Citrus Sinensis ID: 000809

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270---
MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE
cccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccEEEcccccEEEEcccEEEEEEcccccccEEEEEEEEEEccEEEEEEEccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEEccccEEEEEEccccccccccccccccccccEEEEEEcccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccHHHHHHHHHHcccHHHHHHcccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccccccHHHHHHHHHccccccccHHHHHHHcccccccc
cccccccccccccccEEEEcccccccccccEEEEccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHccEEEEccEEEEcccccHHHHHHccccccEEEEcccccccEEEEcccEEEEEEEcEEEEEEEEEEEccEEEEEEEEEEcccEEEEEEccccccccccccccccccEEEccccEEEEcccccccccccccccEEEEEEEccccEEEEEEccccccHHHHHHHcccccccEEEEEEEcccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcEEEEccccHHHHHHHcccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccEEccccEEEccccccccHHHHccHHHHHHHHccccHHHHHEEEEHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEEccccccHHHHHHHHHHcccccEEEEEEEEEEEEcccccc
maedglrigglsSGLALIlngddgkdnssksrfvsycddfghqSVEQTLEYIfglpnkslgpltcpvdnnlIRSIIKNdfskcylnsdavvanrdgigilengsgphivgleessicgdvriaKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSgvqqlgwatlscpftdhkgvgdaddsyafdgrrvkkwnkeaepygqswvaGDIIGCcidldsdeisfyrNGVSLGVAFSgirkmgpgfgyypavslsqgercvlnfgarpfkypincylplqesppvnVFATQLLQCLSRLLgmdkaersSVEKSRRLKRFVSLEKifnpvshgICEEFFSLLEADARIIEYVGWGILLSFMMEVFglqvphdysslDRVVDVFLQFQGSRSIFEHIIQALSCGCKtasmvltecpysgsypylaLACHILRREELMVLWWNSLDFEFIFEGflsrknpnrqdlqcmipsvwwpgscedisyessMMLTTTALSEAVSKIEEKHRELCLLVIQfippisppqfpgsvFRTFIQNILLknrgadrslpppgvssnsVLVSLYTVILHFLSEgfaigdtcswlkrsekngcnvgflhrggqqsfpiglflkndLLRADISRLggsfshllkshpvddqdaEVIRweegymddeetrvchlsehkpcccssydaefvrslkypvrnatkgsrghcssvpersahvaaecstgslndeiadkpstsdqsesdfgyhpvrHTMTVLRESNMSAATLKEEELLDALLLLYHIglapnfkqasyymshqsqSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVlrksdppfvpstifIKQGLASFVTFVVThfndprissaDLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALIsafdnrswipvTNILLRLCkghgfgsskhgessssSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCtheipqaflsgtdTNLRRLTELIVFILNHvtsaadaefFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLdasaesecgvqndvvgvfssmdcpdtihcgFQYLLEYnwagsfrgdtylsklgQLECFLSLVLCHIEAQEmertrcgretdaddgmccicyaseadaqfvpcshrschgcisrhlLNCLRCFFCNATVLEVVKVDEKIE
MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWnkeaepygqswvAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGmdkaerssveksrrlkrfvslekifnpvshGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSfshllkshpvddqdaEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGfgsskhgesssSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIpqaflsgtdtNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE
MAEDglrigglssglalilngDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLViqfippisppqfpGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSaatlkeeelldallllYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCkghgfgsskhgesssssVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE
*************GLALIL************RFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGM*************LKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNR*************NSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVR*******************************************************MTVL********TLKEEELLDALLLLYHIGLAPNFKQASYYMS********************************NNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGF************VIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKV*****
******R***LSSGLALIL****************YCDDFGHQSVEQTLEYIFG******************RSIIKNDFSKCYLNSDAVVA*********NGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSR********************FVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGS**********MLTTTALSEAVSKIEEKHRELCLLVIQFIPPISP**FPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQ******************************SSYDAEFVRSLKYPVRNATKG***************************************************************LKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLL***********************NNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAA**S******RLPKALISAFDNRSWIPVTNILLRLCKGHGF***************QRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDA***********VVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVL**********************MCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDE***
MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMD**********RRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRN**********************CSTGSLNDEIAD**********DFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHG*************VIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE
*******IGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYP************************************************FGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCG**TD*DDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVD****
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MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRxxxxxxxxxxxxxxxxxxxxxVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1273 2.2.26 [Sep-21-2011]
Q9SIZ81280 E3 ubiquitin-protein liga yes no 0.989 0.983 0.705 0.0
Q5XPI41314 E3 ubiquitin-protein liga yes no 0.845 0.818 0.261 7e-95
D3ZXK71318 E3 ubiquitin-protein liga yes no 0.844 0.815 0.256 3e-94
Q5XPI31314 E3 ubiquitin-protein liga yes no 0.848 0.821 0.257 7e-94
Q8BVR6576 RING finger and SPRY doma no no 0.106 0.236 0.415 1e-21
Q5R881576 RING finger and SPRY doma no no 0.106 0.236 0.408 2e-21
Q96DX4576 RING finger and SPRY doma no no 0.106 0.236 0.408 3e-21
Q95LP3576 RING finger and SPRY doma N/A no 0.106 0.236 0.408 4e-21
E9PZQ0 5035 Ryanodine receptor 1 OS=M no no 0.098 0.025 0.328 1e-13
P21817 5038 Ryanodine receptor 1 OS=H no no 0.109 0.027 0.303 2e-13
>sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2 SV=2 Back     alignment and function desciption
 Score = 1861 bits (4821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 897/1271 (70%), Positives = 1061/1271 (83%), Gaps = 12/1271 (0%)

