---------h---------------------------hHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHH
Confidence 110 0 001123566788999976554 44567999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +.++++++|+.+++..++|++++|++|++++.|+++++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999999999999876533 45566688888999999999999999999999998876
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 220 ~ 220 (354)
T TIGR02142 220 W 220 (354)
T ss_pred h
Confidence 4
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-32 Score=296.29 Aligned_cols=188 Identities=30% Similarity=0.429 Sum_probs=154.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999887432 22456999999988888999999998865432110
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+....++++++.+||++..++. +..||||||||++||||
T Consensus 107 ----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 107 ----------K------------------------SEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred ----------H------------------------HHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHH
Confidence 0 00111245678888997665544 45799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
++.+|++++|||||+|||+.++.++.+.|++..+ + .+++.++|+.+++.+.+|++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998743 3 5666688888889999999999999999999987654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-32 Score=298.79 Aligned_cols=199 Identities=25% Similarity=0.345 Sum_probs=155.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 47999999999999999999999886 899999998875432 245799999999889999999999875321
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.. ... .... .. ...+....++++++.+||++..+ +.+..|||||||||+
T Consensus 106 ~~--~~~---~~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ 154 (241)
T cd03256 106 RR--STW---RSLF------GL---------------FPKEEKQRALAALERVGLLDKAY-----QRADQLSGGQQQRVA 154 (241)
T ss_pred cc--hhh---hhhc------cc---------------CcHHHHHHHHHHHHHcCChhhhC-----CCcccCCHHHHHHHH
Confidence 00 000 0000 00 00011123566788899975444 345689999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+.+++.+++|++++|++|++++.|+++++.
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999999876433 455666888888999999999999999999999887753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-32 Score=295.24 Aligned_cols=188 Identities=23% Similarity=0.389 Sum_probs=151.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 47999999999999999999999987 999999998775432 13569999999999999999999988643211
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHh-CCccccccccCCCccccccccccchhhH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVL-GLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1275)
. .+ ....++.+++.+ ++++..+ +.++.||||||||++|
T Consensus 105 ---~----~~-----------------------------~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrv~l 143 (222)
T cd03224 105 ---R----AK-----------------------------RKARLERVYELFPRLKERRK-----QLAGTLSGGEQQMLAI 143 (222)
T ss_pred ---c----hh-----------------------------HHHHHHHHHHHHHhhhhhhh-----CchhhCCHHHHHHHHH
Confidence 0 00 001123445555 3554443 3456799999999999
Q ss_pred HHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||||+.+|++++|||||+|||+.++..+.+.|++..+ .+.+|++++|+.+++.+.+|++++|++|++++.|+.+++.
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999999998754 3456666788888999999999999999999999877653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=338.73 Aligned_cols=192 Identities=24% Similarity=0.347 Sum_probs=151.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
.+||+||||||||||+++|+|.+ |. +|+|.+||.++++.. .++.++||+|++.+|+ .|++|||.++.+-
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~~--- 449 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNPD--- 449 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCCC---
Confidence 37999999999999999999999 86 899999999887654 3578999999988775 5999999985210
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
.+.++..+++... ..++.++ .|+++.||.||++ +.+||||||||++|||
T Consensus 450 ----------------------~~~eei~~al~~a------~l~~~i~--~lp~G~dT~vge~-G~~LSGGQrQRialAR 498 (588)
T PRK11174 450 ----------------------ASDEQLQQALENA------WVSEFLP--LLPQGLDTPIGDQ-AAGLSVGQAQRLALAR 498 (588)
T ss_pred ----------------------CCHHHHHHHHHHh------CHHHHHH--hcccccccccccC-CCCCCHHHHHHHHHHH
Confidence 0011111111100 0122222 3788999999976 5589999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|++++|+|++||||||+||+.++..+.+.+++.. .++|+|+ ++|.. +..+.+|+|++|++|++++.|+++++.+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIi-ItHrl-~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLM-VTHQL-EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEE-EecCh-HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999998763 2455555 55554 4567799999999999999999999864
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=308.10 Aligned_cols=194 Identities=21% Similarity=0.221 Sum_probs=158.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHD--VHIGEMTVRETLAFSA 72 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1275)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++ .+++.+||.||+.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999886 999999999876432 245799999997 5788999999999865
Q ss_pred hccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccch
Q 000808 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKR 152 (1275)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1275)
...... .. ..+....++++++.+||.. .+.++.++.||||||||
T Consensus 126 ~~~~~~--------~~------------------------~~~~~~~~~~~l~~vgl~~----~~~~~~p~~LSgG~~QR 169 (331)
T PRK15079 126 RTYHPK--------LS------------------------RQEVKDRVKAMMLKVGLLP----NLINRYPHEFSGGQCQR 169 (331)
T ss_pred HHhccC--------CC------------------------HHHHHHHHHHHHHHcCCCh----HHhcCCcccCCHHHHHH
Confidence 422100 00 0011223567788999942 12345677899999999
Q ss_pred hhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhh
Q 000808 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1275)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~ 232 (1275)
|+|||||+.+|++|++||||+|||+.++.++.+.|+++.+. .+.++++++|+...+.+++|+|++|++|++++.|+.++
T Consensus 170 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~ 248 (331)
T PRK15079 170 IGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE 248 (331)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999987653 35667778999999999999999999999999999888
Q ss_pred HH
Q 000808 233 VL 234 (1275)
Q Consensus 233 ~~ 234 (1275)
+.
T Consensus 249 i~ 250 (331)
T PRK15079 249 VY 250 (331)
T ss_pred HH
Confidence 75
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-32 Score=295.41 Aligned_cols=184 Identities=30% Similarity=0.411 Sum_probs=150.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999887532 22467999999998899899999998754322110
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+....++++++.+||++..+. .++.||||||||++||||
T Consensus 110 ----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lara 150 (218)
T cd03266 110 ----------G------------------------DELTARLEELADRLGMEELLDR-----RVGGFSTGMRQKVAIARA 150 (218)
T ss_pred ----------H------------------------HHHHHHHHHHHHHcCCHHHHhh-----hhhhcCHHHHHHHHHHHH
Confidence 0 0011235668888999765543 456799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
++.+|++++|||||+|||+.++..+.+.|+++.+ . +.++++++|+.+++.+.+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 3 455666888888999999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=304.49 Aligned_cols=191 Identities=21% Similarity=0.299 Sum_probs=154.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDV-HIGEMTVRETLAFSA 72 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++. .+...||+||+.|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 47999999999999999999999987 99999999987421 12357999999852 333579999999865
Q ss_pred hccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCc-cccccccCCCccccccccccc
Q 000808 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKK 151 (1275)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1275)
...+.. ..+....++++++.+||+ ...+ +.++.|||||||
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~q 152 (290)
T PRK13634 112 MNFGVS----------------------------------EEDAKQKAREMIELVGLPEELLA-----RSPFELSGGQMR 152 (290)
T ss_pred HHcCCC----------------------------------HHHHHHHHHHHHHHCCCChhhhh-----CCcccCCHHHHH
Confidence 422110 001112356788999996 3344 445679999999
Q ss_pred hhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
||+|||||+.+|++++|||||+|||+.++.++.+.|+++.+. .+.+|++++|+.+++.+.||||++|++|++++.|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987653 3556667899999999999999999999999999988
Q ss_pred hHH
Q 000808 232 LVL 234 (1275)
Q Consensus 232 ~~~ 234 (1275)
++.
T Consensus 232 ~~~ 234 (290)
T PRK13634 232 EIF 234 (290)
T ss_pred HHh
Confidence 764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=297.74 Aligned_cols=191 Identities=25% Similarity=0.374 Sum_probs=155.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999887 899999998765422 245799999999999999999999886443210
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCcc--ccccccCCCccccccccccchhhH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV--CDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqrqRvsi 155 (1275)
. . .+....+.++++.+||+. .. ++.+..|||||||||+|
T Consensus 106 ~----------~------------------------~~~~~~~~~~l~~l~l~~~~~~-----~~~~~~LS~G~~qrv~l 146 (242)
T cd03295 106 P----------K------------------------EKIRERADELLALVGLDPAEFA-----DRYPHELSGGQQQRVGV 146 (242)
T ss_pred C----------H------------------------HHHHHHHHHHHHHcCCCcHHHH-----hcChhhCCHHHHHHHHH
Confidence 0 0 001123456788899974 33 34566899999999999
Q ss_pred HHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||++.+|++++|||||+|||+.++..+.+.|++..+. .+++|++++|+.+++.+++|+|++|++|++++.|+++++.
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999987643 2456666788888899999999999999999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-32 Score=291.90 Aligned_cols=177 Identities=27% Similarity=0.343 Sum_probs=144.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccc-cCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDV-HIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||+||+.++.....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--- 101 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD--- 101 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC---
Confidence 47999999999999999999999887 9999999988754334567999999864 3456799999987542110
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
+....++++++.+||.+..++ .+..||||||||++|||||
T Consensus 102 -----------------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral 141 (205)
T cd03226 102 -----------------------------------AGNEQAETVLKDLDLYALKER-----HPLSLSGGQKQRLAIAAAL 141 (205)
T ss_pred -----------------------------------ccHHHHHHHHHHcCCchhcCC-----CchhCCHHHHHHHHHHHHH
Confidence 000124567888999765554 4557999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEE
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~ 225 (1275)
+.+|++++|||||+|||+.++..+.+.|++..+ . +.+|+.++|+.+++.+++|++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999998754 3 455666788888899999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-32 Score=294.84 Aligned_cols=180 Identities=25% Similarity=0.350 Sum_probs=145.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-------PQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 47999999999999999999999887 999999998875432 13579999999999999999999998654
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+.. . .+....++++++.+||++..+ +.++.|||||||||
T Consensus 109 ~~~~~-------~---------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 149 (218)
T cd03255 109 LAGVP-------K---------------------------KERRERAEELLERVGLGDRLN-----HYPSELSGGQQQRV 149 (218)
T ss_pred hcCCC-------H---------------------------HHHHHHHHHHHHHcCCchhhh-----cChhhcCHHHHHHH
Confidence 32110 0 001123566788899976544 34567999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeE
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i 224 (1275)
+|||||+.+|++++|||||+|||+.++.++.+.++++.+.. +.+|++++|+.+++. .||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA-GTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999999999999876432 455566777777776 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-32 Score=291.45 Aligned_cols=180 Identities=25% Similarity=0.354 Sum_probs=148.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-cccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-- 102 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-- 102 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--
Confidence 47999999999999999999999887 99999999876432 2245799999998889999999999886432110
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
....++++++.+||++..++ .++.|||||||||+||||+
T Consensus 103 ------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al 141 (208)
T cd03268 103 ------------------------------------RKKRIDEVLDVVGLKDSAKK-----KVKGFSLGMKQRLGIALAL 141 (208)
T ss_pred ------------------------------------cHHHHHHHHHHcCCHHHHhh-----hHhhCCHHHHHHHHHHHHH
Confidence 00124557888888765544 4557999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
+.+|++++|||||+|||+.++..+.+.+++..+ . +.++++++|+.+++.+.+|++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998754 3 455666788888999999999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=329.98 Aligned_cols=219 Identities=23% Similarity=0.337 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|++.+||.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 48899999887411 112469999999999999999999999999999999999876 3489999999876
Q ss_pred Ccc---c----ccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000808 757 KQE---T----FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1275)
Q Consensus 757 ~~~---~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 829 (1275)
... . .++.++|++|+..+++.+|+.||+.+..... .....+.++++.++++.+|+.+..|... ..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 431 1 1457899999999999999999998764322 1233455667889999999988777765 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEE
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 830 lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 909 (1275)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ..+.+|++++|++ |++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998777999999999975 4567999999986 799
Q ss_pred EEECCCCc
Q 000808 910 IYVGPLGR 917 (1275)
Q Consensus 910 ~~~g~~~~ 917 (1275)
+..|+.++
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99998853
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=313.94 Aligned_cols=194 Identities=24% Similarity=0.397 Sum_probs=158.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++||+|++.+++.+||+||+.++..-..
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~- 106 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR- 106 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc-
Confidence 47999999999999999999999987 999999998876532 24679999999988889999999998532100
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
.++.. . ..+....+++.++.+||.+..++ .++.|||||||||+|||
T Consensus 107 -~~~~~---~-------------------------~~~~~~~v~~~le~vgl~~~~~~-----~~~~LSgGerQRv~IAr 152 (402)
T PRK09536 107 -SRFDT---W-------------------------TETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLAR 152 (402)
T ss_pred -ccccC---C-------------------------CHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHH
Confidence 00000 0 00112245778899999766554 45679999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|++++|+.+++.++|||+++|++|++++.|+++++.
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999864 3 456666899999999999999999999999999998764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=269.52 Aligned_cols=193 Identities=28% Similarity=0.398 Sum_probs=155.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
|++|+|||||||||||+.|+|++.|+ +|++.+||.+++.... .+.-+..||+..+-...||+|.+.++..=.+.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 57999999999999999999999998 9999999999866433 24568999998887778999999997542211
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
+.. ..+...+.+..|...++...+. +....|||||||||.+||
T Consensus 106 g~~--------------------------------~~e~~~i~~~ala~~d~~~la~-----R~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 106 GRE--------------------------------PEEDERIAAQALAATDLSGLAG-----RDYRTLSGGEQQRVQLAR 148 (259)
T ss_pred CCC--------------------------------chhhHHHHHHHHHHcChhhhhc-----cchhhcCchHHHHHHHHH
Confidence 100 0112223455666666665443 445689999999999999
Q ss_pred HHhc------CCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 158 MMVG------PALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 158 al~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
.|+. ++++||||||||+||....+++++..+++++. +..|+.+.|+.+-+..+||||++|.+||++.+|+++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 9985 34599999999999999999999999999874 344555889999999999999999999999999998
Q ss_pred hHHH
Q 000808 232 LVLD 235 (1275)
Q Consensus 232 ~~~~ 235 (1275)
++..
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 8753
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=300.26 Aligned_cols=189 Identities=24% Similarity=0.304 Sum_probs=153.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||.||+.|+....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 47999999999999999999999987 999999998875432 2357999999863 4556899999998643211
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. . .+....++.+++.+||.+..+. .+..|||||||||+||
T Consensus 110 ~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgG~~qrv~la 150 (274)
T PRK13647 110 LD----------K------------------------DEVERRVEEALKAVRMWDFRDK-----PPYHLSYGQKKRVAIA 150 (274)
T ss_pred CC----------H------------------------HHHHHHHHHHHHHCCCHHHhcC-----ChhhCCHHHHHHHHHH
Confidence 10 0 0011234667888999765544 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
|||+.+|++++|||||+|||+.++.++.+.+++++. . +.+|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999998754 3 45666688999899999999999999999999998654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=305.97 Aligned_cols=189 Identities=23% Similarity=0.372 Sum_probs=152.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------------------cccceEEEecccc--ccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------------------VPQRTAAYISQHD--VHI 59 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------------------~~~~~~~yv~Q~~--~~~ 59 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 47999999999999999999999987 99999999876432 1246799999986 455
Q ss_pred CCCCHHHHHHHHHhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCcc-ccccccC
Q 000808 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVG 138 (1275)
Q Consensus 60 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg 138 (1275)
+ .||+||+.|+....+.. ..+....++++++.+||+. ..
T Consensus 131 ~-~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~----- 170 (320)
T PRK13631 131 K-DTIEKDIMFGPVALGVK----------------------------------KSEAKKLAKFYLNKMGLDDSYL----- 170 (320)
T ss_pred c-chHHHHHHhhHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHh-----
Confidence 4 59999998864321100 0011123556788899963 23
Q ss_pred CCccccccccccchhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEE
Q 000808 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 218 (1275)
Q Consensus 139 ~~~~~~LSGGqrqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~ 218 (1275)
++.+.+|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.++++.. . +++|++++|+.+++...||+|++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998754 3 55666688888889999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000808 219 LSDAQIVYQGPRELVL 234 (1275)
Q Consensus 219 l~~G~i~~~G~~~~~~ 234 (1275)
|++|++++.|+++++.
T Consensus 249 l~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 249 MDKGKILKTGTPYEIF 264 (320)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=299.85 Aligned_cols=192 Identities=21% Similarity=0.331 Sum_probs=155.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||.||+.+....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999887 999999998775321 245699999998888999999999885421
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.. ..+ . .+....++.+++.+||++..+. .+..|||||||||+
T Consensus 112 ~~---~~~------~------------------------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~ 153 (269)
T PRK11831 112 HT---QLP------A------------------------PLLHSTVMMKLEAVGLRGAAKL-----MPSELSGGMARRAA 153 (269)
T ss_pred cc---CCC------H------------------------HHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHH
Confidence 10 000 0 0011224567888999765554 34579999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|++++|||||+|||+.++..+.+.++++.+. ++.+|++++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999987543 2456666888888999999999999999999999987764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=293.39 Aligned_cols=186 Identities=23% Similarity=0.298 Sum_probs=149.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999887 9999999988754321 2469999999888999999999998654
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+.. . .+.+..++++++.+||++..++ .+..||||||||+
T Consensus 114 ~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrl 154 (233)
T PRK11629 114 IGKKK----------P------------------------AEINSRALEMLAAVGLEHRANH-----RPSELSGGERQRV 154 (233)
T ss_pred hcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 22100 0 0011234667889999765543 4567999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecCh
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~ 230 (1275)
+||||++.+|++++|||||+|||+.++.++.+.+++..+. ++++|+.++|+.+++.. +|++++|++|++++.|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999987543 34556667888877766 589999999999988853
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=288.09 Aligned_cols=193 Identities=19% Similarity=0.180 Sum_probs=152.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEE-EcCccCCcccccceEEEeccCCCCCCCCCHHHH
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-ISGYPKKQETFTRISGYCEQNDIHSPFVTVYES 783 (1275)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~ 783 (1275)
+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|. ++|... .+.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 79999999999999999999999999999999997653 478886 666422 12345667889999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000808 784 LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863 (1275)
Q Consensus 784 l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~ 863 (1275)
+.+...... ...++. .+.+.+.+++.+..++.+ +.||||||||++||++|+.+|++++|||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 988655431 222222 233445667777666665 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECCCCccchHHHHHHh
Q 000808 864 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFE 927 (1275)
Q Consensus 864 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~f~ 927 (1275)
++..+.+.+.+..+ ++|+|+++|+++ .+...+|++++|.+ |++++.|+.. .+.++++
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~----~~~~~~~ 195 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA----QATALFE 195 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH----HHHHHHH
Confidence 99999998865443 468999999986 46678999999985 7999999873 4455544
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=305.33 Aligned_cols=190 Identities=22% Similarity=0.311 Sum_probs=153.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC---------------------------ccccceEEEec
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE---------------------------FVPQRTAAYIS 53 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~---------------------------~~~~~~~~yv~ 53 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ...++.+|||+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 47999999999999999999999987 8999999875421 11245799999
Q ss_pred ccc-ccCCCCCHHHHHHHHHhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCc-c
Q 000808 54 QHD-VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-V 131 (1275)
Q Consensus 54 Q~~-~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~ 131 (1275)
|++ ..+...||+||+.|+....+.. .++....++++++.+||+ +
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVS----------------------------------KEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChh
Confidence 985 3445679999999865432110 001112356788999996 3
Q ss_pred ccccccCCCccccccccccchhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHh
Q 000808 132 CDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 211 (1275)
Q Consensus 132 ~~~t~vg~~~~~~LSGGqrqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~ 211 (1275)
..+ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.++++.+ . +.+|++++|+.+++.+
T Consensus 158 ~~~-----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 158 YLQ-----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-GKTIILVTHDLDNVLE 230 (305)
T ss_pred hhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeeCHHHHHH
Confidence 333 45668999999999999999999999999999999999999999999998753 3 5566778999999999
Q ss_pred hcccEEEecCCeEEEecChhhHH
Q 000808 212 LFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 212 ~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
.||||++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=297.31 Aligned_cols=198 Identities=23% Similarity=0.287 Sum_probs=154.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 47999999999999999999999887 999999998865321 245799999998889999999999874311
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.. ... ..... . ...+....++++++.+||.+..+ +.+..|||||||||+
T Consensus 107 ~~--~~~---~~~~~------~---------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 107 YK--PTW---RSLLG------R---------------FSEEDKERALSALERVGLADKAY-----QRADQLSGGQQQRVA 155 (243)
T ss_pred cc--cch---hhhhc------c---------------ccHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHH
Confidence 00 000 00000 0 00011123566788899975544 345679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+.+++.++||++++|++|++++.|+++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999999999999999999875432 45666688888889999999999999999999987764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=293.12 Aligned_cols=191 Identities=24% Similarity=0.353 Sum_probs=153.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... ..+.++|++|++.+++.+|++||+.+.....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 47999999999999999999999887 999999998765322 2257999999988888999999998754322100
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
. .+....++++++.+||++..++. +..||||||||++||||
T Consensus 106 -------~---------------------------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 106 -------R---------------------------AEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEIARA 146 (236)
T ss_pred -------H---------------------------HHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHH
Confidence 0 00111345678888997655543 45799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|+.+|++++|||||+|||+.++..+.+.++++++.. +.++++++|+.+++.. +|++++|++|++++.|+++++.+
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ-GLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999999999876433 4556667888877764 99999999999999998877653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=299.81 Aligned_cols=190 Identities=21% Similarity=0.313 Sum_probs=153.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||+||+.|+....+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 47999999999999999999999987 999999999875422 2457999999863 6778899999998643221
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. ..+....++++++.+||++..+. .+..||||||||++||
T Consensus 112 ~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 112 IP----------------------------------HEEMKERVNEALELVGMQDFKER-----EPARLSGGQKQRVAIA 152 (279)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHH
Confidence 10 00111235668899999765543 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||+.+|++|+|||||+|||+.++..+.+.++++++.. +++|++++|+.+++ ..+|++++|++|+++..|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999876532 45566677877777 579999999999999999988765
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=292.35 Aligned_cols=194 Identities=23% Similarity=0.255 Sum_probs=154.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCC----CCceeEEEEECCccCCCccc-cceEEEeccccc--cCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDS----KLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDV--HIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~----~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+.+|+.||+.+...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 4799999999999999999999987 5 8999999988754333 257999999974 5567899999987543
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+.. . .+....++++++.+||++. +...++.+..|||||||||
T Consensus 91 ~~~~~------~----------------------------~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~LS~G~~qrv 134 (230)
T TIGR02770 91 SLGKL------S----------------------------KQARALILEALEAVGLPDP--EEVLKKYPFQLSGGMLQRV 134 (230)
T ss_pred HcCcc------H----------------------------HHHHHHHHHHHHHcCCCch--HHHHhCChhhcCHHHHHHH
Confidence 21100 0 0011235668888999743 1122445668999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+||||++.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++..++|++++|++|+++..|+++++
T Consensus 135 ~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 135 MIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987543 345666688888899999999999999999999998776
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 214 ~ 214 (230)
T TIGR02770 214 F 214 (230)
T ss_pred H
Confidence 4
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=296.96 Aligned_cols=190 Identities=23% Similarity=0.318 Sum_probs=154.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----------cccceEEEeccccccCCCCCHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----------VPQRTAAYISQHDVHIGEMTVRETLA 69 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-----------~~~~~~~yv~Q~~~~~~~lTv~e~l~ 69 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||+||+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 47999999999999999999999887 89999999876431 12457999999988888899999998
Q ss_pred HHHhc-cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCcccccccc
Q 000808 70 FSARC-QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGG 148 (1275)
Q Consensus 70 f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 148 (1275)
++... ++.. . .+....++++++.+||++..+ +.++.||||
T Consensus 108 ~~~~~~~~~~-------~---------------------------~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G 148 (250)
T PRK11264 108 EGPVIVKGEP-------K---------------------------EEATARARELLAKVGLAGKET-----SYPRRLSGG 148 (250)
T ss_pred HHHHHhcCCC-------H---------------------------HHHHHHHHHHHHHcCCcchhh-----CChhhCChH
Confidence 75321 1100 0 001123456788899976544 345679999
Q ss_pred ccchhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 149 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 149 qrqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
|||||+|||||+.+|++++|||||+|||+.++..+.+.++++.+ . +.++++++|+.+++.+++|++++|++|++++.|
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998754 2 455666788888999999999999999999999
Q ss_pred ChhhHH
Q 000808 229 PRELVL 234 (1275)
Q Consensus 229 ~~~~~~ 234 (1275)
+++++.
T Consensus 227 ~~~~~~ 232 (250)
T PRK11264 227 PAKALF 232 (250)
T ss_pred CHHHHh
Confidence 887763
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=304.72 Aligned_cols=199 Identities=20% Similarity=0.189 Sum_probs=160.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEecccc--ccCCCCCHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHD--VHIGEMTVRETLAFS 71 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTv~e~l~f~ 71 (1275)
+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++ .+.+.+|+.+++.+.
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 479999999999999999999998742248999999998754321 14799999997 678899999999875
Q ss_pred HhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccc
Q 000808 72 ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKK 151 (1275)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 151 (1275)
...... . . ..+....+.++++.+||++..+. -++.+++|||||||
T Consensus 124 ~~~~~~-~--------~------------------------~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~LSgG~~Q 168 (330)
T PRK09473 124 LMLHKG-M--------S------------------------KAEAFEESVRMLDAVKMPEARKR--MKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHhcC-C--------C------------------------HHHHHHHHHHHHHHcCCCChHHH--hcCCcccCCHHHHH
Confidence 433210 0 0 00111235667888999754322 24677899999999
Q ss_pred hhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
||+|||||+.+|+++++||||+|||+.++.++.+.|+++.+. .+.++++++|+...+.+++|+|++|++|++++.|+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988654 3566777899999999999999999999999999998
Q ss_pred hHHH
Q 000808 232 LVLD 235 (1275)
Q Consensus 232 ~~~~ 235 (1275)
++.+
T Consensus 248 ~i~~ 251 (330)
T PRK09473 248 DVFY 251 (330)
T ss_pred HHHh
Confidence 8753
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=292.14 Aligned_cols=190 Identities=23% Similarity=0.273 Sum_probs=151.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||.||+.++..... . .
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~-~-~ 85 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVL-P-D 85 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcc-c-C
Confidence 47999999999999999999999887 9999999988754322 24899999999999999999988532100 0 0
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
.+ . .+....++++++.+||++..++ .+..||||||||++|||||+
T Consensus 86 ~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~ 130 (230)
T TIGR01184 86 LS------K------------------------SERRAIVEEHIALVGLTEAADK-----RPGQLSGGMKQRVAIARALS 130 (230)
T ss_pred CC------H------------------------HHHHHHHHHHHHHcCCHHHHcC-----ChhhCCHHHHHHHHHHHHHH
Confidence 00 0 0011234667888999765554 34579999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
.+|++++|||||+|||+.++.++.+.+++..+.. +.+|+.++|+.+++.+.+|++++|++|++++.|+..++
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH-RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999999999999999999999876533 45566678888899999999999999999998865443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=302.45 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=153.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEecccc--ccCCCCCHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHD--VHIGEMTVRETLAFS 71 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTv~e~l~f~ 71 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ .+++ .||.||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 47999999999999999999999987 99999999887432 1346799999985 3444 5999999986
Q ss_pred HhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCc-cccccccCCCcccccccccc
Q 000808 72 ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQK 150 (1275)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1275)
....+.. . .+....++++++.+||. +..+ +.+..||||||
T Consensus 111 ~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~ 151 (286)
T PRK13646 111 PKNFKMN----------L------------------------DEVKNYAHRLLMDLGFSRDVMS-----QSPFQMSGGQM 151 (286)
T ss_pred HHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhh-----CCcccCCHHHH
Confidence 4321110 0 01112356678889996 3444 44568999999
Q ss_pred chhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecCh
Q 000808 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~ 230 (1275)
|||+|||||+.+|++++|||||+|||+.++.++.+.++++.+. .+++|++++|+.+++.+.+|++++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987543 356677789999899999999999999999999998
Q ss_pred hhHH
Q 000808 231 ELVL 234 (1275)
Q Consensus 231 ~~~~ 234 (1275)
+++.
T Consensus 231 ~~~~ 234 (286)
T PRK13646 231 KELF 234 (286)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=294.78 Aligned_cols=190 Identities=19% Similarity=0.324 Sum_probs=154.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh-c
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR-C 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~-~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++.. .
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999887 99999999887532 124579999999888889999999987532 1
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+. + . .+....++++++.+||++..+. .++.||||||||++
T Consensus 106 ~~~----~------~------------------------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~ 146 (240)
T PRK09493 106 RGA----S------K------------------------EEAEKQARELLAKVGLAERAHH-----YPSELSGGQQQRVA 146 (240)
T ss_pred cCC----C------H------------------------HHHHHHHHHHHHHcCChHHHhc-----ChhhcCHHHHHHHH
Confidence 100 0 0 0011234667888999755443 45679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||||++.+|++++|||||+|||+.++.++.+.++++.+ . +++|++++|+.+++..++|++++|++|++++.|+.+++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999998753 3 455666788888999999999999999999999887764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=328.02 Aligned_cols=210 Identities=17% Similarity=0.230 Sum_probs=167.8
Q ss_pred cEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++|++++++... ..++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 4699999999985210 012359999999999999999999999999999999999766 358999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCCCCCCCC
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV-GLPGESGLS 831 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~lS 831 (1275)
+.. ..+++.++||+|++.++. -|++||. . + +..++.++++++.+++.+..+... |......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~------~-~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDE------G-E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhccc------c-c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 754 345678999999988775 4777773 1 1 123345778899999876554332 222235799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEE
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 910 (1275)
||||||++|||||+++|++++||||||+||++++..+.+.+. .+..+|+|+|+++|+++ ..+.+|++++|++ |+++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999988664 45456899999999975 5678999999986 6765
Q ss_pred E
Q 000808 911 Y 911 (1275)
Q Consensus 911 ~ 911 (1275)
.
T Consensus 550 ~ 550 (555)
T TIGR01194 550 K 550 (555)
T ss_pred E
Confidence 4
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=288.24 Aligned_cols=183 Identities=28% Similarity=0.412 Sum_probs=149.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 47999999999999999999999887 99999999876421 124579999999988889999999987542
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
... + . ..+..++++++.+||++..+ +.+..||||||||+
T Consensus 102 ~~~-----~------~-------------------------~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 140 (214)
T cd03297 102 RKR-----N------R-------------------------EDRISVDELLDLLGLDHLLN-----RYPAQLSGGEKQRV 140 (214)
T ss_pred hCC-----H------H-------------------------HHHHHHHHHHHHcCCHhHhh-----cCcccCCHHHHHHH
Confidence 100 0 0 00112456788889875444 34567999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
+||||++.+|++++|||||+|||+.++..+.+.++++++.. +++|++++|+.+++.+.+|++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876532 455666888888999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=288.67 Aligned_cols=185 Identities=24% Similarity=0.344 Sum_probs=150.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..... .
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~- 100 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL-K- 100 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc-C-
Confidence 47999999999999999999999887 999999998875432 24579999999998989999999987532110 0
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
. . .+.+..++++++.+||.+..++. +..||||||||++||||+
T Consensus 101 -~---~----------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 101 -L---T----------------------------AEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVL 143 (211)
T ss_pred -c---c----------------------------HHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHH
Confidence 0 0 00112346678888987655543 457999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
+.+|++++|||||+|||+.++..+.+.++++.+. .+.+|+.++|+.+++.+++|++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999987543 2455666889899999999999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=289.30 Aligned_cols=187 Identities=33% Similarity=0.517 Sum_probs=147.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC---CCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD---SKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~---~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.+||+||+.+++.....
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 479999999999999999999998 65 999999998875444567899999999999999999999986543211
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHH-HHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY-YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.... .. ......+. .++.+++.+.. ++.++.|||||||||+||
T Consensus 112 ~~~~---~~----------------------------~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 112 RKSS---DA----------------------------IRKKRVEDVLLRDLALTRIG-----GNLVKGISGGERRRVSIA 155 (226)
T ss_pred cccc---hH----------------------------HHHHHHHHHHHHhhcchhhh-----cccccCcCHHHHHHHHHH
Confidence 0000 00 00011222 67777776444 345568999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCC-hhHHhhcccEEEecCCeEEEec
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA-PETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~-~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
|||+.+|++++|||||+|||+.++.++.+.+++..+ .+.+ +++++|.. .++.+.+|++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~t-iii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRI-VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCE-EEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998754 3344 44456665 6899999999999999998875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=289.21 Aligned_cols=179 Identities=27% Similarity=0.372 Sum_probs=145.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||.||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999887 999999998875432 245799999999888899999999986542
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. . .+.+..++++++.+||++..++ .+..|||||||||+
T Consensus 107 ~~~~-------~---------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 107 RGKK-------E---------------------------REIQRRVGAALRQVGLEHKADA-----FPEQLSGGEQQRVA 147 (214)
T ss_pred cCCC-------H---------------------------HHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHH
Confidence 2100 0 0011234667888898764443 34579999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCe
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~ 223 (1275)
|||||+.+|++++|||||+|||+.++.++.+.++++.+ . +.+|+.++|+.+++.++||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999998754 3 4556667888889999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=324.86 Aligned_cols=205 Identities=23% Similarity=0.345 Sum_probs=166.0
Q ss_pred EEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCC
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. ++++|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC---
Confidence 57889988773 24699999999999999999999999999999999997653 4799999873
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHh-c-----------cCCC---C--------------CCHHHHHHHHHHH
Q 000808 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAW-L-----------RLPP---E--------------VDSETQKMFIEEI 808 (1275)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-l-----------~~~~---~--------------~~~~~~~~~~~~~ 808 (1275)
+.+||++|++.+++.+||+|++.++.. . ..+. . ....+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 347999999988899999999976421 0 0000 0 0001223567889
Q ss_pred HHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec
Q 000808 809 MELVELNPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887 (1275)
Q Consensus 809 l~~l~l~~~~-~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 887 (1275)
++.+|+.+.. +..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||+++|
T Consensus 139 l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997543 3333 46999999999999999999999999999999999999999999864 4899999999
Q ss_pred CCCHHHHHhhhhhheeecCcEE-EEECCC
Q 000808 888 QPSIDIFESFDELFLMKRGGQE-IYVGPL 915 (1275)
Q Consensus 888 ~~~~~~~~~~d~~~~l~~gg~~-~~~g~~ 915 (1275)
+++ .+.+.+|++++|++ |++ ++.|+.
T Consensus 211 d~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 237 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDY-GELRVYPGNY 237 (530)
T ss_pred CHH-HHHhhcceEEEEeC-CEEEEecCCH
Confidence 986 56788999999996 677 588876
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=300.93 Aligned_cols=190 Identities=23% Similarity=0.321 Sum_probs=153.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDV-HIGEMTVRETLAFSA 72 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+..+||.||+.|+.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 47999999999999999999999987 99999999887432 12357999999862 333689999998864
Q ss_pred hccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCc-cccccccCCCccccccccccc
Q 000808 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKK 151 (1275)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1275)
...... . ++....++++++.+||. ...+ +.++.|||||||
T Consensus 112 ~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~q 152 (287)
T PRK13641 112 KNFGFS----------E------------------------DEAKEKALKWLKKVGLSEDLIS-----KSPFELSGGQMR 152 (287)
T ss_pred HHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhh-----CCcccCCHHHHH
Confidence 321100 0 01112356678889996 3333 445679999999
Q ss_pred hhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
||+|||||+.+|++|+|||||+|||+.++..+.+.++++.+ .+++|++++|+.+++.+.||++++|++|++++.|+++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998743 3566677899999999999999999999999999988
Q ss_pred hHH
Q 000808 232 LVL 234 (1275)
Q Consensus 232 ~~~ 234 (1275)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13641 231 EIF 233 (287)
T ss_pred HHh
Confidence 764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=297.57 Aligned_cols=190 Identities=26% Similarity=0.351 Sum_probs=154.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++..||.||+.++....+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 47999999999999999999999987 999999999875432 2457999999863 6777899999988643221
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. . .+....++++++.+||++..++. +..|||||||||+||
T Consensus 112 ~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~la 152 (279)
T PRK13635 112 VP----------R------------------------EEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQRVAIA 152 (279)
T ss_pred CC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHH
Confidence 00 0 01112356778889997665544 457999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||+.+|++++|||||+|||+.++.++.+.|+++... .+++|++++|+.+++. .+|++++|++|++++.|+.+++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999987653 3556666788877776 59999999999999999988765
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=289.38 Aligned_cols=180 Identities=24% Similarity=0.356 Sum_probs=146.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999887 999999998875432 245799999999999999999999986543
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. . ++....++++++.+||++..++ .+.+||||||||++
T Consensus 106 ~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ 146 (214)
T cd03292 106 TGVP----------P------------------------REIRKRVPAALELVGLSHKHRA-----LPAELSGGEQQRVA 146 (214)
T ss_pred cCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHH
Confidence 2100 0 0011134567888898765544 34579999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeE
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i 224 (1275)
|||||+.+|++++|||||+|||+.++..+.+.++++.+ . +.++++++|+.+++.+++|++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998754 3 45666688888889999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=293.67 Aligned_cols=191 Identities=19% Similarity=0.321 Sum_probs=154.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||.||+.+..+...
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 47999999999999999999999887 999999998875432 24579999999988888999999987543210
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
. .+ ..+....++++++.+||++..+ +.++.|||||||||+||
T Consensus 108 ~---~~------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 108 D---LS------------------------------AEQREDRANELMEEFHIEHLRD-----SMGQSLSGGERRRVEIA 149 (241)
T ss_pred c---cC------------------------------HHHHHHHHHHHHHHcCCHHHhh-----cchhhCCHHHHHHHHHH
Confidence 0 00 0001123466788888875433 44568999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||++.+|++++|||||+|||+.++.++.+.++++.. . +.++++++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999999999999999988653 3 455666788888999999999999999999999887753
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=355.66 Aligned_cols=214 Identities=21% Similarity=0.357 Sum_probs=170.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEc-Ccc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP 755 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~ 755 (1275)
.++++|++++|+.. .++++|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcc
Confidence 69999999998521 12469999999999999999999999999999999999866 358999995 566
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhc-cC--------CCC----------------------------
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWL-RL--------PPE---------------------------- 795 (1275)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l-~~--------~~~---------------------------- 795 (1275)
+.. ..+++.+|||+|++.+++ .|++||+.++... +. ...
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 532 345678999999999987 5999999986310 00 000
Q ss_pred -----------CCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000808 796 -----------VDSETQKMFIEEIMELVELNPL-------RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857 (1275)
Q Consensus 796 -----------~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPt 857 (1275)
......++.+.++++.+++.+. .|+.+|.. ...||||||||++|||||+++|+||+|||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0001123457778888877554 35556543 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhhhhheeecC
Q 000808 858 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 858 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 906 (1275)
|+||+.++..+++.|+++.+ +|+|+|+++|+++ ..+.+|++++|++|
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 99999999999999999875 5899999999986 34789999999874
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=290.13 Aligned_cols=191 Identities=21% Similarity=0.340 Sum_probs=155.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|+.||+.+..... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~-- 100 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-L-- 100 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-c--
Confidence 47899999999999999999999887 899999998875432 2357999999998899899999998743210 0
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
... ......++++++.+||++..++. ++.||||||||++||||+
T Consensus 101 ~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral 144 (232)
T PRK10771 101 KLN-------------------------------AAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALARCL 144 (232)
T ss_pred CCC-------------------------------HHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHHHHH
Confidence 000 00112356678889997655544 457999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++++|||||+|||+.++..+.+.|+++.+.. ++++++++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999875533 455666888888999999999999999999999887765
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=302.39 Aligned_cols=199 Identities=19% Similarity=0.185 Sum_probs=158.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC-ceeEEEEECCccCCCccc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKL-KFSGRVTYNGHGMDEFVP-------QRTAAYISQHD--VHIGEMTVRETLAF 70 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~-~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTv~e~l~f 70 (1275)
+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++|++|++ .+.+.+||.+++..
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 479999999999999999999987421 248999999998754321 13699999987 47888999999877
Q ss_pred HHhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCcccccccccc
Q 000808 71 SARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1275)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1275)
....... . ...+....++++++.+||++..+ .-++.+++||||||
T Consensus 115 ~l~~~~~-~--------------------------------~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~ 159 (326)
T PRK11022 115 AIKVHQG-G--------------------------------NKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHhcC-C--------------------------------CHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHH
Confidence 5432110 0 00111224567899999975321 12456788999999
Q ss_pred chhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecCh
Q 000808 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~ 230 (1275)
|||+|||||+.+|++|++||||+|||+.++.++++.|+++.+.. +.+++.++|+...+.+++|+|++|++|++++.|++
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999986543 55667789999999999999999999999999999
Q ss_pred hhHHH
Q 000808 231 ELVLD 235 (1275)
Q Consensus 231 ~~~~~ 235 (1275)
+++.+
T Consensus 239 ~~~~~ 243 (326)
T PRK11022 239 HDIFR 243 (326)
T ss_pred HHHhh
Confidence 88753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=293.17 Aligned_cols=180 Identities=21% Similarity=0.262 Sum_probs=149.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+||+.++..
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~------- 107 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLK------- 107 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhccc-------
Confidence 47999999999999999999999887 9999999976532 34579999999888888999999987421
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
. . ....++++++.+||.+..+ +.+..|||||||||+|||||+
T Consensus 108 -~---~-----------------------------~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 108 -G---Q-----------------------------WRDAALQALAAVGLADRAN-----EWPAALSGGQKQRVALARALI 149 (257)
T ss_pred -c---h-----------------------------HHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHh
Confidence 0 0 0012355788889876544 345679999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+.+++.+.+|++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999999875433 455666888888899999999999999999988653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=292.76 Aligned_cols=186 Identities=25% Similarity=0.352 Sum_probs=151.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||.||+.+.....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE-- 101 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC--
Confidence 47999999999999999999999887 99999999887532 245899999988888899999998864321100
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
. .+....++++++.+||++..+ +.+..|||||||||+|||||+
T Consensus 102 --------~------------------------~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 102 --------K------------------------MQRLEIAHQMLKKVGLEGAEK-----RYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred --------H------------------------HHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHHh
Confidence 0 001123566788999976544 345679999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEec--CCeEEEecChh
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DAQIVYQGPRE 231 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~--~G~i~~~G~~~ 231 (1275)
.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+.+++..+||++++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999875433 4556668888889999999999998 59999888643
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=285.26 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=164.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC-C-CCceeEEEEECCccCCCccc-------cceEEEeccc--cccCCCCCHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD-S-KLKFSGRVTYNGHGMDEFVP-------QRTAAYISQH--DVHIGEMTVRETLA 69 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~-~-~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~--~~~~~~lTv~e~l~ 69 (1275)
+++|+|.|||||||+.++|+|+++ | ....+|+|.++|+++-.... .+.++|++|+ ..+-|..||.+.+.
T Consensus 33 ~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~ 112 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA 112 (316)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH
Confidence 479999999999999999999997 4 33467999999998744321 2579999998 45778899999998
Q ss_pred HHHhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccc
Q 000808 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQ 149 (1275)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1275)
-..+.+.... ..++....+.++|+.+||++.+. +.+.++.+|||||
T Consensus 113 E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGM 158 (316)
T COG0444 113 EVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcH
Confidence 7665322100 01123345677899999986542 4467899999999
Q ss_pred cchhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecC
Q 000808 150 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1275)
Q Consensus 150 rqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~ 229 (1275)
||||.||.||+.+|++|+.||||++||..++.+|++.|+++.++ .+++++.++|+..-+.++||||+||..|+|++.|+
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 99999999999999999999999999999999999999998764 57778889999999999999999999999999999
Q ss_pred hhhHH
Q 000808 230 RELVL 234 (1275)
Q Consensus 230 ~~~~~ 234 (1275)
.+++.
T Consensus 238 ~~~i~ 242 (316)
T COG0444 238 VEEIF 242 (316)
T ss_pred HHHHh
Confidence 98875
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=283.07 Aligned_cols=166 Identities=44% Similarity=0.732 Sum_probs=139.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
+++|+||||||||||+++|+|.++|....+|+|.++|.++... ..++.++|++|++.+++.+||+||+.+++...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--- 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---
Confidence 4799999999999999999999983112399999999887543 23467999999999999999999998743210
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
.++.+..||||||||++||||
T Consensus 112 -----------------------------------------------------------~~~~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 112 -----------------------------------------------------------GNEFVRGISGGERKRVSIAEA 132 (202)
T ss_pred -----------------------------------------------------------cccchhhCCHHHHHHHHHHHH
Confidence 123445799999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
|+.+|++++|||||+|||+.++..+.+.++++.+..+.++++++||+.+++.+.+|++++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998765334566776777778999999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=322.68 Aligned_cols=206 Identities=25% Similarity=0.350 Sum_probs=167.0
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|+++++. +++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--
Confidence 588999998873 124699999999999999999999999999999999998653 4799998752
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHh-cc------------CCCCCC--------------------HHHHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAW-LR------------LPPEVD--------------------SETQKM 803 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-l~------------~~~~~~--------------------~~~~~~ 803 (1275)
..+||++|++.+++.+||.|++.+... .+ ...... ..+.++
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999999999999999987521 00 000000 001235
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 000808 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883 (1275)
Q Consensus 804 ~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi 883 (1275)
+++++++.+|+.. .+..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 6788899999953 45554 469999999999999999999999999999999999999999999986 25999
Q ss_pred EEecCCCHHHHHhhhhhheeecCcEEE-EECCC
Q 000808 884 CTIHQPSIDIFESFDELFLMKRGGQEI-YVGPL 915 (1275)
Q Consensus 884 ~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g~~ 915 (1275)
++||+++ .+...+|++++|++ |+++ |.|+.
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 245 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY 245 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCH
Confidence 9999986 56678999999996 6765 77875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=293.00 Aligned_cols=192 Identities=23% Similarity=0.377 Sum_probs=153.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.+++ .|++||+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~ 107 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPR 107 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHH
Confidence 47999999999999999999999763 11279999999887531 12467999999988888 999999998654
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCc----cccccccCCCccccccccc
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE----VCDDTLVGDEMVRGISGGQ 149 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1275)
.++.. . . .+....++.+++.+||. +.. ++.++.|||||
T Consensus 108 ~~~~~---~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~~LSgG~ 149 (247)
T TIGR00972 108 LHGIK---D------K------------------------KELDEIVEESLKKAALWDEVKDRL-----HDSALGLSGGQ 149 (247)
T ss_pred hcCCC---C------H------------------------HHHHHHHHHHHHHcCCCcchhhHh-----hCCcccCCHHH
Confidence 32100 0 0 00112345678888886 333 34566899999
Q ss_pred cchhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecC
Q 000808 150 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1275)
Q Consensus 150 rqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~ 229 (1275)
||||+|||||+.+|++++|||||+|||+.++..+.+.++++.+ + .+|++++|+.+++.+++|++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998754 3 456668888889999999999999999999998
Q ss_pred hhhHH
Q 000808 230 RELVL 234 (1275)
Q Consensus 230 ~~~~~ 234 (1275)
++++.
T Consensus 227 ~~~~~ 231 (247)
T TIGR00972 227 TEQIF 231 (247)
T ss_pred HHHHH
Confidence 87764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=288.47 Aligned_cols=181 Identities=23% Similarity=0.324 Sum_probs=144.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc------c-ceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP------Q-RTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~------~-~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... + +.++|++|++.+++.+||+||+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999887 9999999988754321 2 569999999888889999999988643
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
.... + . .+....++++++.+||++..+ +.++.|||||||||
T Consensus 110 ~~~~----~------~------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 150 (221)
T TIGR02211 110 IGKK----S------V------------------------KEAKERAYEMLEKVGLEHRIN-----HRPSELSGGERQRV 150 (221)
T ss_pred hcCC----C------H------------------------HHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHH
Confidence 2110 0 0 001112456788899975544 34567999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEE
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~ 225 (1275)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+.+++. .+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999876433 445555777777765 47999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=288.98 Aligned_cols=187 Identities=24% Similarity=0.309 Sum_probs=146.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHD--VHIGEMTVRETLAFSA 72 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1275)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 47999999999999999999999887 999999998875432 246799999997 4567899999998865
Q ss_pred hccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCc-cccccccCCCccccccccccc
Q 000808 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKK 151 (1275)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1275)
........ . .......+++++.++|. ...+ +.+..|||||||
T Consensus 110 ~~~~~~~~-----~---------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~q 152 (228)
T cd03257 110 RIHGKLSK-----K---------------------------EARKEAVLLLLVGVGLPEEVLN-----RYPHELSGGQRQ 152 (228)
T ss_pred HhccCCcH-----H---------------------------HHHHHHHHHHHHHCCCChhHhh-----CCchhcCHHHHH
Confidence 42210000 0 00001123567788884 2333 445679999999
Q ss_pred hhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEec
Q 000808 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1275)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G 228 (1275)
||+|||||+.+|++++|||||+|||+.++..+.+.+++.++.. +.+|++++|+.+++...+|++++|++|+++..|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999876532 455666788888899999999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=300.39 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=158.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHD--VHIGEMTVRETLAFSA 72 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1275)
+++|+|+||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++ .+.+.+||.+++.+..
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 47999999999999999999999886 899999999875432 245799999987 5788899999998755
Q ss_pred hccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCcc-ccccccCCCccccccccccc
Q 000808 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVGDEMVRGISGGQKK 151 (1275)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrq 151 (1275)
..... .. ..+....+.++++.+||.. .. ++.++.|||||||
T Consensus 120 ~~~~~---------~~------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~p~~LSgGq~Q 161 (327)
T PRK11308 120 LINTS---------LS------------------------AAERREKALAMMAKVGLRPEHY-----DRYPHMFSGGQRQ 161 (327)
T ss_pred HHccC---------CC------------------------HHHHHHHHHHHHHHCCCChHHh-----cCCCccCCHHHHH
Confidence 43210 00 0011224567899999953 33 4566789999999
Q ss_pred hhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
||+|||||+.+|++|++||||+|||..++.++++.|+++.+. .++++++++|+...+.+++|+|++|++|++++.|+.+
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987654 3566777899999999999999999999999999998
Q ss_pred hHHH
Q 000808 232 LVLD 235 (1275)
Q Consensus 232 ~~~~ 235 (1275)
++.+
T Consensus 241 ~~~~ 244 (327)
T PRK11308 241 QIFN 244 (327)
T ss_pred HHhc
Confidence 8753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=289.37 Aligned_cols=187 Identities=24% Similarity=0.305 Sum_probs=150.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 47999999999999999999999987 999999998875432 13569999999999999999999988653211
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhC-CccccccccCCCccccccccccchhhH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG-LEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1275)
.. . ....+++++.++ +++.. ++.++.||||||||++|
T Consensus 105 ~~----------~---------------------------~~~~~~~l~~~~~l~~~~-----~~~~~~LS~G~~qrv~l 142 (230)
T TIGR03410 105 RR----------S---------------------------RKIPDEIYELFPVLKEML-----GRRGGDLSGGQQQQLAI 142 (230)
T ss_pred cc----------h---------------------------HHHHHHHHHHHHhHHHHh-----hCChhhCCHHHHHHHHH
Confidence 00 0 001233455554 33323 34566899999999999
Q ss_pred HHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
||||+.+|++++|||||+|||+.++.++.+.|++..+. ++.+++.++|+.+++..++|++++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999987543 245666688888899999999999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=300.97 Aligned_cols=196 Identities=20% Similarity=0.273 Sum_probs=154.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|+.++. ...+|+|.++|.++... ..++.++||+|+++++ +.|++||+.|+..
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~ 188 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPR 188 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHH
Confidence 47999999999999999999998631 12389999999988531 2356799999998877 5799999998643
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+... . +..+..++..++..+|.+..++.++ +.+.+|||||||||
T Consensus 189 ~~~~~~----------~-----------------------~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl 234 (329)
T PRK14257 189 NNGIND----------R-----------------------KILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRL 234 (329)
T ss_pred hcCCCh----------H-----------------------HHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHH
Confidence 221000 0 0001123455667777554445554 46778999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+||||++.+|+|++|||||+|||+.+...+.+.+++..+ +.++++++|..+.+.+.+|||++|++|++++.|+++++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999988643 35666788989899999999999999999999999987
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 312 ~ 312 (329)
T PRK14257 312 F 312 (329)
T ss_pred h
Confidence 5
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=329.82 Aligned_cols=193 Identities=24% Similarity=0.371 Sum_probs=154.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
.+||+||||||||||++.|+|.++|+ +|+|.+||.++++.. .++.++||+|++.+|. .||+|||.++.+-
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--- 429 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD--- 429 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC---
Confidence 37999999999999999999999987 999999999987654 4688999999988886 7999999995321
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
...++..+++... ...+.++ .++++.||.||+ ++.+||||||||++|||
T Consensus 430 ----------------------at~eei~~a~k~a------~~~d~I~--~lp~g~dt~vge-~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 430 ----------------------ATDEEIEEALKLA------NAHEFIA--NLPDGYDTIVGE-RGVNLSGGQRQRLAIAR 478 (567)
T ss_pred ----------------------CCHHHHHHHHHHh------ChHHHHH--hCcccccceecC-CCccCCHHHHHHHHHHH
Confidence 0011111111110 1122233 368899999994 55689999999999999
Q ss_pred HHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHH
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~ 235 (1275)
|++.+|+||+||||||+||+.+...+.+.+++.. .++|+++ +.|..+.+.+ +|+|++|++|++++.|+++++..
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999998654 2346666 6666655555 99999999999999999999875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-31 Score=290.83 Aligned_cols=188 Identities=24% Similarity=0.373 Sum_probs=149.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||.||+.++.....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 109 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence 47999999999999999999999887 999999998875432 23579999999888998999999988532110
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHh-CCccccccccCCCccccccccccchhhH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVL-GLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1275)
. .+. ...++.+++.+ ++.+..+ +.++.||||||||++|
T Consensus 110 ---~----~~~-----------------------------~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrl~l 148 (237)
T PRK11614 110 ---R----DQF-----------------------------QERIKWVYELFPRLHERRI-----QRAGTMSGGEQQMLAI 148 (237)
T ss_pred ---h----hHH-----------------------------HHHHHHHHHHHHHHHHHHh-----CchhhCCHHHHHHHHH
Confidence 0 000 00123344555 3543333 3456799999999999
Q ss_pred HHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||++.+|++++|||||+|||+.++..+.+.++++.+ . +.+|+.++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-Q-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999999999999999999998754 3 455666788888999999999999999999999988764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=287.43 Aligned_cols=181 Identities=22% Similarity=0.285 Sum_probs=147.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++..|++||+.+....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 47999999999999999999999887 999999998775421 245799999998888899999999886532
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. . ++....++..++.+||.+..+ +.+..||||||||++
T Consensus 107 ~~~~-------~---------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ 147 (222)
T PRK10908 107 AGAS-------G---------------------------DDIRRRVSAALDKVGLLDKAK-----NFPIQLSGGEQQRVG 147 (222)
T ss_pred cCCC-------H---------------------------HHHHHHHHHHHHHcCChhhhh-----CCchhCCHHHHHHHH
Confidence 2100 0 001112456788888876444 345679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEE
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~ 225 (1275)
||||++.+|++++|||||+|||+.++..+.+.+++..+ . +.++++++|+.+++...+|++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999998754 2 456666888888999999999999999975
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=283.89 Aligned_cols=186 Identities=20% Similarity=0.297 Sum_probs=151.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-cccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|+.||+.+...... ..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~-~~ 101 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL-KL 101 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC-Cc
Confidence 47999999999999999999999987 99999999887532 234679999999999988999999987532100 00
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
+ .+.+..++++++.+||++..++ .++.||||||||++||||+
T Consensus 102 --~-------------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 102 --N-------------------------------AEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALARCL 143 (213)
T ss_pred --c-------------------------------HHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHHHHH
Confidence 0 0011224567888999765443 4567999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecC
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~ 229 (1275)
+.+|++++|||||+|||+.++..+.+.+++..+. .+++|++++|+.+++.+.+|++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999987543 24566668888888899999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=247.29 Aligned_cols=180 Identities=26% Similarity=0.329 Sum_probs=155.1
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCc-eEEEEEEEcCccCCc-ccccceEEEeccCCCCCCCCC
Q 000808 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQ-ETFTRISGYCEQNDIHSPFVT 779 (1275)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lt 779 (1275)
+..+|-|+|++|.+||++.||||||||||||+..+.|...+. ..+|++++|++.++. ..-+|++|..+||+.+||.++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 356999999999999999999999999999999999965433 478999999988654 234688999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000808 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859 (1275)
Q Consensus 780 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsg 859 (1275)
|.+|+.|+. |.+...+.+++.++..+++.||....+... ..||||||-||++-|+|+..|+.++||||+|.
T Consensus 94 Vg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~ 164 (213)
T COG4136 94 VGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDP-----ATLSGGQRARVALLRALLAQPKALLLDEPFSR 164 (213)
T ss_pred cccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcCh-----hhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence 999998863 455555677778899999999998877653 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh-hCCCEEEEEecCCC
Q 000808 860 LDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 890 (1275)
Q Consensus 860 LD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~ 890 (1275)
||..-+.+..+.+-... ..|..+|.+|||..
T Consensus 165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999888876544 45899999999854
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=297.53 Aligned_cols=192 Identities=24% Similarity=0.324 Sum_probs=154.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC--c---cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE--F---VPQRTAAYISQHDV-HIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~--~---~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+...||+||+.++...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 47999999999999999999999987 9999999988742 1 22467999999863 34467999999886432
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. . .+....++.+++.+||.+..+ +.++.||||||||++
T Consensus 111 ~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 111 LKLP----------E------------------------DEVRKRVDNALKRTGIEHLKD-----KPTHCLSFGQKKRVA 151 (283)
T ss_pred cCCC----------H------------------------HHHHHHHHHHHHHCCChhhhh-----CCcccCCHHHHHHHH
Confidence 1100 0 001123566788999976554 456689999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|++|+|||||+|||+.++..+.+.++++++. .+++|+.++|+.+++...|||+++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999987653 2456666889998999999999999999999999988765
Q ss_pred H
Q 000808 235 D 235 (1275)
Q Consensus 235 ~ 235 (1275)
.
T Consensus 231 ~ 231 (283)
T PRK13636 231 A 231 (283)
T ss_pred c
Confidence 3
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=291.59 Aligned_cols=198 Identities=22% Similarity=0.254 Sum_probs=154.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCc---cccceEEEeccccccCCCCCHHHHHHHHHhcc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDEF---VPQRTAAYISQHDVHIGEMTVRETLAFSARCQ 75 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~--~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~ 75 (1275)
+++|+||||||||||+++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+++.+||.||+.++....
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 110 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhc
Confidence 47999999999999999999998741 12489999999887532 23467999999988888999999999865322
Q ss_pred CCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhH
Q 000808 76 GVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1275)
..... ..+....+++.++.+||.+..... -++.+.+|||||||||+|
T Consensus 111 ~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 111 RLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred cccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHH
Confidence 10000 000112345678888885421111 134567899999999999
Q ss_pred HHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||||+.+|++++|||||+|||+.++.++.+.+++..+ +.++++++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999998742 355666888888899999999999999999999987764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=292.83 Aligned_cols=191 Identities=21% Similarity=0.283 Sum_probs=154.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc----------------cccceEEEeccccccCCCCCH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF----------------VPQRTAAYISQHDVHIGEMTV 64 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTv 64 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 47999999999999999999999887 89999999876420 124579999999999999999
Q ss_pred HHHHHHHHh-ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccc
Q 000808 65 RETLAFSAR-CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVR 143 (1275)
Q Consensus 65 ~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 143 (1275)
+||+.++.. ..... ..+.+..+.++++.+||.+.. .++.+.
T Consensus 110 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~----~~~~~~ 151 (257)
T PRK10619 110 LENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVGIDERA----QGKYPV 151 (257)
T ss_pred HHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcCCChhh----hhCCcc
Confidence 999987532 11000 001112345678889997542 124456
Q ss_pred cccccccchhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCe
Q 000808 144 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223 (1275)
Q Consensus 144 ~LSGGqrqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~ 223 (1275)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++..+||++++|++|+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999998754 2 5566668888888999999999999999
Q ss_pred EEEecChhhHH
Q 000808 224 IVYQGPRELVL 234 (1275)
Q Consensus 224 i~~~G~~~~~~ 234 (1275)
+++.|+++++.
T Consensus 230 i~~~~~~~~~~ 240 (257)
T PRK10619 230 IEEEGAPEQLF 240 (257)
T ss_pred EEEeCCHHHhh
Confidence 99999887754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=290.37 Aligned_cols=197 Identities=19% Similarity=0.283 Sum_probs=155.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 47999999999999999999999887 999999998775432 13469999999999999999999998543110
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
..+....... ..+....+++.++.+|+++..++ .++.|||||||||+||
T Consensus 107 --~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 107 --SVFASLFFRL------------------------SAEEKDRIEEVLETIGLADEADR-----LAGLLSHGQKQWLEIG 155 (242)
T ss_pred --cccccccccc------------------------HHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHH
Confidence 0000000000 00112235678888999765544 4557999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||++.+|++++|||||+|||+.++..+.+.++++.+ + .+|++++|+.+++.++||++++|++|++++.|+++++.
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 999999999999999999999999999999998753 3 45666888888999999999999999999999877653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=295.80 Aligned_cols=191 Identities=25% Similarity=0.331 Sum_probs=154.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...||.||+.+.....+
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 47999999999999999999999987 999999998875422 2357899999863 3446799999987543211
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. ..+....++..++.+||.+..++. ++.||||||||++||
T Consensus 109 ~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~la 149 (277)
T PRK13652 109 LD----------------------------------EETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIA 149 (277)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHH
Confidence 00 000112356678889997655544 457999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||+.+|++++|||||+|||+.++..+.+.++++.+. .+++|+.++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999999999999999999999987653 2456666888888999999999999999999999988874
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=276.99 Aligned_cols=189 Identities=26% Similarity=0.351 Sum_probs=157.7
Q ss_pred EEEEEeEEEEEeccchhhhcccccc-ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCcc
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILED-KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
-++.+|++..+..... .... ...+++||||+|++||.+||+|.||||||||-++|.|..+ +.+|+|.++|.+
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcc
Confidence 4778888877754321 0111 2479999999999999999999999999999999999876 458999999987
Q ss_pred CCcccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000808 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 756 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGe 834 (1275)
+.... .+++.+++.++++.+|+.. ..++. +.++||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchh
Confidence 54211 3455677899999999865 33333 35799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEEC
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVG 913 (1275)
Q Consensus 835 rqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 913 (1275)
|||+.|||||+.+|+++++|||||.||...+.++.++|+++.++ |.|.++++||.+ .+...+|++.+|.. |+++..|
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g 192 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIG 192 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEec
Confidence 99999999999999999999999999999999999999999765 999999999986 46778999999996 7999999
Q ss_pred CCC
Q 000808 914 PLG 916 (1275)
Q Consensus 914 ~~~ 916 (1275)
+.+
T Consensus 193 ~~~ 195 (268)
T COG4608 193 PTE 195 (268)
T ss_pred CHH
Confidence 873
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=295.38 Aligned_cols=189 Identities=26% Similarity=0.355 Sum_probs=152.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccc-cCCCCCHHHHHHHHHhcc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDV-HIGEMTVRETLAFSARCQ 75 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~ 75 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...|+.||+.+.....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 47999999999999999999999887 999999998875422 2457999999865 366789999998864321
Q ss_pred CCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhH
Q 000808 76 GVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1275)
+.. . .+....++++++.+||++..++. ++.||||||||++|
T Consensus 107 ~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~l 147 (274)
T PRK13644 107 CLP----------P------------------------IEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQCVAL 147 (274)
T ss_pred CCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHHHHH
Confidence 100 0 00112346678889997665544 45799999999999
Q ss_pred HHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||||+.+|++++|||||+|||+.++..+.+.++++.+ .+++|++++|+.+++ ..+|++++|++|++++.|+++++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999998754 355666678888887 569999999999999999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=292.56 Aligned_cols=206 Identities=21% Similarity=0.280 Sum_probs=156.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .+..++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 47999999999999999999999987 999999998875432 12358999999999999999999998643110
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
. .+....... . .... ....+....++++++.+||++..+ +.++.||||||||++||
T Consensus 110 ~---~~~~~~~~~--------~-~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 110 K---TGLFSGLLK--------T-PAFR-------RAESEALDRAATWLERVGLLEHAN-----RQAGNLAYGQQRRLEIA 165 (255)
T ss_pred c---chhhhhhcc--------c-cccc-------cchhHHHHHHHHHHHhCChhhhhh-----CChhhCCHHHHHHHHHH
Confidence 0 000000000 0 0000 000011223566788899875444 44567999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 9999999999999999999999999999999987543 2456666888888999999999999999999999887653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=292.72 Aligned_cols=190 Identities=21% Similarity=0.290 Sum_probs=152.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++..|+++|+.+.....+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 47999999999999999999999887 999999998875422 2457999999874 6778899999988643211
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. . .+....++.+++.+|+.+..++ .++.||||||||++||
T Consensus 114 ~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 154 (269)
T PRK13648 114 VP----------Y------------------------DEMHRRVSEALKQVDMLERADY-----EPNALSGGQKQRVAIA 154 (269)
T ss_pred CC----------H------------------------HHHHHHHHHHHHHcCCchhhhC-----CcccCCHHHHHHHHHH
Confidence 00 0 0011234567888898765543 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
||++.+|++++|||||+|||+.++..+.+.++++.+. ++++|++++|+.+++.. +|++++|++|++++.|+++++.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999987543 24555567777777765 9999999999999999988764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=292.60 Aligned_cols=216 Identities=26% Similarity=0.407 Sum_probs=175.0
Q ss_pred CCCcEEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEc
Q 000808 673 FEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 752 (1275)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~ 752 (1275)
..+..+.|+++++.++ +++++|+++||++++|+++|++||||+||||++++|....+ ..+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEc
Confidence 3456799999999986 34679999999999999999999999999999999998766 358999999
Q ss_pred CccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccC
Q 000808 753 GYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFI-----EEIMELVELNPLRQSLVGL 824 (1275)
Q Consensus 753 g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~~~~ 824 (1275)
|+++.. ...++-+|.||||..++. -|...|+.|+. .+.+.++..... ...++ .+.+-.++.||.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 998653 457788999999998875 48888887753 233333332211 11222 233445677775
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheee
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 904 (1275)
.+. .|||||||||+|||+++.+|+||++||+||+||..+.+.|+..|++.+ .|+|.+++.|+++ ..-.+|.|++|+
T Consensus 396 rgl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~ 471 (497)
T COG5265 396 RGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLD 471 (497)
T ss_pred hee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEee
Confidence 433 499999999999999999999999999999999999999999999986 5899999999987 345689999999
Q ss_pred cCcEEEEECCC
Q 000808 905 RGGQEIYVGPL 915 (1275)
Q Consensus 905 ~gg~~~~~g~~ 915 (1275)
+ |+++.-|.-
T Consensus 472 ~-g~i~erg~h 481 (497)
T COG5265 472 N-GRIVERGTH 481 (497)
T ss_pred C-CEEEecCcH
Confidence 6 799999975
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=294.34 Aligned_cols=190 Identities=28% Similarity=0.371 Sum_probs=152.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----cccceEEEecccccc-CCCCCHHHHHHHHHhc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVH-IGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~-~~~lTv~e~l~f~~~~ 74 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.. +...|+.||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 47999999999999999999999987 99999999887421 123579999998652 4456899999886432
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
.+.. . .+....++.+++.+||.+..++ .+..||||||||++
T Consensus 106 ~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~ 146 (271)
T PRK13638 106 LGVP----------E------------------------AEITRRVDEALTLVDAQHFRHQ-----PIQCLSHGQKKRVA 146 (271)
T ss_pred cCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhcC-----CchhCCHHHHHHHH
Confidence 2100 0 0011124567888888765544 45579999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||||+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|++++|+.+++.+++|++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998754 3 455666889888999999999999999999999987764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=295.17 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=150.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDV-HIGEMTVRETLAFSA 72 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+...||+||+.+..
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~ 111 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGP 111 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 47999999999999999999999887 99999999887532 12457999999862 233479999998864
Q ss_pred hccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCcc-ccccccCCCccccccccccc
Q 000808 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVGDEMVRGISGGQKK 151 (1275)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrq 151 (1275)
...+.. . ++....++.+++.+||.. ..+ +.++.|||||||
T Consensus 112 ~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~q 152 (280)
T PRK13649 112 QNFGVS----------Q------------------------EEAEALAREKLALVGISESLFE-----KNPFELSGGQMR 152 (280)
T ss_pred HHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhh-----CCcccCCHHHHH
Confidence 321100 0 001123456788888863 233 445679999999
Q ss_pred hhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++.+++|++++|++|++++.|+++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998754 3 456666788888899999999999999999999988
Q ss_pred hHH
Q 000808 232 LVL 234 (1275)
Q Consensus 232 ~~~ 234 (1275)
++.
T Consensus 231 ~~~ 233 (280)
T PRK13649 231 DIF 233 (280)
T ss_pred HHh
Confidence 764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=291.23 Aligned_cols=191 Identities=30% Similarity=0.425 Sum_probs=153.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++......
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 47999999999999999999999887 999999998764322 235699999998887889999999885421100
Q ss_pred CCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHH
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1275)
.. ++....++++++.+||++..++. +..|||||||||+|||
T Consensus 107 --~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 107 --SR--------------------------------AEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLAR 147 (258)
T ss_pred --Cc--------------------------------HHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHH
Confidence 00 00111245678888997655544 4579999999999999
Q ss_pred HHh------cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 158 MMV------GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 158 al~------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
||+ .+|++++|||||+|||+.++..+.+.++++.+.. +.+|++++|+.+++..++|++++|++|++++.|+++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 5999999999999999999999999999876333 455666888888999999999999999999999887
Q ss_pred hHH
Q 000808 232 LVL 234 (1275)
Q Consensus 232 ~~~ 234 (1275)
++.
T Consensus 227 ~~~ 229 (258)
T PRK13548 227 EVL 229 (258)
T ss_pred HHh
Confidence 654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=294.43 Aligned_cols=190 Identities=24% Similarity=0.326 Sum_probs=151.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc---cccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .++.+||+||+.++.....
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 47999999999999999999999987 99999999987542 23467999999863 5778899999988643211
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
. + .++....++++++.+||.+..++. ++.||||||||++||
T Consensus 114 ~----~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 154 (271)
T PRK13632 114 V----P------------------------------PKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIA 154 (271)
T ss_pred C----C------------------------------HHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHHHHHHH
Confidence 0 0 000112356678889997655544 457999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
|||+.+|++++|||||+|||+.++..+.+.++++.+. ++++|++++|+.+++. .+|++++|++|++++.|+.+++.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999987643 3355555677777774 79999999999999999887754
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=285.12 Aligned_cols=182 Identities=25% Similarity=0.328 Sum_probs=150.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+|++||+.+.....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~--- 100 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGL--- 100 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCC---
Confidence 47999999999999999999999887 999999998765322 35799999998888889999999875432110
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
....++.+++.+||.+..+. .+..||||||||++||||++
T Consensus 101 -----------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 101 -----------------------------------PDSRIDEVLNIVDLTNTGKK-----KAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred -----------------------------------CHHHHHHHHHHcCCcHHHhh-----hHhhCCHHHHHHHHHHHHHh
Confidence 00123456788888765443 45679999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
.+|++++|||||+|||+.++..+.+.|++..+ . +.+|+.++|+.+++.+.+|++++|++|++++.|++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999998753 3 455666788888899999999999999999999764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=252.03 Aligned_cols=181 Identities=25% Similarity=0.330 Sum_probs=151.8
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHhc
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 2 ~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1275)
++|+|||||||||||-+|+|+-.|+ +|+|.+.|+++..... .+.+|+|+|.-.++|++|..||+...+.+
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 6899999999999999999999987 9999999998865431 36899999999999999999999998877
Q ss_pred cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhh
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1275)
++-+.+ +......+.|+.+||.+-.+ .++++|||||+|||+
T Consensus 116 ~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~-----HyP~qLSGGEQQRVA 156 (228)
T COG4181 116 RGESSA----------------------------------DSRAGAKALLEAVGLGKRLT-----HYPAQLSGGEQQRVA 156 (228)
T ss_pred cCCccc----------------------------------cHHHHHHHHHHHhCcccccc-----cCccccCchHHHHHH
Confidence 652111 01123456789999986543 356789999999999
Q ss_pred HHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEE
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVY 226 (1275)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~ 226 (1275)
||||+...|+|||-||||-+||..+..+|.+.+-.+.+. .+++.+.++|+. .....|||.+-|.+|+++.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999888765 466666677765 5677899999999999874
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-31 Score=289.74 Aligned_cols=191 Identities=21% Similarity=0.246 Sum_probs=154.6
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEE-----------EcCccCCcc--c-c--cceEEE
Q 000808 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE--T-F--TRISGY 767 (1275)
Q Consensus 704 ~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~--~~~~~~ 767 (1275)
.+|+|+| .+++||+++|+|||||||||||++|+|..++ .+|+|. ++|.+.... . . ...++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5999999 5999999999999999999999999998763 478885 777765321 1 1 123689
Q ss_pred eccCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000808 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVAN 847 (1275)
Q Consensus 768 v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~ 847 (1275)
++|+...++. ++.+++.+.. + ....++.+.++++.+|+.+..+..+ ..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~~-~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIPK-AVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCch-HHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhC
Confidence 9998777774 7888876532 1 1223456789999999987766654 46999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 848 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 848 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|++++|||||+|||+.+...+.+.|+++.++|+|||+++|+++ .+...+|++++|. |++.++|-
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~ 221 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGV 221 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCccee
Confidence 9999999999999999999999999998877899999999975 4566899999996 34665553
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=249.08 Aligned_cols=188 Identities=25% Similarity=0.319 Sum_probs=152.7
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc---------cccceEEEeccccccCCCCCHHHHHHHHH
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---------VPQRTAAYISQHDVHIGEMTVRETLAFSA 72 (1275)
Q Consensus 2 ~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~---------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~ 72 (1275)
+.++||||+|||||++.|.=+..|. +|+..+.|...+-. ..|+.+|+|+|+..++|.+||.||+.-+.
T Consensus 31 lvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap 107 (242)
T COG4161 31 LVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP 107 (242)
T ss_pred EEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh
Confidence 5789999999999999998776676 99999988654211 12467999999999999999999997632
Q ss_pred hccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccch
Q 000808 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKR 152 (1275)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1275)
++-. -+.++++.....++|+.+.|.+.+| +.+-.|||||+||
T Consensus 108 -~kv~--------------------------------gl~~~qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqr 149 (242)
T COG4161 108 -CRVL--------------------------------GLSKDQALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQR 149 (242)
T ss_pred -HHHh--------------------------------CCCHHHHHHHHHHHHHHhccccccc-----cCceecccchhhh
Confidence 1100 0112223344567899999987765 5566799999999
Q ss_pred hhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhh
Q 000808 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1275)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~ 232 (1275)
|+|||||+..|++|++||||++|||.-..++++.++++... +.+-++++|..+-+.+.+.+|+.|++|+|++.|+.+.