Query: 1    MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSL 60
            MAED LR+G +SSGLA++LNG+D K+NSSK+R V + D  GH+ +E+T+E+IFGL  KS+
Sbjct: 1    MAEDSLRVGMISSGLAVLLNGEDAKENSSKARIVPHFDYSGHRPLERTIEFIFGLAEKSV 60

Query: 61   GPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDV 120
            GPL   VD++LIR++IKN FSK + + D  V+ R+GI ++ +G GP IVGLEE SICGD+
Sbjct: 61   GPLDGQVDSSLIRAVIKNQFSKLHGDLDVSVSQREGISVVHHGVGPPIVGLEEFSICGDI 120

Query: 121  RIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGD 180
            RI K PL++ESLA+FSSARAN C+WKGKWMYEV LETSG+QQLGWATL+CPFTD KGVGD
Sbjct: 121  RIVKPPLVLESLALFSSARANACIWKGKWMYEVALETSGIQQLGWATLACPFTDQKGVGD 180

Query: 181  ADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIR 240
            ADDSYAFDGRRV KWNKEAEPYGQSWVAGD+IGCCIDL+ DEI FYRNGVSLG AF+GIR
Sbjct: 181  ADDSYAFDGRRVSKWNKEAEPYGQSWVAGDVIGCCIDLNCDEIYFYRNGVSLGAAFTGIR 240

Query: 241  KMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLL 300
            K+GPGFGYYPA+SLSQGERC LNFGA PFKYP++ + PLQE+P    FAT+LL+C SRLL
Sbjct: 241  KLGPGFGYYPAISLSQGERCELNFGAYPFKYPVDGFQPLQEAPTRFSFATELLRCFSRLL 300

Query: 301  GMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFM 360
              D+ +RS  +   RL+RF S+E++F PVS  IC+EFF +LE D  + EY+G G  LSF+
Sbjct: 301  --DRPDRSLADTLSRLRRFASVEELFCPVSSAICDEFFYILEQDPLLAEYLGRGAFLSFL 358

Query: 361  MEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYP 420
            +E F  Q PHD SSLD+V+DVFL+F  S  IFEH++ AL+CGCKTA+++LTECPYSG YP
Sbjct: 359  LETFRTQAPHDSSSLDKVLDVFLEFPQSHLIFEHVVNALACGCKTATLILTECPYSGPYP 418

Query: 421  YLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISY 480
            YLALACH+ +REELMV WW SL FEF+FEGFLS ++ N+ DLQ ++P VWWPGS EDISY
Sbjct: 419  YLALACHLFKREELMVQWWRSLHFEFLFEGFLSCRSSNKHDLQHLMPVVWWPGSSEDISY 478

Query: 481  ESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGA 540
            ESSM  T +ALSEA++KIEEK R LCLLVIQFIPP+SPPQ PGS FR F+QN+LLKNRGA
Sbjct: 479  ESSMGFTISALSEAINKIEEKQRNLCLLVIQFIPPVSPPQLPGSAFRGFLQNLLLKNRGA 538

Query: 541  DRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSF 600
            DR+L P GV+ NSVLVSL++VILHFLSEGFA+      LK SE    NVGFLHRGGQQ F
Sbjct: 539  DRTLAPSGVTRNSVLVSLFSVILHFLSEGFAM------LKSSEAVHHNVGFLHRGGQQKF 592

Query: 601  PIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHK 660
            P+ LFLKND  RADI+RLGG FSH+ KS+P DDQ+ E++RWEEG MDDE+ RV H +E K
Sbjct: 593  PLSLFLKNDPHRADITRLGGLFSHISKSYPTDDQEEEIMRWEEGCMDDEQNRVTHATEQK 652

Query: 661  PCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTS 720
            PCCC +YD +  +SLK   +N  + SRG CSS+PERS+HVAAECS GS ++EI DKPSTS
Sbjct: 653  PCCCLAYDTDLTKSLKDRGKNTAQSSRGRCSSIPERSSHVAAECSAGSFSEEIDDKPSTS 712

Query: 721  DQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQ 780
            +QS+ DFGY PVR   T L+ES +S+A L EEELLDALLLLYHI +APNFKQASYYMSHQ
Sbjct: 713  NQSDPDFGYRPVRFMRTALQESRISSAILSEEELLDALLLLYHIAVAPNFKQASYYMSHQ 772

Query: 781  SQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGM 840
            SQSISLLEETDKQIRERA  +Q+KRLKEARNNY+E+V+DCVRH AW+RISLFSRWKQRGM
Sbjct: 773  SQSISLLEETDKQIRERASCDQIKRLKEARNNYKEDVMDCVRHSAWFRISLFSRWKQRGM 832

Query: 841  YATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASF 900
            YA C+WVVQLLLVLSK+DSVF+YIPEFYLE+LVDCFHVLRKSDPPFVPST FIKQGL+SF
Sbjct: 833  YALCMWVVQLLLVLSKMDSVFVYIPEFYLESLVDCFHVLRKSDPPFVPSTTFIKQGLSSF 892

Query: 901  VTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNR 960
            +TFVVTHFND RIS+ DL+DLLLQSISVLVQYK+YL AFE+NEAAT  +P AL++AFDNR
Sbjct: 893  ITFVVTHFNDSRISNTDLKDLLLQSISVLVQYKEYLEAFENNEAATRHMPAALLAAFDNR 952

Query: 961  SWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLS 1020
            SWIPVTNI LRLCKG GF S K+GESS SS +FQ LLR+ACIND  L STFLNRLFNTLS
Sbjct: 953  SWIPVTNIFLRLCKGSGFSSLKNGESSFSSTVFQALLRDACINDGELLSTFLNRLFNTLS 1012

Query: 1021 WTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNL 1080
            WT+TEFS+S+REMQEKYQV EFQQ+KCCVIF+LS NL RVLEFCT+ +PQAFL+GTDTNL
Sbjct: 1013 WTITEFSVSVREMQEKYQVMEFQQRKCCVIFELSSNLARVLEFCTYAMPQAFLAGTDTNL 1072

Query: 1081 RRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAES 1140
            RRLTELI+FILNH+TSA D EFFDLSLRR GQ  EKV+RG++LAPLVGIILNLL+AS +S
Sbjct: 1073 RRLTELILFILNHMTSAVDDEFFDLSLRRQGQPSEKVSRGILLAPLVGIILNLLEASEDS 1132

Query: 1141 ECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRG-DTYLSKLGQLECFLSLVLCH 1199
            +   Q+DV+G+F+SMDCPDT++ GFQYLLEYNW G   G D Y+ KLGQLE FLS ++  
Sbjct: 1133 KPKQQHDVIGLFASMDCPDTVYYGFQYLLEYNWDGCVSGDDAYVKKLGQLENFLSHLINR 1192

Query: 1200 IEAQEMERTR---CGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCF 1256
              +QE ER         TD +D  CCICYA EA+A   PCSHRSC+GCI+RHLLNC RCF
Sbjct: 1193 ASSQEPERKEESFNKDTTDIEDNTCCICYAGEANAMIAPCSHRSCYGCITRHLLNCQRCF 1252

Query: 1257 FCNATVLEVVK 1267
            FCNATV++V++
Sbjct: 1253 FCNATVIDVIR 1263
E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of KRP1 and KRP2.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1 SV=1 Back     alignment and function description
>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus GN=Rnf123 PE=1 SV=1 Back     alignment and function description
>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus musculus GN=Rnf123 PE=2 SV=1 Back     alignment and function description
>sp|Q8BVR6|RSPRY_MOUSE RING finger and SPRY domain-containing protein 1 OS=Mus musculus GN=Rspry1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R881|RSPRY_PONAB RING finger and SPRY domain-containing protein 1 OS=Pongo abelii GN=RSPRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q96DX4|RSPRY_HUMAN RING finger and SPRY domain-containing protein 1 OS=Homo sapiens GN=RSPRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q95LP3|RSPRY_MACFA RING finger and SPRY domain-containing protein 1 OS=Macaca fascicularis GN=RSPRY1 PE=2 SV=1 Back     alignment and function description
>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1 Back     alignment and function description
>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1273
2555755431348 protein binding protein, putative [Ricin 1.0 0.944 0.779 0.0
3594807151276 PREDICTED: E3 ubiquitin-protein ligase R 0.997 0.995 0.776 0.0
2960824941259 unnamed protein product [Vitis vinifera] 0.984 0.995 0.767 0.0
3565162831269 PREDICTED: E3 ubiquitin-protein ligase R 0.992 0.996 0.75 0.0
3565090461269 PREDICTED: E3 ubiquitin-protein ligase R 0.992 0.996 0.752 0.0
3574643851301 RING finger and SPRY domain-containing p 0.990 0.969 0.705 0.0
4494484061270 PREDICTED: E3 ubiquitin-protein ligase R 0.991 0.993 0.719 0.0
306815901280 ubiquitination-promoting complex protein 0.989 0.983 0.705 0.0
3341843611283 ubiquitination-promoting complex protein 0.989 0.981 0.704 0.0
2978250611276 zinc finger family protein [Arabidopsis 0.992 0.989 0.699 0.0
>gi|255575543|ref|XP_002528672.1| protein binding protein, putative [Ricinus communis] gi|223531895|gb|EEF33711.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 2043 bits (5294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 996/1278 (77%), Positives = 1111/1278 (86%), Gaps = 5/1278 (0%)

Query: 1    MAEDGLRIGG-LSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKS 59
            MA+DG+R+GG +S+GLA+ILNG+DGK++SSK+R VSYCDDFG+Q VE+ LEY+FGLPNK 
Sbjct: 1    MADDGIRVGGGISAGLAVILNGEDGKESSSKTRLVSYCDDFGNQPVERALEYVFGLPNKL 60

Query: 60   LGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGD 119
            L PLT  VDNNL+RSIIKN+F K ++ SD + ++RDGI I +NG  PH VGLEE SICGD
Sbjct: 61   LSPLTASVDNNLVRSIIKNEFQKVHVKSDTLGSDRDGICIFDNGCRPHKVGLEELSICGD 120

Query: 120  VRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVG 179
            +RI K P ++ESLAMFSS RANVCVW+GKWMYEV L TSGVQQLGWAT+SCPFTDHKGVG
Sbjct: 121  IRIIKPPFVLESLAMFSSTRANVCVWEGKWMYEVILATSGVQQLGWATVSCPFTDHKGVG 180