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~t--gitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET--GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhc--CceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999999998753 4555557888888999999999999999999998754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=291.98 Aligned_cols=195 Identities=17% Similarity=0.264 Sum_probs=151.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC--ceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKL--KFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|..+|.. ..+|+|.++|.++... ..++.++|++|++.+++ +|++||+.+..+
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 118 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPR 118 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHH
Confidence 479999999999999999999987510 1389999999876431 12457999999988777 899999998654
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+.. .. +....++++++.+|+....... -++.+..|||||||||
T Consensus 119 ~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 119 IHGAN----------KK------------------------DLDGVVENALRSAALWDETSDR-LKSPALSLSGGQQQRL 163 (258)
T ss_pred HcCCC----------HH------------------------HHHHHHHHHHHHcCCCcchhhh-hcCChhhCCHHHHHHH
Confidence 22110 00 0011245567777774211111 1345668999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|||||+.+|++++|||||+|||+.++..+.+.++++.+ +.+|++++|+.+++.++||++++|++|++++.|+++++
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998742 35666688888899999999999999999999998776
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 241 ~ 241 (258)
T PRK14268 241 F 241 (258)
T ss_pred h
Confidence 3
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=284.97 Aligned_cols=179 Identities=28% Similarity=0.402 Sum_probs=143.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+|++||+.++....+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 47999999999999999999999887 999999998775322 2457999999864 3667899999988543211
Q ss_pred CCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHH
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1275)
.. . .+....++++++.+||++..+ +.+..|||||||||+||
T Consensus 106 ~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la 146 (211)
T cd03225 106 LP----------E------------------------EEIEERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIA 146 (211)
T ss_pred CC----------H------------------------HHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHH
Confidence 00 0 001113456788889875444 34567999999999999
Q ss_pred HHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCe
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223 (1275)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~ 223 (1275)
|||+.+|++++|||||+|||+.++.++.+.++++.+. +++|+.++|+.+++..+||++++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999987642 4566668888889999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=291.55 Aligned_cols=196 Identities=20% Similarity=0.251 Sum_probs=150.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC--ceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKL--KFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+++ +||+||+.++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~ 113 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPK 113 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHH
Confidence 479999999999999999999998621 1389999999876421 23467999999987774 899999998653
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+.. + . .+.+..++..++.+++.+... ..-++.++.|||||||||
T Consensus 114 ~~~~~---~---~---------------------------~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 114 IHGTK---D---K---------------------------KKLDEIVEQSLKKSALWNEVK-DKLNTNALSLSGGQQQRL 159 (254)
T ss_pred hcCCC---C---H---------------------------HHHHHHHHHHHHHhCCchhhH-HHHhCCcccCCHHHHHHH
Confidence 22100 0 0 001112345566677632100 011334568999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .++++++|+.+++.+.+|++++|++|+++..|+++++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--S-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998742 3 5566688888899999999999999999999998876
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 237 ~ 237 (254)
T PRK14273 237 F 237 (254)
T ss_pred H
Confidence 4
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=286.32 Aligned_cols=191 Identities=24% Similarity=0.399 Sum_probs=155.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++....+..
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~- 102 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD- 102 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC-
Confidence 47999999999999999999999987 899999998875422 2457999999998898999999998864321100
Q ss_pred cchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHH
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1275)
. .+....+.++++.+||++..++. ++.||||||||++||||+
T Consensus 103 ---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral 144 (235)
T cd03299 103 ---------K------------------------KEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARAL 144 (235)
T ss_pred ---------H------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHH
Confidence 0 00111245678888997655544 457999999999999999
Q ss_pred hcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHH
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~ 234 (1275)
+.+|++++|||||+|||+.++.++.+.++++.... ++++++++|..+++.+.+|++++|++|++++.|+++++.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999875432 455666788888899999999999999999999887654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=291.65 Aligned_cols=196 Identities=21% Similarity=0.282 Sum_probs=150.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC--CCCceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD--SKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1275)
+++|+||||||||||+++|+|... |....+|+|.++|+++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 112 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLR 112 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHH
Confidence 479999999999999999999864 1001389999999887431 12467999999988787 599999998654
Q ss_pred ccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchh
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1275)
..+... . ++....++..++.+||.+...+.. ++.++.|||||||||
T Consensus 113 ~~~~~~-----~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv 158 (253)
T PRK14242 113 VNGVKD-----K----------------------------AYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRL 158 (253)
T ss_pred HcCCCC-----H----------------------------HHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHH
Confidence 321100 0 000112445677777753211112 345678999999999
Q ss_pred hHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhH
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~ 233 (1275)
+|||||+.+|++++|||||+|||+.++.++.+.|+++. . +.+|++++|+.+++.+++|++++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~--~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A--RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c--CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999873 2 35666688888899999999999999999999988776
Q ss_pred H
Q 000808 234 L 234 (1275)
Q Consensus 234 ~ 234 (1275)
.
T Consensus 236 ~ 236 (253)
T PRK14242 236 F 236 (253)
T ss_pred H
Confidence 3
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=289.98 Aligned_cols=189 Identities=25% Similarity=0.324 Sum_probs=152.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC---------ccccceEEEeccccccCCCCCHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE---------FVPQRTAAYISQHDVHIGEMTVRETLAFS 71 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~---------~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~ 71 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. ...++.++|++|++.+++.+||.||+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~ 106 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence 47999999999999999999999887 9999999987621 01245799999999999999999999753
Q ss_pred -HhccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCcccccccccc
Q 000808 72 -ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1275)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1275)
....+.. . .+....++++++.+||+...+. .+..||||||
T Consensus 107 ~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~ 147 (242)
T PRK11124 107 PCRVLGLS----------K------------------------DQALARAEKLLERLRLKPYADR-----FPLHLSGGQQ 147 (242)
T ss_pred HHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHH
Confidence 2111100 0 0011235667888999765443 4567999999
Q ss_pred chhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecCh
Q 000808 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~ 230 (1275)
||++||||++.+|++++|||||+|||+.++..+.+.++++.. . ++++++++|+..++.+++|++++|++|++++.|++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998743 3 45566678888889899999999999999999987
Q ss_pred hhH
Q 000808 231 ELV 233 (1275)
Q Consensus 231 ~~~ 233 (1275)
+++
T Consensus 226 ~~~ 228 (242)
T PRK11124 226 SCF 228 (242)
T ss_pred HHh
Confidence 654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=291.42 Aligned_cols=192 Identities=23% Similarity=0.295 Sum_probs=153.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHD--VHIGEMTVRETLAFSA 72 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+.+.+||+||+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999887 999999998875432 245799999986 4567899999998754
Q ss_pred hccCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCc-cccccccCCCccccccccccc
Q 000808 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKK 151 (1275)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1275)
.... ... ..+....++++++.+||. ...+ +.+..|||||||
T Consensus 116 ~~~~---~~~------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~LSgGe~q 157 (265)
T TIGR02769 116 RHLT---SLD------------------------------ESEQKARIAELLDMVGLRSEDAD-----KLPRQLSGGQLQ 157 (265)
T ss_pred HHhc---CCC------------------------------HHHHHHHHHHHHHHcCCChhhhh-----CChhhCCHHHHH
Confidence 3110 000 000112356678888985 3333 445689999999
Q ss_pred hhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChh
Q 000808 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1275)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~ 231 (1275)
||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|++++|+.+.+..++|++++|++|++++.|+++
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 9999999999999999999999999999999999999876532 456666888888999999999999999999999988
Q ss_pred hHH
Q 000808 232 LVL 234 (1275)
Q Consensus 232 ~~~ 234 (1275)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=263.63 Aligned_cols=205 Identities=23% Similarity=0.341 Sum_probs=164.3
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccCCcccc---cceEEEeccCCC--CC
Q 000808 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF---TRISGYCEQNDI--HS 775 (1275)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~---~~~~~~v~q~~~--~~ 775 (1275)
..+++|+++|++|..|+++.|+|.||||||||+|+|+|... +.+|+|.|+|.++++... ...++-|+|++. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 35689999999999999999999999999999999999876 458999999998865322 234567899975 57
Q ss_pred CCCCHHHHHHHHHhccCCCCCC---HHHHHHHHHHHHHH--cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000808 776 PFVTVYESLLYSAWLRLPPEVD---SETQKMFIEEIMEL--VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 850 (1275)
Q Consensus 776 ~~ltv~e~l~~~~~l~~~~~~~---~~~~~~~~~~~l~~--l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~i 850 (1275)
+.+|+.||+..+..-....... ...+++...+-++. +||++..++.+| -|||||||-+++++|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 9999999998765321111111 12233333444444 566777778776 4999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhhhhheeecCcEEEEECC
Q 000808 851 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 851 lllDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 914 (1275)
|+|||-|++|||.++..+++.-.++.++ +.|.+++||..+ +...+-+|.++|++ |+++.+=.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~-G~IvlDv~ 232 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHS-GKIVLDVT 232 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeC-CeEEEEcc
Confidence 9999999999999999999999998654 789999999986 57788899999985 78887543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=320.30 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEeccchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCceEEEEEEEcCccC
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~~GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++++|++++++ +++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.+++
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~--- 66 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP--- 66 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC---
Confidence 478899998873 124699999999999999999999999999999999998653 479999875
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHhc-cC-----------CCCCCHH---------------------HHHH
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWL-RL-----------PPEVDSE---------------------TQKM 803 (1275)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l-~~-----------~~~~~~~---------------------~~~~ 803 (1275)
...+||++|++.+++.+||+|++.++... +. ......+ ...+
T Consensus 67 -----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 67 -----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred -----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 13589999999999999999999874311 00 0000010 0123
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 000808 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883 (1275)
Q Consensus 804 ~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi 883 (1275)
+++++++.+|+.. .+..+ ..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 34444 479999999999999999999999999999999999999999999876 35999
Q ss_pred EEecCCCHHHHHhhhhhheeecCcEEE-EECCC
Q 000808 884 CTIHQPSIDIFESFDELFLMKRGGQEI-YVGPL 915 (1275)
Q Consensus 884 ~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g~~ 915 (1275)
+++|+++ .+...+|++++|.+ |+++ +.|+.
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~ 243 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY 243 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCH
Confidence 9999975 46678999999996 6755 77775
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=290.20 Aligned_cols=191 Identities=21% Similarity=0.296 Sum_probs=154.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCc----------------cccceEEEeccccccCCCCCH
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF----------------VPQRTAAYISQHDVHIGEMTV 64 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTv 64 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 47999999999999999999999887 99999999876431 124679999999988999999
Q ss_pred HHHHHHHHhc-cCCCCcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccc
Q 000808 65 RETLAFSARC-QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVR 143 (1275)
Q Consensus 65 ~e~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 143 (1275)
.||+.++... .+.. . .+....++++++.+|+.+..+ +.+.
T Consensus 105 ~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~-----~~~~ 145 (252)
T TIGR03005 105 LDNVTEAPVLVLGMA----------R------------------------AEAEKRAMELLDMVGLADKAD-----HMPA 145 (252)
T ss_pred HHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhh-----cChh
Confidence 9999885321 0000 0 001113456788889875544 3456
Q ss_pred cccccccchhhHHHHHhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCe
Q 000808 144 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223 (1275)
Q Consensus 144 ~LSGGqrqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~ 223 (1275)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++..+. .++++++++|+.+++.+++|++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999987643 35566668888889999999999999999
Q ss_pred EEEecChhhHH
Q 000808 224 IVYQGPRELVL 234 (1275)
Q Consensus 224 i~~~G~~~~~~ 234 (1275)
+++.|+++++.
T Consensus 225 i~~~g~~~~~~ 235 (252)
T TIGR03005 225 IVEQGKPDEIF 235 (252)
T ss_pred EEEeCCHHHHh
Confidence 99999887664
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=267.97 Aligned_cols=192 Identities=22% Similarity=0.328 Sum_probs=167.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ~~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1275)
|.+++|||||||||++++|+|.++|+ +|+|.++|.+++.. .+.+|||+|++--+++.+||.|.+.|.|+++++..
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~- 104 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPK- 104 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcH-
Confidence 57899999999999999999999997 99999999987643 24579999999999999999999999999987531
Q ss_pred chhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHHHh
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1275)
++.+...+..|+.+++..... +++.+||.|.+|++.+-.+++
T Consensus 105 ---------------------------------~e~~~~~~~wLer~~i~~~~~-----~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 105 ---------------------------------AEIQKKLQAWLERLEIVGKKT-----KKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ---------------------------------HHHHHHHHHHHHhcccccccc-----chHHHhhhhhhHHHHHHHHHh
Confidence 112233567899998876654 446689999999999999999
Q ss_pred cCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHH
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1275)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f 237 (1275)
++|++++||||+|||||.+.+-+-+.+.++.. .+.+|+..+|.++.+.++||++++|++|+.+.+|+.++++.-|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999999998754 4677777899999999999999999999999999999998744
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=293.70 Aligned_cols=195 Identities=28% Similarity=0.403 Sum_probs=156.3
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 2 ~~ilG~~GsGKSTLl~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1275)
++|+||||||||||.++|.|-.+|. +|.|.+||.+++.-+ ..+.+||.||+-.+|+ .||.|||.= +.
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR---f~--- 434 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR---FG--- 434 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh---cc---
Confidence 6899999999999999999999887 999999999886543 3478999999876665 699999952 11
Q ss_pred CcchhhhHhhHHHHhcCCCCCCchhHHHHHhhhhcchhhhhHHHHHHHhCCccccccccCCCccccccccccchhhHHHH
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1275)
++.|.++..+++.... +.++ .+.|++++||.||+. ..+||||||||+++|||
T Consensus 435 -------------------~~~d~~kIieAA~lAg------vHel--Il~lP~GYdT~iG~~-G~~LSgGQRQRIaLARA 486 (580)
T COG4618 435 -------------------EEADPEKVIEAARLAG------VHEL--ILRLPQGYDTRIGEG-GATLSGGQRQRIALARA 486 (580)
T ss_pred -------------------ccCCHHHHHHHHHHcC------hHHH--HHhCcCCccCccCCC-CCCCCchHHHHHHHHHH
Confidence 1233444444433221 1222 245999999999975 45899999999999999
Q ss_pred HhcCCeEEEEeCCCcccchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEecCCeEEEecChhhHHHHH
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1275)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~ii~l~~G~i~~~G~~~~~~~~f 237 (1275)
|+++|.+++||||-|+||.....-+.+.+.+.. ..++++|++ +| .+.+...+|+|++|++|++..+|+.+|+....
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvvi-aH-RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVI-AH-RPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEE-ec-CHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999999999998864 345565554 43 34688999999999999999999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1275 | ||||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-11 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-08 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-08 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 9e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 9e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-07 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-06 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 9e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 6e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-04 |
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1275 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-24 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-10 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-08 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 9e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 9e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-22 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-06 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-21 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 8e-11 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-05 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-04 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-20 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-06 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-05 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-05 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 5e-07 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-08 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 9e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-11 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-11 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 7e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 9e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-08 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-07 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 1e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 8e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-04 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-05 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-04 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 5e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 761
L G+S G + L+G +GAGKTT + +++ + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
++ Y + + E L + A S + +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 882 VVCTIH 887
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 62/197 (31%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE----------FVPQRTAAYIS 53
L+GP +GKTT L ++ + SG VT G + E ++P+ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 54 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
M E L F A S E+ + A
Sbjct: 101 ------RNMQGIEYLRFVAGFYASSSS-----EIEEMVERA------------------- 130
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEIS 172
++ GL + V S G +++ ++ P L +DE +
Sbjct: 131 ----------TEIAGLGE-----KIKDRVSTYSKGMVRKLLIARALMVNPRL-AILDEPT 174
Query: 173 TGLDSSTTFQIVNSIRQ 189
+GLD ++ ++Q
Sbjct: 175 SGLDVLNAREVRKILKQ 191
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 36/220 (16%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 761
L ++ G + A++G +G GK+TL+D+L G R G I E +
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVY 65
Query: 762 TRISGYCEQNDIHSPF-VTVYESLL-----YSAWLRLPPEVDSETQKMFIEEIMELVELN 815
I G+ Q SPF +V + +L + P D + + ++ + L
Sbjct: 66 QSI-GFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLT 119
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 874
L + + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 875 TVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914
TVV T HQP+ + ++ L+ + G
Sbjct: 175 AQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 40/241 (16%), Positives = 78/241 (32%), Gaps = 64/241 (26%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ +LG GK+TLL L G G++ ++ ++ Q
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY----------QSIGFVPQFFSSPF 79
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+V + + G R + A+ + D V M+A
Sbjct: 80 AYSVLDIVLM-------G-RSTHINTFAKPKSH-------DYQVAMQA------------ 112
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGL 175
L L L +SGGQ++ + ++ A+A + +DE ++ L
Sbjct: 113 ---LDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIASECKLILLDEPTSAL 159
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISL--LQPAPETYDLFDDIILLSDAQIVYQGPRELV 233
D + +++ + N T V + + + +LL+ Q G +
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNK-QNFKFGETRNI 215
Query: 234 L 234
L
Sbjct: 216 L 216
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 9e-23
Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 27/205 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETFT 762
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+I + + I ++V + L A L + K I + +E VE+ L++ L
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKKL- 131
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 881
LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 132 -----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 882 VVCTIHQPSIDIFESFDELFLMKRG 906
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 9e-10
Identities = 37/232 (15%), Positives = 67/232 (28%), Gaps = 66/232 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE------FVPQRTAAYISQHDV 57
GP GKTTLL ++ L G + YNG + + F+P+
Sbjct: 40 FHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKIFFLPEEIIVP------ 90
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+++V + L A GV + K
Sbjct: 91 --RKISVEDYLKAVASLYGV-----------KVNKNE----------------------- 114
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLD 176
L+ + + + +S G +RV ++ + +D+ +D
Sbjct: 115 --IMDALESVEVLDLKKK------LGELSQGTIRRVQLASTLLVNAEI-YVLDDPVVAID 165
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ +++ SI I G +IS + E D L
Sbjct: 166 EDSKHKVLKSIL-EILKEKGIVIIS----SREELSYCDVNENLHKYSTKIDK 212
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-22
Identities = 64/315 (20%), Positives = 117/315 (37%), Gaps = 63/315 (20%)
Query: 648 FSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDK---LM 704
FS+ R +Q + + F P+ + F +++ VD+ +E ++ K
Sbjct: 311 FSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF 370
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
L G R G + ++G +G GKTT + +LAG T G + ++T++ K Q
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ---- 424
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
I TVYE L + E+++ + + L
Sbjct: 425 YIK--------AEYEGTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRN- 468
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 881
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 469 --VED--LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524
Query: 882 VVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGV-------EN 934
+ H D L + + + FEG PG
Sbjct: 525 ALVVEH----------DVLMI--------------DYVSDRLIVFEGEPGRHGRALPPMG 560
Query: 935 IKDGYNPATWMLEVT 949
+++G N + +T
Sbjct: 561 MREGMNRFLASVGIT 575
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 14/185 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--Q 758
+ + G++ ++G +G GKTT + +LAG+ + + I + Q
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
F R+ + + +V + + L +VD + EE+++ +EL +
Sbjct: 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENVL 222
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 223 DRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 879 GRTVV 883
G+ V+
Sbjct: 278 GKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-07
Identities = 57/269 (21%), Positives = 94/269 (34%), Gaps = 78/269 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++GP GKTT + LAG + G+V ++ T AY Q+ E T
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEE---PTEGKVEWDL----------TVAYKPQYIKAEYEGT 433
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V E +L+++ + + ++
Sbjct: 434 VYE----------------LLSKIDSSKLNSNFYKT---EL------------------- 455
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
LK LG+ D V D +SGG+ +RV ++ A +DE S LD +
Sbjct: 456 LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 184 VNSIRQNIHILNGTA-VISLLQPAPETYDLFDDIIL---LSDAQIVYQGPRELVLDFFES 239
+IR + TA V+ D+++ +SD IV++G
Sbjct: 511 SRAIRHLMEKNEKTALVVE------------HDVLMIDYVSDRLIVFEGEPGRHGRALPP 558
Query: 240 MGFKCPERKGVADFLQE--VTSRKDQQQY 266
M R+G+ FL +T R+D
Sbjct: 559 M----GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 45/213 (21%), Positives = 70/213 (32%), Gaps = 66/213 (30%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEM 62
++GP +GKTT + LAG+L L + D I
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSW------------------DNVIRAF 159
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP-DPDIDVYMKAAATEGQEANVLT- 120
E + + E +D+ KA +G+ +L
Sbjct: 160 RGNELQNY---------------FERLKNGEIRPVVKPQYVDLLPKA--VKGKVRELLKK 202
Query: 121 -------DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFM 168
+ +K L LE V D + +SGG+ +RV + AL F
Sbjct: 203 VDEVGKFEEVVKELELEN-----VLDRELHQLSGGELQRV-----AIAAALLRKAHFYFF 252
Query: 169 DEISTGLDSSTTFQIVNSIRQNIHILN-GTAVI 200
DE S+ LD ++ IR + N G AV+
Sbjct: 253 DEPSSYLDIRQRLKVARVIR---RLANEGKAVL 282
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 33/215 (15%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFT 762
L +SG R G + L+G +GAGK+TL+ +AG G I + + +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 763 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
Y Q PF V+ L + +E + ++ + L+
Sbjct: 73 LHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRS 123
Query: 822 VGLPGESGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 875 TVDTGRTVVCTIHQPSIDI---FESFDELFLMKRG 906
G +V + H D+ +L+K G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 43/259 (16%), Positives = 70/259 (27%), Gaps = 90/259 (34%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA---AYISQHDV 57
+ L+GP +GK+TLL +AG G + + G ++ + + A AY+SQ
Sbjct: 28 ILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQT 83
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
V L ++
Sbjct: 84 PPFATPVWHYLTL------------------------HQHDKTRTELLNDV--------- 110
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV--------TTGEMMVGPALALFMD 169
+SGG+ +RV T + L L +D
Sbjct: 111 -----------AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL-LLLD 158
Query: 170 EISTGLDSSTTFQIVNSIRQNIHILN--------GTAVISLLQPAPETYDL------FDD 215
E LD + Q + G A++ +DL
Sbjct: 159 EPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS------HDLNHTLRHAHR 202
Query: 216 IILLSDAQIVYQGPRELVL 234
LL +++ G RE VL
Sbjct: 203 AWLLKGGKMLASGRREEVL 221
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-21
Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 35/249 (14%)
Query: 644 VKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKL 703
V + S RE + L F +L F + D+ + + L
Sbjct: 300 VYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSL 359
Query: 704 M------LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP 755
+LN G F + +MG +G GKTTL+ +LAG + G + +S P
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP 419
Query: 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
+K TV + L + ++ + + F ++++ + ++
Sbjct: 420 QK-------IAPKFPG-------TVRQ-LFFK---KIRGQFLNP---QFQTDVVKPLRID 458
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
+ V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 459 DIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 876 V-DTGRTVV 883
+ +T
Sbjct: 514 ILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 23/184 (12%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK------QETFTRI- 764
RPG + L+G +G GK+T + +LAG + G K Q FT++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 765 -----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+ Q + P L+L E E ++ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE----DVKRYIKILQLENVLK 216
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
+ LS + +R I + V + DEP+S LD + + +R+ +
Sbjct: 217 RD---IEK--LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 880 RTVV 883
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 35/252 (13%), Positives = 62/252 (24%), Gaps = 83/252 (32%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD----------------EFVP 45
L+G GK+T L LAGK GR +
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 46 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVY 105
A Q+ +I ++ + + ++ R K ++
Sbjct: 163 DIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRYIKILQLEN------- 213
Query: 106 MKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA 165
+ ++ L SGG+ +R +G +
Sbjct: 214 -------------VLKRDIEKL------------------SGGELQRF-----AIGMSCV 237
Query: 166 -----LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF------D 214
DE S+ LD IR + + +DL D
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRS-LLAPTKYVICV-------EHDLSVLDYLSD 289
Query: 215 DIILLSDAQIVY 226
+ ++ VY
Sbjct: 290 FVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 41/191 (21%), Positives = 63/191 (32%), Gaps = 56/191 (29%)
Query: 10 SGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLA 69
+GKTTL+ LAG L G+ +P+ + Q TVR+
Sbjct: 389 TGKTTLIKLLAGALKPD---EGQD----------IPKLNVSMKPQKIAPKFPGTVRQLFF 435
Query: 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGL 129
R + + + + +K L +
Sbjct: 436 KKIR-----------GQFLNPQFQTDV---------------------------VKPLRI 457
Query: 130 EVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQ 189
DD + D+ V+ +SGG+ +RV + PA +DE S LDS IR+
Sbjct: 458 ---DDII--DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 190 NIHILNGTAVI 200
I TA I
Sbjct: 513 FILHNKKTAFI 523
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 4e-20
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 28/217 (12%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFT 762
+L +S G L G++GAGKTTL+++L T +G + + G + ++
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYS 91
Query: 763 ------RISGYCEQNDIH---SPFVTVYESLL--YSAWLRLPPEVDSETQKMFIEEIMEL 811
I G+ + V + ++ + + ++D E + ++++L
Sbjct: 92 AETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE-IRNEAHQLLKL 148
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
V ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 149 VGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 872 VR--NTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ + ++ H +I +F ++ L+K G
Sbjct: 204 LDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 49/253 (19%), Positives = 79/253 (31%), Gaps = 75/253 (29%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE-------------FVPQRTAA 50
L G +GKTTLL L SG V G + FV
Sbjct: 52 LYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108
Query: 51 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAA 110
+ V + + S + +G Y + + R
Sbjct: 109 KFQEG------ERVIDVVI-SGAFKSIG-VYQDIDDEIRN-------------------- 140
Query: 111 TEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA----- 165
LK++G+ + + +S G+K+RV M+ AL
Sbjct: 141 --------EAHQLLKLVGMSA-----KAQQYIGYLSTGEKQRV-----MIARALMGQPQV 182
Query: 166 LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL----LQPAPETYDLFDDIILLSD 221
L +DE + GLD +++ + A+I ++ F I+LL D
Sbjct: 183 LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA---NFSKILLLKD 238
Query: 222 AQIVYQGPRELVL 234
Q + QG E +L
Sbjct: 239 GQSIQQGAVEDIL 251
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 1e-19
Identities = 55/253 (21%), Positives = 87/253 (34%), Gaps = 56/253 (22%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L +G + G + ++G +G GKTT +L G G +T I Y K Q F
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP- 341
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
+ TV + +L + T F EE+ + + L+ L +S V
Sbjct: 342 -----------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV- 383
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
+ LS + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 384 ----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 884 CTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIPGVE-------NIK 936
D + I F+G P +K
Sbjct: 440 ---------FIIDHDLSIH--------------DYIADRIIVFKGEPEKAGLATSPVTLK 476
Query: 937 DGYNPATWMLEVT 949
G N LEVT
Sbjct: 477 TGMNEFLRELEVT 489
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-12
Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDI 773
+ + ++G +G GKTT++ +LAG + N K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRG----KEI 74
Query: 774 HSPFVTVYESLLYSAWLRLPPEVD--SETQKMFIEEIMELVELNPLRQSLVGLPGESG-- 829
++ F +Y + L + V+ S+ K + EI+ ++ + + L +
Sbjct: 75 YNYFKELYSNELKI--VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 830 ------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
Query: 884 CTIH 887
H
Sbjct: 192 VVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 59/241 (24%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKL-KFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGE 61
+LG GKTT+L LAG++ + +V + + F + Y +
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD-EVLKRFRGKEIYNYFKE------L 81
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+ L + Q + ++ + + + D
Sbjct: 82 YSN--ELKIVHKIQ----YVEYASKFLKGTVNEIL---------------TKIDERGKKD 120
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLD 176
++L + + ++ +SGG +R+ +V +L D+ S+ LD
Sbjct: 121 EVKELLNMT-----NLWNKDANILSGGGLQRL-----LVAASLLREADVYIFDQPSSYLD 170
Query: 177 SSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDDIILLSDAQIVYQGPR 230
+ +IR+ +L VI +L L D I ++ VY
Sbjct: 171 VRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD------YLTDLIHIIYGESSVYGRVS 221
Query: 231 E 231
+
Sbjct: 222 K 222
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 72/267 (26%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
+LGP GKTT L G++ + G VT + +Y Q + T
Sbjct: 299 ILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGT 346
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V++ L +++ + + E+
Sbjct: 347 VQQYLENASK-DALSTSSWFFEEV------------------------------------ 369
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
K L L L + V +SGG+ +++ + A +D+ S+ LD + +
Sbjct: 370 TKRLNL---HRLL--ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424
Query: 184 VNSIRQNIHILNGTA-VISLLQPAPETYDL-FDDIILLSDAQIVYQGPRELVLDFFESMG 241
+I++ +I +DL ++D IV++G E +
Sbjct: 425 AKAIKRVTRERKAVTFIID--------HDLSI--HDYIADRIIVFKG--EPEKAGLATSP 472
Query: 242 FKCPERKGVADFLQE--VTSRKDQQQY 266
+ G+ +FL+E VT R+D +
Sbjct: 473 V--TLKTGMNEFLRELEVTFRRDAETG 497
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 7e-19
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G + G + ++G +G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
I TVYE L +++S + E+++ + + L
Sbjct: 356 IK--------ADYEGTVYELLSKI----DASKLNSNF---YKTELLKPLGIIDLYDRE-- 398
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 882
E LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 399 -VNE--LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 883 V 883
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 40/189 (21%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--QETFTRISGY 767
+ G++ ++G +G GK+T + +LAG+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 768 CEQNDIH----SPFV---------TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
+I +V V E L + +EE+++ +EL
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELL------------KKADETGKLEEVVKALEL 148
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ + + LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 149 ENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 875 TVDTGRTVV 883
+ G++V+
Sbjct: 204 LSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 54/269 (20%), Positives = 94/269 (34%), Gaps = 78/269 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++GP GKTT + LAG + G++ ++ + PQ YI E T
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEE---PTEGKIEWDLTVA--YKPQ----YIKAD----YEGT 363
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V E +L+++ + + ++
Sbjct: 364 VYE----------------LLSKIDASKLNSNFYKT-EL--------------------- 385
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
LK LG+ D V + +SGG+ +RV ++ A +DE S LD +
Sbjct: 386 LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440
Query: 184 VNSIRQNIHILNGTA-VISLLQPAPETYDLFDDIIL---LSDAQIVYQGPRELVLDFFES 239
+IR + TA V+ D+++ +SD +V++G E
Sbjct: 441 SRAIRHLMEKNEKTALVVE------------HDVLMIDYVSDRLMVFEG--EPGKYGRAL 486
Query: 240 MGFKCPERKGVADFLQE--VTSRKDQQQY 266
R+G+ FL +T R+D
Sbjct: 487 PPM--GMREGMNRFLASIGITFRRDPDTG 513
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 35/208 (16%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFTRISGYCEQND 772
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 773 IHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESG 829
VTV + + E+ + + E+++ ++L LR+ +
Sbjct: 82 EAYEIGVTVNDIVYL------YEELKGLDRDL-FLEMLKALKLGEEILRRK----LYK-- 128
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH-- 183
Query: 890 SIDIFESF---DELFLMKRGGQEIYVGP 914
++ + G +
Sbjct: 184 --ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 41/244 (16%), Positives = 74/244 (30%), Gaps = 80/244 (32%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQH-DVHIGE 61
+LGP SGKTTLL A++G L SG + NG + + R + + + ++
Sbjct: 35 ILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVRKIRNYIRYSTNLPEAYEIG--- 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+TV + + +G+ E
Sbjct: 88 VTVNDIVYLYEELKGLDR---------DLFLEM--------------------------- 111
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLD 176
LK L L + + + +S GQ V ALA + +DE +D
Sbjct: 112 --LKALKL---GEEI-LRRKLYKLSAGQSVLVR-----TSLALASQPEIVGLDEPFENVD 160
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDIILLSDAQIVYQG-- 228
++ I I++ ++ T++ + +
Sbjct: 161 AARRHVISRYIKE----YGKEGILV-------THELDMLNLYKEYKAYFLVGNRLQGPIS 209
Query: 229 PREL 232
EL
Sbjct: 210 VSEL 213
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 9e-16
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 35/214 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L VS G + G +G+GK+TL+ ++AG T +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 764 ISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVELNPLRQ 819
G Q F V++ + ++ + D + + +++ ME
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAFA------VKNFYPDRDPVPL-VKKAME--------- 122
Query: 820 SLVGLPGES-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
VGL +S LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 123 -FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 873 RNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
G+TV+ H + D + ++++G
Sbjct: 182 EKWKTLGKTVILISHDIE-TVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 46/242 (19%), Positives = 82/242 (33%), Gaps = 67/242 (27%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTAAYISQH-DVHIG 60
+ G SGK+TLL +AG + SG V Y+G + + R Q+ +
Sbjct: 38 VAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDG--ERKKGYEIRRNIGIAFQYPEDQFF 92
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
V + +AF+ + + K+A
Sbjct: 93 AERVFDEVAFAVKNFYPD------RDPVPLVKKA-------------------------- 120
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------LFMDEI 171
++ +GL+ D + +SGG+K+RV A+A L +DE
Sbjct: 121 ---MEFVGLDFDS---FKDRVPFFLSGGEKRRV---------AIASVIVHEPDILILDEP 165
Query: 172 STGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PR 230
GLD ++ + + G VI + + D +++L + V+ G
Sbjct: 166 LVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRM 223
Query: 231 EL 232
E
Sbjct: 224 EF 225
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 1e-15
Identities = 91/653 (13%), Positives = 179/653 (27%), Gaps = 215/653 (32%)
Query: 47 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVY- 105
T YI Q D + V F+ V SR +L R+ ++P ++ +
Sbjct: 108 MTRMYIEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDG 157
Query: 106 MKAAATEGQEANVLTDYYLK-VLGLEVCDDTLVGDEMVRGI---SGGQKKRVTTGEMMVG 161
+ + G K + L+VC V +M I + T M+
Sbjct: 158 VLGS---G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 162 PALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLL--QPAPETYDLFDDIILL 219
L ++ D S+ +I+ IH + + LL +P + ++
Sbjct: 204 KLLYQIDPNWTSRSDHSS------NIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNV--- 253
Query: 220 SDAQIVYQGPRELVLDFFESMGFKCP----ER-KGVADFLQEVTSRKDQQQYWVHKEMPY 274
+A+ + C R K V DFL T+ H M
Sbjct: 254 QNAKAW------------NAFNLSCKILLTTRFKQVTDFLSAATTTHISL---DHHSMTL 298
Query: 275 RFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGVGKKELLKANISREL 334
T E + + + D P + ++P L + E ++ ++
Sbjct: 299 ---TPDEVKSLLLKY-LDCRPQDL---PREVLTTNPRRL--SIIA----ESIRDGLAT-- 343
Query: 335 LLMKRNSFVYIF--KLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFN 392
+++ ++ KLT +
Sbjct: 344 ----WDNWKHVNCDKLTTI----------------------------------------- 358
Query: 393 GMSDISMTIAKL-PVFYKQRDLRFYAAWAYALPAWIL----KIPISFLEVAVWVFLTYYV 447
I ++ L P Y++ + + + IP L + +W +
Sbjct: 359 ----IESSLNVLEPAEYRKM----FDRLS------VFPPSAHIPTILLSL-IWFDVIKSD 403
Query: 448 IGFDPNIGRLFKQFLLLLLVNQMASAL----FRFIA-----AAGRNMIVAMSFGSFVLLV 498
+ N +L K L+ + ++ A IV + +
Sbjct: 404 VMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD----HYNIPK 457
Query: 499 LFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTSNSNETLGVQVL 558
F + D Y+ S GH + ++
Sbjct: 458 TFDSDDLIPPYLD-------QYFYS-------------HIGHHLKN----------IEHP 487
Query: 559 KSRGFFPHAY----WYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESES--- 611
+ F + + L I L L Q + + I D
Sbjct: 488 ERMTLFRMVFLDFRF----LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 612 --NDLGNRIGGTAQLSTHGSNSSHKTC-------SESEDITVKDSFSQLLSQR 655
N + + + ++ + S + T +E E I +++ Q+ QR
Sbjct: 544 LVNAILDFL---PKIEENLICSKY-TDLLRIALMAEDEAI-FEEAHKQV--QR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 1e-09
Identities = 95/699 (13%), Positives = 177/699 (25%), Gaps = 205/699 (29%)
Query: 155 TGEMMVG--PALALFMDEISTGLDSSTTFQIVNSIRQNI------HILNGTAVISLLQPA 206
TGE L++F D D + + + + HI+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHIIM--------SKD 59
Query: 207 PE--TYDLFDDIILLSDAQIVYQGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQ 264
T LF +L ++V + F E + R FL + +Q
Sbjct: 60 AVSGTLRLFW-TLLSKQEEMVQK--------FVEEV-----LRINY-KFLMSPIKTEQRQ 104
Query: 265 QYWVHKEMPYR-FVTAQEF----SEAFQSFTVG-QKLADELRTPFDKCKSHPAALTTKMY 318
M R ++ ++ ++ F + V + +LR + + L +
Sbjct: 105 -----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 319 GVGKKELLKANISRELLLMKRNSF-VYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGI 377
G GK + ++ + + F ++ L +S V L
Sbjct: 160 GSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---------------- 202
Query: 378 YVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEV 437
+ + SD S I + R + Y L +
Sbjct: 203 ---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVL 250
Query: 438 A-VWVFLTYYVIGFDPNIGRLFKQFLL---LLLVNQMASALFRFIAAAGRNMIV----AM 489
V + + F L +LL + + F++AA I +M
Sbjct: 251 LNVQ----------NAKA---WNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSM 296
Query: 490 SFGSFVLLVLFA-FGG---------------FVLS------RDDIKKWWVWGYWCSPMMY 527
+ + L + LS RD + W W
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCD 353
Query: 528 AQNAIVANEFFGHSWRKFTSNSNETLGVQVLKSR----GFFPHAYW--------YWLGLG 575
I+ +S L + FP + W
Sbjct: 354 KLTTII-------------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW---- 396
Query: 576 ATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESES----NDLGNRIGGTAQLSTHGSNS 631
F++ + + +N+ K V ES + L
Sbjct: 397 --------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--------YLELKVKLE 440
Query: 632 S----HKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSV 687
+ H++ + +I L+ P H L E +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLI----------PPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 688 DMPKEMKLQ-GILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 746
+ + + L LE K+ + + +L TL + + YI
Sbjct: 491 TLFRMVFLDFRFLEQKIR-HDSTAWNASGSIL-----------NTLQQL---KFYKPYIC 535
Query: 747 GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLL 785
N Y + E+N I S + + L
Sbjct: 536 DNDPK--YERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-09
Identities = 87/570 (15%), Positives = 173/570 (30%), Gaps = 176/570 (30%)
Query: 594 FLNQFEK----------PRAVISDESESNDL---GNRIGGTAQL----STHGSNSSHKTC 636
F + F P++++S E E + + + + GT +L + K
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 637 SESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVT----YSVDMPKE 692
E ++ L+S + QP + E +++ Y+V +
Sbjct: 84 EEVLR----INYKFLMSP--IKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 693 MKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNI-- 749
L L+ L RP + GV G+GKT + +DV K + I
Sbjct: 137 YL---KLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 750 -TISGYPKK-------QETFTRISG-YCEQNDIHSPFVTVYESLLYSAWLR----LPP-- 794
+ Q+ +I + ++D S S+ A LR P
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYE 244
Query: 795 -------EV-DSETQKMF-----IEEIMELV---------ELNPLRQSLVGL-PGESGLS 831
V +++ F I L+ L+ + + L L+
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI----------VMRTVRNTVDTGRT 881
++ L+ ++D L +R T D +
Sbjct: 300 PDE------VKSLLLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 882 VVC----TIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFEGIP-GVENI- 935
V C TI + S+++ E E ++++ + IP + ++
Sbjct: 350 VNCDKLTTIIESSLNVLEP-AEY-------RKMF------DRLSVFPPSAHIPTILLSLI 395
Query: 936 ---KDGYNPATWMLEVTAKS------QELTLEIDFTDIY-----KGSELYRRNKALIEEL 981
+ + ++ S +E T+ I IY K Y ++++++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALHRSIVDHY 453
Query: 982 SRP--------APGSKDLYFPTH--YTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTT 1031
+ P P D YF +H + H + R
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGH---------------HLKNIEH----PERMTLFR 494
Query: 1032 VIALTFGTMFWDMGTKMKRNQDLFNAMGSM 1061
++ L F + + K++ + +NA GS+
Sbjct: 495 MVFLDFR---F-LEQKIRHDSTAWNASGSI 520
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-07
Identities = 56/399 (14%), Positives = 119/399 (29%), Gaps = 121/399 (30%)
Query: 16 LLALAGKLDSKL--KFSGR----VTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLA 69
LL L ++K F+ +T + +F+ T +IS + +T E +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKS 305
Query: 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG- 128
+ + R L P + + A + ++ D + V
Sbjct: 306 LLLKY--LDCRPQDLPREVL-----TTNP---RRLSIIAESI--RDGLATWDNWKHVNCD 353
Query: 129 -----LEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDE--ISTGLDSSTTF 181
+E + L E +K L++F I T
Sbjct: 354 KLTTIIESSLNVLEPAEY--------RKMFD--------RLSVFPPSAHIPTI-----LL 392
Query: 182 QIV--NSIRQNI-HILNGTAVISLL--QPAPETY---DLFDDIILLSD------AQIV-- 225
++ + I+ ++ ++N SL+ QP T ++ ++ + + IV
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 226 YQGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQ----- 280
Y P+ F+S P D QY+ + + + +
Sbjct: 453 YNIPKT-----FDSDDLIPPY----LD------------QYF-YSHIGHHLKNIEHPERM 490
Query: 281 -EFSEAFQSFT-VGQKL-------------ADELRTPFDK-----CKSHPA------ALT 314
F F F + QK+ + L+ C + P A+
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAIL 549
Query: 315 TKMYGVGKKELLKANISR--ELLLMKRNSFVYIFKLTQL 351
+ + + L+ + + + LM + ++ Q+
Sbjct: 550 DFLPKIEEN-LICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 761
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 762 TRIS---GYCEQNDIHSP---FV--TVYESLLYSAWLRLPPE---VDSETQKMFIEEIME 810
++ G Q+ P +VY+ + + + + + ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG------AVNMKLPEDEIRKRVDNALK 129
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ L+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 130 RTGIEHLKDKP---THC--LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 871 TVRN-TVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ + G T++ H + D +F+MK G
Sbjct: 185 LLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 49/273 (17%), Positives = 95/273 (34%), Gaps = 74/273 (27%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH-------- 55
+LG GK+TL G L SGR+ ++ +D ++ + +
Sbjct: 39 ILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKGIMKLRESIGIVFQDP 93
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D + +V + ++F A + E+ +R A
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA--------------------- 127
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------L 166
LK G+E + D+ +S GQKKRV A+A L
Sbjct: 128 --------LKRTGIEH-----LKDKPTHCLSFGQKKRV---------AIAGVLVMEPKVL 165
Query: 167 FMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVY 226
+DE + GLD +I+ + + + G +I D++ ++ + +++
Sbjct: 166 ILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224
Query: 227 QGPRELVL---DFFESMGFKCPERKGVADFLQE 256
QG + V + + + P + + L+E
Sbjct: 225 QGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPKKQETFT 762
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 763 R---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
R + G+ Q I P +T E+ +L + K E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L P E LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 LGDKLSRK---PYE--LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 874 NTVDTGRTVVCTIHQPSI 891
+ G ++V H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPK 756
E+ + L V+ + G ++MG SG+GK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 757 KQETFTR---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETQKMFIEE 807
+ T R I G+ Q N I P +T E+ L++ + + +
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSG-------EERRKR 124
Query: 808 IMELVELNPLRQSLVGL--------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
+E +++ L P + LS Q++R+ IA L NP II D+PT
Sbjct: 125 ALECLKM-------AELEERFANHKPNQ--LSGGQQQRVAIARALANNPPIILADQPTWA 175
Query: 860 LDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 891
LD++ +M+ ++ + G+TVV H ++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 9e-13
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 39/201 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ---- 758
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 759 ---ETFTRISGYCEQNDIHSPF--VTVYE-----------SLLYSAWLRLPPEVDSETQK 802
TF Q P +TV E S L S + + + E +
Sbjct: 83 GIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE 132
Query: 803 MFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 133 K-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 863 RAAAIVMRTVRNTVDTGRTVV 883
A + V G T +
Sbjct: 187 GLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 49/199 (24%), Positives = 70/199 (35%), Gaps = 47/199 (23%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVPQRTAAY-IS---QH 55
TL++GP SGK+TL+ + G K D GRV + + P Y I Q
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKADE-----GRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 56 DVHI-GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
EMTV E L C G + + ++E M A +
Sbjct: 91 -PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-----------MVEKAFK-- 136
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE----MMVGPALALFMDE 170
L+ L L + D +SGGQ K V E +M P + + MDE
Sbjct: 137 --------ILEFLKLSH-----LYDRKAGELSGGQMKLV---EIGRALMTNPKM-IVMDE 179
Query: 171 ISTGLDSSTTFQIVNSIRQ 189
G+ I N + +
Sbjct: 180 PIAGVAPGLAHDIFNHVLE 198