Query: 180  DADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGI 239
            DADDSYAFDG+RV+KWNK+AEPYGQSWV GD+IGCCIDLD D+I FYRNGVSLGVAF GI
Sbjct: 181  DADDSYAFDGKRVRKWNKDAEPYGQSWVVGDVIGCCIDLDQDKILFYRNGVSLGVAFCGI 240

Query: 240  RKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRL 299
            RKMGPGFGY+PA+SLSQGERC LNFG RPFKYPI  +LPLQE P VN+ AT+LL+ LSRL
Sbjct: 241  RKMGPGFGYHPAISLSQGERCELNFGGRPFKYPIQGFLPLQEPPAVNLLATELLRALSRL 300

Query: 300  ---LGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGIL 356
                 M++A+ S V K RRLKRFVSLE++F PV  GICEE F LLE+DA   EYV WG L
Sbjct: 301  SEMYCMERADSSIVGKFRRLKRFVSLEELFYPVCRGICEELFFLLESDAGRTEYVAWGPL 360

Query: 357  LSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYS 416
            LSFMME+F +Q PH YSSLDR +D+ L+FQ S  +FE +I ALSCGCKT S+VLTECPYS
Sbjct: 361  LSFMMEIFRVQPPHGYSSLDRFIDILLEFQESHLMFECVINALSCGCKTTSLVLTECPYS 420

Query: 417  GSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCE 476
            GSY YLALAC+ILRREELM LWW   DFEF+FEGFLS+K+ N+QDL C++PSVWWPGSCE
Sbjct: 421  GSYTYLALACYILRREELMGLWWKLPDFEFLFEGFLSQKSLNKQDLHCLMPSVWWPGSCE 480

Query: 477  DISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLK 536
            DISYESSM+LTTTALSEAVSKIEEKHR+LCLLVIQF+PP +PPQ PGSVFRTF+QN+LLK
Sbjct: 481  DISYESSMLLTTTALSEAVSKIEEKHRDLCLLVIQFVPPTTPPQLPGSVFRTFLQNLLLK 540

Query: 537  NRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGG 596
             RGADR++PPPGVSSNSVLVSLYTVILHFLSEGFA+ D C WLK  E N  +VGFLHRGG
Sbjct: 541  KRGADRNVPPPGVSSNSVLVSLYTVILHFLSEGFAMRDICGWLKSCETNNYDVGFLHRGG 600

Query: 597  QQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHL 656
            +QSFP+ LFLKND  R DISRLGGSFSHL KSHPV DQ+ E +RWEEG MDDEE RV H 
Sbjct: 601  EQSFPVDLFLKNDSYRTDISRLGGSFSHLSKSHPVYDQEVEAVRWEEGCMDDEEIRVTHK 660

Query: 657  SEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADK 716
            +  KPCCCSSYD E  +  K+  R  +KGSR HC+ +PERS HVAAECS GSLNDEIADK
Sbjct: 661  TIQKPCCCSSYDVELSKMSKHQTRYISKGSRVHCTPIPERSTHVAAECSAGSLNDEIADK 720

Query: 717  PSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYY 776
            PSTSDQSES+FGYHP+R    V RESNMS+ TL+EEELLD LLLLYHIG+APNFKQASYY
Sbjct: 721  PSTSDQSESEFGYHPMRDMRIVPRESNMSSDTLREEELLDTLLLLYHIGVAPNFKQASYY 780

Query: 777  MSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWK 836
            MSHQSQSISLL+ETDKQIRER CSEQL+RLKE RN+YREEVIDCVRHCAWYRISLFSRWK
Sbjct: 781  MSHQSQSISLLDETDKQIRERGCSEQLRRLKEVRNDYREEVIDCVRHCAWYRISLFSRWK 840

Query: 837  QRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQG 896
            QRGMYATC+W+VQL+LVLSKVDS+FIYIPEFYLE LVDCFHVLRKSDPPFVP  IFIKQG
Sbjct: 841  QRGMYATCMWIVQLVLVLSKVDSLFIYIPEFYLETLVDCFHVLRKSDPPFVPPAIFIKQG 900

Query: 897  LASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISA 956
            LASFVTFVV+HFNDPRI SADLRDLLLQSISVLVQYK+YLAAFESNEAA  R+PKAL+SA
Sbjct: 901  LASFVTFVVSHFNDPRILSADLRDLLLQSISVLVQYKEYLAAFESNEAAIQRMPKALLSA 960

Query: 957  FDNRSWIPVTNILLRLCKGHGFG-SSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRL 1015
            FDNRSWIPVTNILLRLCKG  FG S     SSSSSV+FQ LLREACIND  LFS FLNRL
Sbjct: 961  FDNRSWIPVTNILLRLCKGSRFGSSKHGESSSSSSVVFQNLLREACINDGELFSAFLNRL 1020

Query: 1016 FNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSG 1075
            FNTLSWTMTEFS+SIREMQEKYQV EFQQ+KCCVIFDLSCNL R+LEFCT EIPQAFLSG
Sbjct: 1021 FNTLSWTMTEFSVSIREMQEKYQVLEFQQRKCCVIFDLSCNLARLLEFCTREIPQAFLSG 1080

Query: 1076 TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLD 1135
             DTNLRRLTELIVFIL+H+TSAAD+EFFDLSLRRHGQSLEKVNRGMILAPLVG+ILNLLD
Sbjct: 1081 ADTNLRRLTELIVFILSHITSAADSEFFDLSLRRHGQSLEKVNRGMILAPLVGVILNLLD 1140

Query: 1136 ASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSL 1195
            AS E ECG QNDVVGVF+SMDCPDT+HCGFQYLLEYNW  SFRG+ YL KL QLE FLSL
Sbjct: 1141 ASVEMECGEQNDVVGVFASMDCPDTMHCGFQYLLEYNWVRSFRGEAYLGKLVQLENFLSL 1200

Query: 1196 VLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRC 1255
            ++  IE ++ E  RCG ETD DD +CCICY  EADAQF PCSHRSC+GCI+RHLLNC RC
Sbjct: 1201 LVSRIELEQTEMMRCGGETDGDDSICCICYTCEADAQFAPCSHRSCYGCITRHLLNCHRC 1260

Query: 1256 FFCNATVLEVVKVDEKIE 1273
            FFCNATVLEV+K+ E +E
Sbjct: 1261 FFCNATVLEVIKLREPME 1278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480715|ref|XP_002276278.2| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082494|emb|CBI21499.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516283|ref|XP_003526825.1| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Glycine max] Back     alignment and taxonomy information
>gi|356509046|ref|XP_003523263.1| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Glycine max] Back     alignment and taxonomy information
>gi|357464385|ref|XP_003602474.1| RING finger and SPRY domain-containing protein [Medicago truncatula] gi|355491522|gb|AES72725.1| RING finger and SPRY domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449448406|ref|XP_004141957.1| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30681590|ref|NP_850020.1| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] gi|300681232|sp|Q9SIZ8.2|RKP_ARATH RecName: Full=E3 ubiquitin-protein ligase RKP; Short=AtKPC1; AltName: Full=Protein RELATED TO KPC1 gi|330252157|gb|AEC07251.1| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334184361|ref|NP_001189573.1| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] gi|330252158|gb|AEC07252.1| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825061|ref|XP_002880413.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297326252|gb|EFH56672.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SIZ8RKP_ARATH6, ., 3, ., 2, ., -0.70570.98900.9835yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1273
cd12882128 cd12882, SPRY_RNF123, SPRY domain at N-terminus of 5e-80
cd11709118 cd11709, SPRY, SPRY domain 1e-36
smart00449122 smart00449, SPRY, Domain in SPla and the RYanodine 2e-33
pfam00622125 pfam00622, SPRY, SPRY domain 6e-32
cd12878133 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryano 2e-28
cd12872149 cd12872, SPRY_Ash2, SPRY domain in Ash2 5e-26
cd12873155 cd12873, SPRY_DDX1, SPRY domain associated with DE 9e-26
cd12883121 cd12883, SPRY_RING, SPRY domain at N-terminus of R 2e-25
cd12884176 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous 4e-22
cd12885132 cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi 1e-16
cd12877151 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryano 4e-14
cd12886128 cd12886, SPRY_like, SPRY domain-like in bacteria 1e-13
cd12909153 cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin 2e-13
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 8e-07
cd12876187 cd12876, SPRY_SOCS3, SPRY domain in the suppressor 2e-06
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 9e-06
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 1e-04
cd12906174 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppre 0.001
pfam10408625 pfam10408, Ufd2P_core, Ubiquitin elongating factor 0.004
cd0016245 cd00162, RING, RING-finger (Really Interesting New 0.004
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger protein 123 Back     alignment and domain information 
 Score =  257 bits (660), Expect = 5e-80
 Identities = 87/129 (67%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 137 SARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWN 196
           S RAN CV+KGKWMYEVTL T G+ Q+GWAT+SC FT  +GVGD  DSYA+DG RV+KWN
Sbjct: 1   SIRANACVYKGKWMYEVTLGTKGIMQIGWATISCRFTQEEGVGDTPDSYAYDGNRVRKWN 60

Query: 197 KEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQ 256
              + YG+ WVAGD+IGCCIDLD   ISFYRNG SLGVAF  +R+ GPG  Y+PAVSLS 
Sbjct: 61  VSTQKYGEPWVAGDVIGCCIDLDEGTISFYRNGRSLGVAFDNVRR-GPGLAYFPAVSLSF 119