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 56/244 (22%), Positives = 91/244 (37%), Gaps = 70/244 (28%)
Query: 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT 730
L F+ + F+ V +S +E L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYADGRE------------TLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 731 TLM-------DVLAGRKTGGYITGNITISGYPKK---QETFTRISGYCEQ-----NDIHS 775
T++ D+ +G I I G Q + G Q ND
Sbjct: 95 TILRLLFRFYDISSGC---------IRIDGQDISQVTQASLRSHIGVVPQDTVLFND--- 142
Query: 776 PFVTVYESLLY---SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP------- 825
T+ +++ Y +A +E+ + + +++ P
Sbjct: 143 ---TIADNIRYGRVTAGN---------------DEVEAAAQAAGIHDAIMAFPEGYRTQV 184
Query: 826 GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
GE G LS +++R+ IA ++ P II +DE TS LD + ++ V RT +
Sbjct: 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTI 243
Query: 884 CTIH 887
H
Sbjct: 244 VVAH 247
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 51/245 (20%)
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
++ ++ F +V +S + L ++ G A
Sbjct: 1 GLESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCA 50
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKK---QETFTRISGYCEQ-----N 771
L+G +G+GK+T+ +L R Y G+I I G + + I G Q N
Sbjct: 51 LVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN 106
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP------ 825
+ T+ ++LY T EE+++ + L + LP
Sbjct: 107 E------TIKYNILYG--------KLDATD----EEVIKATKSAQLYDFIEALPKKWDTI 148
Query: 826 -GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 882
G G LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT+
Sbjct: 149 VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTL 207
Query: 883 VCTIH 887
+ H
Sbjct: 208 IIIAH 212
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 6e-11
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 51/202 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L +S +P + A G SG GK+T+ AG ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 759 ETFTRIS-----GYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIME 810
+ + G+ Q+ + T+ E+L Y L + E ++ +
Sbjct: 69 --ISLENWRSQIGFVSQD----SAIMAGTIRENLTYG----LEGDYTDE-------DLWQ 111
Query: 811 LVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+++L R + +P GE G +S QR+RL IA + NP I+ +DE T+ LD
Sbjct: 112 VLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171
Query: 862 ARAAAIVMRTVRNTVDTGRTVV 883
+ + ++V + + +++ GRT +
Sbjct: 172 SESESMVQKAL-DSLMKGRTTL 192
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 48/210 (22%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 752
D ++L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 753 GYPKKQETFT---RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIE 806
G+ R G Q+ + ++ +++ + P + +E
Sbjct: 70 GHDLALADPNWLRRQVGVVLQD----NVLLNRSIIDNISLAN-----PGMS-------VE 113
Query: 807 EIMELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPT 857
+++ +L + L GE G LS QR+R+ IA LV NP I+ DE T
Sbjct: 114 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 173
Query: 858 SGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
S LD + ++MR + GRTV+ H
Sbjct: 174 SALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 7e-10
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 30/165 (18%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR 763
+LLN + + G +G GK+TLM +A + G+ T ++ T
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPT--------QEECRT--- 497
Query: 764 ISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL- 821
Y E + D +V + + E T++ I++ + ++
Sbjct: 498 --VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP 545
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
+ S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 I-----SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 48/207 (23%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L G++ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 759 ---ETFTRISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
I G Q P + T+ E++ Y + T +EI + V
Sbjct: 457 INVRYLREIIGVVSQE----PVLFATTIAENIRYGR--------EDVTM----DEIEKAV 500
Query: 813 ELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++ LP GE G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPS 890
+ A+V + GRT + H+ S
Sbjct: 561 SEAVVQAALDK-AREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 40/201 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 759 ETFTRISGYCEQNDIHS--PFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
+ Q I S P + ++ E++ Y V S + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYG----DNSRVVSYEE---IVRAAKEAN 1149
Query: 814 LNPLRQSL-------VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
++ SL VG G + LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 867 IVMRTVRNTVDTGRTVVCTIH 887
+V + + GRT + H
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAH 1228
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 47/205 (22%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L G++ PG +TAL+G +G+GK+T+ G+ + + G P Q
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 759 ---ETFTRISGYCEQNDIHSP--F-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
Q P F + E++ Y + T EEI +
Sbjct: 86 YDHHYLHTQVAAVGQE----PLLFGRSFRENIAYGL-------TRTPTM----EEITAVA 130
Query: 813 ELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ + G P GE+G LS QR+ + +A L+ P ++ +D TS LDA
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 864 AAAIVMRTV-RNTVDTGRTVVCTIH 887
V R + + RTV+
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 720 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQNDIHSP 776
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836
++VY ++ Y LR V+ + + + E+ E + + L P LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRK---PAR--LSGGERQ 133
Query: 837 RLTIAVELVANPSIIFMDEPTSGLDAR 863
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 5e-08
Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 54/184 (29%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 759 ETFTRIS-----GYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
+T S Q ND TV ++ Y+ E S E+I
Sbjct: 410 --YTLASLRNQVALVSQNVHLFND------TVANNIAYAR-----TEEYSR------EQI 450
Query: 809 MELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
E + + + GE+G LS QR+R+ IA L+ + I+ +DE TS
Sbjct: 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 860 LDAR 863
LD
Sbjct: 511 LDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 54/184 (29%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L+ VS + G AL+G SG+GK+T+ DV +G I + G+ +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLDGHDVRD 409
Query: 759 ETFTRIS-----GYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
+ + Q ND T+ ++ Y+A E E +I
Sbjct: 410 --YKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTRE-------QI 450
Query: 809 MELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
+ + + +P GE+G LS QR+R+ IA L+ + ++ +DE TS
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 860 LDAR 863
LD
Sbjct: 511 LDTE 514
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 33/170 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
+ GVS R G + L+G SG+GKTT++ ++AG R T G ++ I G + T
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG----DVWIGG-----KRVTD 81
Query: 764 ISGYCEQNDIHSPFV----------TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
+ + ++ V TVY+++ + + P+ + + + + E++ +
Sbjct: 82 LPPQ--KRNVG--LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMR 134
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
L P E LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 135 LESYANRF---PHE--LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 51/188 (27%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 752
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 753 GYPKKQETFTRIS-----GYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMF 804
G+ K F S G +Q+ + TV E++L P ++
Sbjct: 402 GHNIKD--FLTGSLRNQIGLVQQD----NILFSDTVKENILLGR-----PTA-TD----- 444
Query: 805 IEEIMELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDE 855
EE++E ++ ++ LP GE G LS Q++RL+IA + NP I+ +DE
Sbjct: 445 -EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 503
Query: 856 PTSGLDAR 863
TS LD
Sbjct: 504 ATSALDLE 511
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 28/170 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNITISGYPK 756
L+ V+ G ++G SGAGKTT M ++AG + G + N + P+
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 757 KQET---FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
++ F Q P +T +E++ + L E +K +EE+ ++++
Sbjct: 81 DRKIGMVF--------QTWALYPNLTAFENIAFP--LTNMKMSKEEIRKR-VEEVAKILD 129
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
++ + L P E LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 130 IHHV---LNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
LN +S + PG + ++G SG GKTTL+ LAG + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 763 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R GY Q P +TVY ++ Y L ++ ++ IE ++EL ++ L
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYG--LGNGKGRTAQERQR-IEAMLELTGISELAGR 134
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P E LS Q++R +A L +P +I +DEP S LD +
Sbjct: 135 Y---PHE--LSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 52/206 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----------- 82
Query: 766 GYCEQNDIHSPFVTVY-----------ESLLYSAWLRL---PPEVDSETQKMFIEEIMEL 811
S +T+ + ++S R P S+ + I ++ +
Sbjct: 83 ------SWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---IWKVADE 131
Query: 812 VELNPLRQSLVGLPG-------ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
V L R + PG + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 132 VGL---RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
Query: 863 RAAAIVMRTVRNTVDTGRTVVCTIHQ 888
I+ RT++ TV+ +
Sbjct: 189 VTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 14/158 (8%)
Query: 767 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
++ +A ++ + + E+V + + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 827 ESG------LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
E LS +R L +A L S++ +DEPT LD ++ +
Sbjct: 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Query: 875 TVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYV 912
+ V+ H ++ ++ D + + V
Sbjct: 300 YLKKIPQVILVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 763 RIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEE-IMELVELNPLR 818
R G Q N + S TV+ ++ L L T K ++ + EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LEL-----DNTPKDEVKRRVTELLSL---- 150
Query: 819 QSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
VGL + S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ---VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 50/198 (25%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 753
+ + +L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 14 DGE-TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENIL 70
Query: 754 -----------------YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 796
YP + G VT+ L + +L EV
Sbjct: 71 ELSPDERARKGLFLAFQYP------VEVPG-----------VTIANFLRLALQAKLGREV 113
Query: 797 DSETQKMFIEEIMELVELNP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
+++ +EL++ + L + L G S ++KR I LV P+ +D
Sbjct: 114 GVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPTYAVLD 168
Query: 855 EPTSGLDARAAAIVMRTV 872
E SGLD A +V R V
Sbjct: 169 ETDSGLDIDALKVVARGV 186
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 40/199 (20%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNIT----- 750
+ + G+ G + L+G +GAGKTT + +AG R G I +IT
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 751 ------ISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMF 804
I+ P+ + F P +TVYE+L+ A+ R D E K
Sbjct: 77 VINRMGIALVPEGRRIF--------------PELTVYENLMMGAYNRK----DKEGIKRD 118
Query: 805 IEEIMELV-ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+E I L L + L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 119 LEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI 173
Query: 864 AAAIVMRTVRNTVDTGRTV 882
+ V ++ G T+
Sbjct: 174 LVSEVFEVIQKINQEGTTI 192
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 40/216 (18%), Positives = 86/216 (39%), Gaps = 50/216 (23%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 764 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQ 819
IS +C Q + ++ T+ E+++ ++ + +++ +L + +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISK 144
Query: 820 SLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
GE G LS QR R+++A + + + +D P LD +
Sbjct: 145 ----FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Query: 871 TVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ + +T + + ++ + D++ ++ G
Sbjct: 201 SCVCKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 49/270 (18%), Positives = 86/270 (31%), Gaps = 119/270 (44%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVR 65
G +GKT+LL+ + G+L+ G++ ++G ++ SQ + I T++
Sbjct: 71 GSTGAGKTSLLMMIMGELE---PSEGKIKHSG----------RISFCSQ-NSWIMPGTIK 116
Query: 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLK 125
E + +G YD Y
Sbjct: 117 ENI--------IGVSYD-------------------------------------EYRYRS 131
Query: 126 VLGLEVC------------DDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALA------ 165
V ++ C D+ ++G+ GI SGGQ+ R+ +LA
Sbjct: 132 V--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI---------SLARAVYKD 177
Query: 166 ----LFMDEISTGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPETYDLFD 214
L LD T +I S + + ++ I L+ A D
Sbjct: 178 ADLYLLDSPFG-YLDVLTEKEIFESCVCK---LMANKTRILVTSKMEHLKKA-------D 226
Query: 215 DIILLSDAQIVYQGP-RELV---LDFFESM 240
I++L + + G EL DF +
Sbjct: 227 KILILHEGSSYFYGTFSELQNLRPDFSSKL 256
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 40/215 (18%), Positives = 82/215 (38%), Gaps = 47/215 (21%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 764 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
IS +C Q ++ T+ E++++ +++ L +
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF-------------GVSYDEYRYRSVIKACQLEED 112
Query: 821 LVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
+ GE G LS QR R+++A + + + +D P LD + +
Sbjct: 113 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 872 VRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ +T + + ++ + D++ ++ G
Sbjct: 173 CVCKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 50/270 (18%), Positives = 85/270 (31%), Gaps = 118/270 (43%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVR 65
G +GKT+LL+ + G+L+ G++ ++G ++ SQ I T++
Sbjct: 41 GSTGAGKTSLLMMIMGELE---PSEGKIKHSG----------RISFCSQF-SWIMPGTIK 86
Query: 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLK 125
E + F G YD Y
Sbjct: 87 ENIIF-------GVSYD-------------------------------------EYRYRS 102
Query: 126 VLGLEVC------------DDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALA------ 165
V ++ C D+ ++G+ GI SGGQ+ R+ +LA
Sbjct: 103 V--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI---------SLARAVYKD 148
Query: 166 ----LFMDEISTGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPETYDLFD 214
L LD T +I S + + ++ I L+ A D
Sbjct: 149 ADLYLLDSPFGY-LDVLTEKEIFESCVCK---LMANKTRILVTSKMEHLKKA-------D 197
Query: 215 DIILLSDAQIVYQGP-RELV---LDFFESM 240
I++L + + G EL DF +
Sbjct: 198 KILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 51/218 (23%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 764 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQ 819
++ Y Q ++ ++ E++L+ + ++ + +++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 820 SLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
LP GE G LS Q++R+++A + +N I D+P S +DA +
Sbjct: 113 ----LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 871 TV--RNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
V + +T + H + D + +M G
Sbjct: 169 NVIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 61/292 (20%), Positives = 93/292 (31%), Gaps = 124/292 (42%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVR 65
G GK++LL AL ++D K G V G + AY+ Q I ++R
Sbjct: 38 GQVGCGKSSLLSALLAEMD---KVEGHVAIKG----------SVAYVPQQ-AWIQNDSLR 83
Query: 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLK 125
E + F G + + YY
Sbjct: 84 ENILF-------GCQLE-------------------------------------EPYYRS 99
Query: 126 VLGLEVC------------DDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALA------ 165
V ++ C D T +G+ +G+ SGGQK+RV +LA
Sbjct: 100 V--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV---------SLARAVYSN 145
Query: 166 ----LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDD 215
LF D +S +D+ I ++ +L I S L D
Sbjct: 146 ADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV-------DV 197
Query: 216 IILLSDAQIVYQGP-RELVLDFFESMGFKCPERKG-VADFLQEVTSRKDQQQ 265
II++S +I G +EL+ R G A+FL+ S
Sbjct: 198 IIVMSGGKISEMGSYQELL------------ARDGAFAEFLRTYASHHHHHH 237
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 55/193 (28%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---------- 753
L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPED 93
Query: 754 -----------YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAW-----LRLPPEVD 797
YP I G V+ L +A R +D
Sbjct: 94 RAGEGIFMAFQYP------VEIPG-----------VSNQF-FLQTALNAVRSYRGQETLD 135
Query: 798 SETQKMFIEEIMELVELNP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855
+ +EE + L+++ L +S+ G S ++KR I V P + +DE
Sbjct: 136 RFDFQDLMEEKIALLKMPEDLLTRSV-----NVGFSGGEKKRNDILQMAVLEPELCILDE 190
Query: 856 PTSGLDARAAAIV 868
SGLD A +V
Sbjct: 191 SDSGLDIDALKVV 203
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEE----IMELVELNPLR 818
+ QN P + V ++L + +R+ +K+ + +++ L
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARDLKIEHLL 121
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 122 DRN---PLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQET---FTRISGYCEQ 770
L+G SG+GK+TL+ +AG T G I PK + F Q
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKDRNVGLVF--------Q 82
Query: 771 NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830
N P +TVY+++ + LR + E + E+ +++ ++ L L P + L
Sbjct: 83 NWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKL---LNRYPWQ--L 134
Query: 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 871
S Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQE---TFTRISGYCEQ 770
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 771 NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830
+ P +TVYE++ + ++ + + + EL+++ L L P + L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL---LNRYPAQ--L 142
Query: 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 871
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 20/95 (21%)
Query: 826 GESGLSTEQR----KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
GE RL +++ L S++ +DEPT LD ++ + +
Sbjct: 61 GER-----IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 882 VVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLG 916
V+ H ++ ++ D + I +
Sbjct: 116 VILVSHDE--ELKDAADHV---------IRISLEN 139
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 34/163 (20%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQET---FTRISGYCEQ 770
L+G SG GKTT + +LAG T G I PK +E F Q
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKYREVGMVF--------Q 82
Query: 771 NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830
N P +TV+E++ + LR E +K + EI + ++ L L P + L
Sbjct: 83 NYALYPHMTVFENIAFP--LRARRISKDEVEKR-VVEIARKLLIDNL---LDRKPTQ--L 134
Query: 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 871
S Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 36/204 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFTRI 764
L GVS R G + +++G SG+GK+T + + + G I ++G
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQ 79
Query: 765 SGYCEQNDIHS---------------PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
++N + +TV E+++ + P +V ++ E +
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERAL 134
Query: 810 ELVELNPLRQSLVGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ + VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 135 KYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIH 887
V+R ++ + G+T+V H
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTH 211
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1275 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-12 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-10 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-16 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-25 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-18 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-10 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-11 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-15 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-13 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-12 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-12 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-15 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-11 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-10 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-20 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-15 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-12 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-10 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-08 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-10 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-11 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.003 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.003 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 2e-28
Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 12/213 (5%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPK 756
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 757 KQETFTRIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
+ T R G+ Q P +T E++ + + E ++ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ P + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 --EERFANHKPNQ--LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 875 TVD-TGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+ G+TVV H I++ + + +K G
Sbjct: 191 LNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 64.1 bits (156), Expect = 9e-12
Identities = 38/233 (16%), Positives = 81/233 (34%), Gaps = 47/233 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA-------AYISQHD 56
++GP SGK+T+L + LD G V + ++ ++ Q
Sbjct: 36 IMGPSGSGKSTMLNIIGC-LDKP--TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
I +T E + + G ++ E+ + A E +
Sbjct: 93 NLIPLLTALENVELPLIFKYRG-------AMSGEER--------------RKRALECLKM 131
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L + + + +SGGQ++RV + + D+ + LD
Sbjct: 132 AELEERFA--------------NHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229
S T +I+ +++ ++ +G V+ ++ + II L D ++ +
Sbjct: 178 SKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 109 bits (274), Expect = 2e-27
Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 11/203 (5%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
+ G+ G + L+G +GAGKTT + +AG R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
+ P +TVYE+L+ A+ R E ++ L + L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 884 CTIHQPSIDIFESFDELFLMKRG 906
+ ++++ G
Sbjct: 194 LVEQNAL-GALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 59.9 bits (145), Expect = 2e-10
Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 42/233 (18%)
Query: 4 LLGPPCSGKTTLLLALAGKLD-SKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEM 62
L+G +GKTT L A+AG + K K + + + A + + E+
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
TV E L A + + R +
Sbjct: 97 TVYENLMMGAYNRKDKE------GIKRDLEWI---------------------------- 122
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
+ L+ L G +SGG+++ + G ++ L MDE S GL +
Sbjct: 123 FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+ I++ GT ++ + Q A + +L QIV +G +LD
Sbjct: 178 VFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (275), Expect = 3e-27
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 12/210 (5%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFI-------EEIMELVELNP 816
Q +TV E+LL ++S K +I E+ +++E
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
L GE LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 877 DTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
G T + H+ + D L++M G
Sbjct: 198 AKGITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 78.1 bits (192), Expect = 2e-16
Identities = 49/236 (20%), Positives = 82/236 (34%), Gaps = 35/236 (14%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHI 59
++GP SGK+TL+ + G L + GRV + + P Q +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
EMTV E L C G + + ++E M A +
Sbjct: 92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-----------MVEKAFK------- 133
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
L+ L L D G+ +SGGQ K V G ++ + MDE G+
Sbjct: 134 ---ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
I N + + G + + + D + ++ + QI+ +G E +
Sbjct: 186 AHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 104 bits (262), Expect = 1e-25
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 17/205 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ-ETFT 762
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYLPPKD 77
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R Q+ P +TVYE++ + ++ + + + EL+++ L
Sbjct: 78 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP 134
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 881
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ T
Sbjct: 135 -----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 189
Query: 882 VVCTIHQPSIDIFESFDELFLMKRG 906
+ H + D + +M RG
Sbjct: 190 TIYVTHDQV-EAMTMGDRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 84.1 bits (208), Expect = 2e-18
Identities = 53/253 (20%), Positives = 92/253 (36%), Gaps = 54/253 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHIGEM 62
LLGP GKTT L +AG + GR+ + + P+ R + + Q M
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
TV E +AF + + E+ +R + A
Sbjct: 94 TVYENIAFPLKIKKFPKD-----EIDKRVRWA---------------------------- 120
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
++L +E + + +SGGQ++RV +V L MDE + LD+
Sbjct: 121 -AELLQIEE-----LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ I++ + I + E + D I +++ Q++ G P E+
Sbjct: 175 MRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV--------- 224
Query: 242 FKCPERKGVADFL 254
+ P VA F+
Sbjct: 225 YLRPNSVFVATFI 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 103 bits (259), Expect = 4e-25
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 21/215 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 763 RIS-----------GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL 811
Q+ +TV E+++ A +++ + ++ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
V ++ Q P LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGK--YPVH--LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 872 VRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
++ + G+T+V H+ + + +G
Sbjct: 192 MQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 60.6 bits (147), Expect = 2e-10
Identities = 43/268 (16%), Positives = 82/268 (30%), Gaps = 66/268 (24%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ----------------R 47
++G SGK+T L + G + NG ++ +
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 48 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMK 107
+ QH MTV E + + S+ + R +
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----HDARERALKY------------- 132
Query: 108 AAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALF 167
L +G+ D + +SGGQ++RV+ + L
Sbjct: 133 ----------------LAKVGI----DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 168 MDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQ 227
DE ++ LD +++ ++Q G ++ + + +I L +I +
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230
Query: 228 GPRELVLDFFESMGFKCPERKGVADFLQ 255
G E V F P+ + FL+
Sbjct: 231 GDPEQV--------FGNPQSPRLQQFLK 250
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (250), Expect = 1e-24
Identities = 38/187 (20%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
+ + I ++V + L A L +E I + +E VE+ L++ L
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IMDALESVEVLDLKKKL---- 123
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 884
LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 124 --GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 885 TIHQPSI 891
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 61.5 bits (149), Expect = 5e-11
Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 48/201 (23%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ GP GKTTLL ++ L G + YNG + ++ + +
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGV--PITKVKGKIFFLPEEIIVPR 83
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+++V + L A GV + + +
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDA--------------------------------- 110
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
L+ + + + +S G +RV ++ A +D+ +D +
Sbjct: 111 ---LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 181 FQIVNSIRQNIHILNGTAVIS 201
+++ SI + I G +IS
Sbjct: 162 HKVLKSILE-ILKEKGIVIIS 181
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (254), Expect = 3e-24
Identities = 38/203 (18%), Positives = 78/203 (38%), Gaps = 23/203 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
+C Q P T+ E++++ D K ++ ++ + +
Sbjct: 100 SFCSQFSWIMPG-TIKENIIF------GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 152
Query: 826 GE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
GE LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 153 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 884 CTIHQPSIDIFESFDELFLMKRG 906
+ D++ ++ +G
Sbjct: 213 LVTSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.6 bits (183), Expect = 5e-15
Identities = 48/268 (17%), Positives = 84/268 (31%), Gaps = 60/268 (22%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
M + G SGKT+LL+ + G+L++ G + ++G F Q I
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--VSFCSQ---------FSWIM 109
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
T++E + F K ++
Sbjct: 110 PGTIKENIIFGVSYDEY--------RYKSVVKACQLQ----------------------- 138
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
+ D+T++G+ V +SGGQ+ R++ + A +D LD T
Sbjct: 139 ---QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL------- 232
Q+ S + N T ++ + E D I++L + G EL
Sbjct: 195 EQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 251
Query: 233 VLDFFESMGFKCPERKGVADFLQEVTSR 260
F + + L E R
Sbjct: 252 SSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (250), Expect = 4e-24
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G+S G + L+G +GAGKTT + +++ + + G +T + ++ +
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPHEVRK 75
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
+ Y + + E L + A S + +E E+ L + V
Sbjct: 76 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV- 131
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
S S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++
Sbjct: 132 ----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187
Query: 884 CTIHQPSIDIFESFDELFLMKRG 906
+ H ++ D + L+ G
Sbjct: 188 VSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 68.1 bits (166), Expect = 4e-13
Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 56/258 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTAAYISQHDVHIGE 61
L+GP +GKTT L ++ + SG VT G + E + + +Y+ +
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
M E L F A S E + +
Sbjct: 90 MQGIEYLRFVAGFYASSSS----------------------------------EIEEMVE 115
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 181
++ GL + V S G +++ ++ +DE ++GLD
Sbjct: 116 RATEIAGLGE-----KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 182 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESM 240
++ ++Q T ++S E L D I L+ + IV G EL
Sbjct: 171 EVRKILKQ-ASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEEL-------- 220
Query: 241 GFKCPERKGVADFLQEVT 258
+ + + + + +EV
Sbjct: 221 -KERYKAQNIEEVFEEVV 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.4 bits (245), Expect = 2e-23
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 14/206 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQET-F 761
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ TV+ ++ L P+ + + + + E++ LV L S
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLVGLGDKHDSY 137
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 880
P LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 138 ---PSN--LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRG 906
T++ H+ + + D + ++ G
Sbjct: 193 TILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 66.1 bits (161), Expect = 2e-12
Identities = 43/238 (18%), Positives = 76/238 (31%), Gaps = 49/238 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA------AYISQHDV 57
++G +GK+TL+ + G V +G + I QH
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ TV +A E+ RR E
Sbjct: 93 LLSSRTVFGNVALPLELDNTPKD-----EVKRRVTEL----------------------- 124
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
L ++GL D +SGGQK+RV + L DE ++ LD
Sbjct: 125 ------LSLVGLG-----DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+TT I+ ++ L T ++ + + D + ++S+ +++ Q V
Sbjct: 174 ATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.4 bits (245), Expect = 3e-23
Identities = 47/234 (20%), Positives = 90/234 (38%), Gaps = 26/234 (11%)
Query: 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 737
L F VT++ ++ L ++ G AL+G SG+GK+T+ ++
Sbjct: 14 LEFRNVTFTYP-----------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 738 GRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 794
G+I + G+ ++ + QN
Sbjct: 63 RFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSIIF 852
+++ + + M+ + L + GE+G LS QR+R+ IA L+ + I+
Sbjct: 121 QIEEAAR---MAYAMDFINKMD--NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 175
Query: 853 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
+DE TS LD + + + + RT + H+ S E DE+ +++ G
Sbjct: 176 LDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 66.0 bits (161), Expect = 3e-12
Identities = 46/236 (19%), Positives = 93/236 (39%), Gaps = 42/236 (17%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTAAYISQHDVH 58
L+G SGK+T+ + D G + +GH + E+ R + +VH
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH 99
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+ TV +A Y E +R + E + A A +
Sbjct: 100 LFNDTVANNIA-----------YARTEEYSREQIEEAAR---------MAYAMD------ 133
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+ ++ DT++G E +SGGQ++R+ ++ + L +DE ++ LD+
Sbjct: 134 ------FINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 186
Query: 179 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
+ I ++ + + + ++ T + D+I+++ D IV +G +L
Sbjct: 187 SERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 238
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 96.8 bits (241), Expect = 1e-22
Identities = 54/244 (22%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT 730
+ + + D V++ + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 731 TLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCE--QNDIHSPFVTVYESLLYSA 788
TL++++ +G I I G+ K + Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG- 115
Query: 789 WLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG----LPGESG--LSTEQRKRLTIAV 842
P D E + E ++ + +L GE G LS Q++RL+IA
Sbjct: 116 ---RPTATDEE-----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167
Query: 843 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFL 902
+ NP I+ +DE TS LD + +I+ + + RT + H+ S D++ +
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVV 224
Query: 903 MKRG 906
++ G
Sbjct: 225 IENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 73.7 bits (181), Expect = 7e-15
Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 43/237 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYIS--QHDVH 58
+G GK+TL+ + D SG++ +GH + +F+ I Q D
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 102
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+ TV+E + G E+ K A
Sbjct: 103 LFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------------------- 136
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
++ L DT VG E +SGGQK+R++ + + L +DE ++ LD
Sbjct: 137 -------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 179 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+ I ++ + + ++ T D I+++ + IV G ++
Sbjct: 189 SESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 94.2 bits (234), Expect = 5e-22
Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 23/231 (9%)
Query: 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 738
TF + + D ++L+ ++ + + G + ++G SG+GK+TL ++
Sbjct: 3 TFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 739 RKTGGYITGNITISGYP---KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 795
+ I G+ R G Q D ++ +++ +
Sbjct: 52 FYIPENGQ--VLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGMS 105
Query: 796 VDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855
V+ + + + + + +GLS QR+R+ IA LV NP I+ DE
Sbjct: 106 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 856 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
TS LD + ++MR + + GRTV+ H+ S ++ D + +M++G
Sbjct: 166 ATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 62.6 bits (152), Expect = 3e-11
Identities = 46/238 (19%), Positives = 90/238 (37%), Gaps = 45/238 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDEFVPQRTAAYISQHDV 57
+ ++G SGK+TL + + +G+V +GH D +R + Q D
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQ-DN 86
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ ++ + ++ + + ++ K AG
Sbjct: 87 VLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGAH-------------------- 119
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ L +T+VG++ +SGGQ++R+ +V L DE ++ LD
Sbjct: 120 ------DFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDY 172
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+ I+ ++ + I G VI + T D II++ +IV QG + +L
Sbjct: 173 ESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 93.8 bits (233), Expect = 7e-22
Identities = 42/211 (19%), Positives = 84/211 (39%), Gaps = 27/211 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L +SG R G + L+G +GAGK+TL+ +AG +G G+I +G P + + T+++
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 766 ---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
Y Q V+ L + T+ + ++ + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 823 GLPGESGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 876 VDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906
G +V + H + +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 59.2 bits (143), Expect = 4e-10
Identities = 45/242 (18%), Positives = 73/242 (30%), Gaps = 60/242 (24%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA---AYISQHDVHIG 60
L+GP +GK+TLL +AG G + + G ++ + + A AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
V L + L
Sbjct: 86 ATPVWHYLTLHQH---------------------------------------DKTRTELL 106
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-------LFMDEIST 173
+ L L DD L +SGG+ +RV +++ L +DE
Sbjct: 107 NDVAGALAL---DDKL--GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 161
Query: 174 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233
LD + + + G A++ T LL +++ G RE V
Sbjct: 162 SLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
Query: 234 LD 235
L
Sbjct: 220 LT 221
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (224), Expect = 2e-20
Identities = 51/244 (20%), Positives = 100/244 (40%), Gaps = 22/244 (9%)
Query: 668 GMVLPFEPH-SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSG 726
G++ P + F +V+++ ++ + L G++ RPG +TAL+G +G
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNG 50
Query: 727 AGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYES 783
+GK+T+ +L + TGG + + Y + R Q ++ E+
Sbjct: 51 SGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQEPQVFGR-SLQEN 107
Query: 784 LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVE 843
+ Y L P ++ T + P S LS QR+ + +A
Sbjct: 108 IAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165
Query: 844 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFL 902
L+ P ++ +D+ TS LDA + V + + + + R+V+ S + E D +
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILF 223
Query: 903 MKRG 906
++ G
Sbjct: 224 LEGG 227
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.6 bits (183), Expect = 4e-15
Identities = 42/238 (17%), Positives = 91/238 (38%), Gaps = 42/238 (17%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
+T L+GP SGK+T+ L G++ +G + ++ + R A + Q +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EP 97
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ +++E +A+ G+ P ++ AA G
Sbjct: 98 QVFGRSLQENIAY------------------------GLTQKPTMEEITAAAVKSGAH-- 131
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ GL DT V E +SGGQ++ V ++ L +D+ ++ LD+
Sbjct: 132 ------SFISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
++ Q+ + ++ + + ++ + D I+ L I G + +++
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.6 bits (217), Expect = 1e-19
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
G+ Q+ T+ E+L Y L + E ++ + + L
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTY----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 823 GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
GE G +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GR
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGR 189
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRG 906
T + H+ S D+++ +++G
Sbjct: 190 TTLVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 64.9 bits (158), Expect = 6e-12
Identities = 47/236 (19%), Positives = 76/236 (32%), Gaps = 43/236 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYIS--QHDVH 58
+ GP GK+T+ L +G +T +G +D + + I D
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
I T+RE L + + +LA PD
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD------------------- 127
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+T VG E ISGGQ++R+ + L +DE + LDS
Sbjct: 128 -------------QLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 179 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELV 233
+ + ++ ++ G + + T D I + QI G ELV
Sbjct: 174 SESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQITGSGKHNELV 225
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 13/203 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPAERG 73
Query: 766 -GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
G Q+ P ++V E++ + L + E + ++ E+++L L
Sbjct: 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQRVNQVAEVLQLAHLLDRKP-- 128
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 883
LS QR+R+ I LVA PS+ +DEP S LDA + + GRT++
Sbjct: 129 ---KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 185
Query: 884 CTIHQPSIDIFESFDELFLMKRG 906
H D++ ++ G
Sbjct: 186 YVTHDQVE-AMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 61.1 bits (148), Expect = 1e-10
Identities = 52/253 (20%), Positives = 88/253 (34%), Gaps = 54/253 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA-AYISQHDVHIGEM 62
+GP GK+TLL +AG SG + M++ P + Q +
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
+V E ++F + G + +R +
Sbjct: 88 SVAENMSFGLKLAGAKKE-----VINQRVNQV---------------------------- 114
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
+VL L + D + +SGGQ++RV G +V +DE + LD++ Q
Sbjct: 115 -AEVLQLAH-----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ I + L T + E L D I++L ++ G P EL
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL--------- 218
Query: 242 FKCPERKGVADFL 254
+ P + VA F+
Sbjct: 219 YHYPADRFVAGFI 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.2 bits (208), Expect = 1e-18
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 15/207 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE---T 760
+ +S + G L+G SG GKTT + ++AG + G I + P+K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R Q+ P +TVY+++ + LR +V + + E+ EL+ L L
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR 135
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 879
P E LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 136 ---KPRE--LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 880 RTVVCTIHQPSIDIFESFDELFLMKRG 906
T + H + D + +M RG
Sbjct: 191 VTTIYVTHDQV-EAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 54.9 bits (132), Expect = 1e-08
Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 44/251 (17%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
LLGP GKTT L +AG + G++ + ++ D I +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVA---DPEKGIFVPPKDRDIAMVF 87
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
L + L ++ R+E + +
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV------------------------REV 123
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
++LGL + + R +SGGQ++RV G +V MDE + LD+ ++
Sbjct: 124 AELLGLTE-----LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 184 VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGFK 243
+++ L T + E + D I +++ + G + V +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEV--------YD 229
Query: 244 CPERKGVADFL 254
P VA F+
Sbjct: 230 KPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 82.8 bits (204), Expect = 5e-18
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 14/206 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET--F 761
L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q P +T +E++ + P +++ + + E+ ++ + L
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 880
P E LS Q++R+ +A LV +PS++ +DEP S LDAR V+ G
Sbjct: 135 NHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 881 TVVCTIHQPSIDIFESFDELFLMKRG 906
T++ H P+ DIF D + ++ +G
Sbjct: 193 TLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 58.6 bits (141), Expect = 8e-10
Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 59/258 (22%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ------RTAAYISQHDV 57
+LGP +GKTT + +AG +G + ++ + R + Q
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+T E +AF + + +R +E
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEE-----IRKRVEEV----------------------- 124
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
++ D V + R +SG Q++RV +V L +DE + LD+
Sbjct: 125 -----------AKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDF 236
+++ L T ++ PA + + + D + +L ++V G P +L
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL---- 228
Query: 237 FESMGFKCPERKGVADFL 254
+ P VA +
Sbjct: 229 -----YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.6 bits (180), Expect = 5e-15
Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 16/203 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFTRI 764
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
+ QN P + V ++L + ++ + + +++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 883
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 PLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 884 CTIHQPSIDIFESFDELFLMKRG 906
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 61.2 bits (148), Expect = 8e-11
Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 57/253 (22%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQR-TAAYISQHDVHIGEM 62
+LGP +GKT L +AG SGR+ +G + + P++ A++ Q+ M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
V++ L F R + + +R +
Sbjct: 88 NVKKNLEFGMRMKKIKDP--------KRVLDT---------------------------- 111
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
+ L +E D +SGG+++RV +V L +DE + LD T +
Sbjct: 112 -ARDLKIEHL-----LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP-RTQE 164
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ +H N V+ + E + D I ++ D +++ G P E+
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI--------- 215
Query: 242 FKCPERKGVADFL 254
F+ P VA F+
Sbjct: 216 FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.3 bits (164), Expect = 7e-13
Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQN 771
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831
P ++VY ++ Y V+ + + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLS 128
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 890
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 891 IDIFESFDELFLMKRG 906
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.6 bits (144), Expect = 3e-10
Identities = 45/252 (17%), Positives = 84/252 (33%), Gaps = 55/252 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA-AYISQHDVHIGEM 62
LLGP +GK+ L +AG + G V NG + P+R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
+V +A+ R R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
E + D +SGG+++RV +V L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGF 242
++ +R + + E L D++ ++ + +IV +G + +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 243 KCPERKGVADFL 254
+ VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 23/201 (11%), Positives = 46/201 (22%), Gaps = 42/201 (20%)
Query: 720 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSP 776
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836
+ + + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES 896
+I +DE + + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 897 FDELFLMKRGGQEIYVGPLGR 917
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEM 62
++ G P GKTTL+ + +L + + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 63 TVRETLAFSARCQGVGSRYDML 84
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 0.001
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 19/143 (13%)
Query: 770 QNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ + +Y L +A L + E + + L +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
G + L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 879 GRTVVCTIHQPSIDIFESFDELF 901
+ + +FE D L
Sbjct: 386 DLQFIVISLKN--TMFEKSDALV 406
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.003
Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 6/133 (4%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVR 65
+GKTTLL L L ++ R H + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLK 125
+ A ++ + + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 126 VLGLEVCDDTLVG 138
L D ++
Sbjct: 126 ELV---IDRHVIA 135
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (87), Expect = 0.003
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
+ G +GKT+L+ +L + +S T + + ++
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVD--FPGHVKLRYKLS 64
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
Y L VDS + E +
Sbjct: 65 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLV 98