Query: 257 GERCVLNFG 265
           GE   LNFG
Sbjct: 120 GESVELNFG 128

This SPRY domain is found at the N-terminus of RING finger protein 123 domain (also known as E3 ubiquitin-protein ligase RNF123). The ring finger domain motif is present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. RNF123 displays E3 ubiquitin ligase activity toward the cyclin-dependent kinase inhibitor p27 (Kip1). Length = 128
>gnl|CDD|240451 cd11709, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor (RyR) Back     alignment and domain information
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2 Back     alignment and domain information
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1 Back     alignment and domain information
>gnl|CDD|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain Back     alignment and domain information
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 Back     alignment and domain information
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3 Back     alignment and domain information
>gnl|CDD|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor (RyR) Back     alignment and domain information
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria Back     alignment and domain information
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10 Back     alignment and domain information
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4) Back     alignment and domain information
>gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1273
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 100.0
COG5113929 UFD2 Ubiquitin fusion degradation protein 2 [Postt 100.0
PF10408629 Ufd2P_core: Ubiquitin elongating factor core; Inte 100.0
KOG2042943 consensus Ubiquitin fusion degradation protein-2 [ 100.0
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.96
KOG2626544 consensus Histone H3 (Lys4) methyltransferase comp 99.94
smart00449122 SPRY Domain in SPla and the RYanodine Receptor. Do 99.85
PF00622124 SPRY: SPRY domain; InterPro: IPR003877 The SPRY do 99.84
KOG4030197 consensus Uncharacterized conserved protein, conta 99.68
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 99.65
KOG2242558 consensus Scaffold/matrix specific factor hnRNP-U/ 99.56
KOG3953242 consensus SOCS box protein SSB-1, contains SPRY do 99.47
KOG4367699 consensus Predicted Zn-finger protein [Function un 99.44
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 99.26
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.99
PLN03208 193 E3 ubiquitin-protein ligase RMA2; Provisional 98.89
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 98.86
smart0050463 Ubox Modified RING finger domain. Modified RING fi 98.8
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.7
KOG0823 230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.69
KOG1477469 consensus SPRY domain-containing proteins [General 98.68
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.63
PHA02929238 N1R/p28-like protein; Provisional 98.57
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 98.52
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 98.44
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 98.41
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 98.39
PHA02926242 zinc finger-like protein; Provisional 98.23
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.2
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.19
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.11
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 98.1
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 98.07
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 98.04
PF1463444 zf-RING_5: zinc-RING finger domain 98.02
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.0
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.98
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 97.95
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.89
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.86
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.86
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 97.86
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 97.72
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 97.68
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 97.56
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 97.55
KOG1477469 consensus SPRY domain-containing proteins [General 97.55
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 97.47
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.45
KOG1785 563 consensus Tyrosine kinase negative regulator CBL [ 97.36
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 97.33
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 97.29
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 97.22
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 97.17
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 96.93
KOG2660 331 consensus Locus-specific chromosome binding protei 96.87
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.8
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 96.68
COG5222427 Uncharacterized conserved protein, contains RING Z 96.5
KOG0297 391 consensus TNF receptor-associated factor [Signal t 96.16
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 96.13
COG5236 493 Uncharacterized conserved protein, contains RING Z 96.01
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 95.9
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 95.71
COG5152259 Uncharacterized conserved protein, contains RING a 95.38
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 95.19
PF04641260 Rtf2: Rtf2 RING-finger 95.03
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 94.82
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 94.56
KOG2242558 consensus Scaffold/matrix specific factor hnRNP-U/ 94.54
KOG1002 791 consensus Nucleotide excision repair protein RAD16 94.21
KOG3039303 consensus Uncharacterized conserved protein [Funct 94.1
KOG0825 1134 consensus PHD Zn-finger protein [General function 93.96
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 93.92
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 93.43
KOG1001 674 consensus Helicase-like transcription factor HLTF/ 93.36
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 92.61
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 92.16
COG52191525 Uncharacterized conserved protein, contains RING Z 92.08
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 91.76
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 91.36
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 90.56
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 90.38
KOG2932 389 consensus E3 ubiquitin ligase involved in ubiquiti 89.98
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 89.97
COG5175 480 MOT2 Transcriptional repressor [Transcription] 88.85
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 88.73
KOG3002 299 consensus Zn finger protein [General function pred 87.6
KOG3161 861 consensus Predicted E3 ubiquitin ligase [Posttrans 84.22
KOG4185 296 consensus Predicted E3 ubiquitin ligase [Posttrans 80.84
PF1376549 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2V 80.65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-81  Score=681.71  Aligned_cols=415  Identities=41%  Similarity=0.682  Sum_probs=360.2

Q ss_pred             HHHHHh----hcccCCCCCcccccchHHHHHHHHHHHHhhccCCCCC--CchhhhhhhHHHHHHHHHhhcCCCCccChhh
Q 000809          845 VWVVQL----LLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFV--PSTIFIKQGLASFVTFVVTHFNDPRISSADL  918 (1273)
Q Consensus       845 ~WLlrl----~~~~s~~~~~F~~lPEfylE~ivd~f~~l~r~~p~~v--~~~~~~~~~l~~~v~Fl~~~l~~~rIvNP~L  918 (1273)
                      +||++.    +..+|+++++|+|+||+|+.++...+.+++.|..+.-  ...+.+++.++..++||+.|++|||||..++
T Consensus         2 ~wll~~~lrtl~~~~~tgslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~riv~a~~   81 (489)
T KOG4692|consen    2 IWLLERMLRTLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADPRIVLASC   81 (489)
T ss_pred             hHHHHHHHHHhhccCCCcchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCceeeechh
Confidence            588875    4478999999999999999998888777776664322  2344468899999999999999999999999


Q ss_pred             HHHHHHHHHhhhcchhHHHHHhcC-HHHHHhhHHHHHhhccccccchhhHHHHHhhcCCCCcccccCC------------
Q 000809          919 RDLLLQSISVLVQYKDYLAAFESN-EAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGE------------  985 (1273)
Q Consensus       919 Ka~Lvq~L~~l~~~~~~~~~~e~~-~~a~~~Lv~aLL~~Y~~R~wi~~~~IL~r~w~g~gF~~rk~~~------------  985 (1273)
                      ||+|+|+|++++|||.+++++|+. +.++..|++|||++|+||.|||+||||+|||+|+||+|++++.            
T Consensus        82 kdsllqal~t~~c~~~~vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~Gf~y~~~r~phl~rsr~~n~~  161 (489)
T KOG4692|consen   82 KDSLLQALGTLTCHKSGVRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGSGFSYLKNREPHLCRSRSRNET  161 (489)
T ss_pred             HHHHHHHhhheeechhhhhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccCCccccccCCchhhhhhhcccc
Confidence            999999999999999999999997 7899999999999999999999999999999999999996553            