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1275 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.42 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.42 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.1 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.04 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.98 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.86 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.81 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.58 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.88 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.84 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.73 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.71 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.28 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.18 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.97 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.96 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.96 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.95 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.92 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.84 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.83 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.78 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.71 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.71 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.67 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.65 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.61 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.59 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.57 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.57 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.52 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.52 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.5 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.46 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.45 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.43 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.35 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.31 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.3 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.3 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.29 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.28 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.26 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.25 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.24 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.24 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.24 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.23 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.22 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.2 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.19 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.18 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.17 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.17 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.16 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.15 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.11 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.11 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.09 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.08 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.08 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.07 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.06 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.05 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.05 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.04 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.04 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.02 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.02 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.01 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.99 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.97 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.95 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.93 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.93 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.92 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.92 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.92 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.91 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.89 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.88 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.86 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.86 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.85 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.85 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.84 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.84 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.83 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.81 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.81 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.81 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.8 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.77 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.77 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.76 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.75 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.72 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.7 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.7 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.65 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.65 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.64 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.61 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.61 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.59 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.59 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.59 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.58 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.52 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.51 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.51 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.48 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.48 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.48 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.48 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.48 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.45 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.44 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.44 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.41 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.4 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.39 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.37 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.33 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.33 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.33 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.32 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.32 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.27 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.24 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.23 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.23 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.23 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.22 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.21 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.21 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.19 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.19 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.18 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.18 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.18 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.17 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.17 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.15 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.15 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.13 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.13 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.13 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.1 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.07 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.05 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.01 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.01 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.96 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.96 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.94 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.93 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.92 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.9 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.88 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.88 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.88 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.86 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.85 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.84 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.83 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.83 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.83 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.81 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.8 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.79 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.76 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.75 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.67 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.63 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.61 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.58 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.55 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.55 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.54 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.54 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.53 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.52 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.52 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.5 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.46 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.43 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.42 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.4 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.39 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.38 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.34 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.33 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.31 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.3 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.28 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.28 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.24 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.24 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.23 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.15 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.14 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.14 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.14 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.09 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.06 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.03 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.03 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.99 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.99 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.96 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.95 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.94 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.94 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.9 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.9 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.89 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.88 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.87 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.87 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.85 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.84 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.81 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.81 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.74 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.73 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.71 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.69 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.67 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.65 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.64 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.6 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.6 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.54 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.53 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.52 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.51 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.5 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.49 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.49 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.49 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 93.48 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.41 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.38 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.38 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.35 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.34 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.3 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.3 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.29 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.29 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.25 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.24 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.23 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.23 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.22 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.2 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.19 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.19 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.18 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.15 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.14 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.13 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.13 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.13 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.12 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.11 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.11 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.07 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.0 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.98 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.95 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.92 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.91 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.9 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.87 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.86 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.86 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.84 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.84 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.83 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.82 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.81 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.75 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.74 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 92.74 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.73 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.73 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.71 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.69 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.66 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.6 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.57 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.55 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.53 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.49 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.49 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.45 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.45 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.33 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.32 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.3 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.3 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.29 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.25 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.24 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.14 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.11 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.1 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.05 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.05 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.01 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.91 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.88 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.85 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.83 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.83 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.82 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.8 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.8 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 91.79 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.75 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.71 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.67 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.63 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.63 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.59 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.58 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.57 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.56 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.53 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 91.41 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.41 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.4 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.38 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.32 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.22 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.2 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.16 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.12 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.11 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.07 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.07 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.04 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.95 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.91 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.89 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.88 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.88 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.75 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.72 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.71 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.71 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.7 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.67 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.63 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.59 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.56 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.54 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.52 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.49 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.37 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.27 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.14 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.08 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.06 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.94 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.76 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.72 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.69 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.62 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.5 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.42 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.23 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.06 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.91 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.89 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.57 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.49 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.32 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.14 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.98 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.88 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.85 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.69 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.54 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.28 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.16 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.78 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.7 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.69 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.58 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.17 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.92 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.64 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 85.62 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.56 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.28 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.1 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.73 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.63 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.27 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.97 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.67 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.05 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.93 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.79 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 82.78 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.87 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=329.97 Aligned_cols=215 Identities=23% Similarity=0.350 Sum_probs=191.4
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++.+|++.++. ++.+|++||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 83-33444499963689889999999999998760599999988999999999999299743334346898887798898
Q 000808 757 KQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 757 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 835 (1275)
.. ...+|.+|||+|++.+++.+||+|++.|.+.++ ..++++.+++++++++.++|.+.+|..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECC
Q ss_conf 9999999995199687994999999999999999999998638-979999964889889985205240005957999879
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 836 kr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~ 914 (1275)
||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|+|+++|++. +..+..|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred CC
Q ss_conf 98
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
++
T Consensus 221 ~~ 222 (239)
T d1v43a3 221 PT 222 (239)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=325.48 Aligned_cols=214 Identities=25% Similarity=0.340 Sum_probs=190.1
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++.+|++.++. ++.+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CC-------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 83-------33444499963689889999999999998760599999988999999999999299743334346898887
Q 000808 757 KQ-------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1275)
Q Consensus 757 ~~-------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 829 (1275)
.. ...++.+|||+|++.++|.+||+|++.|...++ ..+.++.+++++++++.++|.+.++..+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCE
Q ss_conf 7988989999999995199687994999999999999999999998638-979999964889889985205240005957
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 830 lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~ 908 (1275)
||||||||++||++|+.+|++|++||||+|||+.+...+++.++++.++ |.|||+++|++. ++....|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEEECCC
Q ss_conf 9998799
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=331.16 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=188.2
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999981460233204654532211213899947739999969999689999989789999618999999391078
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|+++++. .+.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3-334444999636898899999999999987605999999889999999999992997433343468988877988989
Q 000808 758 Q-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 758 ~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 836 (1275)
. ...+|.+|||+|++.+++.+||+|++.|...++. .+.++.+++++++++.++|.+..|..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHH
T ss_conf 886444322234334202643337889789998759---9889999999999975788656648965-----69999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCC
Q ss_conf 99999999519968799499999999999999999999863-89799999648898899852052400059579998799
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~ 915 (1275)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|+|+++|++. +.....|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
Q ss_pred C
Q ss_conf 8
Q 000808 916 G 916 (1275)
Q Consensus 916 ~ 916 (1275)
.
T Consensus 216 ~ 216 (232)
T d2awna2 216 L 216 (232)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=327.53 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=190.5
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++.+|++++++ .++..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEEC-----------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 899975799988-----------999899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 83------334444999636898899999999999987605999999889999999999992997433343468988877
Q 000808 757 KQ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1275)
Q Consensus 757 ~~------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 830 (1275)
.. ...++.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.+||.+..|..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEE
Q ss_conf 988989999999995199687994999999999999999999998638-9799999648898899852052400059579
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 831 SgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~ 909 (1275)
|||||||++|||+|+.+|++|++||||+|||+.++..+++.++++.++ |.|+|+++|++. ++.+..|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 998799
Q 000808 910 IYVGPL 915 (1275)
Q Consensus 910 ~~~g~~ 915 (1275)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=325.88 Aligned_cols=219 Identities=22% Similarity=0.294 Sum_probs=189.2
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999981460233204654532211213899947739999969999689999989789999618999999391078
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++|++.++... .....+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3------3344449996368988999999999999876059999998899999999999929974333434689888779
Q 000808 758 Q------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1275)
Q Consensus 758 ~------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1275)
. ..+++.+|||+|+..+++.+||+|++.|...++ ..+.++.+++++++++.+||.+..+..+. .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCC
T ss_conf 0875551155416643022522279964999999999984---99989999999999997699035548943-----499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEEE
Q ss_conf 88989999999995199687994999999999999999999998638-97999996488988998520524000595799
Q 000808 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 832 gGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~ 910 (1275)
|||||||+||++|+.+|++|++||||+|||+.++..+++.++++.++ |.|||+++|++. ++....|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCCCC
Q ss_conf 9879986
Q 000808 911 YVGPLGR 917 (1275)
Q Consensus 911 ~~g~~~~ 917 (1275)
..|++++
T Consensus 221 ~~G~~~e 227 (240)
T d3dhwc1 221 EQDTVSE 227 (240)
T ss_dssp EEEETTT
T ss_pred EECCHHH
T ss_conf 9879999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=319.85 Aligned_cols=219 Identities=23% Similarity=0.361 Sum_probs=188.3
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999981460233204654532211213899947739999969999689999989789999618999999391078
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++.+|+++++... .....+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 8999079994899---------820898713377884997999988999982165575068877--77662699999857
Q ss_pred CC------C-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 33------3-44449996368988999999999999876059999998899999999999929974-3334346898887
Q 000808 758 QE------T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESG 829 (1275)
Q Consensus 758 ~~------~-~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~ 829 (1275)
.. . .++.+|||+|+..++|.+||+|++.+....+.....+.++..+++.++++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCE
Q ss_conf 7988989999999995199687994999999999999999999998638-979999964889889985205240005957
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 830 lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~ 908 (1275)
|||||||||+||+||+.+|++|++||||+|||+.++..+++.++++.++ |.|+|+++|++ +....+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEEC-CE
T ss_conf 8999999999875652278889946876546989999999999999984399999987888--99986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9998799
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
++..|+.
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=318.50 Aligned_cols=215 Identities=23% Similarity=0.316 Sum_probs=190.6
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.+..+|++.++ +++.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 78999589999-------------99999806256884897999999999999999999966988--7888799986724
Q ss_pred CC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 83--3344449996368988999999999999876059999998899999999999929974333434689888779889
Q 000808 757 KQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1275)
Q Consensus 757 ~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 834 (1275)
.. ...++.++||||++.+++.+|+.|++.|.+.++. .+..+.++.++.+++.+++.+..+..++ .+||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHH
T ss_conf 46839887218675001546878667788898998617---9989999999999986797888850453-----379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECC
Q ss_conf 89999999995199687994999999999999999999998638979999964889889985205240005957999879
Q 000808 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 835 rkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~ 914 (1275)
|||++||++|+++|++++|||||+|||+.++..+++.+++++++|+|||+++|++. ++....|++++|.+ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999999986599988733798897989999999999999965998999959899-99996999999989-99999928
Q ss_pred CC
Q ss_conf 98
Q 000808 915 LG 916 (1275)
Q Consensus 915 ~~ 916 (1275)
++
T Consensus 217 ~~ 218 (238)
T d1vpla_ 217 VE 218 (238)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=319.86 Aligned_cols=210 Identities=21% Similarity=0.273 Sum_probs=183.5
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999981460233204654532211213899947739999969999689999989789999618999999391078
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++.+|+++++. ..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~--------------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK--------------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS--------------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC--------------CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949--------------978843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3-334444999636898899999999999987605999999889999999999992997433343468988877988989
Q 000808 758 Q-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 758 ~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 836 (1275)
. ...++.+|||+|+..++|.+||+||+.|...++... . +++++++++.+++.+..|..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---9999999998256555758955-----47999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCC
Q ss_conf 99999999519968799499999999999999999999863-89799999648898899852052400059579998799
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~ 915 (1275)
|++||++|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|++. +..+..|++++|.+ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
Q ss_pred C
Q ss_conf 8
Q 000808 916 G 916 (1275)
Q Consensus 916 ~ 916 (1275)
+
T Consensus 213 ~ 213 (229)
T d3d31a2 213 E 213 (229)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=314.00 Aligned_cols=219 Identities=25% Similarity=0.264 Sum_probs=187.4
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++.+|++.++. .+++|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCC----CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 833----344449996368988999999999999876059----------999998899999999999929974333434
Q 000808 757 KQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL----------PPEVDSETQKMFIEEIMELVELNPLRQSLV 822 (1275)
Q Consensus 757 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~----------~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 822 (1275)
... ..++-++|++|+..+++.+||+||+.++...+. ......++..++++++++.+++.+.+|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHE
Q ss_conf 68988877988989999999995199687994999999999999999999998638979999964889889985205240
Q 000808 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFL 902 (1275)
Q Consensus 823 g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~ 902 (1275)
+ .||||||||++||++|+.+|++|+|||||+|||+.++..+++.++++.++|+||++++|+.. ++.+..|++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCCC
Q ss_conf 005957999879986
Q 000808 903 MKRGGQEIYVGPLGR 917 (1275)
Q Consensus 903 l~~~g~~~~~g~~~~ 917 (1275)
|.+ |+++..|++++
T Consensus 223 m~~-G~iv~~g~~~e 236 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGEE 236 (254)
T ss_dssp EET-TEEEEEEESHH
T ss_pred EEC-CEEEEEECHHH
T ss_conf 969-98999966899
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=309.21 Aligned_cols=216 Identities=21% Similarity=0.257 Sum_probs=185.2
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++.+|++.++. ...+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEE
T ss_conf 699997899989-------------9998815066886997999998999829999999974766--7899779999993
Q ss_pred CCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 833----------------3444499963689889999999999998760599999988999999999999299743-33
Q 000808 757 KQE----------------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQ 819 (1275)
Q Consensus 757 ~~~----------------~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~ 819 (1275)
... ..++.+|||+|+..+++.+||.|++.+...... ..+..+.++++.++++.++|.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 3677520000235176799974544899833231411010213656578762--99989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 43468988877988989999999995199687994999999999999999999998638979999964889889985205
Q 000808 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1275)
Q Consensus 820 ~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~ 899 (1275)
... ..|||||+|||+||++|+.+|++|++||||+|||+.+...+++.++++.++|.|||+++|++. ++....|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred HHEEECCCEEEEECCCC
Q ss_conf 24000595799987998
Q 000808 900 LFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 900 ~~~l~~~g~~~~~g~~~ 916 (1275)
+++|.+ |+++..|+++
T Consensus 219 i~vm~~-G~iv~~g~~~ 234 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDPE 234 (258)
T ss_dssp EEEEET-TEEEEEECHH
T ss_pred EEEEEC-CEEEEECCHH
T ss_conf 999979-9999984999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=312.00 Aligned_cols=216 Identities=23% Similarity=0.324 Sum_probs=183.4
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999814602332046545322112138999477399999699996899999897899996189999993910
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
.-++.+|++.++. .+.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 0799961899989-------------9888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---C-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7833---3-4444999636898899999999999987605999999889999999999992-997433343468988877
Q 000808 756 KKQE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPLRQSLVGLPGESGL 830 (1275)
Q Consensus 756 ~~~~---~-~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~l 830 (1275)
.... . .+.-++|++|+..+++.+||+|++.+.+..+.+ .+..++.++++++.+ ++.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 446608888874235567655457763699999988873278----889999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEE
Q ss_conf 98898999999999519968799499999999999999999999863897999996488988998520524000595799
Q 000808 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEI 910 (1275)
Q Consensus 831 SgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~ 910 (1275)
||||||||+||++|+.+|++|+|||||+|||+.+...+++.+++++++|+|||+++|+.. ++.+..|++++|.+ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999999989-9999
Q ss_pred EECCCCC
Q ss_conf 9879986
Q 000808 911 YVGPLGR 917 (1275)
Q Consensus 911 ~~g~~~~ 917 (1275)
+.|++++
T Consensus 219 ~~g~~~e 225 (240)
T d1ji0a_ 219 LEGKASE 225 (240)
T ss_dssp EEEEHHH
T ss_pred EECCHHH
T ss_conf 9848999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=313.49 Aligned_cols=192 Identities=24% Similarity=0.338 Sum_probs=166.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989838999997898979829999998323799989926898665-4137876654466788998999999976238887
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~-~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~~~ 79 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.+... ++.+|||+|++.+++.+||+||+.|+..+++..
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 103 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 103 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC-
T ss_conf 99999899982999999996587888---88899999977888644432223433420264333788978999875998-
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63032685699886089999864688888531100033569999998199544554337875533562433223698777
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1275)
+++.+..++.+++.++|++..|..+. .||||||||++||||+
T Consensus 104 ---------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL 145 (232)
T d2awna2 104 ---------------------------------KEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ----------------------------------CHHHHHHHHHHHHC--------------------------CHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHH
T ss_conf ---------------------------------89999999999975788656648965-----6999999999999997
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 3497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 160 ~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
+.+|++++|||||+|||+.++.+|++.+++..+..+ ++++.++|...++..++|+|++|.+|++++.|+++++.+
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 039988997588878898899899999999987429-879999489999999699999997999999808999973
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=313.57 Aligned_cols=212 Identities=25% Similarity=0.419 Sum_probs=172.5
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++|+||+|+|+. +.+.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 83---33444499963689889999999999998760599999988999999999999299-------743334346898
Q 000808 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-------NPLRQSLVGLPG 826 (1275)
Q Consensus 757 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~~~ 826 (1275)
.. ..+++.++||+|++.++ ..|++||+.+.. ...+.++ +++..+..++ ..-.++.+|..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCC-
T ss_conf 4002465535288982446557-840003522357-----5543888----9999999755788876320134432787-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECC
Q ss_conf 88779889899999999951996879949999999999999999999986389799999648898899852052400059
Q 000808 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 827 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~ 906 (1275)
...||||||||++|||+|+++|+|++||||||+||+.++..+++.++++.+ ++|+|+++|+++ ....+|++++|.+
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 886698898987544344416513556477655598999999999999858-998999978899--9984999999989-
Q ss_pred CEEEEECCCC
Q ss_conf 5799987998
Q 000808 907 GQEIYVGPLG 916 (1275)
Q Consensus 907 g~~~~~g~~~ 916 (1275)
|+++..|+.+
T Consensus 213 G~Iv~~G~~~ 222 (241)
T d2pmka1 213 GKIVEQGKHK 222 (241)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
T ss_conf 9999988999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=310.94 Aligned_cols=192 Identities=25% Similarity=0.337 Sum_probs=165.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989838999997898979829999998323799989926898665-4137876654466788998999999976238887
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~-~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~~~ 79 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++..... ++.+|||+|++.+++++||+||+.|.+++++..
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~- 109 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP- 109 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC-
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCC-
T ss_conf 99999999982999999997589998---78799916413547700015899800335342220999999999873999-
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63032685699886089999864688888531100033569999998199544554337875533562433223698777
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1275)
+ ++.+..++.+++.++|++..|..+ ..||||||||++||||+
T Consensus 110 ---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 110 ---------K------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAI 151 (239)
T ss_dssp ---------H------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHH
T ss_pred ---------H------------------------HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHH
T ss_conf ---------9------------------------999999999998759855660995-----46999998899997664
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 3497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 160 ~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
+.+|+|++|||||+|||+.++.++++.+++..+..+.| ++.++|...++..++|+|++|.+|++++.|+++++.+
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~t-ii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 04998243068866689899989999999998731980-7999489999998699999998999999859999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=307.46 Aligned_cols=192 Identities=26% Similarity=0.341 Sum_probs=164.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98983899999789897982999999832379998992689866-------54137876654466788998999999976
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-------PQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~-------~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~ 73 (1275)
+++|+||||||||||+++|+|...|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|...
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~ 107 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99999999980999999996487889---898999999803566444245322551200221222310116676330687
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 23888763032685699886089999864688888531100033569999998199544554337875533562433223
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1275)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRl 153 (1275)
+++.. + ++.+..++++++.++|++..+..+ ..||||||||+
T Consensus 108 ~~~~~----------~------------------------~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv 148 (240)
T d1g2912 108 LRKVP----------R------------------------QEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRV 148 (240)
T ss_dssp HTTCC----------H------------------------HHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHH
T ss_pred HCCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHH
T ss_conf 72999----------8------------------------999999999998759966762993-----34999999999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHH
Q ss_conf 69877734970878727985604699999999999996832998999953899158941024888649808876482149
Q 000808 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1275)
Q Consensus 154 sIA~al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l 233 (1275)
+||||++.+|+|++|||||+|||+.++.+|++.+++..+..+ ++++.++|..+++..++|+|++|.+|++++.|+++++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 999998269988982588765698999899999999986369-8899995999999996999999989999998599999
Q ss_pred HH
Q ss_conf 99
Q 000808 234 LD 235 (1275)
Q Consensus 234 ~~ 235 (1275)
..
T Consensus 228 ~~ 229 (240)
T d1g2912 228 YD 229 (240)
T ss_dssp HH
T ss_pred HH
T ss_conf 82
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=308.81 Aligned_cols=219 Identities=22% Similarity=0.317 Sum_probs=175.1
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999814602332046545322112138999477399999699996899999897899996189999993910
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++||+|+|+.. .++.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.+||.+
T Consensus 10 g~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEE
T ss_conf 369999989988999----------99976744389984998999999999849999999861437--876899889985
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 783---334444999636898899999999999987605999999889999-----999999992997433343468988
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKM-----FIEEIMELVELNPLRQSLVGLPGE 827 (1275)
Q Consensus 756 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1275)
... ..+++.++||+|++.+++ .|++|++.+.... ........+ ...+.++ .+.+-.++.++. ..
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~ 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AG 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SC
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHC-CC
T ss_conf 311013788877654045650027-6346554542101----302788999999998999998--561211136751-67
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECC
Q ss_conf 877988989999999995199687994999999999999999999998638-9799999648898899852052400059
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRG 906 (1275)
Q Consensus 828 ~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~fd~~~~l~~~ 906 (1275)
..||||||||++|||+|+.+|+|++||||||+||+.+...+++.++++.++ ++|+|+++|++ +..+.+|++++|.+
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~- 226 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEG- 226 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEET-
T ss_pred CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEEC-
T ss_conf 668954704899860445687078716757656853689999999997650698999995979--99985999999989-
Q ss_pred CEEEEECCCCC
Q ss_conf 57999879986
Q 000808 907 GQEIYVGPLGR 917 (1275)
Q Consensus 907 g~~~~~g~~~~ 917 (1275)
|+++..|++++
T Consensus 227 G~iv~~Gt~~e 237 (251)
T d1jj7a_ 227 GAIREGGTHQQ 237 (251)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEECCHHH
T ss_conf 99999889999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=309.46 Aligned_cols=193 Identities=23% Similarity=0.370 Sum_probs=172.2
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 138999477399999699996899999897899996189999993910783-3344449996368988999999999999
Q 000808 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFTRISGYCEQNDIHSPFVTVYESLLY 786 (1275)
Q Consensus 708 ~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f 786 (1275)
|+|+.+. +|.++|+||||||||||+++|+|..+ +.+|+|.+||.+... ...++.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 87605999999889999999999992997433343468988877988989999999995199687994999999999999
Q 000808 787 SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866 (1275)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~ 866 (1275)
+. + .....+++++++++++.+||.+..+..+. .|||||||||+||+||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCC
Q ss_conf 999999998638-9799999648898899852052400059579998799
Q 000808 867 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 867 ~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~ 915 (1275)
.+++.++++.++ |.|||+++|++. ++....|++++|.+ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=306.20 Aligned_cols=189 Identities=23% Similarity=0.314 Sum_probs=163.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989838999997898979829999998323799989926898665-4137876654466788998999999976238887
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~-~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~~~ 79 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.+... ++.+|||+|++.+++++||+||+.|+.++++...
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~ 104 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf 99999899982999999996476888---788999567346521657405615121111746657788888776405538
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63032685699886089999864688888531100033569999998199544554337875533562433223698777
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1275)
...++.+++.++|.+..|..+ ..|||||||||+||||+
T Consensus 105 -------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL 142 (229)
T d3d31a2 105 -------------------------------------PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARAL 142 (229)
T ss_dssp -------------------------------------HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHT
T ss_pred -------------------------------------HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHCCHHHHHHH
T ss_conf -------------------------------------999999999825655575895-----54799984014030434
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 3497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 160 ~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
+.+|++++|||||||||+.++.++++.+++..+.. +.+++.++|...++..++|+|++|.+|+++++|+++++.+
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 43677144347876799899999999999998647-9689997499999999699999997999999869999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=309.02 Aligned_cols=212 Identities=26% Similarity=0.417 Sum_probs=171.8
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999981460233204654532211213899947739999969999689999989789999618999999391078
Q 000808 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1275)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1275)
++++||+|+|+ +.+.+|+|||+.++|||++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 79998899879------------99841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCC
Q ss_conf 3---334444999636898899999999999987605999999889999999999992997-------433343468988
Q 000808 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-------PLRQSLVGLPGE 827 (1275)
Q Consensus 758 ~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g~~~~ 827 (1275)
. ..+++.++||+|++.+++. |++|++.+... ...+.+. +++.++..++. +..++.+|.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCC-C
T ss_conf 24678887436797566545785-34543012445----5542356----7789999975554203742101523687-8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCC
Q ss_conf 87798898999999999519968799499999999999999999999863897999996488988998520524000595
Q 000808 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 907 (1275)
Q Consensus 828 ~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g 907 (1275)
..||||||||++|||||+.+|+|++|||||++||+.++..+++.++++. +++|+|+++|++ +....+|++++|.+ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l--~~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL--STIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH--HHHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCH--HHHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-799899997879--99984999999989-9
Q ss_pred EEEEECCCCC
Q ss_conf 7999879986
Q 000808 908 QEIYVGPLGR 917 (1275)
Q Consensus 908 ~~~~~g~~~~ 917 (1275)
+++..|++++
T Consensus 214 ~iv~~G~~~e 223 (242)
T d1mv5a_ 214 QITGSGKHNE 223 (242)
T ss_dssp EECCCSCHHH
T ss_pred EEEEECCHHH
T ss_conf 9999999999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=303.85 Aligned_cols=190 Identities=23% Similarity=0.359 Sum_probs=161.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989838999997898979829999998323799989926898665-4137876654466788998999999976238887
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~-~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~~~ 79 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.+++++||+||+.|+.+ ..
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~--~~-- 98 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR--NV-- 98 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT--TS--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHHC--CC--
T ss_conf 99999799980999999997399989---628999999988699899285225231443522015576665323--36--
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63032685699886089999864688888531100033569999998199544554337875533562433223698777
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1275)
+ +. +.+..++++++.+||.+..+..+ ..|||||||||+||||+
T Consensus 99 --~------~~------------------------~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral 141 (240)
T d2onka1 99 --E------RV------------------------ERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARAL 141 (240)
T ss_dssp --C------HH------------------------HHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHH
T ss_pred --C------HH------------------------HHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHH
T ss_conf --7------78------------------------89999999998638375665794-----44899998999998777
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 3497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 160 ~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
+.+|++++|||||||||+.++..+++.+++..+..+.+ ++.++|...++..++|+|++|++|+++++|+++++.+
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~t-vi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 51677067528655588799999999999998743976-9998189999999699999998999999906999832
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=305.34 Aligned_cols=215 Identities=25% Similarity=0.381 Sum_probs=176.2
Q ss_pred CCEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 70899996999981460233204654532211213899947739999969999689999989789999618999999391
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
...++++|++|+|+. ..+.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCE
T ss_conf 887999988999599-----------99760644389983998999988999809999999971278--63000153998
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 0783---3344449996368988999999999999876059999998899999999999929974-------33343468
Q 000808 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGL 824 (1275)
Q Consensus 755 ~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~ 824 (1275)
+... ..+++.++||+|++.+++ .|++||+.|.. + ..+.+ .+.++++..++.+ -.++.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 7530788886341456510156899-87999985158----6-79999----9999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEE
Q ss_conf 98887798898999999999519968799499999999999999999999863897999996488988998520524000
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~ 904 (1275)
. ...||||||||++|||+|+.+|+|++||||||+||+.++..+++.++.+.+ ++|+|+++|+++ ....+|++++|.
T Consensus 151 ~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE
T ss_conf 8-898499999999999998559989998376544797799999999998753-888999968999--998599999998
Q ss_pred CCCEEEEECCCCC
Q ss_conf 5957999879986
Q 000808 905 RGGQEIYVGPLGR 917 (1275)
Q Consensus 905 ~~g~~~~~g~~~~ 917 (1275)
+ |+++..|+.++
T Consensus 227 ~-G~iv~~G~~~e 238 (255)
T d2hyda1 227 N-GHIVETGTHRE 238 (255)
T ss_dssp T-TEEEEEECHHH
T ss_pred C-CEEEEECCHHH
T ss_conf 9-99999889999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-45 Score=298.82 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=173.6
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999814602332046545322112138999477399999699996899999897899996189999993910
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++||+|+|+. ..+.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 07999988999299-----------99763533289985999999999999859999999862168--884689878801
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCC
Q ss_conf 783---33444499963689889999999999998760599999988999999999999299743-------33434689
Q 000808 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1275)
Q Consensus 756 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1275)
... ..+++.++||+|++.++ ..|+++++.+.. +...+.++ ++++++..++.+. .++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHHH----HHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 21110665420687995025447-862024332057----22089999----9999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEEC
Q ss_conf 88877988989999999995199687994999999999999999999998638979999964889889985205240005
Q 000808 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 826 ~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~ 905 (1275)
...||||||||++|||+|+.+|+|++||||||+||+.++..|++.|+++.+ ++|+|+++|+++ ....+|+|++|.+
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCEEEEEEC
T ss_conf -898499999999999999549988995164445898899999999987522-788999988799--9985999999989
Q ss_pred CCEEEEECCCC
Q ss_conf 95799987998
Q 000808 906 GGQEIYVGPLG 916 (1275)
Q Consensus 906 ~g~~~~~g~~~ 916 (1275)
|+++..|++.