Q ss_pred             -----CCCCcHHHHHHHHHHHhhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhH------Hhhhhchhhhhch
Q 000809          986 -----SSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSE------FQQKKCCVIFDLS 1054 (1273)
Q Consensus       986 -----~~~~s~~~q~~l~e~~~~n~~~FvrFlN~LlNdl~~lldEfl~~L~eIq~~~~~~e------~qqr~c~s~f~Ls 1054 (1273)
                           ..+||++||++++..+.+|+++...|+|++||++||+|+||+.++||||++.|+.|      +|+|+|.+||+|+
T Consensus       162 ~~sl~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~~e~~Qlk~C~~cFeLs  241 (489)
T KOG4692|consen  162 HTSLSSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTLFEPFQLKKCCVCFELS  241 (489)
T ss_pred             cccccCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCHHHHhHhhhhHHHH
Confidence                 23589999999999999999999999999999999999999999999999877666      8999999999999


Q ss_pred             HHHHHHHHHHhhhcccCcCCC----hhhHHHHHHHHHHHHHHhhcCCcccccchhcccccCCCccCCCchhhhhHHHHHH
Q 000809         1055 CNLTRVLEFCTHEIPQAFLSG----TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGII 1130 (1273)
Q Consensus      1055 ~~tlr~Le~~T~~~p~~F~~~----~~~iv~RLa~MLny~L~~l~~~p~~~~~~~~lk~~~~~~ek~~p~~lL~~i~gIy 1130 (1273)
                      ++++|+|||.++.+|++|+++    ++.+++||+++||++|++++.++  ++|+..|+..+|++|||+|++||++++||+
T Consensus       242 vsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~--~lf~rvv~~~~~~le~V~hypil~a~~GIl  319 (489)
T KOG4692|consen  242 VSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEF--FLFVRVVRRQGQPLEKVSHYPILAALVGIL  319 (489)
T ss_pred             HHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhcccc--chhHHHHHhhcCChhhhcccchHHHHHHHH
Confidence            999999999999999999975    68899999999999999999876  488888898999999999999999999999


Q ss_pred             HhccccccccccCcccceeeeeeccCCCchhhhhHHHHhhhccc---------------Cc-----ccCCCCHHHHHHHH
Q 000809         1131 LNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWA---------------GS-----FRGDTYLSKLGQLE 1190 (1273)
Q Consensus      1131 LNL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~i~~~---------------~~-----~~~~~~~~~i~~l~ 1190 (1273)
                      |||+.+++..+.+...+++..+|+.|+|+|+..+|+|+++++|.               ++     +.+.++..++..++
T Consensus       320 l~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pdpp~p~t~~~p~pd~krfal~~~~~~~s~~e~~~V~  399 (489)
T KOG4692|consen  320 LNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPDPPDPLTDGCPSPDDKRFALVKKLGQLSNFESHLVN  399 (489)
T ss_pred             HHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCCCCCccccCCCCCCccchHHhhhhhhhhHHHHHHHH
Confidence            99999999877776665555556678899999999999999773               11     12334555566666


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCcccccccc
Q 000809         1191 CFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus      1191 ~f~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~ 1266 (1273)
                      +..+.+.+++.+...    .+ -.+.||.+|||||..+.++||.||||.+|+.||.+|+++++.|+||++.+.+++
T Consensus       400 r~~~~l~~~~~~~~~----~~-lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~  470 (489)
T KOG4692|consen  400 RASSQLPERKEESFN----KD-LPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI  470 (489)
T ss_pred             HHHhhcchhhHHhhc----CC-CCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence            666665554443222    12 233688999999999999999999999999999999999999999999988854

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38 Back     alignment and domain information
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00449 SPRY Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function Back     alignment and domain information
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification] Back     alignment and domain information
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1273
3toj_A213 Structure Of The Spry Domain Of Human Ash2l Length 8e-09
>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l Length = 213 Back     alignment and structure 
Iteration: 1

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 31/181 (17%)
Query: 120 VRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLE---TSGVQQLGWA----TLSCPF 172
           ++I+   L V     +S  RA+  V KG W +E+T++        +LGW+     L  P 
Sbjct: 24  LKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAP- 82
Query: 173 TDHKGVGDADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDSDEIS------- 224
                +G    SY++  ++  K+++   + Y   +  GD++G  I+L  D IS       
Sbjct: 83  -----LGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEI 137
Query: 225 -FYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARP-FKYPIN--CYLPLQ 280
            FY+NGV+ GVA+  I +      Y+PA+SL +     +NFG  P FKYP     Y P+ 
Sbjct: 138 IFYKNGVNQGVAYKDIFEG----VYFPAISLYKSCTVSINFG--PCFKYPPKDLTYRPMS 191
Query: 281 E 281
           +
Sbjct: 192 D 192

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1273
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 3e-45
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 3e-35
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 1e-34
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 5e-29
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 1e-27
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 4e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 3e-06
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 7e-06
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 8e-06
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 4e-05
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 2e-04
2ea5_A68 Cell growth regulator with ring finger domain prot 2e-04
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 4e-04
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 4e-04
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 8e-04
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213 Back     alignment and structure
 Score =  161 bits (409), Expect = 3e-45
 Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 21/200 (10%)

Query: 98  GILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLE- 156
           G L        V L        ++I+   L V     +S  RA+  V KG W +E+T++ 
Sbjct: 2   GDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDE 61