T Consensus 226 -G~Iv~~G~~~ 235 (253)
T d3b60a1 226 -GIIVERGTHS 235 (253)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
T ss_conf -9999988999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=305.24 Aligned_cols=192 Identities=20% Similarity=0.247 Sum_probs=162.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 9898389999978989798299999983237999899268986------6541378766544667889989999999762
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF------VPQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~------~~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l 74 (1275)
+.+|+||||||||||+++|+|..+|+ +|+|.++|+++... ..++.+|||+|+..+++++||+||+.|+.+.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~ 109 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999899980999999997586888---745999999951373111531204514773043346666577776655676
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 38887630326856998860899998646888885311000335699999981995445543378755335624332236
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRls 154 (1275)
.+.. ..+.+..++++++.++|.+..|...+ .||||||||++
T Consensus 110 ~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRva 150 (242)
T d1oxxk2 110 MKMS----------------------------------KEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVA 150 (242)
T ss_dssp SSCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHH
T ss_pred HCCC----------------------------------HHHHHHHHHHHHHHCCHHHHHHCCHH-----HCCHHHHHHHH
T ss_conf 1379----------------------------------99999999999866591766648954-----59999985899
Q ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 98777349708787279856046999999999999968329989999538991589410248886498088764821499
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 IA~al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~ 234 (1275)
||||++.+|+++++||||+|||+.++.++++.+++..+..+.| ++.++|...++..++|+|++|.+|++++.|+++++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~t-vi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989999998635987-999979999999969999999899999986999998
Q ss_pred H
Q ss_conf 9
Q 000808 235 D 235 (1275)
Q Consensus 235 ~ 235 (1275)
+
T Consensus 230 ~ 230 (242)
T d1oxxk2 230 D 230 (242)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=302.18 Aligned_cols=191 Identities=21% Similarity=0.287 Sum_probs=163.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 989838999997898979829999998323799989926898665------41378766544667889989999999762
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP------QRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~------~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l 74 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++..... |+.+|||+|+..+++.+||+||+.|..++
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~ 109 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998999898889999875886366---773288676852087555115541664302252227996499999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 38887630326856998860899998646888885311000335699999981995445543378755335624332236
Q 000808 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1275)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRls 154 (1275)
.+... ++++..++++++.+||++..+... ..||||||||++
T Consensus 110 ~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~~QRva 150 (240)
T d3dhwc1 110 DNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVA 150 (240)
T ss_dssp TTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHHHHHHH
T ss_pred CCCCH----------------------------------HHHHHHHHHHHHHCCCCHHHHCCH-----HHCCHHHHHHHH
T ss_conf 49998----------------------------------999999999999769903554894-----349999998999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 98777349708787279856046999999999999968329989999538991589410248886498088764821499
Q 000808 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1275)
Q Consensus 155 IA~al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~ 234 (1275)
||||++.+|+++++||||+|||+.++.+|++.+++..+..+ .+++.++|...++..++|+|++|.+|++++.|+++++.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC-CEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 86401058986874465565898885679999999986469-78999838999999869999999799999987999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-44 Score=293.58 Aligned_cols=193 Identities=24% Similarity=0.370 Sum_probs=151.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999998323799989926898665---41378766544667889989999999762388
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~---~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~ 77 (1275)
.++|+||||||||||+++|+|.++|+ +|+|.++|+++..... |+.++||+|++.+| +.||+|||.++.+-
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~--- 103 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANPG--- 103 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTSTT---
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCCCC---
T ss_conf 99999999998999999997357888---889999999944002465535288982446557-84000352235755---
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630326856998860899998646888885311000335699999981995445543378755335624332236987
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1275)
.+.+...+++.... ..+ ....++.+.+|.+|+.+ ..|||||||||+|||
T Consensus 104 ----------------------~~~~~~~~~~~~~~-----~~~---~i~~~~~~~~t~i~~~g-~~LSGGq~QRvalAR 152 (241)
T d2pmka1 104 ----------------------MSVEKVIYAAKLAG-----AHD---FISELREGYNTIVGEQG-AGLSGGQRQRIAIAR 152 (241)
T ss_dssp ----------------------CCHHHHHHHHHHHT-----CHH---HHTTSTTGGGSBCSTTT-TCCCHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHH-----HHH---HHHHHHCCHHHHCCCCC-CCCCHHHHHHHHHHH
T ss_conf ----------------------43888999999975-----578---88763201344327878-866988989875443
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 773497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
|++.+|+|++||||||+||+.++.+|++.+++.. .+.|+++ ++|.. +....+|+|++|++|+++++|+++++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l-~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 153 ALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVII-IAHRL-STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEE-ECSSG-GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH--CCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4441651355647765559899999999999985--8998999-97889-9998499999998999999889999982
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-44 Score=294.60 Aligned_cols=196 Identities=20% Similarity=0.327 Sum_probs=153.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999998323799989926898665---41378766544667889989999999762388
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~---~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~ 77 (1275)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... |+.++||+|++.+| +.||+||+.++...+.
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~~~~- 116 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQKP- 116 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCCC-
T ss_conf 99999999984999999986143787---689988998531101378887765404565002-7634655454210130-
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630326856998860899998646888885311000335699999981995445543378755335624332236987
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1275)
+.....+++... ...-...+|+++.+|.+++. +..||||||||++|||
T Consensus 117 -----------------------~~~~~~~~~~~~--------~~~~~i~~l~~g~~~~i~~~-~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 117 -----------------------TMEEITAAAVKS--------GAHSFISGLPQGYDTEVDEA-GSQLSGGQRQAVALAR 164 (251)
T ss_dssp -----------------------CHHHHHHHHHHH--------TCHHHHHTSTTGGGCBCCSS-CSSSCHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHH--------HHHHHHHHCCCCCHHHHHCC-CCCCCHHHCEEEEEEE
T ss_conf -----------------------278899999999--------89999985612111367516-7668954704899860
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 773497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
|++.+|+|++||||||+||+.++.+|++.+++..+..+.|+++ ++|.. +....+|+|++|++|+++++|+++++.+
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l-~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL-ITQHL-SLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCH-HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4456870787167576568536899999999976506989999-95979-9998599999998999999889999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-44 Score=292.03 Aligned_cols=189 Identities=20% Similarity=0.223 Sum_probs=153.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-------CCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 989838999997898979829999998323799989926898665-------4137876654466788998999999976
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~-------~~~i~yv~Q~d~~~~~lTVrEnL~f~a~ 73 (1275)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++..... ++.+|||+|++.+++.+||+||+.++..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 109 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHH
T ss_conf 99998899998216557506887777---662699999857688555123125557788041241768668887757888
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCH
Q ss_conf 23888763032685699886089999864688888531100033569999998199544-55433787553356243322
Q 000808 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVC-DDTLVGDEMVRGISGGQKKR 152 (1275)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~-~~T~VG~~~~~~LSGGQKrR 152 (1275)
.+..+.. + . ++....+...++.++|++. .+.. ...||||||||
T Consensus 110 ~~~~~~~-~------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~-----p~~LSGGqkQR 153 (230)
T d1l2ta_ 110 FKYRGAM-S------G------------------------EERRKRALECLKMAELEERFANHK-----PNQLSGGQQQR 153 (230)
T ss_dssp TCCSSCC-C------H------------------------HHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHHH
T ss_pred HHCCCCC-C------H------------------------HHHHHHHHHHHHHHCHHHHHHCCC-----HHHCCHHHHHH
T ss_conf 7224789-9------9------------------------999999999887624234553488-----02389999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCH
Q ss_conf 369877734970878727985604699999999999996832998999953899158941024888649808876482
Q 000808 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 153 lsIA~al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~ 230 (1275)
++||||++.+|++++|||||||||+.++.+|++.+++..+..+.|+++ ++|...++ ..+|+|++|.+|++++.|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV-VTHDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE-ECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCHHHH-HHCCEEEEEECCEEEEECCC
T ss_conf 998756522788899468765469899999999999999843999999-87888999-86998999989999995257
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.7e-44 Score=293.43 Aligned_cols=193 Identities=22% Similarity=0.369 Sum_probs=152.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983899999789897982999999832379998992689866---541378766544667889989999999762388
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~---~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~ 77 (1275)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+.. .|+.++||+|++.+| +.||+|||.|+...
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~--- 118 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPT--- 118 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSS---
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCCCC---
T ss_conf 99998899980999999997127863---000153998753078888634145651015689-98799998515867---
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630326856998860899998646888885311000335699999981995445543378755335624332236987
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1275)
.+.++..+++...+ +.+. ...|+++.+|.+|+.+ .+||||||||++|||
T Consensus 119 ----------------------~~~~~~~~al~~~~-----l~~~---i~~lp~gl~t~i~~~g-~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 119 ----------------------ATDEEVVEAAKMAN-----AHDF---IMNLPQGYDTEVGERG-VKLSGGQKQRLSIAR 167 (255)
T ss_dssp ----------------------CCHHHHHHHHHHTT-----CHHH---HHTSTTGGGCBCCGGG-TTSCHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHC-----CHHH---HHHCCCCCCCHHCCCC-CCCCHHHHHHHHHHH
T ss_conf ----------------------99999999999969-----7999---9736242010333888-984999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 773497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
|++.+|+|++||||||+||+.++..|++.+++.. .++|+|+ ++|.. +....+|+|++|++|++++.|+++++.+
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~-itH~~-~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHRL-STITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSSG-GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9855998999837654479779999999999875--3888999-96899-9998599999998999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.4e-44 Score=291.55 Aligned_cols=193 Identities=22% Similarity=0.245 Sum_probs=164.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 98983899999789897982999999832379998992689866--5413787665446678899899999997623888
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~--~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~~ 78 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|++..+.. .++.++||||++.+++++|++||+.|.+.+.+..
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~ 106 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 106 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999999999996698878---887999867244683988721867500154687866778889899861799
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 76303268569988608999986468888853110003356999999819954455433787553356243322369877
Q 000808 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1275)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~a 158 (1275)
+ .+....++..++.++|.+..+..++ .||||||||++||+|
T Consensus 107 ----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 107 ----------S------------------------SEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARA 147 (238)
T ss_dssp ----------H------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHH
T ss_pred ----------H------------------------HHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_conf ----------8------------------------9999999999986797888850453-----379989899999999
Q ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHHHH
Q ss_conf 7349708787279856046999999999999968329989999538991589410248886498088764821499999
Q 000808 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1275)
Q Consensus 159 l~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~~f 237 (1275)
++++|+|++|||||+|||+.++.++++.+++.+. . +++++.++|..+++..++|+|++|.+|++++.|+++++.+.+
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~-g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 8659998873379889798999999999999996-5-998999959899999969999999899999992899998652
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-43 Score=287.73 Aligned_cols=194 Identities=23% Similarity=0.362 Sum_probs=151.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983899999789897982999999832379998992689866---541378766544667889989999999762388
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~---~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~ 77 (1275)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+.. .++.++||+|++.++ ..|+++|+.++..-
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~~--- 115 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYARTE--- 115 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTTS---
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCCCC---
T ss_conf 99999999985999999986216888---468987880121110665420687995025447-86202433205722---
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630326856998860899998646888885311000335699999981995445543378755335624332236987
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1275)
.. +.+.+.+++.... +.+.+ -.|+++.+|.+|+. +..|||||||||+|||
T Consensus 116 --~~-------------------~~~~i~~a~~~~~-----l~~~i---~~l~~gl~t~~~~~-~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 116 --EY-------------------SREQIEEAARMAY-----AMDFI---NKMDNGLDTIIGEN-GVLLSGGQRQRIAIAR 165 (253)
T ss_dssp --CC-------------------CHHHHHHHHHTTT-----CHHHH---HHSTTGGGSBCCTT-SCSSCHHHHHHHHHHH
T ss_pred --CC-------------------CHHHHHHHHHHHH-----HHHHH---HHCCCCCHHHHCCC-CCCCCHHHHHHHHHHH
T ss_conf --08-------------------9999999999981-----79999---73554410143488-8984999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 773497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
|++.+|+|++||||||+||+.++..|++.+++.. .++|+++ ++|.. +....||+|++|++|+++++|+++++.+
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l-~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCG-GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9954998899516444589889999999998752--2788999-98879-9998599999998999999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.6e-45 Score=296.12 Aligned_cols=194 Identities=21% Similarity=0.286 Sum_probs=151.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983899999789897982999999832379998992689866---541378766544667889989999999762388
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~---~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~ 77 (1275)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++++.. .|+.++||+|++.+|+. ||+||+.++.....
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~- 104 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDY- 104 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCS-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCCCCC-
T ss_conf 99999999997999999999960989---87798899884424678887436797566545785-34543012445554-
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630326856998860899998646888885311000335699999981995445543378755335624332236987
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1275)
. ..+..+..+...+ . -....++++.+|.+|+.+ .+|||||||||+|||
T Consensus 105 ----~-~~~~~~~~~~~~~---------------~-----------~~~~~~~~~~~~~i~~~g-~~LSGGqkQRv~iAR 152 (242)
T d1mv5a_ 105 ----T-DEDLWQVLDLAFA---------------R-----------SFVENMPDQLNTEVGERG-VKISGGQRQRLAIAR 152 (242)
T ss_dssp ----C-HHHHHHHHHHHTC---------------T-----------TTTTSSTTGGGCEESTTS-BCCCHHHHHHHHHHH
T ss_pred ----C-HHHHHHHHHHHHH---------------H-----------HHHCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHH
T ss_conf ----2-3567789999975---------------5-----------542037421015236878-987999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 773497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 158 al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
|++.+|+|++||||||+||+.++..|++.+++.. .+.|+++ ++|... ....+|+|++|++|+++++|+++++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l~-~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLV-IAHRLS-TIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEE-ECCSHH-HHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9852998999658865569889999988788871--7998999-978799-998499999998999999999999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.3e-44 Score=289.81 Aligned_cols=190 Identities=24% Similarity=0.336 Sum_probs=154.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 989838999997898979829999998323799989926898665----4137876654466788998999999976238
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~----~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~ 76 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++..... +..++|++|+..+++.+||+||+.+++....
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~ 110 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999985999999996788888---038984244344660888887423556765545776369999998887327
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 887630326856998860899998646888885311000335699999981-9954455433787553356243322369
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVL-GLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l-~L~~~~~T~VG~~~~~~LSGGQKrRlsI 155 (1275)
... .. +...+.++..+ +|.+..+..++ .|||||||||+|
T Consensus 111 ~~~------~~-----------------------------~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 111 DKE------GI-----------------------------KRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAI 150 (240)
T ss_dssp CSS------HH-----------------------------HHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHH
T ss_pred CHH------HH-----------------------------HHHHHHHHHHHHCHHHHHHCCHH-----HCCHHHHHHHHH
T ss_conf 888------99-----------------------------99999999874176888758543-----389999999999
Q ss_pred HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 87773497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 156 A~al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
|||++.+|++++|||||+|||+.++.++++.+++.+. . +++++.++|...++..++|+|++|.+|++++.|+++++.+
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 9999829987400398867999999999999999996-8-9989999588999999699999998999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-43 Score=288.36 Aligned_cols=204 Identities=25% Similarity=0.344 Sum_probs=163.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9898389999978989798299999983237999899268986654----137876654466788998999999976238
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ----RTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~~----~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~ 76 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++|+..+++++||.||+.+++..++
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCC
T ss_conf 99999999984999999997797688---737999999664056999998338725776424788742321430133303
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 88763032685699886089999864688888531100033569999998199544554337875533562433223698
Q 000808 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1275)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA 156 (1275)
... ....-..... + ..++....++.+++.+++.+..+..++ .|||||||||+||
T Consensus 109 ~~~-------~~~~~~~~~~-~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA 162 (254)
T d1g6ha_ 109 ESP-------LNSLFYKKWI-P-------------KEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIG 162 (254)
T ss_dssp SCH-------HHHHHHCSSC-C-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHH
T ss_pred CCC-------HHHHHHHCCC-C-------------CHHHHHHHHHHHHHHCCCCHHCCCCHH-----HCCCHHHHHHHHH
T ss_conf 450-------4566542135-3-------------289999999999876196302059535-----6991888899999
Q ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 7773497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 157 ~al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
||++.+|++++|||||+|||+.++.++++.+++.+. ++++|+.++|..+++..++|+|++|.+|++++.|+++++.+
T Consensus 163 raL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 999759272324397656999999999999999997--89989999476999998699999996998999966899865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-42 Score=282.22 Aligned_cols=191 Identities=20% Similarity=0.287 Sum_probs=157.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC----------------CCCEEEEECCCCCCCCCCCH
Q ss_conf 98983899999789897982999999832379998992689866----------------54137876654466788998
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----------------PQRTAAYISQHDVHIGEMTV 64 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~----------------~~~~i~yv~Q~d~~~~~lTV 64 (1275)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|++.+++.+||
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv 106 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 106 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHC
T ss_conf 99999899982999999997476678---997799999933677520000235176799974544899833231411010
Q ss_pred HHHHHHHH-HCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCC
Q ss_conf 99999997-623888763032685699886089999864688888531100033569999998199544-5543378755
Q 000808 65 RETLAFSA-RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVC-DDTLVGDEMV 142 (1275)
Q Consensus 65 rEnL~f~a-~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~-~~T~VG~~~~ 142 (1275)
.||+.++. ...+. + + .+....+.+.++.++|.+. .+.. .
T Consensus 107 ~env~~~~~~~~~~----~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----p 147 (258)
T d1b0ua_ 107 LENVMEAPIQVLGL----S------K------------------------HDARERALKYLAKVGIDERAQGKY-----P 147 (258)
T ss_dssp HHHHHHHHHHTTCC----C------H------------------------HHHHHHHHHHHHHTTCCHHHHTSC-----G
T ss_pred CHHHHHHHHHHCCC----C------H------------------------HHHHHHHHHHHHHCCCCHHHHCCC-----C
T ss_conf 21365657876299----9------8------------------------999999999999829952443068-----2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 33562433223698777349708787279856046999999999999968329989999538991589410248886498
Q 000808 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDA 222 (1275)
Q Consensus 143 ~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G 222 (1275)
..|||||||||+||||++.+|++++|||||+|||+.++.+|++.+++..+ . +++++.++|...++..++|||++|.+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~-g~til~vtHdl~~~~~~adri~vm~~G 225 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGFARHVSSHVIFLHQG 225 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCHHHHHHHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-C-CCCEEEEECCHHHHHHHCCEEEEEECC
T ss_conf 20567788898999998439987885245556887888899876554103-6-883389948999999869999999799
Q ss_pred EEEEECCHHHHHH
Q ss_conf 0887648214999
Q 000808 223 QIVYQGPRELVLD 235 (1275)
Q Consensus 223 ~vv~~G~~~~l~~ 235 (1275)
++++.|+++++..
T Consensus 226 ~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 226 KIEEEGDPEQVFG 238 (258)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999849999983
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-42 Score=281.33 Aligned_cols=193 Identities=19% Similarity=0.343 Sum_probs=151.8
Q ss_pred CCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 32211213899947739999969999689999989789999618999999391078333444499963689889999999
Q 000808 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVY 781 (1275)
Q Consensus 702 ~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~ 781 (1275)
.+++|+|+|+.+++||++||+||||||||||+++|+|... +.+|.|.++| .++|++|+..+++ .|++
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECC----------EEEEEECCCCCCC-CEEE
T ss_conf 9767737599985999999998999829999999957974--7882899999----------9999816430267-6032
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999876059999998899999999---999929974333434689888779889899999999951996879949999
Q 000808 782 ESLLYSAWLRLPPEVDSETQKMFIEE---IMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858 (1275)
Q Consensus 782 e~l~f~~~~~~~~~~~~~~~~~~v~~---~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts 858 (1275)
|++.|.. .......+...+. ......+....++.++.. ...||||||||++|||+|+++|+|++|||||+
T Consensus 115 eni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 1420333------4560579999999776999984612332355554-23779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCC
Q ss_conf 99999999999999998638979999964889889985205240005957999879986
Q 000808 859 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 859 gLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~~~ 917 (1275)
+||+.+...+++.+......++|+|+++|++ +....+|++++|.+ |++++.|++++
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~e 243 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFSE 243 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHHH
T ss_conf 4898999999999998862899999992528--99985999999989-99999878999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-42 Score=280.94 Aligned_cols=183 Identities=23% Similarity=0.303 Sum_probs=142.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 98983899999789897982999999832379998992689866541378766544667889989999999762388876
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~~~~ 80 (1275)
+++|+||||||||||+++|+|.++|+ +|.|.++| .++||+|++++++ .||+||+.|+...
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~eni~~~~~~------ 123 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIKENIIFGVSY------ 123 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHHHHHTTTSCC------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEECCCCCCCCC------
T ss_conf 99999899982999999995797478---82899999----------9999816430267-6032142033345------
Q ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 30326856998860899998646888885311000335699999981995445543378755335624332236987773
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al~ 160 (1275)
+. ....... +.+.. ......++++.+|.+|+. +.+|||||||||+||||++
T Consensus 124 -~~-~~~~~~~---------------~~~~~-----------~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~ 174 (281)
T d1r0wa_ 124 -DE-YRYKSVV---------------KACQL-----------QQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVY 174 (281)
T ss_dssp -CH-HHHHHHH---------------HHTTC-----------HHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHH
T ss_pred -CC-HHHHHHH---------------HHHHH-----------HHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHH
T ss_conf -60-5799999---------------99776-----------999984612332355554-2377999999999999998
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 497087872798560469999999999999683299899995389915894102488864980887648214999
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1275)
Q Consensus 161 ~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~ 235 (1275)
.+|+|++||||||+||+.++.++++.+..... .++|+|+ ++|.. +....+|+|++|++|+++++|+++++.+
T Consensus 175 ~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~-itH~~-~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRIL-VTSKM-EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEE-ECSCH-HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECHH-HHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 69635133385544898999999999998862-8999999-92528-9998599999998999999878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-41 Score=273.49 Aligned_cols=196 Identities=21% Similarity=0.341 Sum_probs=166.8
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 2112138999477399999699996899999897899996189999993910783---3344449996368988999999
Q 000808 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 704 ~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv 780 (1275)
..|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... .......+|++|........++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 15558888994898999998999809999999948879---955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEE
Q ss_conf 999999876059999998899999999999929974333434689888779889899999999951-------9968799
Q 000808 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVA-------NPSIIFM 853 (1275)
Q Consensus 781 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~-------~p~il~l 853 (1275)
++.+.+...- ..+.+.++++++.+++.+..+..+. .||||||||++||++|+. +|++++|
T Consensus 90 ~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCCH--------HHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 8876410014--------6689999999986598767676844-----56998899999999998517133899889997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCC
Q ss_conf 4999999999999999999998638979999964889889985205240005957999879986
Q 000808 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGR 917 (1275)
Q Consensus 854 DEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~~~ 917 (1275)
||||+|||+.+...+.+.++++.++|+|||+++|++. ++.+..|++++|.+ |++++.|++.+
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~e 218 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRREE 218 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCHHH
T ss_conf 1877778989999999999999867999999967799-99997999999979-98999889999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2e-39 Score=261.49 Aligned_cols=196 Identities=20% Similarity=0.271 Sum_probs=158.7
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
.++.+|+++.++ +.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 83334444999636898899999999999987605999999889999999999992997433343468988877988989
Q 000808 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1275)
Q Consensus 757 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 836 (1275)
.. .+..++|++|+..++..+|++|++.+.+.++... ... ..+.+.++.+++.+..+ .+ ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~-~~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKK-KL-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTS-BG-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCC-CC-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-379----99999998748856301-26-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEEC
Q ss_conf 999999995199687994999999999999999999998638979999964889889985205240005
Q 000808 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKR 905 (1275)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~ 905 (1275)
|++||++++.+|++++|||||+|||+.++..+++.+++..+++.++|+++|+. ...+|.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-37 Score=250.37 Aligned_cols=184 Identities=23% Similarity=0.296 Sum_probs=149.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9898389999978989798299999983237999899268986654---1378766544667889989999999762388
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~~---~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~ 77 (1275)
+++|+||||||||||+++|+|.. |+ +|+|.++|.++.....+ ...+|++|+.......++.+++.++..-+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 100 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--
T ss_conf 99999899980999999994887-99---5599999999986998999864024512135774420988764100146--
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630326856998860899998646888885311000335699999981995445543378755335624332236987
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1275)
.....++.++..++|.+..+..+. .||||||||++||+
T Consensus 101 -------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~ 138 (231)
T d1l7vc_ 101 -------------------------------------TRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAA 138 (231)
T ss_dssp -------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHH
T ss_conf -------------------------------------689999999986598767676844-----56998899999999
Q ss_pred HHHC-------CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCH
Q ss_conf 7734-------970878727985604699999999999996832998999953899158941024888649808876482
Q 000808 158 MMVG-------PALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1275)
Q Consensus 158 al~~-------~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~ 230 (1275)
+++. +|+|++|||||+|||+.++..+++.+++.+. . +++++.++|...++...+|++++|.+|++++.|++
T Consensus 139 al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 139 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 998517133899889997187777898999999999999986-7-99999996779999997999999979989998899
Q ss_pred HHHH
Q ss_conf 1499
Q 000808 231 ELVL 234 (1275)
Q Consensus 231 ~~l~ 234 (1275)
+++.
T Consensus 217 ~ev~ 220 (231)
T d1l7vc_ 217 EEVL 220 (231)
T ss_dssp HHHS
T ss_pred HHHH
T ss_conf 9981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.3e-34 Score=231.14 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=133.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 98983899999789897982999999832379998992689866541378766544667889989999999762388876
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~~~~ 80 (1275)
+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+. ++.++|++|+..+...+|++|++.+.+.+.+....
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~ 103 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 103 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999971999999996620567---78899998962673--67089995013578882899999999975488637
Q ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 30326856998860899998646888885311000335699999981995445543378755335624332236987773
Q 000808 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1275)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al~ 160 (1275)
.+ .+...++.+++.+. +.. ...||||||||++||++++
T Consensus 104 ---------------------~~---------------~~~~~l~~~~~~~~-~~~-----~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 104 ---------------------KN---------------EIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp ---------------------HH---------------HHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHHHTT
T ss_pred ---------------------HH---------------HHHHHHHHCCCCCC-CCC-----CCCCCCCHHHHHHHHHHHH
T ss_conf ---------------------99---------------99999987488563-012-----6868971888899999886
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 4970878727985604699999999999996832998999953899158941024888649
Q 000808 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 221 (1275)
Q Consensus 161 ~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~ 221 (1275)
.+|++++|||||+|||+.++..+++.+++..+. +++++++.||.. ..+|.+.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.42 E-value=2.2e-15 Score=110.30 Aligned_cols=81 Identities=16% Similarity=0.047 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEECCCE
Q ss_conf 798898999999999519968799499999999999999999999863-8979999964889889985205240005957
Q 000808 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKRGGQ 908 (1275)
Q Consensus 830 lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~ 908 (1275)
+++|++++..+++++..+|+++++|||+...+ .....+..+.+..+ .+.++++++|+.. .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEECCC
Q ss_conf 9998799
Q 000808 909 EIYVGPL 915 (1275)
Q Consensus 909 ~~~~g~~ 915 (1275)
++.-++.
T Consensus 157 i~~v~~~ 163 (178)
T d1ye8a1 157 LIELTPE 163 (178)
T ss_dssp EEECCTT
T ss_pred EEEECCC
T ss_conf 9998996
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.42 E-value=4.1e-14 Score=102.30 Aligned_cols=158 Identities=15% Similarity=0.044 Sum_probs=94.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCC--EEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 8983899999789897982999999832379998992689866541--37876654466788998999999976238887
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQR--TAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~~~--~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~~~ 79 (1275)
.+|+||||||||||++.|+|.+++. .|.+..++.+......+. .+.+...........+..+...+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------G 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE--------T
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_conf 9999899938999999998148888---6469987713288887653112336677788754113455443--------0
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63032685699886089999864688888531100033569999998199544554337875533562433223698777
Q 000808 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1275)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1275)
+ .+. +.....+++|+++|.++++++
T Consensus 72 ~--------------------------------------------------~~~-----~~~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 72 S--------------------------------------------------YGV-----NVQYFEELAIPILERAYREAK 96 (178)
T ss_dssp T--------------------------------------------------EEE-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred H--------------------------------------------------HHC-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 2--------------------------------------------------303-----762566532013789999997
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECC
Q ss_conf 3497087872798560469999999999999683299899995389915894102488864980887648
Q 000808 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1275)
Q Consensus 160 ~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~ 229 (1275)
..+|+++++|||....+. ....++.+.+.....+.++++ ++|.. +...+.|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~-~~h~~-~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVA-TIPIR-DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEE-ECCSS-CCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCCCEEEE-EECCH-HHHHHHCEEEEEECCEEEEECC
T ss_conf 409974230277731004--579999999875057978999-97447-7898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=1.4e-09 Score=73.72 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEE
Q ss_conf 87798898999999999----51996879949999999999999999999986389799999648898899852052400
Q 000808 828 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 828 ~~lSgGerkr~~ia~~l----~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l 903 (1275)
..+|+|||+...++..+ ..++.++++|||-++|++.....+.+.|+..++ +.-+|+|+|.| .+.+.+|++...
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 102577766777776655654226744554320335797899999999998554-88799998988--999732428999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=2.8e-09 Score=71.90 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCCCCCCCCCHHHHHHH----HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 53356243322369877----73497087872798560469999999999999683299899995389915894102488
Q 000808 142 VRGISGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 217 (1275)
Q Consensus 142 ~~~LSGGQKrRlsIA~a----l~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~ 217 (1275)
...+|+|||+.+.++.. ...++++++.|||-++||+.....+.+.++.... +.-+++ ++|++++.+.+|++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvii--tTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIV--ITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEE--ECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEE--EECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--887999--989889997324289
Q ss_pred E--ECCC
Q ss_conf 8--6498
Q 000808 218 L--LSDA 222 (1275)
Q Consensus 218 v--L~~G 222 (1275)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=3.7e-09 Score=71.12 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEE
Q ss_conf 7798898999999999----51996879949999999999999999999986389799999648898899852052400
Q 000808 829 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM 903 (1275)
Q Consensus 829 ~lSgGerkr~~ia~~l----~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l 903 (1275)
-+|||||.++++|..+ ..+++++++|||+++||+.....+.+.|++.+..+.-+|+++|+| .+.+..|+.+..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=5.8e-08 Score=63.62 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=56.3
Q ss_pred CCCCCCCCCCHHHHHH--HH--HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 5335624332236987--77--3497087872798560469999999999999683299899995389915894102488
Q 000808 142 VRGISGGQKKRVTTGE--MM--VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 217 (1275)
Q Consensus 142 ~~~LSGGQKrRlsIA~--al--~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~ 217 (1275)
...+|||||.++++|- |+ ..++++++||||+++||+..+..+.+.+++... .+.-++ +++|.+++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I--~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFI--VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEE--EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEE--EEECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728-998899--9958789997366179
Q ss_pred EE
Q ss_conf 86
Q 000808 218 LL 219 (1275)
Q Consensus 218 vL 219 (1275)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.88 E-value=0.00049 Score=38.91 Aligned_cols=62 Identities=10% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 8989999999995199687994999999999999999999-998638979999964889889985
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFES 896 (1275)
Q Consensus 833 Gerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l-~~~~~~~~tvi~~~H~p~~~~~~~ 896 (1275)
.|-++++-....+++..++++||.-+|=|+.....+...+ +.+.+.+..+++++|.. ++.++
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 8678898775028977278554545686233200258888888862376137865202--33322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.84 E-value=9.9e-05 Score=43.30 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=75.7
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 22112138999477399999699996899999897899--9961899999939107833344449996368988999999
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1275)
Q Consensus 703 ~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~--~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv 780 (1275)
..-|+++.+-+.||+++.|.|++|+||||++.-++-.. ..+ ..+.|+.- .++.
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-------------------~~v~~~s~------E~~~ 76 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-------------------KKVGLAML------EESV 76 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-------------------CCEEEEES------SSCH
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCEEEEEE------CCCH
T ss_conf 3668887469789808999947999799999999972655336-------------------63457640------1111
Q ss_pred HHHH-HHHHH-CCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9999-99876-0599999988999-----999999999299743334346898887798898999999999519968799
Q 000808 781 YESL-LYSAW-LRLPPEVDSETQK-----MFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1275)
Q Consensus 781 ~e~l-~f~~~-~~~~~~~~~~~~~-----~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~l 853 (1275)
.+.. ++.+. .+.+.......+. ...+++.+.+.-....... +........+.....-...--.+|+++++
T Consensus 77 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vvI 153 (277)
T d1cr2a_ 77 EETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLY---DSFAEAETDRLLAKLAYMRSGLGCDVIIL 153 (277)
T ss_dssp HHHHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEE---CCC-CCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE---CCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 357769999864587101012222214567788898874035214662---14331068999998654321367625997
Q ss_pred ECCC-----CCCC--HHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 4999-----9999--99999999999998638-9799999648
Q 000808 854 DEPT-----SGLD--ARAAAIVMRTVRNTVDT-GRTVVCTIHQ 888 (1275)
Q Consensus 854 DEpt-----sgLD--~~~~~~i~~~l~~~~~~-~~tvi~~~H~ 888 (1275)
|-.+ .+-+ ......++..++.++++ +++|++++|-
T Consensus 154 D~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 154 DHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 0542120346544306778999999999765016552031035
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.73 E-value=1e-04 Score=43.27 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898389999978989798
Q 000808 2 TLLLGPPCSGKTTLLLAL 19 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~L 19 (1275)
++|-|||.+||||+|+.+
T Consensus 38 ~iiTGpN~~GKSt~lk~i 55 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQT 55 (224)
T ss_dssp EEEESCSSSSHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHH
T ss_conf 999788734532345565
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=0.00024 Score=40.86 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHC-CCEEEEEECCCC
Q ss_conf 898999999999519968799499999999999999999-9998638-979999964889
Q 000808 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT-GRTVVCTIHQPS 890 (1275)
Q Consensus 833 Gerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~-l~~~~~~-~~tvi~~~H~p~ 890 (1275)
.|-+|++-.....++.+++++||+-+|=++.....+... ++.+..+ ++.+++++|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00028 Score=40.45 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=12.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7399999699996899999897
Q 000808 716 GVLTALMGVSGAGKTTLMDVLA 737 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~ 737 (1275)
+.++.|-|||.+||||+|+.++
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHH
T ss_conf 5399995467313689999879
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=0.00011 Score=42.95 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77399999699996899999897899
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+|..++++|+||.|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.00013 Score=42.63 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 898389999978989798299999983237999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVT 34 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~ 34 (1275)
++++|+||.|||||+|.|.|...- .+|+|.
T Consensus 98 ~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 98 STMAGLSGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred EEEECCCCCCHHHHHHHHCCHHHH---HCCCCC
T ss_conf 899788987788887730535550---106842
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00012 Score=42.84 Aligned_cols=24 Identities=33% Similarity=0.263 Sum_probs=19.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+++|+|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.96 E-value=5e-05 Score=45.15 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77399999699996899999897899
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.|..+.++|+||+|||||+|.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.96 E-value=0.00027 Score=40.56 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+|||||||||+++.|..+.+
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999999999999984589
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0075 Score=31.48 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=72.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH-HHHHHC
Q ss_conf 94773999996999968999998978999-9618999999391078333444499963689889999999999-998760
Q 000808 713 FRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESL-LYSAWL 790 (1275)
Q Consensus 713 i~~G~~~~i~G~sGsGKsTll~~l~g~~~-~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l-~f~~~~ 790 (1275)
+.||+++.|.|++|+|||||+--|+.... ++.. .+.... -...+.|+.-++ +..+.. ++.+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~------~~~~~~---~~~~vl~~~~E~------~~~~~~~Rl~~~~ 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDL------LEVGEL---PTGPVIYLPAED------PPTAIHHRLHALG 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCT------TCCCCC---CCCCEEEEESSS------CHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC------CCCCCC---CCCCEEEEECCC------HHHHHHHHHHHHH
T ss_conf 5589589999289998999999999999769972------111235---787368985123------4999999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C--CCHHHH
Q ss_conf 59999998899999999999929974333434689888779889899999999951996879949999---9--999999
Q 000808 791 RLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G--LDARAA 865 (1275)
Q Consensus 791 ~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts---g--LD~~~~ 865 (1275)
. ....... ......+.+....+... .... + ..+.--.....+++++++|.-+. + -|....
T Consensus 91 ~---~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~--~-~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~ 155 (274)
T d1nlfa_ 91 A---HLSAEER----QAVADGLLIQPLIGSLP-----NIMA--P-EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPM 155 (274)
T ss_dssp T---TSCHHHH----HHHHHHEEECCCTTSCC-----CTTS--H-HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHH
T ss_pred H---CCCHHHH----HCCCCCCEECCCCCCCC-----HHHH--H-HHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHH
T ss_conf 2---3686665----31233323214567420-----3578--9-99999887526765896281354226652322568
Q ss_pred HHHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 9999999998638-97999996488
Q 000808 866 AIVMRTVRNTVDT-GRTVVCTIHQP 889 (1275)
Q Consensus 866 ~~i~~~l~~~~~~-~~tvi~~~H~p 889 (1275)
..+++.++.+++. +++++++.|..
T Consensus 156 ~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 156 AQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 9999887777644797540131005
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0061 Score=32.03 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=41.2
Q ss_pred HHHHCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHH----HCCCEEEEEECCCCHHHHHHHHHHHEEE-CCC
Q ss_conf 9951996879949999----------999999999999999986----3897999996488988998520524000-595
Q 000808 843 ELVANPSIIFMDEPTS----------GLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPSIDIFESFDELFLMK-RGG 907 (1275)
Q Consensus 843 ~l~~~p~il~lDEpts----------gLD~~~~~~i~~~l~~~~----~~~~tvi~~~H~p~~~~~~~fd~~~~l~-~~g 907 (1275)
+--..|.|+++||.=+ +-+......+...+..+- ..+.-+|+|+.+|.. .|.-++-. +=.
T Consensus 100 A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~-----ld~al~R~gRfd 174 (256)
T d1lv7a_ 100 AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV-----LDPALLRPGRFD 174 (256)
T ss_dssp HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT-----SCGGGGSTTSSC
T ss_pred HHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-----CCHHHCCCCCCC
T ss_conf 997599899997756657567898888748999999999999538777799899980799310-----798576898787
Q ss_pred EEEEECCCCCCCHHHHHHHHC
Q ss_conf 799987998650279988741
Q 000808 908 QEIYVGPLGRHSCHLIRYFEG 928 (1275)
Q Consensus 908 ~~~~~g~~~~~~~~~~~yf~~ 928 (1275)
+.++.++++. ++....+..
T Consensus 175 ~~i~i~~P~~--~~R~~il~~ 193 (256)
T d1lv7a_ 175 RQVVVGLPDV--RGREQILKV 193 (256)
T ss_dssp EEEECCCCCH--HHHHHHHHH
T ss_pred EEEECCCCCH--HHHHHHHHH
T ss_conf 7987799599--999999998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.84 E-value=0.0042 Score=33.04 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=36.8
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99999519968799499999999999999999999863897999996488988998520524
Q 000808 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELF 901 (1275)
Q Consensus 840 ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~ 901 (1275)
+..+|=.+|++++..|.. |..++...+ +.+..|..|+.|.|-.+ .+..+++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676--676654321
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.83 E-value=0.00046 Score=39.06 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77399999699996899999897899
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00044 Score=39.20 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++|.|++|||||||++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00059 Score=38.42 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=14.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999969999689999989789
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
|.++.|+||||+|||||.+.|..+
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 809999999999999999999863
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.71 E-value=0.00049 Score=38.93 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++|+|++|+|||||+|.|.|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.67 E-value=0.00016 Score=41.97 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
++++|+||.|||||+|.|.|..
T Consensus 100 ~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 100 TVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp EEEEESHHHHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHCCHH
T ss_conf 9998778734878987515176
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.65 E-value=0.00042 Score=39.31 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+++|+||+|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.61 E-value=0.00047 Score=39.00 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|++|+|||||+|.|+|+-
T Consensus 26 I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9998999987999999852987
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.59 E-value=0.0047 Score=32.72 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=40.4
Q ss_pred HCCCEEEEECC----------CCCCCHHHHHHHHHHHHHHH---HC-CCEEEEEECCCCHHHHHHHHHHHEE-ECCCEEE
Q ss_conf 19968799499----------99999999999999999986---38-9799999648898899852052400-0595799
Q 000808 846 ANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV---DT-GRTVVCTIHQPSIDIFESFDELFLM-KRGGQEI 910 (1275)
Q Consensus 846 ~~p~il~lDEp----------tsgLD~~~~~~i~~~l~~~~---~~-~~tvi~~~H~p~~~~~~~fd~~~~l-~~~g~~~ 910 (1275)
..|.|+++||. ..+-+......+...+..+- .. +..+|.++.+|. ..|.-++- .+=.+.+
T Consensus 100 ~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~-----~ld~al~R~~Rf~~~i 174 (247)
T d1ixza_ 100 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALLRPGRFDRQI 174 (247)
T ss_dssp SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG-----GSCGGGGSTTSSCEEE
T ss_pred CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC-----CCCHHHCCCCCCCEEE
T ss_conf 69979999773664746789988875899999999999963877789989998079940-----0699675898785799
Q ss_pred EECCCCCCCHHHHHHHHC
Q ss_conf 987998650279988741
Q 000808 911 YVGPLGRHSCHLIRYFEG 928 (1275)
Q Consensus 911 ~~g~~~~~~~~~~~yf~~ 928 (1275)
++++++. ++....+..
T Consensus 175 ~~~~P~~--~eR~~il~~ 190 (247)
T d1ixza_ 175 AIDAPDV--KGREQILRI 190 (247)
T ss_dssp ECCSCCH--HHHHHHHHH
T ss_pred EECCCCH--HHHHHHHHH
T ss_conf 9799699--999999998
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.57 E-value=0.00066 Score=38.11 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=64.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89994773999996999968999998978999961899999939107833344449996368988999999999999876
Q 000808 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAW 789 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~ 789 (1275)
...++.+.-+.|.|++||||||+|++|.+....... -+.+...+ .+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~r--ivtiEd~~-----------------El--------------- 205 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER--IISIEDTE-----------------EI--------------- 205 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCC--EEEEESSC-----------------CC---------------
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCC--EEECCCHH-----------------HH---------------
T ss_conf 999983788899940356625789998653014562--33113226-----------------55---------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 05999999889999999999992997433343468988877988989999999995199687994999999999999999
Q 000808 790 LRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869 (1275)
Q Consensus 790 ~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~ 869 (1275)
.++... .+..... ..+++-.+ .+-.+|=.+|+.++++|-..+ ++. .+.
T Consensus 206 -~l~~~~-------------------~~~~~~~----~~~~~~~~----ll~~~lR~~pd~iivgEiR~~---ea~-~~l 253 (323)
T d1g6oa_ 206 -VFKHHK-------------------NYTQLFF----GGNITSAD----CLKSCLRMRPDRIILGELRSS---EAY-DFY 253 (323)
T ss_dssp -CCSSCS-------------------SEEEEEC----BTTBCHHH----HHHHHTTSCCSEEEESCCCST---HHH-HHH
T ss_pred -HCCCCC-------------------CCCEECC----CCCHHHHH----HHHHHHCCCCCCCCCCCCCCH---HHH-HHH
T ss_conf -111124-------------------5410014----65424999----999974349985457866746---599-999
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEE
Q ss_conf 99999863897999996488988998520524000
Q 000808 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 870 ~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~ 904 (1275)
+. +...+.-+++|+|-.+. .+.++++.-|.
T Consensus 254 ~a---~~tGh~g~~tT~Ha~s~--~~a~~Rl~~l~ 283 (323)
T d1g6oa_ 254 NV---LCSGHKGTLTTLHAGSS--EEAFIRLANMS 283 (323)
T ss_dssp HH---HHTTCSCEEEEECCSSH--HHHHHHHHHHH
T ss_pred HH---HHHCCCCEEEEECCCCH--HHHHHHHHHHC
T ss_conf 99---98169857998787999--99999999852
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00082 Score=37.51 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=19.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 477399999699996899999897899
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=3.6e-05 Score=46.05 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=24.9
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 112138999477399999699996899999897
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 737 (1275)
Q Consensus 705 il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~ 737 (1275)
-+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 870279974998-08998899998799999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.52 E-value=0.00099 Score=37.01 Aligned_cols=24 Identities=46% Similarity=0.527 Sum_probs=21.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|.||+||||||+.+.|+.++.
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988999988999999999959
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.50 E-value=0.0004 Score=39.48 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999996999968999998978999
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
|.++.|+|||||||||+.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.46 E-value=0.001 Score=36.88 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 477399999699996899999897899
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+.|.++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=9e-05 Score=43.56 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=18.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898389999978989798299
Q 000808 1 MTLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~ 22 (1275)
+|+|+|||||||||+|++|.--
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 0899889999879999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.43 E-value=0.0012 Score=36.58 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=10.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983899999789897982999
Q 000808 3 LLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~LaG~~ 23 (1275)
+|.||+||||||+.+.|+-++
T Consensus 9 ~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 9 LITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp EEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCHHHHHHHHHHHH
T ss_conf 998289998899999999985
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.35 E-value=0.00046 Score=39.10 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898389999978989798299999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~ 25 (1275)
..|+|++|||||||++.|..++..
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999809999899999999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.31 E-value=0.0011 Score=36.79 Aligned_cols=22 Identities=55% Similarity=0.570 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|.||+||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.30 E-value=0.0014 Score=36.07 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=25.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCC
Q ss_conf 399999699996899999897899-99618999999391
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGY 754 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~-~~~~~~G~i~~~g~ 754 (1275)
..++|+|++|||||||++.|..+. ..|..-+.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.30 E-value=0.0013 Score=36.31 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=11.8
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983899999789897982999
Q 000808 3 LLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~LaG~~ 23 (1275)
+|.||+|||||||.+.|+-.+
T Consensus 11 ~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 11 AILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEECCTTSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998999998999999999984
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.29 E-value=0.0013 Score=36.23 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
-+||+|++|+|||||+|+|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.28 E-value=0.00068 Score=38.01 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.26 E-value=0.0011 Score=36.63 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
.+++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.25 E-value=0.0013 Score=36.34 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|++|+|||||+|.|.|+-
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.24 E-value=0.00089 Score=37.30 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999996999968999998978999
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
..+.+.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0011 Score=36.73 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|+||||+||+||.+.|.-+.+
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999999999986398
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.0014 Score=36.13 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+|++|++|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.23 E-value=0.0017 Score=35.48 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|++|+|||||++.|+|.-
T Consensus 11 V~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999997787
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.22 E-value=0.00097 Score=37.06 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699996899999897899
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
..++|.||+|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0011 Score=36.59 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|+||+||||||+.+.|+.++.
T Consensus 8 iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999898999999999869
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.19 E-value=0.0015 Score=35.84 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++|+|++|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.0019 Score=35.28 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|++|+|||||++.|+|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.17 E-value=0.0016 Score=35.67 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++||-|++|||||||.+.|+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789887899999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.0014 Score=35.96 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+|||||||+||++.|+-+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.16 E-value=0.0012 Score=36.43 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.|.||+||||||+.+.|+..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899999989999999998
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.15 E-value=0.0013 Score=36.34 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
..|.|+|||||||+.+.|...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999999999999995
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.00091 Score=37.24 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+||||+||+||++.|..+.+
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999899999999999997097
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0022 Score=34.80 Aligned_cols=24 Identities=42% Similarity=0.774 Sum_probs=14.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999969999689999989789
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
|=.++++|++++|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0013 Score=36.23 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|++|+|||||+|.|.|.-
T Consensus 6 V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 6 IIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996799
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.08 E-value=0.0023 Score=34.71 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999996999968999998978
Q 000808 717 VLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++.|.|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.08 E-value=0.0012 Score=36.50 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+||+||||||+.+.|+-.
T Consensus 9 I~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 9 VFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999889999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.0017 Score=35.53 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++|+|++|+|||||+|.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0019 Score=35.18 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
..|.||+|+|||||++.++..+.
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988999719999999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0024 Score=34.60 Aligned_cols=20 Identities=40% Similarity=0.704 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999968999998978
Q 000808 719 TALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g 738 (1275)
++++|.+++|||||+|.|.|
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99997999989999999958
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.05 E-value=0.0018 Score=35.38 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|||||||+|+.+.|+-+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.04 E-value=0.0016 Score=35.61 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+|.+|+|||||+|.|.|+-.
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999869999999858984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.04 E-value=0.0018 Score=35.40 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=24.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4773999996999968999998978999
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
++|-.+.|.||+||||||+.+.|+.+..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.02 E-value=0.0016 Score=35.74 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++|+|++|+|||||+|.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.003 Score=33.98 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=25.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89994773999996999968999998978
Q 000808 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
.|-+++|+++.|.||+|+|||||..-++.
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 58985997999995899999999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0021 Score=34.92 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4773999996999968999998978
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
...-.+||.||+|||||||++.|..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9832897438999989999999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.01 E-value=0.002 Score=35.01 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++++|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.00 E-value=0.0026 Score=34.35 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++|+|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.0019 Score=35.23 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+|.+|+|||||+|+|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0023 Score=34.71 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996999968999998978999
Q 000808 719 TALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
+.|+|||||||+||.+.|+....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.95 E-value=0.0014 Score=36.09 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|++++|||||+|.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.93 E-value=0.026 Score=28.03 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=75.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 8999477399999699996899999897899-996189999993910783334444999636898899999999999987
Q 000808 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSA 788 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~sGsGKsTll~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~ 788 (1275)
.|-+++|+++.|.|++|+|||++..-++... ..+ ....|+.-+ .+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-------------------~~~~~is~e------~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANK-------------------ERAILFAYE------ESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-------------------CCEEEEESS------SCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-------------------CCCCEEECC------CCHHHHHHHHH
T ss_conf 68986984999991899999999999999998723-------------------244112126------79999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHHH
Q ss_conf 6059999998899999999999929974333434689888779889899999999-951996879949999---999999
Q 000808 789 WLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDARA 864 (1275)
Q Consensus 789 ~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~-l~~~p~il~lDEpts---gLD~~~ 864 (1275)
.... +.. +. ...+.....+... ......+. .-.+... --.+|++++.|.-+. +.+...
T Consensus 75 ~~~~----~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWGM----DFE-------EM-ERQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTSC----CHH-------HH-HHTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCCC----CHH-------HH-HHCCCEEEEEEEC-----CHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 8299----869-------98-5458617997300-----01017999-99999999840885332204314304899999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCCC---------HHHHHHHHHHHEEE
Q ss_conf 999999999986-38979999964889---------88998520524000
Q 000808 865 AAIVMRTVRNTV-DTGRTVVCTIHQPS---------IDIFESFDELFLMK 904 (1275)
Q Consensus 865 ~~~i~~~l~~~~-~~~~tvi~~~H~p~---------~~~~~~fd~~~~l~ 904 (1275)
.......+...+ +.+.+++++.|... ..+.+..|.++.+.
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999999998698399998567512554457764046421699999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.93 E-value=0.003 Score=33.97 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=18.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399999699996899999897899
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
..++.|.|++||||||+-+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8599998999999899999999972
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.92 E-value=0.0014 Score=36.11 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
-+||+|++++|||||+|.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.92 E-value=0.0029 Score=34.07 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|.||+||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989999998999999999809
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0018 Score=35.33 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.|+||+||||||+-+.|+.
T Consensus 10 iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999998999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.91 E-value=0.0016 Score=35.71 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=8.1
Q ss_pred EEEEECCEEEEEECCC
Q ss_conf 8999477399999699
Q 000808 710 SGAFRPGVLTALMGVS 725 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~s 725 (1275)
++.++-|..+.++.|+
T Consensus 100 ~a~Lp~G~Rv~~v~~p 115 (323)
T d1g6oa_ 100 SSNLANGERVQIVLSP 115 (323)
T ss_dssp EEECTTSCEEEEECTT
T ss_pred EEEECCCEEEEEECCC
T ss_conf 6772685389982467
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.003 Score=33.94 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999996999968999998978999
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
..+.|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.88 E-value=0.0021 Score=34.99 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0027 Score=34.25 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889997199999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0029 Score=34.02 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|-|++||||||+.+.|+-.+.
T Consensus 5 IgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989997879999999999964
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0025 Score=34.45 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
..+.||+||||||+.+.|+-++.
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999999999999999969
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.85 E-value=0.0018 Score=35.41 Aligned_cols=24 Identities=38% Similarity=0.303 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.84 E-value=0.0027 Score=34.23 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+.|+||+||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.026 Score=28.09 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=30.5
Q ss_pred HHHCCCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 77349708787279856-----046999999999999968329989999538991
Q 000808 158 MMVGPALALFMDEISTG-----LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP 207 (1275)
Q Consensus 158 al~~~~~IllLDEPTSg-----LDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~ 207 (1275)
....+++++++|--+.- -|......++..++..+...+.+ ++.+||...
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~-vi~v~H~~K 181 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASK 181 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC--
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC-EEHHHHCCC
T ss_conf 752676589628135422665232256899998877776447975-401310055
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.83 E-value=0.0014 Score=36.07 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
..|.|++||||||+.+.|+.++.
T Consensus 6 I~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999999728
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.81 E-value=0.0028 Score=34.14 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|++|+|||||++.|+|.-
T Consensus 8 I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999996888
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.81 E-value=0.0036 Score=33.49 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=11.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 77399999699996899999897
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLA 737 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~ 737 (1275)
+|-.+.|+||+||||||.-+.|+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 96389998999998899999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.81 E-value=0.0026 Score=34.40 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.80 E-value=0.0023 Score=34.67 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|.|++||||||+.+.|+-++.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989999898999999999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.78 E-value=0.035 Score=27.22 Aligned_cols=149 Identities=16% Similarity=0.087 Sum_probs=69.8
Q ss_pred EEECE-EEEEECCEEEEEECCCCCCHHHHHHHHHC--CCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 11213-89994773999996999968999998978--9999618999999391078333444499963689889999999
Q 000808 705 LLNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVY 781 (1275)
Q Consensus 705 il~~v-s~~i~~G~~~~i~G~sGsGKsTll~~l~g--~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~ 781 (1275)
-|+++ .|-+++|+++.|.|++|+|||+|..-++. ...++ ....|+.-+ .+..
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~-------------------~~~~~~s~e------~~~~ 68 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-------------------EPGVFVTFE------ETPQ 68 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-------------------CCEEEEESS------SCHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCCCCCCC------CCHH
T ss_conf 798855689969839999947999999999999999998568-------------------874201266------7999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHH--HCCCEEEEECCCC
Q ss_conf 9999987605999999889999999999992997433343468988877988989-999999995--1996879949999
Q 000808 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTS 858 (1275)
Q Consensus 782 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk-r~~ia~~l~--~~p~il~lDEpts 858 (1275)
+.......... . .+...+.............. ........... .+.-....+ .+|+++++|--+.
T Consensus 69 ~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~ 136 (242)
T d1tf7a1 69 DIIKNARSFGW----D-------LAKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTS 136 (242)
T ss_dssp HHHHHHGGGTC----C-------HHHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTT
T ss_pred HHHHHHHHCCC----C-------HHHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999998499----8-------48988714302444210335-444430245899999999998863122200207889
Q ss_pred CC----CHHHH-HHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99----99999-9999999998638979999964889
Q 000808 859 GL----DARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 890 (1275)
Q Consensus 859 gL----D~~~~-~~i~~~l~~~~~~~~tvi~~~H~p~ 890 (1275)
=. +.... ..+...++...+.++|++++.|...
T Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 137 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9876057267899999999999863971688421025
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0025 Score=34.42 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++|++++|||||++.|+|.-.
T Consensus 4 I~lvG~~nvGKSsLin~l~~~~~ 26 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGREA 26 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999989999999968886
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.77 E-value=0.0036 Score=33.45 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999689999989789
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.++.|+||+||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0024 Score=34.58 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||..+.|+-.+
T Consensus 4 I~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997999999899999999986
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.75 E-value=0.0032 Score=33.80 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699996899999897899
Q 000808 719 TALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+.|+||||||||||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.72 E-value=0.0045 Score=32.89 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEEC
Q ss_conf 7739999969999689999989789-9996189999993
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITIS 752 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g~-~~~~~~~G~i~~~ 752 (1275)
..-.+||.||+|||||||++.|... ...+..-+-+.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.70 E-value=0.0021 Score=34.88 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699996899999897899
Q 000808 719 TALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+||+|++++|||||+|.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0033 Score=33.71 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.+++|||||+|.|.|.-
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999799998999999995898
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.0043 Score=32.99 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+||+||||||+.+.|+-.+.
T Consensus 11 I~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999998999999999859
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.65 E-value=0.0026 Score=34.32 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=11.1
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983899999789897982999
Q 000808 3 LLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~LaG~~ 23 (1275)
+++|++|+|||||++.|.+..
T Consensus 17 ~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 17 VFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEETTSSHHHHHHHHSCC-
T ss_pred EEECCCCCCHHHHHHHHHCCC
T ss_conf 999999989899999996788
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.64 E-value=0.0036 Score=33.48 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999968999998978
Q 000808 719 TALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g 738 (1275)
+||+|++.||||||+|.|.+
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0023 Score=34.67 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999689999989789
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.|-++.|+|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.61 E-value=0.0035 Score=33.56 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||..+.|+-++
T Consensus 6 iil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999986
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.59 E-value=0.0035 Score=33.56 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999987
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.59 E-value=0.0036 Score=33.45 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
..++|++||||||+.+.|+-.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999949
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.59 E-value=0.0045 Score=32.87 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999689999989789
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.58 E-value=0.0037 Score=33.37 Aligned_cols=23 Identities=48% Similarity=0.550 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+|++||||||+.+.|+-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.52 E-value=0.0033 Score=33.74 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
..+.|+|||||||+.+.|+-++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0021 Score=34.95 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|.||+|+|||||++.|+..+.
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97438999989999999999997
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.51 E-value=0.0036 Score=33.50 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|++.+|||||+|.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.48 E-value=0.0031 Score=33.89 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|++.+|||||++.|++.
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999969985499999999823
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.48 E-value=0.003 Score=33.94 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999689999989789
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
-.++|+|++|+|||||++.|.+.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 78999999998989999999678
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0022 Score=34.78 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699996899999897899
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
-.++|+|++++|||||+|.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.48 E-value=0.003 Score=33.99 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=12.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 73999996999968999998978
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
+.++.|+||+||||||+-+.|+.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 82899989999987999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.48 E-value=0.0035 Score=33.54 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=20.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4773999996999968999998978
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
+.-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.45 E-value=0.0043 Score=33.01 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||+.+.|+-.+
T Consensus 9 IiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999997
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.44 E-value=0.0055 Score=32.32 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+|+..+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.44 E-value=0.0044 Score=32.95 Aligned_cols=22 Identities=59% Similarity=0.841 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.41 E-value=0.0038 Score=33.32 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.|||||||+.+.|+..+
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.40 E-value=0.0045 Score=32.84 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|++|+|||||++.|.+.-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.0046 Score=32.82 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++|++|+|||||++.|.+...
T Consensus 3 I~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999999999958998
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0039 Score=33.23 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
++||-|++||||||+-+.|+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.33 E-value=0.0067 Score=31.79 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999689999989789
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.++.++|.+||||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.33 E-value=0.0041 Score=33.10 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|-||+||||||..+.|+-.+.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99789998798999999999969
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.33 E-value=0.0049 Score=32.65 Aligned_cols=23 Identities=43% Similarity=0.561 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++|++||||||+.+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.32 E-value=0.0054 Score=32.36 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
..|+||+||||||+.+.|+-.+
T Consensus 11 I~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 11 IFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998799999999986
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0042 Score=33.08 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0067 Score=31.79 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+.|+||+||||||.-+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.0055 Score=32.32 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+||+||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.23 E-value=0.0055 Score=32.32 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+.|+||+||||||+-+.|+...
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.23 E-value=0.0042 Score=33.07 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.++|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0032 Score=33.82 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+|++++|||||+|.|.|.-.
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999989999999858985
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.22 E-value=0.0062 Score=31.98 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++|++|+|||||++.|.+...
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999899999999808998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.21 E-value=0.0043 Score=32.99 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|++|+|||||++.|.+.-
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999998099
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.21 E-value=0.0058 Score=32.19 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=24.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 898389999978989798299999983237999899
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNG 37 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G 37 (1275)
.++.||+|+|||||.++|++++.. +-+.+|+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC-----CEEEEEC
T ss_conf 998897998899999999998651-----5489832
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.19 E-value=0.007 Score=31.66 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=18.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898389999978989798299
Q 000808 1 MTLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~ 22 (1275)
+.+++|++||||||+.+.++-.
T Consensus 16 liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999899999999976
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0065 Score=31.85 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996999968999998978999
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
.+.|.||+||||||+-+.|+-+..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.0093 Score=30.89 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996999968999998978999
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
.+.+.||+|+||||+.++++....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.18 E-value=0.0066 Score=31.82 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699996899999897899
Q 000808 719 TALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+.|+|++||||||+-+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.18 E-value=0.0052 Score=32.44 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.17 E-value=0.0059 Score=32.12 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.+|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0047 Score=32.74 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.15 E-value=0.0071 Score=31.63 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.0069 Score=31.69 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++||.|++||||||+-+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999689999876899999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.13 E-value=0.0087 Score=31.06 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 47739999969999689999989789
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+.|.++.+.|.|||||||+-+.|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.0082 Score=31.24 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=25.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89994773999996999968999998978
Q 000808 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
.|-+++|+++.|.|++|+|||||..-++.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.13 E-value=0.0088 Score=31.02 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 47739999969999689999989789
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.|+-++.+.||+||||||++..+...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 41054898767877744779998666
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.10 E-value=0.0078 Score=31.34 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++|.||+||||||.-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0056 Score=32.27 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=19.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|.||+||||+|+-+.|+-++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.01 E-value=0.0072 Score=31.58 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
..|.||+|+|||||++.|...+
T Consensus 54 igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8611799888999999999987
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.01 E-value=0.0055 Score=32.30 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++++|++|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.96 E-value=0.0091 Score=30.95 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.0025 Score=34.47 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
..+.|+|||||||+.+.|+-++.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999997
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.94 E-value=0.0068 Score=31.74 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999689999989789
Q 000808 719 TALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+.++||+|+|||-|.+.||+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 799899998899999999987
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.93 E-value=0.0096 Score=30.79 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+||..+|||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99997248869999999970412
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.92 E-value=0.0078 Score=31.36 Aligned_cols=71 Identities=21% Similarity=0.255 Sum_probs=36.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99687994999999999999999999998638979999964889889985205240005957999879986502799887
Q 000808 847 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYF 926 (1275)
Q Consensus 847 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~~~~~~~~~~yf 926 (1275)
++.++++||.- .+.......+.+.+... .....+|+++++++. +... +.++ -..+.+.++.. .+...+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~-~~~~~~i~~~n~~~~-i~~~-----l~sR-~~~i~~~~~~~--~~~~~~l 177 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMF-SSNVRFILSCNYSSK-IIEP-----IQSR-CAIFRFRPLRD--EDIAKRL 177 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHHT-EEEEECCCCCH--HHHHHHH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-CHHH-----HHCC-CCCCCCCCCCH--HHHHHHH
T ss_conf 72288614344-31214789876411247-764478861487665-6576-----8473-12101233430--4677899
Q ss_pred HC
Q ss_conf 41
Q 000808 927 EG 928 (1275)
Q Consensus 927 ~~ 928 (1275)
..
T Consensus 178 ~~ 179 (231)
T d1iqpa2 178 RY 179 (231)
T ss_dssp HH
T ss_pred HH
T ss_conf 88
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.90 E-value=0.0082 Score=31.21 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=20.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 477399999699996899999897899
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+|+ -+.++||+|+|||.|.++|+...
T Consensus 48 ~~~-~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPK-NILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 986-69998999988889999986213
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.88 E-value=0.0096 Score=30.80 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|-+-+|||||+|+|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.88 E-value=0.0073 Score=31.52 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++++|.-.||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.88 E-value=0.0091 Score=30.95 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+.++|++||||||+-+.|+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.86 E-value=0.01 Score=30.68 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+.|+||+||||||+-+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.85 E-value=0.013 Score=29.87 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=23.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8999477399999699996899999897
Q 000808 710 SGAFRPGVLTALMGVSGAGKTTLMDVLA 737 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~sGsGKsTll~~l~ 737 (1275)
.|-+++|+++.|.||+|+||||+.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.84 E-value=0.0083 Score=31.19 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+||+|+..+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.83 E-value=0.0062 Score=32.00 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|.|++||||||+.+.|+.++.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.83 E-value=0.0058 Score=32.17 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89994773999996999968999998978
Q 000808 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
.|-+++|+++.|.|++|+|||++..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.83 E-value=0.0099 Score=30.72 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+.++|.+|+|||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.81 E-value=0.0049 Score=32.63 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|-|+.||||||+++.|+..++
T Consensus 12 I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 12 VLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999888999999998707
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.0086 Score=31.10 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699996899999897899
Q 000808 719 TALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+.+.||+|+||||+.++++...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.79 E-value=0.0087 Score=31.06 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|+|||.|.++|+..+.
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99989999888899999862132
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.036 Score=27.20 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=10.5
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98389999978989798299
Q 000808 3 LLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~LaG~ 22 (1275)
+|+|++|+|||||++.+.+.
T Consensus 9 ~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 9 LALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEESCTTSSHHHHHHHHHCS
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 99999991989999999619
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.75 E-value=0.0096 Score=30.79 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983899999789897982
Q 000808 2 TLLLGPPCSGKTTLLLALA 20 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~La 20 (1275)
.+|.|++||||||+.+.|.
T Consensus 6 IgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 6 IGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998988778999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.67 E-value=0.009 Score=30.97 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|+|.+|+|||||++.|.+.-.
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999966888
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.63 E-value=0.011 Score=30.41 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699996899999897899
Q 000808 719 TALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.61 E-value=0.058 Score=25.90 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=26.5
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 112138999477399999699996899999897899
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 705 il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+|.....+ .|.-+.+.|+||+|||||...|..+-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 178999999-99999998189999899999999859
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.58 E-value=0.009 Score=30.96 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++++|.-.||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.55 E-value=0.0022 Score=34.80 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|++++|||||+|.|+|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.55 E-value=0.017 Score=29.28 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=34.0
Q ss_pred CCCEEEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHCCCEEEEC
Q ss_conf 497087872798560---469999999999999683299899995389---------915894102488864
Q 000808 161 GPALALFMDEISTGL---DSSTTFQIVNSIRQNIHILNGTAVISLLQP---------APETYDLFDDIILLS 220 (1275)
Q Consensus 161 ~~~~IllLDEPTSgL---Ds~sa~~I~~~l~~~~~~~~~t~ii~i~q~---------~~e~~~lfD~I~vL~ 220 (1275)
.++++++.|..+.-+ +..........+.+.++..+.+++++.|.+ .......+|.++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.014 Score=29.83 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.012 Score=30.16 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+.++||+||||||.-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.53 E-value=0.014 Score=29.80 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+.|+||+||||||+-+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.52 E-value=0.013 Score=29.86 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+..|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.52 E-value=0.0054 Score=32.37 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.0081 Score=31.24 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=29.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9898389999978989798299999983237999899268986654137876654466788
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGE 61 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~~~~i~yv~Q~d~~~~~ 61 (1275)
+.+|.|++||||||+.+.|...+... .....+..++++|.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.46 E-value=0.0078 Score=31.37 Aligned_cols=23 Identities=52% Similarity=0.784 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.++.||+|+|||++.++|+.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.43 E-value=0.012 Score=30.25 Aligned_cols=21 Identities=38% Similarity=0.240 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++||+++|||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999947898499999999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.42 E-value=0.012 Score=30.23 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699996899999897899
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.-+.+.||+|+|||++.++|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.40 E-value=0.0075 Score=31.47 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699996899999897899
Q 000808 719 TALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.015 Score=29.66 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.++.||+|+||||+..+|+..+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987999988899999999987
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.013 Score=30.01 Aligned_cols=21 Identities=52% Similarity=0.885 Sum_probs=10.0
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983899999789897982999
Q 000808 3 LLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~LaG~~ 23 (1275)
++.||+|+|||++.++|+.++
T Consensus 49 LL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 49 LMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHC
T ss_conf 866899888228999999982
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.34 E-value=0.015 Score=29.52 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77399999699996899999897899
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.33 E-value=0.017 Score=29.25 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=18.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 773999996999968999998978
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
.+..++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 977999989999988999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.31 E-value=0.012 Score=30.23 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=11.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
.+||+|.+.+|||||+++|++
T Consensus 12 kiGivG~Pn~GKSTlfnalT~ 32 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITK 32 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799978999989999999977
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.018 Score=29.04 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89994773999996999968999998978
Q 000808 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
.|-+++|+++.|.|++|+|||++.--++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.28 E-value=0.017 Score=29.25 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+.|+||+||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.28 E-value=0.012 Score=30.22 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=0.017 Score=29.17 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+.|+||+||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.24 E-value=0.011 Score=30.33 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999996999968999998978999
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
-+++|-|+.||||||+++.|+....
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.23 E-value=0.016 Score=29.43 Aligned_cols=21 Identities=62% Similarity=0.841 Sum_probs=12.2
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983899999789897982999
Q 000808 3 LLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+.||+|+||||+.++++.++
T Consensus 49 ll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 49 LFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 997899974879999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.15 E-value=0.015 Score=29.66 Aligned_cols=23 Identities=52% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++|++|+|||||++.+.+.-.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~~ 41 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASEDI 41 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999964877
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.14 E-value=0.015 Score=29.60 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.14 E-value=0.017 Score=29.20 Aligned_cols=19 Identities=37% Similarity=0.277 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983899999789897982
Q 000808 2 TLLLGPPCSGKTTLLLALA 20 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~La 20 (1275)
.+|.|+.||||||..+.|.
T Consensus 5 IgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988888788999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.14 E-value=0.015 Score=29.58 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.019 Score=28.96 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=16.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4773999996999968999998978
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
+.|-+++|-|+.||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9805999989988899999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.06 E-value=0.021 Score=28.69 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|..+||||||+|+|+|.-
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCHHHHHHHHHCCC
T ss_conf 9998189897999999996899
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.03 E-value=0.013 Score=30.02 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.02 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++||-|++|||||||-+.|..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.02 Score=28.80 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=26.7
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 2112138999477399999699996899999897899
Q 000808 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 704 ~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+|+.++. |=-.++|+||.++|||||||.|.|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99970799---87999988999997999999980998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.99 E-value=0.011 Score=30.53 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCC---------HHHHHHHHHH-HHHH---H-HCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 9899999999951996879949999999---------9999999999-9998---6-38979999964889889985205
Q 000808 834 QRKRLTIAVELVANPSIIFMDEPTSGLD---------ARAAAIVMRT-VRNT---V-DTGRTVVCTIHQPSIDIFESFDE 899 (1275)
Q Consensus 834 erkr~~ia~~l~~~p~il~lDEptsgLD---------~~~~~~i~~~-l~~~---~-~~~~tvi~~~H~p~~~~~~~fd~ 899 (1275)
++-|-.+..+-...|.|+++||.-.=+. ......+.+. +..+ . +.+.-+|+|+++|.. .|.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-----ld~ 161 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-----IDP 161 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-----TSC
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-----CCH
T ss_conf 999999999986398435687546324557876788737999999999999628677799899991799222-----799
Q ss_pred HHEEE-CCCEEEEECCCCCCCHHHHHHHHC
Q ss_conf 24000-595799987998650279988741
Q 000808 900 LFLMK-RGGQEIYVGPLGRHSCHLIRYFEG 928 (1275)
Q Consensus 900 ~~~l~-~~g~~~~~g~~~~~~~~~~~yf~~ 928 (1275)
-+.=. +=.+.++.+++++ .+-...+..
T Consensus 162 al~r~gRf~~~i~~~~p~~--~~R~~il~~ 189 (265)
T d1r7ra3 162 AILRPGRLDQLIYIPLPDE--KSRVAILKA 189 (265)
T ss_dssp GGGSSTTSEEEEECCCCCC--HHHHHHHHH
T ss_pred HHHCCCCCCEEEEECCHHH--HHHHHHHHH
T ss_conf 7807877647999566078--889999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.99 E-value=0.011 Score=30.39 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHCCCEEEEECCCCCCCHHH------HHHHHHHHHHH----HH-CCCEEEEEECCCCHHHHHHHHHHHEEE-CCCEEE
Q ss_conf 9951996879949999999999------99999999998----63-897999996488988998520524000-595799
Q 000808 843 ELVANPSIIFMDEPTSGLDARA------AAIVMRTVRNT----VD-TGRTVVCTIHQPSIDIFESFDELFLMK-RGGQEI 910 (1275)
Q Consensus 843 ~l~~~p~il~lDEptsgLD~~~------~~~i~~~l~~~----~~-~~~tvi~~~H~p~~~~~~~fd~~~~l~-~~g~~~ 910 (1275)
+-...|.|+++||.=.=....+ ...+...+... .. .+..||+++.+|. ..|.-+.-. +=.+.+
T Consensus 93 A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~-----~ld~al~r~gRfd~~i 167 (258)
T d1e32a2 93 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-----SIDPALRRFGRFDREV 167 (258)
T ss_dssp HHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGG-----GSCGGGTSTTSSCEEE
T ss_pred HHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC-----CCCHHHHHCCCCCCEE
T ss_conf 98649949985211132257887777068999877500110123468811797579931-----0252454246302323
Q ss_pred EECCCCCCCHHHHHHHHCC
Q ss_conf 9879986502799887419
Q 000808 911 YVGPLGRHSCHLIRYFEGI 929 (1275)
Q Consensus 911 ~~g~~~~~~~~~~~yf~~~ 929 (1275)
+.++++. +.....++.+
T Consensus 168 ~~~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 168 DIGIPDA--TGRLEILQIH 184 (258)
T ss_dssp ECCCCCH--HHHHHHHHHT
T ss_pred ECCCCCH--HHHHHHHHHH
T ss_conf 7899998--8999873220
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.96 E-value=0.012 Score=30.12 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++||.|++||||||+.+.|...
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.014 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|++|+|||||++.+.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.017 Score=29.25 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999689999989789
Q 000808 719 TALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+.+-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.94 E-value=0.0068 Score=31.73 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.90 E-value=0.018 Score=29.06 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|++|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.90 E-value=0.038 Score=27.05 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=25.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 112138999477399999699996899999897899
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 705 il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+|. +...-.|.-+.+.|+||+||||+.-.|..+-
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2899-9999999999998089999899999999859
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.89 E-value=0.015 Score=29.60 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
++|.||+|+|||||++.++....
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99986999829999999999779
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.88 E-value=0.016 Score=29.45 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898389999978989798
Q 000808 2 TLLLGPPCSGKTTLLLAL 19 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~L 19 (1275)
.+|+||.|||||||...|
T Consensus 9 i~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999958989989999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.87 E-value=0.02 Score=28.78 Aligned_cols=24 Identities=50% Similarity=0.731 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898389999978989798299999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~ 25 (1275)
.++.||+|+||||+.++|+.++..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 898799997388999999850388
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.87 E-value=0.018 Score=29.04 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399999699996899999897899
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
...+.|.||+|+||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.85 E-value=0.014 Score=29.79 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.023 Score=28.39 Aligned_cols=19 Identities=42% Similarity=0.392 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983899999789897982
Q 000808 2 TLLLGPPCSGKTTLLLALA 20 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~La 20 (1275)
.+|.|+.||||||..+.|.
T Consensus 6 IgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9978988688999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.003 Score=33.96 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.++++|++++|||||+|.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.81 E-value=0.016 Score=29.46 Aligned_cols=20 Identities=50% Similarity=0.443 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+|+||.|+|||||...|..
T Consensus 5 v~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99994889809999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.74 E-value=0.016 Score=29.31 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|+||||.+--|+..+.
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.73 E-value=0.024 Score=28.24 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.71 E-value=0.024 Score=28.30 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|.-+||||||+|+|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997689897999999996898
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.022 Score=28.52 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+++++|++|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.01 Score=30.55 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|-|+.||||||+++.|+..++
T Consensus 5 I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987888779999999999973
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.021 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.65 E-value=0.027 Score=27.98 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.++.||+|+|||++.++|+.+..
T Consensus 43 vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99889699988999999862010
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.018 Score=29.07 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+|.|.||+||||||++.-++....
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999995899999999999999998
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.019 Score=28.87 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|++|+|||||++.+.+..
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.60 E-value=0.022 Score=28.52 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
+.|+|-+-+|||||+++|++-
T Consensus 5 ~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 5 CGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 888899999889999999779
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.54 E-value=0.023 Score=28.43 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.03 Score=27.68 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.+|+|||||++-+.+..
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989979899999997099
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.53 E-value=0.033 Score=27.45 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=17.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999969999689999989789
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
-..++++||+|+||||.+-=|+.+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999889999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.52 E-value=0.022 Score=28.50 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=39.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99687994999999999999999999998638979999964889889985205240005957999879986502799887
Q 000808 847 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYF 926 (1275)
Q Consensus 847 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~~~~~~~~~~yf 926 (1275)
+.+++++||.-. +.......+...+.... ..+..++++++.+. +. +. +.++ -+.+.+.++.. ++...+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~---~~--l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSNK-II---EP--LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SC---HH--HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHHH-HH---HH--HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-33366531474302-10---67--8877-77765313322--4567888
Q ss_pred HC
Q ss_conf 41
Q 000808 927 EG 928 (1275)
Q Consensus 927 ~~ 928 (1275)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
T ss_conf 77
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.51 E-value=0.013 Score=29.86 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|+||||.+--|+-++.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.50 E-value=0.021 Score=28.66 Aligned_cols=23 Identities=52% Similarity=0.743 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.++.||+|+||||+.+++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.017 Score=29.27 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+.+|+||-++|||||||.|.|...
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999889999979999999809987
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.025 Score=28.16 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994773999996999968999998978
Q 000808 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 711 ~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
..+..|+..+|.|++|+|||||+..++.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5645787556867999887899999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.02 Score=28.75 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=13.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999996999968999998978
Q 000808 717 VLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g 738 (1275)
.+++++||+|+||||.+-=|+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999998999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=93.48 E-value=0.13 Score=23.58 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 477399999699996899999897899
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+.+-.++++|.+.+|||||+|.|.|+.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 775278998667544355542542661
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.032 Score=27.50 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.019 Score=28.95 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999996999968999998978999
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
+...+|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.38 E-value=0.019 Score=28.94 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+|+||..+|||||++.|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995889809999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.38 E-value=0.048 Score=26.41 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
+.|+|.+.+|||||+++|++--
T Consensus 13 iGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997899998999999997789
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.35 E-value=0.034 Score=27.38 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898389999978989798299999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~ 25 (1275)
.+|.||+|+||||+++.++..+..
T Consensus 46 lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 46 ATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 688898999899999999999754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.34 E-value=0.038 Score=27.02 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=19.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999969999689999989789
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
..++.++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.019 Score=28.86 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++++|++|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.029 Score=27.78 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.032 Score=27.49 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=10.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 73999996999968999998978
Q 000808 716 GVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
|..+++-|+.||||||+.+.|+.
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 87899989988879999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.30 E-value=0.0099 Score=30.71 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898389999978989798299999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~ 25 (1275)
.++.||+|+|||||.+.+++.+++
T Consensus 31 vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 899889985299999999873798
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.078 Score=25.06 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.29 E-value=0.029 Score=27.79 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.+|+|||||++.+++.-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.023 Score=28.45 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=32.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 989838999997898979829999998323799989926898665413787665446678899899999997
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSA 72 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~~~~i~yv~Q~d~~~~~lTVrEnL~f~a 72 (1275)
+.+|-|++|||||||...|.-.+... .| ....+..++.+|.. +|-.|-...+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY---~t~~~r~~L~~ 81 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFY---LTHEDQLKLNE 81 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGB---CCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCC---CCHHHHHHHHH
T ss_conf 99837998788999999999999987---27-------------78606763567777---88899999852
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.24 E-value=0.05 Score=26.28 Aligned_cols=34 Identities=32% Similarity=0.229 Sum_probs=25.0
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 11213899947739999969999689999989789
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 705 il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
-+|. ++..-.|.-+.|.|+||+||||+.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.23 E-value=0.026 Score=28.09 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=39.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99687994999999999999999999998638979999964889889985205240005957999879986502799887
Q 000808 847 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYF 926 (1275)
Q Consensus 847 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~~~~~~~~~~yf 926 (1275)
+.+++++||.- .+.......+.+.+.... ....++++++++. .+. +. +.++ ...+.+.++.. .++..+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~-~i~---~~--i~sr-~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAH-KLT---PA--LLSQ-CTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG-GSC---HH--HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCC-CCEEECCCCCCHH-HHH---HH--HHHH-HHHHCCCCCCC--CCCCCCC
T ss_conf 71899996632-000237899998863112-0023201267087-759---99--9988-75401235652--0001102
Q ss_pred HC
Q ss_conf 41
Q 000808 927 EG 928 (1275)
Q Consensus 927 ~~ 928 (1275)
..
T Consensus 168 ~~ 169 (227)
T d1sxjc2 168 AN 169 (227)
T ss_dssp HH
T ss_pred CC
T ss_conf 12
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.23 E-value=0.018 Score=29.04 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=18.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999689999989789
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.-.+++++||+|+||||.+-=|+.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.22 E-value=0.027 Score=28.02 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.20 E-value=0.021 Score=28.66 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.++.||+|+|||+|.++++++..
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 78878998763047788787718
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.027 Score=27.92 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.19 E-value=0.024 Score=28.28 Aligned_cols=23 Identities=39% Similarity=0.287 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|+||||.+--|+..+.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.025 Score=28.20 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+|+|++|+|||||++.+.+
T Consensus 7 v~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899298999999971
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.043 Score=26.68 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994773999996999968999998978
Q 000808 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 711 ~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
|-+++|.++-+.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.03 Score=27.70 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.15 E-value=0.031 Score=27.58 Aligned_cols=22 Identities=50% Similarity=0.865 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
..+-||+|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.025 Score=28.14 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.13 E-value=0.026 Score=28.07 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=31.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCC
Q ss_conf 89838999997898979829999998323799989926898665413787665446
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDV 57 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~~~~~i~yv~Q~d~ 57 (1275)
.+++||+|+|||-|.+.||+.+.- -.+.+++-.. -..|||.. |+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~f------TeaGYvG~-DV 95 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKF------TEVGYVGK-EV 95 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGG------C----CCC-CT
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEE------EECCEEEC-CH
T ss_conf 799899998899999999987389-----8898625511------41111104-44
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.13 E-value=0.033 Score=27.41 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699996899999897899
Q 000808 719 TALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+|++|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.039 Score=26.99 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|+||||.+--|+-++.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.032 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.041 Score=26.85 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 47739999969999689999989789
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+|...+.++||+|+|||.|.+.|+..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.11 E-value=0.024 Score=28.29 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++||.|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.032 Score=27.50 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.07 E-value=0.033 Score=27.40 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|+||||.+--|+-++.
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.023 Score=28.43 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.042 Score=26.75 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++-+...
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.041 Score=26.86 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.98 E-value=0.028 Score=27.86 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.+||+|.+.+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.044 Score=26.65 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.92 E-value=0.033 Score=27.43 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.++.|+||+||||+...|..+-.
T Consensus 17 vl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 17 VLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99980899998999999998599
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.033 Score=27.45 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.+|+|||||++.+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989939999999997199
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.90 E-value=0.02 Score=28.80 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
.+.++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.87 E-value=0.025 Score=28.14 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.86 E-value=0.021 Score=28.70 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|++|+|||||++.+.+..
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998899998873387
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.86 E-value=0.03 Score=27.70 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.++.|+||+|||||...|..+-.
T Consensus 18 vli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99981899998999999998597
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.033 Score=27.42 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=10.5
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9838999997898979829
Q 000808 3 LLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~LaG 21 (1275)
+++|.+|+|||||++.+.+
T Consensus 11 ~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 11 LIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999899088999999971
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.84 E-value=0.039 Score=26.96 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.++.||+|+|||++.++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 68766998883089999998748
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.83 E-value=0.041 Score=26.84 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=14.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999689999989789
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
.|.++++-|+-||||||+.+.|+.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7689999899888699999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.028 Score=27.89 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.81 E-value=0.048 Score=26.42 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 94773999996999968999998978
Q 000808 713 FRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 713 i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
.+||.++.+-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.031 Score=27.55 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+|+|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999973
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.024 Score=28.34 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|++|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.75 E-value=0.044 Score=26.66 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++-+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.028 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.++|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=92.74 E-value=0.035 Score=27.25 Aligned_cols=21 Identities=33% Similarity=0.282 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++||..+|||||++.|+..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.73 E-value=0.021 Score=28.69 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.73 E-value=0.024 Score=28.29 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.035 Score=27.23 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|.+|+|||||++.+.+..
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.69 E-value=0.028 Score=27.89 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=43.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99687994999999999999999999998638979999964889889985205240005957999879986502799887
Q 000808 847 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYF 926 (1275)
Q Consensus 847 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~~~~~~~~~~yf 926 (1275)
+.+++++||.-. |...+...+.+.+.... ..+.+|++++.+... .+.+ .++ =..+.+.|+.. +++.++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i----~~~l--~sR-~~~i~~~~~~~--~~~~~~l 199 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPI----IAPI--KSQ-CLLIRCPAPSD--SEISTIL 199 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSS----CHHH--HTT-SEEEECCCCCH--HHHHHHH
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCCH----HHHH--HCC-HHEEEECCCCH--HHHHHHH
T ss_conf 724999424333-45431112210022135-664300010211100----2544--210-00243035330--4689999
Q ss_pred HCC
Q ss_conf 419
Q 000808 927 EGI 929 (1275)
Q Consensus 927 ~~~ 929 (1275)
+.+
T Consensus 200 ~~i 202 (252)
T d1sxje2 200 SDV 202 (252)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.66 E-value=0.03 Score=27.66 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+++||.++|||||+..|..
T Consensus 6 i~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994479999999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.60 E-value=0.031 Score=27.58 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=23.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 89838999997898979829999998323799989926
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHG 39 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~ 39 (1275)
.-+.|.|||||||+.+.|.-++... .-.-.+.++|..
T Consensus 27 IwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDN 63 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHH
T ss_conf 9998999999899999999887774-275089975367
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.57 E-value=0.021 Score=28.63 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++.+++.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.55 E-value=0.03 Score=27.65 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.026 Score=28.09 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999996999968999998978
Q 000808 717 VLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g 738 (1275)
-+++|+|.+|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=0.034 Score=27.30 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++||.|+.||||||..+.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.03 Score=27.69 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.45 E-value=0.033 Score=27.38 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|-|+-||||||+++.|...+.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989987899999999999998
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.049 Score=26.32 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|.+|+|||||++.+.+.
T Consensus 8 ivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999749
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.027 Score=27.97 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.036 Score=27.18 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=4.8
Q ss_pred EEECCCCCCHHHHH
Q ss_conf 98389999978989
Q 000808 3 LLLGPPCSGKTTLL 16 (1275)
Q Consensus 3 aIlGpsGSGKSTLL 16 (1275)
+|+|++|||||+++
T Consensus 54 ~I~G~tGsGKT~~l 67 (433)
T d1e9ra_ 54 LVNGATGTGKSVLL 67 (433)
T ss_dssp EEEECTTSSHHHHH
T ss_pred EEEECCCCCHHHHH
T ss_conf 99907999689999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.034 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.048 Score=26.42 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+++|.+|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.048 Score=26.41 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|+|.+|+|||||++.+.+..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989938899999997199
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.29 E-value=0.054 Score=26.06 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.25 E-value=0.029 Score=27.74 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987899999984488
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.24 E-value=0.028 Score=27.83 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.04 Score=26.90 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.052 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=9.3
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983899999789897982
Q 000808 3 LLLGPPCSGKTTLLLALA 20 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~La 20 (1275)
+|+|.+|+|||||++-+.
T Consensus 10 ~lvG~~~vGKTsLi~r~~ 27 (173)
T d2fn4a1 10 VVVGGGGVGKSALTIQFI 27 (173)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999979969899999997
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.051 Score=26.24 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
..+-||+|+||||+..+++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.11 E-value=0.057 Score=25.90 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.031 Score=27.63 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|++|+|||||++.+++.-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC---
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999908899999998498
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.05 E-value=0.055 Score=26.00 Aligned_cols=18 Identities=44% Similarity=0.632 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898389999978989798
Q 000808 2 TLLLGPPCSGKTTLLLAL 19 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~L 19 (1275)
.+++|.+|+|||||++-+
T Consensus 9 illlG~~~vGKTsll~~~ 26 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999889999989
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.048 Score=26.38 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.++|++|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.01 E-value=0.049 Score=26.34 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.00 E-value=0.034 Score=27.38 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699996899999897899
Q 000808 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.042 Score=26.78 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999689999989789
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
-++.++|.+|+|||||++.+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.91 E-value=0.036 Score=27.20 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=19.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983899999789897982999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~ 23 (1275)
++.|.||+||||||+..-++-..
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998389998899999999986
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.033 Score=27.42 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++++|.+|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.85 E-value=0.053 Score=26.13 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999699996899999897
Q 000808 718 LTALMGVSGAGKTTLMDVLA 737 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~ 737 (1275)
-+||+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.83 E-value=0.065 Score=25.58 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+|+|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899588999999972
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.83 E-value=0.03 Score=27.66 Aligned_cols=23 Identities=43% Similarity=0.462 Sum_probs=17.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983899999789897982999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~ 23 (1275)
+|.|-|.-||||||||+-|....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=0.053 Score=26.15 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.80 E-value=0.053 Score=26.13 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
-++|+|+.|+|||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.80 E-value=0.057 Score=25.91 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
..+.||+|+||||+..+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.79 E-value=0.038 Score=27.05 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999699996899999897
Q 000808 719 TALMGVSGAGKTTLMDVLA 737 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~ 737 (1275)
++++|.-++|||||++.|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.055 Score=26.04 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|.+|+|||||++-+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.066 Score=25.51 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89838999997898979829
Q 000808 2 TLLLGPPCSGKTTLLLALAG 21 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG 21 (1275)
.+++|++|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.055 Score=26.04 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|++|+|||||++-+.+..
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997398
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.069 Score=25.40 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.71 E-value=0.031 Score=27.56 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=18.7
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9838999997898979829999
Q 000808 3 LLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 3 aIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+.||+|+||||+++.++..+.
T Consensus 50 ~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9678999899999999999987
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.048 Score=26.42 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.67 E-value=0.065 Score=25.57 Aligned_cols=18 Identities=50% Similarity=0.671 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898389999978989798
Q 000808 2 TLLLGPPCSGKTTLLLAL 19 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~L 19 (1275)
.+++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.63 E-value=0.047 Score=26.43 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.++.|+||+||||+...|..+-
T Consensus 18 vli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 18 VLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9998089999999999999849
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.63 E-value=0.055 Score=26.04 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=45.1
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH-HHHHHHHEEECCCEEEEECCC
Q ss_conf 5199687994999999-9999999999999986389799999648898899-852052400059579998799
Q 000808 845 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF-ESFDELFLMKRGGQEIYVGPL 915 (1275)
Q Consensus 845 ~~~p~il~lDEptsgL-D~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~-~~fd~~~~l~~~g~~~~~g~~ 915 (1275)
+.+.+++++|+.-.=. +......+..++......|+.+|+++..|..++- ..-|-.--|. .|-++.-.|.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~-~g~~~~i~p~ 166 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE-GGILVEIELD 166 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH-TSEEEECCCC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHH-CCEEEEECCC
T ss_conf 76213010112655058657788999999987631663899548751001343267888861-8568997888
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.066 Score=25.53 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.58 E-value=0.055 Score=26.00 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
..+.||+|+||||+..+++-++
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.072 Score=25.30 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.032 Score=27.47 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.53 E-value=0.045 Score=26.60 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 8983899999789897
Q 000808 2 TLLLGPPCSGKTTLLL 17 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~ 17 (1275)
++|.|++||||||+|-
T Consensus 17 ~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEECCCTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHH
T ss_conf 8999628843899999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.41 E-value=0.042 Score=26.76 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983899999789897982
Q 000808 2 TLLLGPPCSGKTTLLLALA 20 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~La 20 (1275)
.+|+||.|+|||||++.|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.41 E-value=0.042 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|.+|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.40 E-value=0.049 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++++|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.38 E-value=0.053 Score=26.13 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4773999996999968999998978999
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
+.+..+.+.||+|+|||++.++|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.32 E-value=0.065 Score=25.59 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.22 E-value=0.055 Score=26.00 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898389999978989798299
Q 000808 1 MTLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~ 22 (1275)
+++|.|++|+||||++.-++-.
T Consensus 37 l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999947999799999999972
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.056 Score=25.99 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999689999989789
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
=.++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.16 E-value=0.065 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999996999968999998978
Q 000808 717 VLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g 738 (1275)
-++.++|.+|+|||||++-+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7799998999988999998950
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.07 Score=25.35 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++-+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.11 E-value=0.056 Score=25.97 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.059 Score=25.83 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++++|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.07 E-value=0.05 Score=26.31 Aligned_cols=20 Identities=45% Similarity=0.479 Sum_probs=17.2
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 98983899999789897982
Q 000808 1 MTLLLGPPCSGKTTLLLALA 20 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~La 20 (1275)
++.|.||+||||||+..-++
T Consensus 38 ~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998589898899999999
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.07 E-value=0.072 Score=25.30 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=4.4
Q ss_pred EEEEECCCCC
Q ss_conf 8787279856
Q 000808 165 ALFMDEISTG 174 (1275)
Q Consensus 165 IllLDEPTSg 174 (1275)
++++=-+=||
T Consensus 53 ~~I~G~tGsG 62 (433)
T d1e9ra_ 53 LLVNGATGTG 62 (433)
T ss_dssp EEEEECTTSS
T ss_pred EEEEECCCCC
T ss_conf 8999079996
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.07 Score=25.38 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++++|++|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.95 E-value=0.051 Score=26.25 Aligned_cols=15 Identities=40% Similarity=0.570 Sum_probs=9.5
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 898389999978989
Q 000808 2 TLLLGPPCSGKTTLL 16 (1275)
Q Consensus 2 taIlGpsGSGKSTLL 16 (1275)
+.|.|++||||||.|
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.083 Score=24.92 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.+|+|||||++-+.+..
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999969999999997199
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.073 Score=25.24 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.88 E-value=0.074 Score=25.22 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999996999968999998978
Q 000808 717 VLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g 738 (1275)
-++.++|.+|+|||||++-+.+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999999899588999999972
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.88 E-value=0.11 Score=24.07 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=26.0
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1121389994773999996999968999998978
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 705 il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
+++.+ ..+-.|+..+|.|++|.|||+|+..++.
T Consensus 58 aID~l-~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 58 VVDLL-APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEE-CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 03102-5636788777667999898999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.058 Score=25.88 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|-|+.||||||+.+.|.-.+.
T Consensus 5 IviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988879999999999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.72 E-value=0.098 Score=24.44 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999689999989789
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
-.+||+|-+.+|||||+++|++.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.056 Score=25.98 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|-|+.||||||+.+.|.-.+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988899999999999998
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.71 E-value=0.069 Score=25.40 Aligned_cols=19 Identities=32% Similarity=0.322 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983899999789897982
Q 000808 2 TLLLGPPCSGKTTLLLALA 20 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~La 20 (1275)
.+++||+++|||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.70 E-value=0.077 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999699996899999897
Q 000808 718 LTALMGVSGAGKTTLMDVLA 737 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~ 737 (1275)
++.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.068 Score=25.43 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.|+|.+|+|||||++-+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.63 E-value=0.072 Score=25.28 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|+|||.|.+.|+-.+.
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99977875006999999986336
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.59 E-value=0.12 Score=23.91 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=3.9
Q ss_pred HHHHHHHHHC
Q ss_conf 1499999848
Q 000808 231 ELVLDFFESM 240 (1275)
Q Consensus 231 ~~l~~~f~~~ 240 (1275)
++..+||.+.
T Consensus 61 ~~w~~~f~~~ 70 (273)
T d1puja_ 61 QQWKEHFENQ 70 (273)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHC
T ss_conf 9999999846
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.56 E-value=0.093 Score=24.60 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++-+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.54 E-value=0.059 Score=25.82 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=20.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+|.|.|++|+|||+++.-++-..-
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999991799998999999999998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.52 E-value=0.12 Score=24.01 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.49 E-value=0.05 Score=26.30 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 477399999699996899999897899
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.|...+.+.||+|+|||.|.+.|++..
T Consensus 121 ~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 121 YASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 688638887799850889999999986
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.11 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+++|.+|+|||||++-+.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999989989999999997098
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.27 E-value=0.081 Score=24.97 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=18.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898389999978989798299
Q 000808 1 MTLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~ 22 (1275)
++.|.|++|+|||++..-++..
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889988788999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.14 E-value=0.12 Score=23.86 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999996999968999998978
Q 000808 717 VLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g 738 (1275)
=-++++|..++|||||++.|..
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHH
T ss_conf 1999994789849999999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.08 E-value=0.1 Score=24.27 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=30.4
Q ss_pred HCCCEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 3497087872798560-4699999999999996832998999953899158
Q 000808 160 VGPALALFMDEISTGL-DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 209 (1275)
Q Consensus 160 ~~~~~IllLDEPTSgL-Ds~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~ 209 (1275)
+...+++++||.-.=. +......+++.+... ...++.++++...+..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~-~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987-631663899548751001
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.06 E-value=0.12 Score=23.80 Aligned_cols=43 Identities=9% Similarity=0.216 Sum_probs=24.4
Q ss_pred HCCCEEEEECCCC-------CCCHHH-HHHHHHHHHHH---H-HCCCEEEEEECC
Q ss_conf 1996879949999-------999999-99999999998---6-389799999648
Q 000808 846 ANPSIIFMDEPTS-------GLDARA-AAIVMRTVRNT---V-DTGRTVVCTIHQ 888 (1275)
Q Consensus 846 ~~p~il~lDEpts-------gLD~~~-~~~i~~~l~~~---~-~~~~tvi~~~H~ 888 (1275)
+.|.|+|+||.-+ +.++.. .+.+-+.|.++ . ..+.-||.++..
T Consensus 181 ~~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 181 LQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp HHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 6265897410122212345678987413345156652035566788499983797
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.068 Score=25.46 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.76 E-value=0.12 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994773999996999968999998978
Q 000808 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 711 ~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
+-++.|.++-+.||+|+||||+.-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.1 Score=24.26 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999689999989789
Q 000808 718 LTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
++.++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.72 E-value=0.09 Score=24.70 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.69 E-value=0.17 Score=22.97 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 477399999699996899999897899
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
+|.=-+|++|.-.+|||||++.|.+..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997089999724886999999997041
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.092 Score=24.61 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989838999997898979829999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
+|.|.||+||||||++--++....
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 899805777478999999999987
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.50 E-value=0.1 Score=24.28 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHHHHHCC-CEEEEECCCCCCCH----HHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHH-HHHHHEEECCCEEEE
Q ss_conf 9999995199-68799499999999----9999999999998638-979999964889889985-205240005957999
Q 000808 839 TIAVELVANP-SIIFMDEPTSGLDA----RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFES-FDELFLMKRGGQEIY 911 (1275)
Q Consensus 839 ~ia~~l~~~p-~il~lDEptsgLD~----~~~~~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~-fd~~~~l~~~g~~~~ 911 (1275)
.+-.++...+ -|+|+||.-+=+.. .+...+-+.|+..-.+ ...+|.++. ++-|+. +.+---|.+-=+.+.
T Consensus 101 ~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT---~eey~~~~e~d~al~rrF~~I~ 177 (268)
T d1r6bx2 101 ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTT---YQEFSNIFEKDRALARRFQKID 177 (268)
T ss_dssp HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEEC---HHHHHCCCCCTTSSGGGEEEEE
T ss_pred HHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC---HHHHHHHHHHCHHHHHHHCCCC
T ss_conf 9999861267846884336988627777886411798764887479875999579---9999999861678886521003
Q ss_pred ECCCC
Q ss_conf 87998
Q 000808 912 VGPLG 916 (1275)
Q Consensus 912 ~g~~~ 916 (1275)
--+++
T Consensus 178 V~Eps 182 (268)
T d1r6bx2 178 ITEPS 182 (268)
T ss_dssp CCCCC
T ss_pred CCCCC
T ss_conf 68989
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=0.12 Score=23.86 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999996999968999998978999
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
-++.|-|.-|||||||++-+....+
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8899864888999999999985678
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.23 E-value=0.089 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|=|+-||||||+++.|+-.+.
T Consensus 5 IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988859999999999873
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.06 E-value=0.091 Score=24.65 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=21.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9898389999978989798299999
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDS 25 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~ 25 (1275)
+.++-|+-||||||+.+.|+-.+..
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899888699999999999971
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.91 E-value=0.12 Score=23.99 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.9
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 73999996999968999998
Q 000808 716 GVLTALMGVSGAGKTTLMDV 735 (1275)
Q Consensus 716 G~~~~i~G~sGsGKsTll~~ 735 (1275)
+.++.|.||+|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.89 E-value=0.19 Score=22.64 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994773999996999968999998978
Q 000808 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 711 ~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
|-++.|.++-+-||+|+||||+.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.57 E-value=0.12 Score=23.79 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898389999978989798299
Q 000808 1 MTLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~ 22 (1275)
+.+|.|+.||||||..+.|...
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799998899999999986
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.49 E-value=0.17 Score=22.96 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=20.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 47739999969999689999989789
Q 000808 714 RPGVLTALMGVSGAGKTTLMDVLAGR 739 (1275)
Q Consensus 714 ~~G~~~~i~G~sGsGKsTll~~l~g~ 739 (1275)
+|.....++||+|+|||.+.+.|+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.32 E-value=0.19 Score=22.63 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699996899999897899
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
...+|=|+-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.14 E-value=0.18 Score=22.75 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9477399999699996899999897899
Q 000808 713 FRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 713 i~~G~~~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
.+|+. +.++||+|+|||-|-+.|+...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 78753-2441899863789999998644
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.98 E-value=0.086 Score=24.80 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999996999968999998978999
Q 000808 717 VLTALMGVSGAGKTTLMDVLAGRKT 741 (1275)
Q Consensus 717 ~~~~i~G~sGsGKsTll~~l~g~~~ 741 (1275)
.-+.|.|++|+|||||.+.+++..+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7089988998529999999987379
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.88 E-value=0.12 Score=23.87 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCCEEEEEECCCCCC----CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCCEEEEC
Q ss_conf 497087872798560----46999999999999968329989999538991--------5894102488864
Q 000808 161 GPALALFMDEISTGL----DSSTTFQIVNSIRQNIHILNGTAVISLLQPAP--------ETYDLFDDIILLS 220 (1275)
Q Consensus 161 ~~~~IllLDEPTSgL----Ds~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~--------e~~~lfD~I~vL~ 220 (1275)
.++++++.|.-+.-. +..........+.+..+..+.+++++.++... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 312220020788998760572678999999999998639716884210255422246762335362999988
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=0.2 Score=22.57 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|.|||++...|+.++.
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67988898867799999999998
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.69 E-value=0.21 Score=22.41 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|..|+|||||++-+...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998889999988408
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.54 E-value=0.21 Score=22.43 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898389999978989798299
Q 000808 2 TLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~ 22 (1275)
.+++|.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.28 E-value=0.2 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+|=|+-|+||||+++.|+..+.
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989867789999999999817
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.16 E-value=0.21 Score=22.39 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 773999996999968999998978
Q 000808 715 PGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 715 ~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
|.=-+|++|.-++|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.78 E-value=0.27 Score=21.69 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898389999978989798299999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~ 25 (1275)
..|=|+-|+||||+++.|+..+..
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999888667899999999998656
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.70 E-value=0.15 Score=23.21 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 2211213899947739999969999689999
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLM 733 (1275)
Q Consensus 703 ~~il~~vs~~i~~G~~~~i~G~sGsGKsTll 733 (1275)
+.++++. .|. +.|.|+.||||||.+
T Consensus 17 ~~~v~~~-----~g~-~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EGP-LLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SSC-EEEEECTTSCHHHHH
T ss_pred HHHHHCC-----CCC-EEEEECCCCCHHHHH
T ss_conf 9998299-----999-899952986689999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.69 E-value=0.18 Score=22.74 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.58 E-value=0.21 Score=22.38 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699996899999897899
Q 000808 719 TALMGVSGAGKTTLMDVLAGRK 740 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll~~l~g~~ 740 (1275)
..|+|++|.|||++..-|+.+.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 3998358754479999999999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.17 E-value=0.19 Score=22.62 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHC--CCEEEEECCCCCCCH---HHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEE
Q ss_conf 999999999519--968799499999999---9999999999998638-9799999648898899852052400059579
Q 000808 836 KRLTIAVELVAN--PSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDELFLMKRGGQE 909 (1275)
Q Consensus 836 kr~~ia~~l~~~--p~il~lDEptsgLD~---~~~~~i~~~l~~~~~~-~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~ 909 (1275)
|...|-.++... +-|||+||.-+=++. ......-+.|+..-.+ ...+|.++. ++-|+.|.+=--|.+-=+.
T Consensus 102 r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT---~~ey~~~e~d~al~rrF~~ 178 (387)
T d1qvra2 102 RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT---LDEYREIEKDPALERRFQP 178 (387)
T ss_dssp HHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEEC---HHHHHHHTTCTTTCSCCCC
T ss_pred HHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC---HHHHHHHCCCHHHHHHCCC
T ss_conf 9999999850589966987240888842777877413899999997378851666368---9999876336799982461
Q ss_pred EEECCCCC
Q ss_conf 99879986
Q 000808 910 IYVGPLGR 917 (1275)
Q Consensus 910 ~~~g~~~~ 917 (1275)
|...+++.
T Consensus 179 v~v~ep~~ 186 (387)
T d1qvra2 179 VYVDEPTV 186 (387)
T ss_dssp EEECCCCH
T ss_pred CCCCCCCH
T ss_conf 12799867
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.92 E-value=0.23 Score=22.10 Aligned_cols=23 Identities=52% Similarity=0.738 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+.+||+|+|||-|.+.|+...+
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 24418998637899999986443
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.64 E-value=0.26 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999968999998978
Q 000808 718 LTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 718 ~~~i~G~sGsGKsTll~~l~g 738 (1275)
++.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=85.62 E-value=0.18 Score=22.86 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999969999689999
Q 000808 719 TALMGVSGAGKTTLM 733 (1275)
Q Consensus 719 ~~i~G~sGsGKsTll 733 (1275)
+.|.|+.||||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEEECCCCHHHHH
T ss_conf 899962884389999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.56 E-value=0.27 Score=21.71 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=41.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 96879949999999999999999999986389799999648898899852052400059579998799865027998874
Q 000808 848 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYFE 927 (1275)
Q Consensus 848 p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~~~~~~~~~~yf~ 927 (1275)
.+++++||.=. |+..+...+.+.+.+.. .+..+|+++++++. +. .. +.++ .+.+.+.+... .+...+..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~-i~---~~--i~SR-c~~i~~~~~~~--~~i~~~l~ 184 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK-LP---VT--ILSR-CLQFHLKALDV--EQIRHQLE 184 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG-SC---HH--HHTT-SEEEECCCCCH--HHHHHHHH
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCC-CCEEEEEECCCCCC-CC---HH--HHHH-HCCCCCCCCCH--HHHHHHHH
T ss_conf 87999978110-89999999999985689-88699997388563-67---65--7612-10222246767--87666887
Q ss_pred C
Q ss_conf 1
Q 000808 928 G 928 (1275)
Q Consensus 928 ~ 928 (1275)
.
T Consensus 185 ~ 185 (239)
T d1njfa_ 185 H 185 (239)
T ss_dssp H
T ss_pred H
T ss_conf 8
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.28 E-value=0.2 Score=22.50 Aligned_cols=58 Identities=16% Similarity=0.363 Sum_probs=34.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 43468988877988989999999995199687994999999999999999999998638979999964
Q 000808 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887 (1275)
Q Consensus 820 ~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H 887 (1275)
..+..||...+++.-..-+.+ .+-.+++. .+..|+-+.|...+..+.+ .+..+++.+-
T Consensus 99 nliDtPGh~dF~~ev~~al~~-----~D~allVV-da~eGv~~qT~~~~~~a~~----~~~p~i~viN 156 (341)
T d1n0ua2 99 NLIDSPGHVDFSSEVTAALRV-----TDGALVVV-DTIEGVCVQTETVLRQALG----ERIKPVVVIN 156 (341)
T ss_dssp EEECCCCCCSSCHHHHHHHHT-----CSEEEEEE-ETTTBSCHHHHHHHHHHHH----TTCEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHH-----CCCEEEEE-ECCCCCCHHHHHHHHHHHH----CCCCEEEEEE
T ss_conf 997378738899999988752-----37249998-6566820469999999987----6998699987
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.10 E-value=0.24 Score=21.95 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983899999789897982999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKL 23 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~ 23 (1275)
.+|.|++|+|||||+..|+...
T Consensus 46 ~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 46 GLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 5686799988789999999977
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.73 E-value=0.27 Score=21.71 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89838999997898979829999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~ 24 (1275)
.+++||+|+|||.+.+.|+-.+.
T Consensus 56 ~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 56 FLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHC
T ss_conf 99978886248999999999835
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.63 E-value=0.26 Score=21.79 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=15.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898389999978989798299
Q 000808 1 MTLLLGPPCSGKTTLLLALAGK 22 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~ 22 (1275)
+|.+.||+|+||||++-.++..
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 6999648874889999999998
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.27 E-value=0.44 Score=20.32 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=39.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99687994999999999999999999998638979999964889889985205240005957999879986502799887
Q 000808 847 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGRHSCHLIRYF 926 (1275)
Q Consensus 847 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~~~g~~~~~g~~~~~~~~~~~yf 926 (1275)
+.+++++||+- .|...++..+.+++.+-. .+..+|+++++++. +. .. +.++ =..+.+-++.. ++...+.
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~-ll---~t--I~SR-c~~i~~~~~~~--~~~~~~L 176 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPP-AETWFFLATREPER-LL---AT--LRSR-CRLHYLAPPPE--QYAVTWL 176 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGG-SC---HH--HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CCCEEEECHHH-HHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHH-HH---HH--HCCE-EEEEECCCCCH--HHHHHHH
T ss_conf 64047731344-200001499999998501-11104553068655-10---32--0021-57882689999--9999999
Q ss_pred HC
Q ss_conf 41
Q 000808 927 EG 928 (1275)
Q Consensus 927 ~~ 928 (1275)
..
T Consensus 177 ~~ 178 (207)
T d1a5ta2 177 SR 178 (207)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.97 E-value=0.24 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=24.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89994773999996999968999998978
Q 000808 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1275)
Q Consensus 710 s~~i~~G~~~~i~G~sGsGKsTll~~l~g 738 (1275)
-..+..|+..+|.|++|.|||+|+.-++.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 46766787787656888885899999997
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.67 E-value=0.32 Score=21.25 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 898389999978989
Q 000808 2 TLLLGPPCSGKTTLL 16 (1275)
Q Consensus 2 taIlGpsGSGKSTLL 16 (1275)
++..|-||+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (313)
T d2olra1 17 AVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCCCCCE
T ss_conf 999704779856023
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.05 E-value=0.26 Score=21.73 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898389999978989798299999
Q 000808 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1275)
Q Consensus 2 taIlGpsGSGKSTLL~~LaG~~~~ 25 (1275)
.+|=|+-||||||+++.|+-.+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.93 E-value=0.22 Score=22.26 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=24.8
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 112138999477399999699996899999897
Q 000808 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 737 (1275)
Q Consensus 705 il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~ 737 (1275)
+++.+ ..+..|+..+|.|++|+|||+|+..+.
T Consensus 57 ~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 57 AIDAM-IPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred EEECC-CCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 77501-454677667600677888579999977
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.79 E-value=0.33 Score=21.15 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=9.0
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 898389999978989
Q 000808 2 TLLLGPPCSGKTTLL 16 (1275)
Q Consensus 2 taIlGpsGSGKSTLL 16 (1275)
++..|.||+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEECCCCCCCCCCC
T ss_conf 999736879814221
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.87 E-value=0.47 Score=20.16 Aligned_cols=15 Identities=47% Similarity=0.649 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 898389999978989
Q 000808 2 TLLLGPPCSGKTTLL 16 (1275)
Q Consensus 2 taIlGpsGSGKSTLL 16 (1275)
++..|-||+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCCCCCE
T ss_conf 999736778812051
|