Query: 157 --TSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNK-EAEPYGQSWVAGDIIG 213
                  +LGW+           +G    SY++  ++  K+++   + Y   +  GD++G
Sbjct: 62  MPPDTAARLGWSQPLGNLQ--APLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLG 119

Query: 214 CCIDLDSDEIS--------FYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFG 265
             I+L  D IS        FY+NGV+ GVA+  I        Y+PA+SL +     +NFG
Sbjct: 120 FYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDI----FEGVYFPAISLYKSCTVSINFG 175

Query: 266 ARPFKYPIN--CYLPLQESP 283
              FKYP     Y P+ +  
Sbjct: 176 P-CFKYPPKDLTYRPMSDMG 194
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 Back     alignment and structure
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171 Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1273
d2fnja1217 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi 4e-20
d2afja1213 b.29.1.22 (A:12-224) SPRY domain-containing SOCS b 1e-19
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 2e-06
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 2e-04
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 2e-04
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 88.3 bits (218), Expect = 4e-20
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 25/164 (15%)

Query: 135 FSSARANVCVWKGKWMYEVTLE---TSGVQQLGWATLSCPFTDHK---GVGDADDSYAFD 188
               R  V + KG  ++E+            +G  T   P         VG  + S+ +D
Sbjct: 54  TDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSWGWD 113

Query: 189 GRRVKKWNKEAE----------PYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSG 238
             R K ++                 ++++  D     +D+D   +SF  +   LG+AF G
Sbjct: 114 LGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRG 173

Query: 239 IRKMGPGFGYYPAVSLSQGERCV-LNFGARPFKYPINCYLPLQE 281
           +     G   YP VS   G   + + +       P    LPL +
Sbjct: 174 L----RGKKLYPIVSAVWGHCEITMRYIGGLDPEP----LPLMD 209
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1273
d2fnja1217 LD34464p {Fruit fly (Drosophila melanogaster) [Tax 99.94
d2afja1213 SPRY domain-containing SOCS box protein 2 {Mouse ( 99.93
d2fbea1188 Similar to Ret finger protein-like 1 {Human (Homo 99.58
d2iwgb1179 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 99.54
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.98
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.97
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.92
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.88
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.77
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.76
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.57
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.55
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.41
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.39
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.31
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.3
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.26
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.15
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.94
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.56
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.2
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3.4e-26  Score=207.84  Aligned_cols=159  Identities=21%  Similarity=0.281  Sum_probs=133.5

Q ss_pred             EEEECCCCCCCCEEEECCCCEEEEE---C-CEEEEEECCEEECCEEEEEEEEEEC---CEEEEEEECCCCCCCC---CCC
Q ss_conf             2884866588973992999389950---7-5205982930106879999999841---9189998349999999---999
Q 000809          108 IVGLEESSICGDVRIAKLPLLVESL---A-MFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTD---HKG  177 (1273)
Q Consensus       108 ~V~LD~~~~~~~i~lS~d~L~v~~~---s-~~~sVRat~gV~sGkwYfEV~I~s~---G~irIGvat~~~~l~~---~~g  177 (1273)
                      ...||+.+++.++.++++++.+...   + ++++||++.++++|||||||+|...   +.++|||++..++++.   ...
T Consensus        23 ~~~wn~~~~~~~~~ls~~~~~~~~~~~~~~~~~~vrgt~g~ssGk~YWEV~v~~~~~~~~~~IGV~~~~~~~~~~~~~~~  102 (217)
T d2fnja1          23 KHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSL  102 (217)
T ss_dssp             HTSEEEEEECTTEEEETTEEEEEEECCCTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCSEEESSCCC
T ss_pred             CCCCCHHCCCCCEEEECCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf             55378001788779818993699858865447748876454587389999991278987058999944657445775343


Q ss_pred             CCCCCCCEEEECCCCCCCCCCC----------CCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCC
Q ss_conf             6689994147269942004887----------667987789999999996899759998889052010013334689983
Q 000809          178 VGDADDSYAFDGRRVKKWNKEA----------EPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFG  247 (1273)
Q Consensus       178 vG~d~~Swgy~g~~g~~~h~~~----------~~yG~~f~~GDVIGc~IDld~gtI~FtkNG~~LGvAF~~i~~~~~~~~  247 (1273)
                      +|.+.+||+|++.++.+||++.          ..|+++|..||||||+||+++|+|+||+||+.+|+||++++    +..
T Consensus       103 ~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGV~LD~d~gtLsF~kNG~~lGvAf~~l~----~~~  178 (217)
T d2fnja1         103 VGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLR----GKK  178 (217)
T ss_dssp             TTSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----TCC
T ss_pred             CCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEEECCC----CCE
T ss_conf             3678876337449987982488856432575445677667999999999679988999999979567773799----981


Q ss_pred             EEEEEEEC-CCCEEEEECCCCCCCC
Q ss_conf             89999937-9978999529999745
Q 000809          248 YYPAVSLS-QGERCVLNFGARPFKY  271 (1273)
Q Consensus       248 lYPaVSl~-~g~~V~vNFG~~pFky  271 (1273)
                      |||+||.. .+..|+++|... +..
T Consensus       179 lyP~vs~~~~~~~v~~~~~~~-~~~  202 (217)
T d2fnja1         179 LYPIVSAVWGHCEITMRYIGG-LDP  202 (217)
T ss_dssp             BEEEEEECCTTCEEEEEEEEE-ECS
T ss_pred             EEEEEEECCCCCEEEEEECCC-CCC
T ss_conf             888999535884899997687-688
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure